Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380016955.01.T01 | ABY57316.1 | 97.535 | 649 | 16 | 0 | 72 | 720 | 3 | 651 | 0 | 1309 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380016955.01.T01 | P09114 | 79.592 | 637 | 126 | 2 | 84 | 720 | 32 | 664 | 0 | 1056 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380016955.01.T01 | B0FBK4 | 97.535 | 649 | 16 | 0 | 72 | 720 | 3 | 651 | 0.0 | 1309 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0180004278.01 | MsG0380016955.01 | 0.833011 | 6.812263e-56 | 7.746014e-53 |
| MsG0180004435.01 | MsG0380016955.01 | 0.816889 | 4.382015e-52 | 3.143527e-49 |
| MsG0280011459.01 | MsG0380016955.01 | 0.814500 | 1.493019e-51 | 1.003533e-48 |
| MsG0380016955.01 | MsG0480023480.01 | 0.814342 | 1.617810e-51 | 1.082743e-48 |
| MsG0380016955.01 | MsG0680032197.01 | 0.806799 | 6.900954e-50 | 3.780480e-47 |
| MsG0380016955.01 | MsG0780040073.01 | 0.801445 | 8.972772e-49 | 4.285864e-46 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380016955.01.T01 | MTR_3g099190 | 97.227 | 649 | 18 | 0 | 72 | 720 | 3 | 651 | 0.0 | 1301 |
| MsG0380016955.01.T01 | MTR_2g013120 | 78.858 | 648 | 129 | 3 | 74 | 720 | 15 | 655 | 0.0 | 1068 |
| MsG0380016955.01.T01 | MTR_2g027220 | 83.387 | 626 | 85 | 5 | 77 | 698 | 3 | 613 | 0.0 | 1063 |
| MsG0380016955.01.T01 | MTR_6g004200 | 26.079 | 579 | 361 | 21 | 149 | 691 | 6 | 553 | 1.48e-35 | 142 |
| MsG0380016955.01.T01 | MTR_7g069540 | 24.408 | 549 | 355 | 20 | 116 | 639 | 20 | 533 | 7.92e-20 | 94.4 |
| MsG0380016955.01.T01 | MTR_5g046610 | 23.364 | 535 | 361 | 17 | 128 | 639 | 27 | 535 | 8.85e-20 | 94.4 |
| MsG0380016955.01.T01 | MTR_4g017200 | 23.377 | 539 | 364 | 17 | 124 | 639 | 23 | 535 | 1.08e-19 | 94.0 |
| MsG0380016955.01.T01 | MTR_2g009330 | 22.222 | 567 | 367 | 19 | 161 | 695 | 64 | 588 | 7.47e-18 | 88.2 |
| MsG0380016955.01.T01 | MTR_2g027200 | 53.226 | 62 | 10 | 1 | 620 | 681 | 1 | 43 | 4.63e-16 | 73.2 |
| MsG0380016955.01.T01 | MTR_2g015560 | 22.610 | 544 | 353 | 17 | 124 | 637 | 3 | 508 | 8.46e-15 | 78.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380016955.01.T01 | AT3G48560 | 83.276 | 586 | 98 | 0 | 135 | 720 | 85 | 670 | 0.0 | 1039 |
| MsG0380016955.01.T01 | AT5G17380 | 28.227 | 581 | 355 | 18 | 143 | 691 | 7 | 557 | 4.34e-47 | 176 |
| MsG0380016955.01.T01 | AT5G01330 | 24.760 | 521 | 322 | 18 | 153 | 639 | 36 | 520 | 8.91e-23 | 103 |
| MsG0380016955.01.T01 | AT5G01320 | 23.623 | 563 | 361 | 17 | 112 | 639 | 3 | 531 | 2.35e-22 | 102 |
| MsG0380016955.01.T01 | AT4G33070 | 23.552 | 518 | 332 | 15 | 153 | 639 | 51 | 535 | 1.42e-20 | 97.1 |
| MsG0380016955.01.T01 | AT5G54960 | 23.810 | 504 | 344 | 16 | 153 | 637 | 51 | 533 | 1.22e-17 | 87.8 |
Find 220 sgRNAs with CRISPR-Local
Find 265 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGACTTGGTGCTATGGGTTT+TGG | 0.185895 | 3:-89949575 | MsG0380016955.01.T01:CDS |
| TTCTCTAAGCTCTTCCTTCT+TGG | 0.199752 | 3:+89949253 | None:intergenic |
| AGTGATCTGTTGCTTGCTTT+TGG | 0.224503 | 3:-89950010 | MsG0380016955.01.T01:CDS |
| CAACCAAAGCAGCAGCAAAA+AGG | 0.234779 | 3:-89951212 | MsG0380016955.01.T01:CDS |
| TAAATACCCGGTTAGCTTAA+TGG | 0.255425 | 3:+89950291 | None:intergenic |
| GAGAATGTTACGGATGGTTT+TGG | 0.263072 | 3:+89950702 | None:intergenic |
| GGTGGAAGGTGGTGCGGTGG+AGG | 0.278151 | 3:+89950885 | None:intergenic |
| TTCGCCTCAGTATGCTATTC+AGG | 0.285179 | 3:-89949714 | MsG0380016955.01.T01:CDS |
| GTGAGTGTGGTGGTGCGTTT+AGG | 0.296862 | 3:+89950982 | None:intergenic |
| AGGTTTGATGATAGAGTTAC+TGG | 0.302099 | 3:-89949983 | MsG0380016955.01.T01:CDS |
| TTTGGATTACCTGCTGCTAT+TGG | 0.306470 | 3:-89949557 | MsG0380016955.01.T01:CDS |
| TTATCTTGGTGACCCTTCTA+AGG | 0.316866 | 3:-89949342 | MsG0380016955.01.T01:CDS |
| TCAGCAAATCCAAGCATGTT+AGG | 0.319955 | 3:+89949305 | None:intergenic |
| GGAAGGTCTTAATAGAGTTT+TGG | 0.325965 | 3:-89949843 | MsG0380016955.01.T01:CDS |
| GGCGTTTGTATCGCCACTTC+TGG | 0.330304 | 3:-89950616 | MsG0380016955.01.T01:CDS |
| GAGTTGTTGTTGAACATCTT+TGG | 0.336827 | 3:+89950336 | None:intergenic |
| GGTAACGCCTTCGCGTTCTA+AGG | 0.337243 | 3:+89950783 | None:intergenic |
| AAAATCTCATCCTCCTTAGA+AGG | 0.349687 | 3:+89949329 | None:intergenic |
| TCCTGTTGCTAGTACTTTGA+TGG | 0.351983 | 3:-89950122 | MsG0380016955.01.T01:CDS |
| GCTCGCTCATCCGGTCTTCC+CGG | 0.355441 | 3:-89950637 | MsG0380016955.01.T01:CDS |
| TTCTGGTGGACTTGGTGCTA+TGG | 0.360161 | 3:-89949582 | MsG0380016955.01.T01:CDS |
| TGCTGCTTTGGTTGTTGTGT+GGG | 0.360514 | 3:+89951221 | None:intergenic |
| AAATACCCGGTTAGCTTAAT+GGG | 0.368189 | 3:+89950292 | None:intergenic |
| GTCACCGTGACATTAGATTT+AGG | 0.370354 | 3:+89951320 | None:intergenic |
| GATATTGATTCAGCTGAGAT+TGG | 0.373548 | 3:-89949917 | MsG0380016955.01.T01:CDS |
| ATCCTTGAATGAACCATTGC+TGG | 0.373588 | 3:+89949145 | None:intergenic |
| GTCCCTCTCATCGCTATTAC+CGG | 0.374961 | 3:-89950541 | MsG0380016955.01.T01:CDS |
| GCTAGTACTTTGATGGGATT+AGG | 0.375995 | 3:-89950115 | MsG0380016955.01.T01:CDS |
| GTTGTTGAATAATCAACATC+TGG | 0.376276 | 3:-89949417 | MsG0380016955.01.T01:CDS |
| GGATTAGGTTGTTACCCTAT+TGG | 0.378851 | 3:-89950100 | MsG0380016955.01.T01:CDS |
| GGTGGTGGAAGGTGGTGCGG+TGG | 0.379417 | 3:+89950882 | None:intergenic |
