AlfalfaGEDB | MsG0380016337.01

M. sativa cultivar ZhongmuNo.1 / MsG0380016337.01

KEGG: -
GO: GO:0005488
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380016337.01.T01	XP_003602008.2	68.661	351	42	3	115	398	1763	2112	3.08E-142	458
MsG0380016337.01.T01	XP_003602008.2	76.471	187	4	2	1	147	1485	1671	3.13E-67	243

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380016337.01.T01	F4IIM1	65.269	334	49	2	132	398	1778	2111	8.92E-132	420

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380016337.01.T01	G7J4D6	68.661	351	42	3	115	398	1763	2112	1.47e-142	458

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0280006293.01	MsG0380016337.01	0.821865	3.216792e-53	2.648869e-50
MsG0280006306.01	MsG0380016337.01	0.801312	9.555839e-49	4.549073e-46
MsG0380016323.01	MsG0380016337.01	0.818050	2.399368e-52	1.776828e-49
MsG0380016337.01	MsG0380016340.01	0.834006	3.845995e-56	4.505422e-53
MsG0380016337.01	MsG0380016899.01	0.848253	6.895007e-60	1.257695e-56
MsG0380016337.01	MsG0380017891.01	0.821561	3.781097e-53	3.086820e-50
MsG0380016337.01	MsG0580025670.01	0.815152	1.070177e-51	7.320340e-49
MsG0380016337.01	MsG0780041213.01	0.836443	9.329482e-57	1.175932e-53

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380016337.01.T01	MTR_3g087800	68.661	351	42	3	115	398	1763	2112	3.73e-146	458
MsG0380016337.01.T01	MTR_3g087800	76.471	187	4	2	1	147	1485	1671	3.79e-71	243
MsG0380016337.01.T01	MTR_8g091470	60.684	351	70	3	115	398	1816	2165	1.10e-126	403
MsG0380016337.01.T01	MTR_8g091470	58.289	187	38	3	1	147	1540	1726	7.43e-54	193
MsG0380016337.01.T01	MTR_1g029790	42.638	326	120	3	140	398	1760	2085	8.21e-76	256
MsG0380016337.01.T01	MTR_1g029790	39.037	187	74	2	2	148	1461	1647	5.17e-32	129
MsG0380016337.01.T01	MTR_8g091450	47.541	122	51	2	281	398	13	125	1.15e-22	94.7

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380016337.01.T01	AT2G22125	65.269	334	49	2	132	398	1778	2111	9.09e-133	420
MsG0380016337.01.T01	AT2G22125	62.032	187	31	2	1	147	1486	1672	2.37e-63	220
MsG0380016337.01.T01	AT1G77460	43.731	327	115	3	140	398	1764	2089	1.94e-76	258
MsG0380016337.01.T01	AT1G77460	38.298	188	76	2	1	148	1464	1651	2.01e-27	115
MsG0380016337.01.T01	AT1G77460	43.731	327	115	3	140	398	1764	2089	1.94e-76	258
MsG0380016337.01.T01	AT1G77460	38.298	188	76	2	1	148	1464	1651	2.01e-27	115
MsG0380016337.01.T01	AT1G77460	43.731	327	115	3	140	398	1764	2089	1.94e-76	258
MsG0380016337.01.T01	AT1G77460	38.298	188	76	2	1	148	1464	1651	2.01e-27	115
MsG0380016337.01.T01	AT1G77460	43.731	327	115	3	140	398	1764	2089	1.94e-76	258
MsG0380016337.01.T01	AT1G77460	38.298	188	76	2	1	148	1464	1651	2.01e-27	115

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Find 96 sgRNAs with CRISPR-Local