| TGCGCCTCACTAGGAATCTT+AGG | 0.383660 | 3:+89950259 | None:intergenic |
| ATCTCCATGGAAGCGCCGCC+AGG | 0.383879 | 3:+89950745 | None:intergenic |
| AACTTCGGGCCGCCCCGGCC+CGG | 0.389700 | 3:-89950374 | MsG0380016955.01.T01:CDS |
| AACCGGTTTGTGGAGTTAAC+TGG | 0.389714 | 3:-89950148 | MsG0380016955.01.T01:CDS |
| CGGCCTCGCAGACGCTTTGA+TGG | 0.390497 | 3:-89950569 | MsG0380016955.01.T01:CDS |
| AGAGAATGTTCACCTCCAAT+AGG | 0.394457 | 3:+89950085 | None:intergenic |
| CGGTGGTACAACAACAACTA+TGG | 0.395862 | 3:+89948921 | None:intergenic |
| TGGTTAACTTCTGGTGGACT+TGG | 0.398980 | 3:-89949590 | MsG0380016955.01.T01:CDS |
| AGTTGTTGTTGAACATCTTT+GGG | 0.400294 | 3:+89950337 | None:intergenic |
| TCCGAGCCCATTAAGCTAAC+CGG | 0.409009 | 3:-89950298 | MsG0380016955.01.T01:CDS |
| GAACATTCTCTTTCAATGTT+GGG | 0.410408 | 3:-89950073 | MsG0380016955.01.T01:CDS |
| AATAGAGCTCATACTTATCT+TGG | 0.410570 | 3:-89949356 | MsG0380016955.01.T01:CDS |
| CTCGTCGTCGGTGGTGGTGG+TGG | 0.414914 | 3:+89950867 | None:intergenic |
| TGAGTGTGGTGGTGCGTTTA+GGG | 0.415471 | 3:+89950983 | None:intergenic |
| AACAACTCGCTGTTCCGAAT+TGG | 0.416644 | 3:-89950321 | MsG0380016955.01.T01:CDS |
| GTGGAAGGTGGTGCGGTGGA+GGG | 0.417842 | 3:+89950886 | None:intergenic |
| GATGTTGATTATTCAACAAC+AGG | 0.420055 | 3:+89949420 | None:intergenic |
| GAACCATTGCTGGGAATCAT+TGG | 0.422917 | 3:+89949155 | None:intergenic |
| TTTGGAGAGTAAAGGAATCA+AGG | 0.425848 | 3:-89949825 | MsG0380016955.01.T01:CDS |
| CTTGCAACTTCGGGCCGCCC+CGG | 0.427247 | 3:-89950379 | MsG0380016955.01.T01:CDS |
| GTTGAGGGCTTCCTTGTTTG+TGG | 0.429179 | 3:+89951263 | None:intergenic |
| TGGCTCGTCGTCGGTGGTGG+TGG | 0.430411 | 3:+89950864 | None:intergenic |
| GGTGGTGCGTTTAGGGAAAG+TGG | 0.430981 | 3:+89950990 | None:intergenic |
| TGAACATTCTCTTTCAATGT+TGG | 0.431403 | 3:-89950074 | MsG0380016955.01.T01:CDS |
| ACATCAATGAGAACCGGGCC+GGG | 0.431424 | 3:+89950361 | None:intergenic |
| GAAGGCTACGCTCGCTCATC+CGG | 0.435119 | 3:-89950646 | MsG0380016955.01.T01:CDS |
| AGCTAACCGGGTATTTATCC+AGG | 0.435277 | 3:-89950285 | MsG0380016955.01.T01:CDS |
| CCTAGGCAGTGGTTAACTTC+TGG | 0.436210 | 3:-89949599 | MsG0380016955.01.T01:CDS |
| GGTGGTGGTGGAAGGTGGTG+CGG | 0.436889 | 3:+89950879 | None:intergenic |
| CATTCTCCGGGGAACTTGAC+CGG | 0.442229 | 3:+89950522 | None:intergenic |
| TTGATGTTGAAGATATTCCT+AGG | 0.443087 | 3:-89950423 | MsG0380016955.01.T01:CDS |
| GACTCCACCTTGTTCGTGAC+GGG | 0.443115 | 3:+89950678 | None:intergenic |
| ATATCAACGACTATTGCATC+AGG | 0.443402 | 3:+89949518 | None:intergenic |
| TTCAACAACAGGATCTTAAC+CGG | 0.445446 | 3:+89949431 | None:intergenic |
| ATCGGTTCCGATCATTCTCC+GGG | 0.445677 | 3:+89950510 | None:intergenic |
| TCGTCGGTGGTGGTGGTGGA+AGG | 0.447050 | 3:+89950871 | None:intergenic |
| TGGTGCGGTGGAGGGTTTGA+GGG | 0.447339 | 3:+89950894 | None:intergenic |
| TAGTGAGGCGCAGTTAGAAC+AGG | 0.448177 | 3:-89950248 | MsG0380016955.01.T01:CDS |
| ATCTGGGTATGGTTGTTCAA+TGG | 0.448201 | 3:-89949400 | MsG0380016955.01.T01:CDS |
| TTGGGTACATCAATGAGAAC+CGG | 0.448716 | 3:+89950355 | None:intergenic |
| TCTGGTGGACTTGGTGCTAT+GGG | 0.449060 | 3:-89949581 | MsG0380016955.01.T01:CDS |
| CATCGGTTCCGATCATTCTC+CGG | 0.449609 | 3:+89950509 | None:intergenic |
| GTGGTGCGGTGGAGGGTTTG+AGG | 0.449683 | 3:+89950893 | None:intergenic |
| CCCATCAAAGTACTAGCAAC+AGG | 0.449704 | 3:+89950121 | None:intergenic |
| CCCGGTTAGCTTAATGGGCT+CGG | 0.459364 | 3:+89950297 | None:intergenic |
| TCTGGGTATGGTTGTTCAAT+GGG | 0.460755 | 3:-89949399 | MsG0380016955.01.T01:CDS |
| GCTGACTAAGTTGGTGGCAC+CGG | 0.460794 | 3:+89950591 | None:intergenic |
| CAATAGTCGTTGATATTGAC+GGG | 0.462837 | 3:-89949511 | MsG0380016955.01.T01:CDS |
| CTTTCAATGTTGGGTATGCA+TGG | 0.465046 | 3:-89950064 | MsG0380016955.01.T01:CDS |
| TGAGGAATTGAACCGGTTTG+TGG | 0.466094 | 3:-89950158 | MsG0380016955.01.T01:CDS |
| CAAGGACACAAAACTAAACT+AGG | 0.466950 | 3:+89948978 | None:intergenic |
| CCTGTTGCTAGTACTTTGAT+GGG | 0.469144 | 3:-89950121 | MsG0380016955.01.T01:CDS |
| GTGGTGCGTTTAGGGAAAGT+GGG | 0.473107 | 3:+89950991 | None:intergenic |
| AGAAGGAGTTATTGATTGCT+CGG | 0.473236 | 3:-89949101 | MsG0380016955.01.T01:exon |
| GAGAATGTTCACCTCCAATA+GGG | 0.474646 | 3:+89950086 | None:intergenic |
| CAGAAAATGTTGGACACTCC+TGG | 0.475840 | 3:-89949224 | MsG0380016955.01.T01:CDS |
| CTTGGATTTGCTGATGCTTG+CGG | 0.477480 | 3:-89949296 | MsG0380016955.01.T01:CDS |
| GTGTATCTCTCGGAAGCACT+TGG | 0.477610 | 3:+89951287 | None:intergenic |
| CAGAAGTTGAAATTTCCTCT+TGG | 0.480563 | 3:-89949761 | MsG0380016955.01.T01:CDS |
| ATTGTAAACGTAGTAGTTGA+GGG | 0.482478 | 3:+89951248 | None:intergenic |
| ATTGTACAAAACAACACATA+AGG | 0.484309 | 3:+89949056 | None:intergenic |
| CCACCACCAACATATAAAAC+AGG | 0.484903 | 3:+89950196 | None:intergenic |
| TCCTCCACCCAACCCCGAAA+AGG | 0.485931 | 3:-89950826 | MsG0380016955.01.T01:CDS |
| ATATTGATTCAGCTGAGATT+GGG | 0.489098 | 3:-89949916 | MsG0380016955.01.T01:CDS |
| CTGCTGCTTTGGTTGTTGTG+TGG | 0.490289 | 3:+89951220 | None:intergenic |
| TTACCCTGGCGGCGCTTCCA+TGG | 0.491095 | 3:-89950749 | MsG0380016955.01.T01:CDS |
| TCCCAGCAATGGTTCATTCA+AGG | 0.491125 | 3:-89949147 | MsG0380016955.01.T01:CDS |
| TACATCAATGAGAACCGGGC+CGG | 0.491527 | 3:+89950360 | None:intergenic |
| TATAATGAACGTTCAAGAGT+TGG | 0.491642 | 3:-89949477 | MsG0380016955.01.T01:CDS |
| TGTATCGCCACTTCTGGTCC+CGG | 0.495694 | 3:-89950610 | MsG0380016955.01.T01:CDS |
| GAAGGAGTTATTGATTGCTC+GGG | 0.496682 | 3:-89949100 | MsG0380016955.01.T01:exon |
| CGGTGTTTCTTGAAAAGCAT+CGG | 0.498339 | 3:+89950492 | None:intergenic |
| CAGCAAATCCAAGCATGTTA+GGG | 0.498452 | 3:+89949306 | None:intergenic |
| CAAGTTCCCCGGAGAATGAT+CGG | 0.499099 | 3:-89950517 | MsG0380016955.01.T01:CDS |
| TGGTTGAGAATGGGAGAGAG+AGG | 0.499902 | 3:+89950955 | None:intergenic |
| GTGCGAATAGAAAGGAGATC+TGG | 0.502437 | 3:+89951014 | None:intergenic |
| TTGGAGAGTAAAGGAATCAA+GGG | 0.505762 | 3:-89949824 | MsG0380016955.01.T01:CDS |
| AAGTTAATTGAATACTAAAA+CGG | 0.510257 | 3:+89948776 | None:intergenic |
| ACAATAACATCAAGAAGATA+AGG | 0.511351 | 3:+89949200 | None:intergenic |
| AGATCTGGAAGGAGTAGTAG+TGG | 0.512532 | 3:+89951029 | None:intergenic |
| TTTACAAGTATAAGAGACCT+AGG | 0.514340 | 3:-89949616 | MsG0380016955.01.T01:CDS |
| GGTGATGCTATTGTTAGTAC+TGG | 0.514392 | 3:-89949671 | MsG0380016955.01.T01:CDS |
| TCGGTGGTGGTGGTGGAAGG+TGG | 0.514483 | 3:+89950874 | None:intergenic |
| CATCAATGAGAACCGGGCCG+GGG | 0.517234 | 3:+89950362 | None:intergenic |
| CACCAGTTAACTCCACAAAC+CGG | 0.519366 | 3:+89950146 | None:intergenic |
| TATAAGAGTAGAGAATCTTC+CGG | 0.519396 | 3:-89949450 | MsG0380016955.01.T01:CDS |
| GATATGAAGGTGGCGTTGGA+AGG | 0.519636 | 3:-89949860 | MsG0380016955.01.T01:CDS |
| CTATTACCGGTCAAGTTCCC+CGG | 0.520429 | 3:-89950528 | MsG0380016955.01.T01:CDS |
| GATACAAACGCCGGGAAGAC+CGG | 0.522460 | 3:+89950627 | None:intergenic |
| ACAGCAGCACCAATAGCAGC+AGG | 0.523328 | 3:+89949548 | None:intergenic |
| GCAATAGTCGTTGATATTGA+CGG | 0.523932 | 3:-89949512 | MsG0380016955.01.T01:CDS |
| ACTAGGAATCTTAGGTAACC+TGG | 0.525532 | 3:+89950267 | None:intergenic |
| GGATGAGCGAGCGTAGCCTT+CGG | 0.525610 | 3:+89950648 | None:intergenic |
| AGAAGCCATTCAGAAAATGT+TGG | 0.526335 | 3:-89949234 | MsG0380016955.01.T01:CDS |
| TGTTCTAACTGCGCCTCACT+AGG | 0.528037 | 3:+89950250 | None:intergenic |
| CTGACTAAGTTGGTGGCACC+GGG | 0.530079 | 3:+89950592 | None:intergenic |
| GGTGGCACCGGGACCAGAAG+TGG | 0.531046 | 3:+89950603 | None:intergenic |
| TCACTGAGGGTGATGGAAGA+AGG | 0.531460 | 3:-89949118 | MsG0380016955.01.T01:CDS |
| GAATGGCTCGTCGTCGGTGG+TGG | 0.531865 | 3:+89950861 | None:intergenic |
| ATTCTAGTGAGGAATTGAAC+CGG | 0.535594 | 3:-89950165 | MsG0380016955.01.T01:CDS |
| AAAGCTTCTTTGACAACCCT+AGG | 0.536257 | 3:+89950406 | None:intergenic |
| TTAGGTTGTTACCCTATTGG+AGG | 0.536424 | 3:-89950097 | MsG0380016955.01.T01:CDS |
| TGCGAGGCCGCTGACTAAGT+TGG | 0.540117 | 3:+89950582 | None:intergenic |
| CGCTGCCTTCACTTCAACCA+TGG | 0.540501 | 3:-89951058 | MsG0380016955.01.T01:CDS |
| TGCGGATATGAAGGTGGCGT+TGG | 0.543600 | 3:-89949864 | MsG0380016955.01.T01:CDS |
| CTTCTTGGTCACACGAGCAG+CGG | 0.545119 | 3:+89949268 | None:intergenic |
| GGTGGAGTCTTCGCCGCCGA+AGG | 0.545206 | 3:-89950664 | MsG0380016955.01.T01:CDS |
| GATTGTAAACGTAGTAGTTG+AGG | 0.547943 | 3:+89951247 | None:intergenic |
| CGGGGCGGCCCGAAGTTGCA+AGG | 0.550870 | 3:+89950380 | None:intergenic |
| TGATGTTGAAGATATTCCTA+GGG | 0.552117 | 3:-89950422 | MsG0380016955.01.T01:CDS |
| GGCTGCCATGGTTGAAGTGA+AGG | 0.552484 | 3:+89951053 | None:intergenic |
| GTCGATTTGTGCGGATATGA+AGG | 0.553853 | 3:-89949873 | MsG0380016955.01.T01:CDS |
| TGGAACGGGTGAGAGCTTGG+TGG | 0.554430 | 3:+89950722 | None:intergenic |
| GAGGAGAAACGAGAGATGAA+TGG | 0.554571 | 3:+89950844 | None:intergenic |
| ACCAACGTCTTCGCTTACCC+TGG | 0.560240 | 3:-89950763 | MsG0380016955.01.T01:CDS |
| AGTAGTAGTGGTGGCTGCCA+TGG | 0.560243 | 3:+89951041 | None:intergenic |
| TTCTTGGTCACACGAGCAGC+GGG | 0.560773 | 3:+89949269 | None:intergenic |
| CAATGAGAACCGGGCCGGGG+CGG | 0.561210 | 3:+89950365 | None:intergenic |
| TTAATGGGCTCGGACCAATT+CGG | 0.564583 | 3:+89950307 | None:intergenic |
| GAGAGCTTGGTGGATCTCCA+TGG | 0.565285 | 3:+89950732 | None:intergenic |
| GATCTCGTTACTTCAACTAT+CGG | 0.566066 | 3:+89950472 | None:intergenic |
| GAGGCCGCTGACTAAGTTGG+TGG | 0.569458 | 3:+89950585 | None:intergenic |
| AGAGAGAGGGAATGTGAGTG+TGG | 0.569950 | 3:+89950969 | None:intergenic |
| AAAGTGGGGTGCGAATAGAA+AGG | 0.570405 | 3:+89951006 | None:intergenic |
| CCGAGCCCATTAAGCTAACC+GGG | 0.571969 | 3:-89950297 | MsG0380016955.01.T01:CDS |
| TGTTTGTGGTGTGTATCTCT+CGG | 0.573611 | 3:+89951277 | None:intergenic |
| GTCGTTGATATTGACGGGGA+TGG | 0.574168 | 3:-89949506 | MsG0380016955.01.T01:CDS |
| TTGTTGAATAATCAACATCT+GGG | 0.577937 | 3:-89949416 | MsG0380016955.01.T01:CDS |
| AGACTCCACCTTGTTCGTGA+CGG | 0.580662 | 3:+89950677 | None:intergenic |
| GAATAATCAACATCTGGGTA+TGG | 0.582765 | 3:-89949411 | MsG0380016955.01.T01:CDS |
| GGTTGAGAATGGGAGAGAGA+GGG | 0.583717 | 3:+89950956 | None:intergenic |
| GCTATTGTTAGTACTGGTGT+TGG | 0.584499 | 3:-89949665 | MsG0380016955.01.T01:CDS |
| TTCAAGGATGTGATCACTGA+GGG | 0.586917 | 3:-89949131 | MsG0380016955.01.T01:CDS |
| CGCTGCTCGTGTGACCAAGA+AGG | 0.589712 | 3:-89949267 | MsG0380016955.01.T01:CDS |
| TCTCCATGGAAGCGCCGCCA+GGG | 0.592923 | 3:+89950746 | None:intergenic |
| AGGCAGTGGTTAACTTCTGG+TGG | 0.593875 | 3:-89949596 | MsG0380016955.01.T01:CDS |