Find 264 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATGGGAAAGGTAACTGA+GGG	0.649513	3:-82146027	MsG0380016337.01.T01:CDS
AAACAAGAGTAAAATGGGAA+AGG	0.577240	3:-82146037	MsG0380016337.01.T01:CDS
AAACTCAAGCACAGCAAGCG+AGG	0.633464	3:-82148349	MsG0380016337.01.T01:CDS
AAAGCTGCACAGAGATAATC+AGG	0.434629	3:+82149210	None:intergenic
AAAGGTAACTGAGGGAAAAT+TGG	0.349947	3:-82146019	MsG0380016337.01.T01:CDS
AAATAAAAGAGCAGTTGCAG+AGG	0.556490	3:-82148153	MsG0380016337.01.T01:CDS
AACAACTTTCATTTCTTCAG+TGG	0.453857	3:+82148217	None:intergenic
AACAATGCTAGCATAGCCAA+AGG	0.642501	3:-82149162	MsG0380016337.01.T01:CDS
AACACACTATGTTGTCCATT+GGG	0.471964	3:+82149078	None:intergenic
AACACTTAGCATTCCACATC+TGG	0.391806	3:-82146783	MsG0380016337.01.T01:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAACAAGAGTAAAATGGGAA+AGG	-	Chr3:82149244-82149263	MsG0380016337.01.T01:CDS	30.0%
AAACCTTAAATGACCAAAAC+CGG	+	Chr3:82147785-82147804	None:intergenic	30.0%
AACAACTTTCATTTCTTCAG+TGG	+	Chr3:82147067-82147086	None:intergenic	30.0%
AATAATATGAAGCAGTCTGT+TGG	-	Chr3:82148762-82148781	MsG0380016337.01.T01:CDS	30.0%
ACAACTTTCATTTCTTCAGT+GGG	+	Chr3:82147066-82147085	None:intergenic	30.0%
ACATTACACTAAACCAAAAG+TGG	-	Chr3:82147886-82147905	MsG0380016337.01.T01:intron	30.0%
ATGTAATCAATCATACTGGT+AGG	-	Chr3:82147686-82147705	MsG0380016337.01.T01:intron	30.0%
CAATTGTTAACATCACATGA+TGG	+	Chr3:82147307-82147326	None:intergenic	30.0%
TCTTGTTAGCAAAAAGAACA+GGG	+	Chr3:82146171-82146190	None:intergenic	30.0%
TGCACCATTTAAGTAAAAAG+AGG	+	Chr3:82147360-82147379	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr3	gene	82146014	82149289	82146014	ID=MsG0380016337.01;Name=MsG0380016337.01
Chr3	mRNA	82146014	82149289	82146014	ID=MsG0380016337.01.T01;Parent=MsG0380016337.01;Name=MsG0380016337.01.T01;_AED=0.50;_eAED=0.52;_QI=0\|0\|0\|1\|1\|1\|5\|0\|399
Chr3	exon	82149085	82149289	82149085	ID=MsG0380016337.01.T01:exon:11732;Parent=MsG0380016337.01.T01
Chr3	exon	82148754	82148974	82148754	ID=MsG0380016337.01.T01:exon:11731;Parent=MsG0380016337.01.T01
Chr3	exon	82148150	82148387	82148150	ID=MsG0380016337.01.T01:exon:11730;Parent=MsG0380016337.01.T01
Chr3	exon	82146560	82146914	82146560	ID=MsG0380016337.01.T01:exon:11729;Parent=MsG0380016337.01.T01
Chr3	exon	82146014	82146194	82146014	ID=MsG0380016337.01.T01:exon:11728;Parent=MsG0380016337.01.T01
Chr3	CDS	82149085	82149289	82149085	ID=MsG0380016337.01.T01:cds;Parent=MsG0380016337.01.T01
Chr3	CDS	82148754	82148974	82148754	ID=MsG0380016337.01.T01:cds;Parent=MsG0380016337.01.T01
Chr3	CDS	82148150	82148387	82148150	ID=MsG0380016337.01.T01:cds;Parent=MsG0380016337.01.T01
Chr3	CDS	82146560	82146914	82146560	ID=MsG0380016337.01.T01:cds;Parent=MsG0380016337.01.T01
Chr3	CDS	82146014	82146194	82146014	ID=MsG0380016337.01.T01:cds;Parent=MsG0380016337.01.T01