| AGAGATGAATGGCTCGTCGT+CGG | 0.597419 | 3:+89950855 | None:intergenic |
| GATGAATGGCTCGTCGTCGG+TGG | 0.598166 | 3:+89950858 | None:intergenic |
| TTGCCAATGATTCCCAGCAA+TGG | 0.598579 | 3:-89949158 | MsG0380016955.01.T01:CDS |
| TGTATCTCTCGGAAGCACTT+GGG | 0.601374 | 3:+89951288 | None:intergenic |
| TCTTGGTGACCCTTCTAAGG+AGG | 0.602410 | 3:-89949339 | MsG0380016955.01.T01:CDS |
| CCAGAAGTTAACCACTGCCT+AGG | 0.604243 | 3:+89949599 | None:intergenic |
| GATTCCGACACGAGAGTGAG+TGG | 0.607991 | 3:+89950924 | None:intergenic |
| AGTATAAGAGACCTAGGCAG+TGG | 0.611210 | 3:-89949610 | MsG0380016955.01.T01:CDS |
| AAAACCACTCACTCTCGTGT+CGG | 0.612194 | 3:-89950928 | MsG0380016955.01.T01:CDS |
| TCAAATGTCTTAAAACCAAG+AGG | 0.614018 | 3:+89949746 | None:intergenic |
| AAATCTCATCCTCCTTAGAA+GGG | 0.616731 | 3:+89949330 | None:intergenic |
| TCCTTGAATGAACCATTGCT+GGG | 0.619533 | 3:+89949146 | None:intergenic |
| TGGTTGTTTGAATTCTAGTG+AGG | 0.619960 | 3:-89950176 | MsG0380016955.01.T01:CDS |
| TGAGCGAGCGTAGCCTTCGG+CGG | 0.621739 | 3:+89950651 | None:intergenic |
| GGCAATACATGCTCTTGATG+AGG | 0.622360 | 3:+89949176 | None:intergenic |
| TAAGGCTTCAACGAGAATGT+CGG | 0.623788 | 3:+89950801 | None:intergenic |
| CTCCACCTTGTTCGTGACGG+GGG | 0.626976 | 3:+89950680 | None:intergenic |
| TGGAGAGTAAAGGAATCAAG+GGG | 0.627686 | 3:-89949823 | MsG0380016955.01.T01:CDS |
| TGGGTACATCAATGAGAACC+GGG | 0.630749 | 3:+89950356 | None:intergenic |
| AGAGATACACACCACAAACA+AGG | 0.631035 | 3:-89951274 | MsG0380016955.01.T01:CDS |
| TCCACATGTGTCGATTTGTG+CGG | 0.632739 | 3:-89949882 | MsG0380016955.01.T01:CDS |
| ACTCCACCTTGTTCGTGACG+GGG | 0.634468 | 3:+89950679 | None:intergenic |
| GACCGGTAATAGCGATGAGA+GGG | 0.634896 | 3:+89950539 | None:intergenic |
| ATGGGAGGATAGATTCTACA+AGG | 0.638443 | 3:-89949381 | MsG0380016955.01.T01:CDS |
| GTTACCTAAGATTCCTAGTG+AGG | 0.640530 | 3:-89950263 | MsG0380016955.01.T01:CDS |
| GAGAGGGAATGTGAGTGTGG+TGG | 0.641228 | 3:+89950972 | None:intergenic |
| GAAGTGGCGATACAAACGCC+GGG | 0.644811 | 3:+89950619 | None:intergenic |
| GGTGCCACCAACTTAGTCAG+CGG | 0.645852 | 3:-89950589 | MsG0380016955.01.T01:CDS |
| ATGCCATCAAAATTACTACA+AGG | 0.647606 | 3:+89948960 | None:intergenic |
| GATGTGATCACTGAGGGTGA+TGG | 0.648791 | 3:-89949125 | MsG0380016955.01.T01:CDS |
| AGGTAACCTGGATAAATACC+CGG | 0.649250 | 3:+89950279 | None:intergenic |
| GGGTATGGTTGTTCAATGGG+AGG | 0.651476 | 3:-89949396 | MsG0380016955.01.T01:CDS |
| GTATAACAATGTGTGTTGTG+TGG | 0.651504 | 3:-89951343 | None:intergenic |
| TGACCGGTAATAGCGATGAG+AGG | 0.651599 | 3:+89950538 | None:intergenic |
| ACATCAAGAAGATAAGGACC+AGG | 0.655550 | 3:+89949206 | None:intergenic |
| TCCGCACAAATCGACACATG+TGG | 0.659601 | 3:+89949881 | None:intergenic |
| GTTGAAGCCTTAGAACGCGA+AGG | 0.665145 | 3:-89950790 | MsG0380016955.01.T01:CDS |
| AACGTCTTCGCTTACCCTGG+CGG | 0.670998 | 3:-89950760 | MsG0380016955.01.T01:CDS |
| TCTGGAAGGAGTAGTAGTGG+TGG | 0.671721 | 3:+89951032 | None:intergenic |
| TATCAACGACTATTGCATCA+GGG | 0.673446 | 3:+89949519 | None:intergenic |
| GAATAGAAAGGAGATCTGGA+AGG | 0.682671 | 3:+89951018 | None:intergenic |
| TATCCATCAAAGCGTCTGCG+AGG | 0.682987 | 3:+89950566 | None:intergenic |
| GTGCTTGATGAATTGACGAA+TGG | 0.687054 | 3:-89949692 | MsG0380016955.01.T01:CDS |
| TGGTGCGTTTAGGGAAAGTG+GGG | 0.694082 | 3:+89950992 | None:intergenic |
| AGAAGTGGCGATACAAACGC+CGG | 0.706676 | 3:+89950618 | None:intergenic |
| AGCACCTGAATAGCATACTG+AGG | 0.708235 | 3:+89949710 | None:intergenic |
| GATTTGTGCGGATATGAAGG+TGG | 0.709634 | 3:-89949870 | MsG0380016955.01.T01:CDS |
| GTGGCCTAAATCTAATGTCA+CGG | 0.718985 | 3:-89951324 | MsG0380016955.01.T01:CDS |
| GTGTTGGACAGCATCAAATG+TGG | 0.727126 | 3:-89949649 | MsG0380016955.01.T01:CDS |
| GCCAGGGTAAGCGAAGACGT+TGG | 0.733609 | 3:+89950762 | None:intergenic |
| ATTCAAGGATGTGATCACTG+AGG | 0.744694 | 3:-89949132 | MsG0380016955.01.T01:CDS |
| AATAGTCGTTGATATTGACG+GGG | 0.747018 | 3:-89949510 | MsG0380016955.01.T01:CDS |
| TCGGTTCCGATCATTCTCCG+GGG | 0.760009 | 3:+89950511 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAGTTAATTGAATACTAAAA+CGG | + | Chr3:89951332-89951351 | None:intergenic | 15.0% |
| !!! | AAAAAACCTGTTTTATATGT+TGG | - | Chr3:89949903-89949922 | MsG0380016955.01.T01:CDS | 20.0% |
| ! | ACAATAACATCAAGAAGATA+AGG | + | Chr3:89950908-89950927 | None:intergenic | 25.0% |
| ! | ATTGTACAAAACAACACATA+AGG | + | Chr3:89951052-89951071 | None:intergenic | 25.0% |
| ! | TTGTTGAATAATCAACATCT+GGG | - | Chr3:89950689-89950708 | MsG0380016955.01.T01:CDS | 25.0% |
| AATAGAGCTCATACTTATCT+TGG | - | Chr3:89950749-89950768 | MsG0380016955.01.T01:CDS | 30.0% | |
| ATGCCATCAAAATTACTACA+AGG | + | Chr3:89951148-89951167 | None:intergenic | 30.0% | |
| ATTGTAAACGTAGTAGTTGA+GGG | + | Chr3:89948860-89948879 | None:intergenic | 30.0% | |
| CTCACTACAGCAAATAAAAA+CGG | + | Chr3:89951207-89951226 | None:intergenic | 30.0% | |
| GAACATTCTCTTTCAATGTT+GGG | - | Chr3:89950032-89950051 | MsG0380016955.01.T01:CDS | 30.0% | |
| GTTGTTGAATAATCAACATC+TGG | - | Chr3:89950688-89950707 | MsG0380016955.01.T01:CDS | 30.0% | |
| TATAAGAGTAGAGAATCTTC+CGG | - | Chr3:89950655-89950674 | MsG0380016955.01.T01:CDS | 30.0% | |
| TATAATGAACGTTCAAGAGT+TGG | - | Chr3:89950628-89950647 | MsG0380016955.01.T01:CDS | 30.0% | |
| TCAAATGTCTTAAAACCAAG+AGG | + | Chr3:89950362-89950381 | None:intergenic | 30.0% | |
| TGAACATTCTCTTTCAATGT+TGG | - | Chr3:89950031-89950050 | MsG0380016955.01.T01:CDS | 30.0% | |
| TGATGTTGAAGATATTCCTA+GGG | - | Chr3:89949683-89949702 | MsG0380016955.01.T01:CDS | 30.0% | |
| TTGATGTTGAAGATATTCCT+AGG | - | Chr3:89949682-89949701 | MsG0380016955.01.T01:CDS | 30.0% | |
| TTTACAAGTATAAGAGACCT+AGG | - | Chr3:89950489-89950508 | MsG0380016955.01.T01:CDS | 30.0% | |
| ! | AAACCTGTTTTATATGTTGG+TGG | - | Chr3:89949906-89949925 | MsG0380016955.01.T01:CDS | 30.0% |
| ! | AATATTGTTGTTCTGTTCAG+GGG | + | Chr3:89948999-89949018 | None:intergenic | 30.0% |
| ! | AGTTGTTGTTGAACATCTTT+GGG | + | Chr3:89949771-89949790 | None:intergenic | 30.0% |
| ! | GAATATTGTTGTTCTGTTCA+GGG | + | Chr3:89949000-89949019 | None:intergenic | 30.0% |
| ! | GATGTTGATTATTCAACAAC+AGG | + | Chr3:89950688-89950707 | None:intergenic | 30.0% |
| ! | TGTCCTTGTAGTAATTTTGA+TGG | - | Chr3:89951142-89951161 | MsG0380016955.01.T01:intron | 30.0% |
| !! | ATATTGATTCAGCTGAGATT+GGG | - | Chr3:89950189-89950208 | MsG0380016955.01.T01:CDS | 30.0% |
| !!! | AATAGAGTTTTGGAGAGTAA+AGG | - | Chr3:89950272-89950291 | MsG0380016955.01.T01:CDS | 30.0% |
| !!! | TCTTGGTTTTAAGACATTTG+AGG | - | Chr3:89950361-89950380 | MsG0380016955.01.T01:CDS | 30.0% |
| AAAATCTCATCCTCCTTAGA+AGG | + | Chr3:89950779-89950798 | None:intergenic | 35.0% | |
| AAATCTCATCCTCCTTAGAA+GGG | + | Chr3:89950778-89950797 | None:intergenic | 35.0% | |
| AATAGTCGTTGATATTGACG+GGG | - | Chr3:89950595-89950614 | MsG0380016955.01.T01:CDS | 35.0% | |
| ACTACAGCAAATAAAAACGG+TGG | + | Chr3:89951204-89951223 | None:intergenic | 35.0% | |
| AGAAGCCATTCAGAAAATGT+TGG | - | Chr3:89950871-89950890 | MsG0380016955.01.T01:CDS | 35.0% | |
| ATATCAACGACTATTGCATC+AGG | + | Chr3:89950590-89950609 | None:intergenic | 35.0% | |
| ATTCTAGTGAGGAATTGAAC+CGG | - | Chr3:89949940-89949959 | MsG0380016955.01.T01:CDS | 35.0% | |
| CAAGGACACAAAACTAAACT+AGG | + | Chr3:89951130-89951149 | None:intergenic | 35.0% | |
| CAATAGTCGTTGATATTGAC+GGG | - | Chr3:89950594-89950613 | MsG0380016955.01.T01:CDS | 35.0% | |
| CAGAAGTTGAAATTTCCTCT+TGG | - | Chr3:89950344-89950363 | MsG0380016955.01.T01:CDS | 35.0% | |
| GAATAATCAACATCTGGGTA+TGG | - | Chr3:89950694-89950713 | MsG0380016955.01.T01:CDS | 35.0% | |
| GATCTCGTTACTTCAACTAT+CGG | + | Chr3:89949636-89949655 | None:intergenic | 35.0% | |
| GATTGTAAACGTAGTAGTTG+AGG | + | Chr3:89948861-89948880 | None:intergenic | 35.0% | |
| GCAATAGTCGTTGATATTGA+CGG | - | Chr3:89950593-89950612 | MsG0380016955.01.T01:CDS | 35.0% | |
| TATCAACGACTATTGCATCA+GGG | + | Chr3:89950589-89950608 | None:intergenic | 35.0% | |
| TGGTTGTTTGAATTCTAGTG+AGG | - | Chr3:89949929-89949948 | MsG0380016955.01.T01:CDS | 35.0% | |
| TTCAACAACAGGATCTTAAC+CGG | + | Chr3:89950677-89950696 | None:intergenic | 35.0% | |
| TTGGAGAGTAAAGGAATCAA+GGG | - | Chr3:89950281-89950300 | MsG0380016955.01.T01:CDS | 35.0% | |
| TTTGGAGAGTAAAGGAATCA+AGG | - | Chr3:89950280-89950299 | MsG0380016955.01.T01:CDS | 35.0% | |
| ! | AGAAGGAGTTATTGATTGCT+CGG | - | Chr3:89951004-89951023 | MsG0380016955.01.T01:CDS | 35.0% |
| ! | AGGTTTGATGATAGAGTTAC+TGG | - | Chr3:89950122-89950141 | MsG0380016955.01.T01:CDS | 35.0% |
| ! | AGTGTCCAACATTTTCTGAA+TGG | + | Chr3:89950879-89950898 | None:intergenic | 35.0% |
| ! | AGTTAGAAGCTTTTGCTAGT+AGG | - | Chr3:89950147-89950166 | MsG0380016955.01.T01:CDS | 35.0% |
| ! | CGAATATTGTTGTTCTGTTC+AGG | + | Chr3:89949001-89949020 | None:intergenic | 35.0% |
| ! | GAGTTGTTGTTGAACATCTT+TGG | + | Chr3:89949772-89949791 | None:intergenic | 35.0% |
| ! | GGAAGGTCTTAATAGAGTTT+TGG | - | Chr3:89950262-89950281 | MsG0380016955.01.T01:CDS | 35.0% |
| ! | GTTAGAAGCTTTTGCTAGTA+GGG | - | Chr3:89950148-89950167 | MsG0380016955.01.T01:CDS | 35.0% |
| !! | AAATACCCGGTTAGCTTAAT+GGG | + | Chr3:89949816-89949835 | None:intergenic | 35.0% |
| !! | GATATTGATTCAGCTGAGAT+TGG | - | Chr3:89950188-89950207 | MsG0380016955.01.T01:CDS | 35.0% |
| !! | TAAATACCCGGTTAGCTTAA+TGG | + | Chr3:89949817-89949836 | None:intergenic | 35.0% |
| !!! | AGCTTTTTTCCTTGCAACTT+CGG | - | Chr3:89949716-89949735 | MsG0380016955.01.T01:CDS | 35.0% |
| !!! | GTTTTTGGTTGGTTGAGAAT+GGG | + | Chr3:89949162-89949181 | None:intergenic | 35.0% |
| AAAGCTTCTTTGACAACCCT+AGG | + | Chr3:89949702-89949721 | None:intergenic | 40.0% | |
| ACATCAAGAAGATAAGGACC+AGG | + | Chr3:89950902-89950921 | None:intergenic | 40.0% | |
| ACTAGGAATCTTAGGTAACC+TGG | + | Chr3:89949841-89949860 | None:intergenic | 40.0% | |
| AGAGAATGTTCACCTCCAAT+AGG | + | Chr3:89950023-89950042 | None:intergenic | 40.0% | |
| AGAGATACACACCACAAACA+AGG | - | Chr3:89948831-89948850 | MsG0380016955.01.T01:three_prime_UTR | 40.0% | |
| AGGTAACCTGGATAAATACC+CGG | + | Chr3:89949829-89949848 | None:intergenic | 40.0% | |
| ATCCTTGAATGAACCATTGC+TGG | + | Chr3:89950963-89950982 | None:intergenic | 40.0% | |
| ATCTGGGTATGGTTGTTCAA+TGG | - | Chr3:89950705-89950724 | MsG0380016955.01.T01:CDS | 40.0% | |
| ATGGGAGGATAGATTCTACA+AGG | - | Chr3:89950724-89950743 | MsG0380016955.01.T01:CDS | 40.0% | |