Gene Sequence

>MsG0380016337.01.T01

ATGGAAATGGTGAAAGCTGGTGTCATTGAATGCATACTTGACATCCTTCATGAAGCACCTGATTATCTCTGTGCAGCTTTTGCTGAATTGTTACGTATATTGACCAACAATGCTAGCATAGCCAAAGGATCATCAGCTGCTAAAGTGGTTGAACCCCTGTTCTTTTTGCTAACAAGACAAGAATTTGGGCCCAATGGACAACATAATACAGTGCAGCAGTTGGTTGCCGAGCTTCTATCCCATCTACTTTTAGAAGAAGACCTTCAAAAGGATCCAGTGACACAGCAAGTAATTGGCCCTCTTGTGCGAGTTCTTGGTTCAGGCATGCAAATATTGCAGCAGAGAGCTTTGAAGGCCCTTGTCAGTATTGCAGTTGTATGGCCCAATGAAATTGCAAAAGAGGGTGGTGTTATTGAAATTTCCAAATACCTTTTGGATCCTCAAACTCAAGCACAGCAAGCGAGGTTATTAGCAACTTTGGCTCTTGGTGATCTATTCCAGAATGAGAGTCTTGCTCGGACAGCTGATGCAGCCTCAGCTTGTCATGCTTTAGTGAATGTGCTTATAGACCAACCCACTGAAGAAATGAAAGTTGTTGCCATATGTGCTCTGCAGAACCTTGTGATGCACAGTCGAGCAAATAAAAGAGCAGTTGCAGAGGCCACTGCTATCGAAAAGGATTTATGGGCTACTGGAGCGGTGAACGACGAGTATCTTAAAGCCTTAAATTCTCTATTTAGCAACTTTGCACACCTGAGAGCAACTGAACCAGCAACACTTAGCATTCCACATCTGGTTACATCCTTAAAGTCAGGTTCAGAGGCCACTCAGGAAGCTGCGTTGGATGCACTTTTTCTGCTCAGGCAAGCTTGGTCAGCATGCCCAGCAGAAGTTTCAAGAGCTCAGTCCATAGCAGCCGCAGATGCTATTCCTATGTTACAGTACTTACTCCAGTCTGGACCACCTCGGGTTCATGAGAAGGCAGAGTTTCTGTTGCAGTGTTTGCCGGGACATTGGTGGAAATTTAATATGCTAATACATGATAATTATGCTGCTCAGGTGGTCTCAACTGGCCCTAACCCAGAGTGGGATGAGAGTTTCTCATGGTCCTTCGAGAGTCCTCCAAAAGGCCAGAAGCTTCAAATTTCTTGCAAAAACAAGAGTAAAATGGGAAAGGTAACTGAGGGAAAATTGGACTAA

Protein sequence

>MsG0380016337.01.T01

MEMVKAGVIECILDILHEAPDYLCAAFAELLRILTNNASIAKGSSAAKVVEPLFFLLTRQEFGPNGQHNTVQQLVAELLSHLLLEEDLQKDPVTQQVIGPLVRVLGSGMQILQQRALKALVSIAVVWPNEIAKEGGVIEISKYLLDPQTQAQQARLLATLALGDLFQNESLARTADAASACHALVNVLIDQPTEEMKVVAICALQNLVMHSRANKRAVAEATAIEKDLWATGAVNDEYLKALNSLFSNFAHLRATEPATLSIPHLVTSLKSGSEATQEAALDALFLLRQAWSACPAEVSRAQSIAAADAIPMLQYLLQSGPPRVHEKAEFLLQCLPGHWWKFNMLIHDNYAAQVVSTGPNPEWDESFSWSFESPPKGQKLQISCKNKSKMGKVTEGKLD*