| ATTCAAGGATGTGATCACTG+AGG | - | Chr3:89950973-89950992 | MsG0380016955.01.T01:CDS | 40.0% | |
| CAGCAAATCCAAGCATGTTA+GGG | + | Chr3:89950802-89950821 | None:intergenic | 40.0% | |
| CCACCACCAACATATAAAAC+AGG | + | Chr3:89949912-89949931 | None:intergenic | 40.0% | |
| CCTGTTGCTAGTACTTTGAT+GGG | - | Chr3:89949984-89950003 | MsG0380016955.01.T01:CDS | 40.0% | |
| CTTTCAATGTTGGGTATGCA+TGG | - | Chr3:89950041-89950060 | MsG0380016955.01.T01:CDS | 40.0% | |
| GAATAGAAAGGAGATCTGGA+AGG | + | Chr3:89949090-89949109 | None:intergenic | 40.0% | |
| GAGAATGTTCACCTCCAATA+GGG | + | Chr3:89950022-89950041 | None:intergenic | 40.0% | |
| GCTAGTACTTTGATGGGATT+AGG | - | Chr3:89949990-89950009 | MsG0380016955.01.T01:CDS | 40.0% | |
| GGTGATGCTATTGTTAGTAC+TGG | - | Chr3:89950434-89950453 | MsG0380016955.01.T01:CDS | 40.0% | |
| GTCACCGTGACATTAGATTT+AGG | + | Chr3:89948788-89948807 | None:intergenic | 40.0% | |
| GTGCTTGATGAATTGACGAA+TGG | - | Chr3:89950413-89950432 | MsG0380016955.01.T01:CDS | 40.0% | |
| GTGGCCTAAATCTAATGTCA+CGG | - | Chr3:89948781-89948800 | MsG0380016955.01.T01:three_prime_UTR | 40.0% | |
| GTTACCTAAGATTCCTAGTG+AGG | - | Chr3:89949842-89949861 | MsG0380016955.01.T01:CDS | 40.0% | |
| TAAGGCTTCAACGAGAATGT+CGG | + | Chr3:89949307-89949326 | None:intergenic | 40.0% | |
| TCAGCAAATCCAAGCATGTT+AGG | + | Chr3:89950803-89950822 | None:intergenic | 40.0% | |
| TCCTGTTGCTAGTACTTTGA+TGG | - | Chr3:89949983-89950002 | MsG0380016955.01.T01:CDS | 40.0% | |
| TCCTTGAATGAACCATTGCT+GGG | + | Chr3:89950962-89950981 | None:intergenic | 40.0% | |
| TCTGGGTATGGTTGTTCAAT+GGG | - | Chr3:89950706-89950725 | MsG0380016955.01.T01:CDS | 40.0% | |
| TGGAGAGTAAAGGAATCAAG+GGG | - | Chr3:89950282-89950301 | MsG0380016955.01.T01:CDS | 40.0% | |
| TGTTTGTGGTGTGTATCTCT+CGG | + | Chr3:89948831-89948850 | None:intergenic | 40.0% | |
| TTCAAGGATGTGATCACTGA+GGG | - | Chr3:89950974-89950993 | MsG0380016955.01.T01:CDS | 40.0% | |
| TTCTCTAAGCTCTTCCTTCT+TGG | + | Chr3:89950855-89950874 | None:intergenic | 40.0% | |
| TTGGGTACATCAATGAGAAC+CGG | + | Chr3:89949753-89949772 | None:intergenic | 40.0% | |
| TTTGGATTACCTGCTGCTAT+TGG | - | Chr3:89950548-89950567 | MsG0380016955.01.T01:CDS | 40.0% | |
| ! | CAAGGGGAAACTTGATTTTG+AGG | - | Chr3:89950298-89950317 | MsG0380016955.01.T01:CDS | 40.0% |
| ! | CGGTGTTTCTTGAAAAGCAT+CGG | + | Chr3:89949616-89949635 | None:intergenic | 40.0% |
| ! | GAAGGAGTTATTGATTGCTC+GGG | - | Chr3:89951005-89951024 | MsG0380016955.01.T01:CDS | 40.0% |
| ! | GAGAATGTTACGGATGGTTT+TGG | + | Chr3:89949406-89949425 | None:intergenic | 40.0% |
| ! | GAGATTTTCCCTAACATGCT+TGG | - | Chr3:89950791-89950810 | MsG0380016955.01.T01:CDS | 40.0% |
| ! | GGATTAGGTTGTTACCCTAT+TGG | - | Chr3:89950005-89950024 | MsG0380016955.01.T01:CDS | 40.0% |
| ! | TTAGGTTGTTACCCTATTGG+AGG | - | Chr3:89950008-89950027 | MsG0380016955.01.T01:CDS | 40.0% |
| ! | TTATCTTGGTGACCCTTCTA+AGG | - | Chr3:89950763-89950782 | MsG0380016955.01.T01:CDS | 40.0% |
| !! | AGTGATCTGTTGCTTGCTTT+TGG | - | Chr3:89950095-89950114 | MsG0380016955.01.T01:CDS | 40.0% |
| !! | CCTGTTTTATATGTTGGTGG+TGG | - | Chr3:89949909-89949928 | MsG0380016955.01.T01:CDS | 40.0% |
| !! | GCTATTGTTAGTACTGGTGT+TGG | - | Chr3:89950440-89950459 | MsG0380016955.01.T01:CDS | 40.0% |
| !! | GTGATCTGTTGCTTGCTTTT+GGG | - | Chr3:89950096-89950115 | MsG0380016955.01.T01:CDS | 40.0% |
| !! | TGATCTGTTGCTTGCTTTTG+GGG | - | Chr3:89950097-89950116 | MsG0380016955.01.T01:CDS | 40.0% |
| !!! | AACTTGATTTTGAGGCATGG+AGG | - | Chr3:89950306-89950325 | MsG0380016955.01.T01:CDS | 40.0% |
| !!! | GCTTTTTTCCTTGCAACTTC+GGG | - | Chr3:89949717-89949736 | MsG0380016955.01.T01:CDS | 40.0% |
| !!! | GGAAACTTGATTTTGAGGCA+TGG | - | Chr3:89950303-89950322 | MsG0380016955.01.T01:CDS | 40.0% |
| !!! | GGTTTTTGGTTGGTTGAGAA+TGG | + | Chr3:89949163-89949182 | None:intergenic | 40.0% |
| !!! | TGTTACGGATGGTTTTGGAA+CGG | + | Chr3:89949401-89949420 | None:intergenic | 40.0% |
| AAAACCACTCACTCTCGTGT+CGG | - | Chr3:89949177-89949196 | MsG0380016955.01.T01:CDS | 45.0% | |
| AAAGCAGCAGCAAAAAGGCA+AGG | - | Chr3:89948898-89948917 | MsG0380016955.01.T01:three_prime_UTR | 45.0% | |
| AAAGTGGGGTGCGAATAGAA+AGG | + | Chr3:89949102-89949121 | None:intergenic | 45.0% | |
| AACAACTCGCTGTTCCGAAT+TGG | - | Chr3:89949784-89949803 | MsG0380016955.01.T01:CDS | 45.0% | |
| AAGCAGCAGCAAAAAGGCAA+GGG | - | Chr3:89948899-89948918 | MsG0380016955.01.T01:three_prime_UTR | 45.0% | |
| AGATCTGGAAGGAGTAGTAG+TGG | + | Chr3:89949079-89949098 | None:intergenic | 45.0% | |
| AGCACCTGAATAGCATACTG+AGG | + | Chr3:89950398-89950417 | None:intergenic | 45.0% | |
| AGCTAACCGGGTATTTATCC+AGG | - | Chr3:89949820-89949839 | MsG0380016955.01.T01:CDS | 45.0% | |
| AGTATAAGAGACCTAGGCAG+TGG | - | Chr3:89950495-89950514 | MsG0380016955.01.T01:CDS | 45.0% | |
| CAACCAAAGCAGCAGCAAAA+AGG | - | Chr3:89948893-89948912 | MsG0380016955.01.T01:three_prime_UTR | 45.0% | |
| CACCAGTTAACTCCACAAAC+CGG | + | Chr3:89949962-89949981 | None:intergenic | 45.0% | |
| CAGAAAATGTTGGACACTCC+TGG | - | Chr3:89950881-89950900 | MsG0380016955.01.T01:CDS | 45.0% | |
| CGGTGGTACAACAACAACTA+TGG | + | Chr3:89951187-89951206 | None:intergenic | 45.0% | |
| GAACCATTGCTGGGAATCAT+TGG | + | Chr3:89950953-89950972 | None:intergenic | 45.0% | |
| GAGGAGAAACGAGAGATGAA+TGG | + | Chr3:89949264-89949283 | None:intergenic | 45.0% | |
| GATTTGTGCGGATATGAAGG+TGG | - | Chr3:89950235-89950254 | MsG0380016955.01.T01:CDS | 45.0% | |
| GGCAATACATGCTCTTGATG+AGG | + | Chr3:89950932-89950951 | None:intergenic | 45.0% | |
| GTGCGAATAGAAAGGAGATC+TGG | + | Chr3:89949094-89949113 | None:intergenic | 45.0% | |
| GTGTTGGACAGCATCAAATG+TGG | - | Chr3:89950456-89950475 | MsG0380016955.01.T01:CDS | 45.0% | |
| TCCCAGCAATGGTTCATTCA+AGG | - | Chr3:89950958-89950977 | MsG0380016955.01.T01:CDS | 45.0% | |
| TGGGTACATCAATGAGAACC+GGG | + | Chr3:89949752-89949771 | None:intergenic | 45.0% | |
| TTCGCCTCAGTATGCTATTC+AGG | - | Chr3:89950391-89950410 | MsG0380016955.01.T01:CDS | 45.0% | |
| TTGCCAATGATTCCCAGCAA+TGG | - | Chr3:89950947-89950966 | MsG0380016955.01.T01:CDS | 45.0% | |
| ! | ACACGAGAGTGAGTGGTTTT+TGG | + | Chr3:89949177-89949196 | None:intergenic | 45.0% |
| ! | CCCATCAAAGTACTAGCAAC+AGG | + | Chr3:89949987-89950006 | None:intergenic | 45.0% |
| ! | CGCAGTTAGAACAGGTTTTG+AGG | - | Chr3:89949865-89949884 | MsG0380016955.01.T01:CDS | 45.0% |
| !! | AACCGGTTTGTGGAGTTAAC+TGG | - | Chr3:89949957-89949976 | MsG0380016955.01.T01:CDS | 45.0% |
| !! | CTTGGATTTGCTGATGCTTG+CGG | - | Chr3:89950809-89950828 | MsG0380016955.01.T01:CDS | 45.0% |
| !! | GTCGATTTGTGCGGATATGA+AGG | - | Chr3:89950232-89950251 | MsG0380016955.01.T01:CDS | 45.0% |
| !! | TCCACATGTGTCGATTTGTG+CGG | - | Chr3:89950223-89950242 | MsG0380016955.01.T01:CDS | 45.0% |
| !! | TGAGGAATTGAACCGGTTTG+TGG | - | Chr3:89949947-89949966 | MsG0380016955.01.T01:CDS | 45.0% |
| !! | TGCTGCTTTGGTTGTTGTGT+GGG | + | Chr3:89948887-89948906 | None:intergenic | 45.0% |
| !! | TGGTTAACTTCTGGTGGACT+TGG | - | Chr3:89950515-89950534 | MsG0380016955.01.T01:CDS | 45.0% |
| !! | TGTATCTCTCGGAAGCACTT+GGG | + | Chr3:89948820-89948839 | None:intergenic | 45.0% |
| !! | TTAATGGGCTCGGACCAATT+CGG | + | Chr3:89949801-89949820 | None:intergenic | 45.0% |
| !! | TTGCCTTTTTGCTGCTGCTT+TGG | + | Chr3:89948899-89948918 | None:intergenic | 45.0% |
| !!! | GAGAGTGAGTGGTTTTTGGT+TGG | + | Chr3:89949173-89949192 | None:intergenic | 45.0% |
| !!! | GTTACGGATGGTTTTGGAAC+GGG | + | Chr3:89949400-89949419 | None:intergenic | 45.0% |
| !!! | TGTTGCTTGCTTTTGGGGTT+AGG | - | Chr3:89950102-89950121 | MsG0380016955.01.T01:CDS | 45.0% |
| AGAAGTGGCGATACAAACGC+CGG | + | Chr3:89949490-89949509 | None:intergenic | 50.0% | |
| AGACTCCACCTTGTTCGTGA+CGG | + | Chr3:89949431-89949450 | None:intergenic | 50.0% | |
| AGAGAGAGGGAATGTGAGTG+TGG | + | Chr3:89949139-89949158 | None:intergenic | 50.0% | |
| AGAGATGAATGGCTCGTCGT+CGG | + | Chr3:89949253-89949272 | None:intergenic | 50.0% | |
| AGGCAGTGGTTAACTTCTGG+TGG | - | Chr3:89950509-89950528 | MsG0380016955.01.T01:CDS | 50.0% | |
| CAAGTTCCCCGGAGAATGAT+CGG | - | Chr3:89949588-89949607 | MsG0380016955.01.T01:CDS | 50.0% | |
| CCAGAAGTTAACCACTGCCT+AGG | + | Chr3:89950509-89950528 | None:intergenic | 50.0% | |
| CCTAGGCAGTGGTTAACTTC+TGG | - | Chr3:89950506-89950525 | MsG0380016955.01.T01:CDS | 50.0% | |
| CTATTACCGGTCAAGTTCCC+CGG | - | Chr3:89949577-89949596 | MsG0380016955.01.T01:CDS | 50.0% | |
| GACCGGTAATAGCGATGAGA+GGG | + | Chr3:89949569-89949588 | None:intergenic | 50.0% | |
| GATGTGATCACTGAGGGTGA+TGG | - | Chr3:89950980-89950999 | MsG0380016955.01.T01:CDS | 50.0% | |
| GGGTATGGTTGTTCAATGGG+AGG | - | Chr3:89950709-89950728 | MsG0380016955.01.T01:CDS | 50.0% | |
| GGTTGAGAATGGGAGAGAGA+GGG | + | Chr3:89949152-89949171 | None:intergenic | 50.0% | |
| GTCCCTCTCATCGCTATTAC+CGG | - | Chr3:89949564-89949583 | MsG0380016955.01.T01:CDS | 50.0% | |
| GTCGTTGATATTGACGGGGA+TGG | - | Chr3:89950599-89950618 | MsG0380016955.01.T01:CDS | 50.0% | |
| GTGGTGCGTTTAGGGAAAGT+GGG | + | Chr3:89949117-89949136 | None:intergenic | 50.0% | |
| GTTGAAGCCTTAGAACGCGA+AGG | - | Chr3:89949315-89949334 | MsG0380016955.01.T01:CDS | 50.0% | |
| TACATCAATGAGAACCGGGC+CGG | + | Chr3:89949748-89949767 | None:intergenic | 50.0% | |
| TAGTGAGGCGCAGTTAGAAC+AGG | - | Chr3:89949857-89949876 | MsG0380016955.01.T01:CDS | 50.0% | |
| TCCGAGCCCATTAAGCTAAC+CGG | - | Chr3:89949807-89949826 | MsG0380016955.01.T01:CDS | 50.0% | |
| TCCGCACAAATCGACACATG+TGG | + | Chr3:89950227-89950246 | None:intergenic | 50.0% | |
| TCTGGAAGGAGTAGTAGTGG+TGG | + | Chr3:89949076-89949095 | None:intergenic | 50.0% | |
| TGACCGGTAATAGCGATGAG+AGG | + | Chr3:89949570-89949589 | None:intergenic | 50.0% | |
| TGCGCCTCACTAGGAATCTT+AGG | + | Chr3:89949849-89949868 | None:intergenic | 50.0% | |
| TGGTGCGTTTAGGGAAAGTG+GGG | + | Chr3:89949116-89949135 | None:intergenic | 50.0% | |
| TGGTTGAGAATGGGAGAGAG+AGG | + | Chr3:89949153-89949172 | None:intergenic | 50.0% | |
| TGTTCTAACTGCGCCTCACT+AGG | + | Chr3:89949858-89949877 | None:intergenic | 50.0% | |
| ! | AGAATGTCGGAGCCTTTTCG+GGG | + | Chr3:89949294-89949313 | None:intergenic | 50.0% |
| ! | ATCGGTTCCGATCATTCTCC+GGG | + | Chr3:89949598-89949617 | None:intergenic | 50.0% |
| ! | CGAGAATGTCGGAGCCTTTT+CGG | + | Chr3:89949296-89949315 | None:intergenic | 50.0% |
| ! | GAGAATGTCGGAGCCTTTTC+GGG | + | Chr3:89949295-89949314 | None:intergenic | 50.0% |
| ! | GATATGAAGGTGGCGTTGGA+AGG | - | Chr3:89950245-89950264 | MsG0380016955.01.T01:CDS | 50.0% |
| ! | GTTGAGGGCTTCCTTGTTTG+TGG | + | Chr3:89948845-89948864 | None:intergenic | 50.0% |
| ! | TATCCATCAAAGCGTCTGCG+AGG | + | Chr3:89949542-89949561 | None:intergenic | 50.0% |
| ! | TCTTGGTGACCCTTCTAAGG+AGG | - | Chr3:89950766-89950785 | MsG0380016955.01.T01:CDS | 50.0% |
| ! | TGAGTGTGGTGGTGCGTTTA+GGG | + | Chr3:89949125-89949144 | None:intergenic | 50.0% |
| !! | CATCGGTTCCGATCATTCTC+CGG | + | Chr3:89949599-89949618 | None:intergenic | 50.0% |
| !! | CTGCTGCTTTGGTTGTTGTG+TGG | + | Chr3:89948888-89948907 | None:intergenic | 50.0% |
| !! | GTGTATCTCTCGGAAGCACT+TGG | + | Chr3:89948821-89948840 | None:intergenic | 50.0% |
| !! | TCACTGAGGGTGATGGAAGA+AGG | - | Chr3:89950987-89951006 | MsG0380016955.01.T01:CDS | 50.0% |
| !! | TCTGGTGGACTTGGTGCTAT+GGG | - | Chr3:89950524-89950543 | MsG0380016955.01.T01:CDS | 50.0% |
| !! | TTCTGGTGGACTTGGTGCTA+TGG | - | Chr3:89950523-89950542 | MsG0380016955.01.T01:CDS | 50.0% |
| !!! | GGACTTGGTGCTATGGGTTT+TGG | - | Chr3:89950530-89950549 | MsG0380016955.01.T01:CDS | 50.0% |
| !!! | TGATTTTGAGGCATGGAGGC+AGG | - | Chr3:89950310-89950329 | MsG0380016955.01.T01:CDS | 50.0% |
| !!! | TTTTGGAACGGGTGAGAGCT+TGG | + | Chr3:89949389-89949408 | None:intergenic | 50.0% |
| AACGTCTTCGCTTACCCTGG+CGG | - | Chr3:89949345-89949364 | MsG0380016955.01.T01:CDS | 55.0% | |
| ACAGCAGCACCAATAGCAGC+AGG | + | Chr3:89950560-89950579 | None:intergenic | 55.0% | |
| ACATCAATGAGAACCGGGCC+GGG | + | Chr3:89949747-89949766 | None:intergenic | 55.0% | |
| ACCAACGTCTTCGCTTACCC+TGG | - | Chr3:89949342-89949361 | MsG0380016955.01.T01:CDS | 55.0% | |
| ACGGGGGAGAATGTTACGGA+TGG | + | Chr3:89949412-89949431 | None:intergenic | 55.0% | |
| ACTCCACCTTGTTCGTGACG+GGG | + | Chr3:89949429-89949448 | None:intergenic | 55.0% | |
| AGTAGTAGTGGTGGCTGCCA+TGG | + | Chr3:89949067-89949086 | None:intergenic | 55.0% | |
| ATTCTCCCCCGTCACGAACA+AGG | - | Chr3:89949420-89949439 | MsG0380016955.01.T01:CDS | 55.0% | |
| CATTCTCCGGGGAACTTGAC+CGG | + | Chr3:89949586-89949605 | None:intergenic | 55.0% | |
| CCGAGCCCATTAAGCTAACC+GGG | - | Chr3:89949808-89949827 | MsG0380016955.01.T01:CDS | 55.0% | |
| CGCTGCCTTCACTTCAACCA+TGG | - | Chr3:89949047-89949066 | MsG0380016955.01.T01:three_prime_UTR | 55.0% | |
| CTTCTTGGTCACACGAGCAG+CGG | + | Chr3:89950840-89950859 | None:intergenic | 55.0% | |
| GAAGTGGCGATACAAACGCC+GGG | + | Chr3:89949489-89949508 | None:intergenic | 55.0% | |
| GACTCCACCTTGTTCGTGAC+GGG | + | Chr3:89949430-89949449 | None:intergenic | 55.0% | |
| GAGAGGGAATGTGAGTGTGG+TGG | + | Chr3:89949136-89949155 | None:intergenic | 55.0% | |
| GATACAAACGCCGGGAAGAC+CGG | + | Chr3:89949481-89949500 | None:intergenic | 55.0% | |
| GATTCCGACACGAGAGTGAG+TGG | + | Chr3:89949184-89949203 | None:intergenic | 55.0% | |
| GGCGTTTGTATCGCCACTTC+TGG | - | Chr3:89949489-89949508 | MsG0380016955.01.T01:CDS | 55.0% | |
| GGCTGCCATGGTTGAAGTGA+AGG | + | Chr3:89949055-89949074 | None:intergenic | 55.0% | |
| GGTAACGCCTTCGCGTTCTA+AGG | + | Chr3:89949325-89949344 | None:intergenic | 55.0% | |
| GGTGGTGCGTTTAGGGAAAG+TGG | + | Chr3:89949118-89949137 | None:intergenic | 55.0% | |
| TCGGTTCCGATCATTCTCCG+GGG | + | Chr3:89949597-89949616 | None:intergenic | 55.0% | |
| TGCGGATATGAAGGTGGCGT+TGG | - | Chr3:89950241-89950260 | MsG0380016955.01.T01:CDS | 55.0% | |
| TGTATCGCCACTTCTGGTCC+CGG | - | Chr3:89949495-89949514 | MsG0380016955.01.T01:CDS | 55.0% | |
| TTCTTGGTCACACGAGCAGC+GGG | + | Chr3:89950839-89950858 | None:intergenic | 55.0% | |
| ! | CGTGACGGGGGAGAATGTTA+CGG | + | Chr3:89949416-89949435 | None:intergenic | 55.0% |
| ! | GAGAGCTTGGTGGATCTCCA+TGG | + | Chr3:89949376-89949395 | None:intergenic | 55.0% |
| ! | GGTGCCACCAACTTAGTCAG+CGG | - | Chr3:89949516-89949535 | MsG0380016955.01.T01:CDS | 55.0% |
| ! | GTGAGTGTGGTGGTGCGTTT+AGG | + | Chr3:89949126-89949145 | None:intergenic | 55.0% |
| !! | CCCGGTTAGCTTAATGGGCT+CGG | + | Chr3:89949811-89949830 | None:intergenic | 55.0% |
| !! | CTGACTAAGTTGGTGGCACC+GGG | + | Chr3:89949516-89949535 | None:intergenic | 55.0% |
| !! | GCTGACTAAGTTGGTGGCAC+CGG | + | Chr3:89949517-89949536 | None:intergenic | 55.0% |
| CATCAATGAGAACCGGGCCG+GGG | + | Chr3:89949746-89949765 | None:intergenic | 60.0% | |
| CGCTGCTCGTGTGACCAAGA+AGG | - | Chr3:89950838-89950857 | MsG0380016955.01.T01:CDS | 60.0% | |
| CTCCACCTTGTTCGTGACGG+GGG | + | Chr3:89949428-89949447 | None:intergenic | 60.0% | |
| GAAGGCTACGCTCGCTCATC+CGG | - | Chr3:89949459-89949478 | MsG0380016955.01.T01:CDS | 60.0% | |
| GATGAATGGCTCGTCGTCGG+TGG | + | Chr3:89949250-89949269 | None:intergenic | 60.0% | |
| GCCAGGGTAAGCGAAGACGT+TGG | + | Chr3:89949346-89949365 | None:intergenic | 60.0% | |
| GGATGAGCGAGCGTAGCCTT+CGG | + | Chr3:89949460-89949479 | None:intergenic | 60.0% | |
| TCCTCCACCCAACCCCGAAA+AGG | - | Chr3:89949279-89949298 | MsG0380016955.01.T01:CDS | 60.0% | |
| TGGAACGGGTGAGAGCTTGG+TGG | + | Chr3:89949386-89949405 | None:intergenic | 60.0% | |
| TGGTGCGGTGGAGGGTTTGA+GGG | + | Chr3:89949214-89949233 | None:intergenic | 60.0% | |
| ! | GAGGCCGCTGACTAAGTTGG+TGG | + | Chr3:89949523-89949542 | None:intergenic | 60.0% |
| ! | TGCGAGGCCGCTGACTAAGT+TGG | + | Chr3:89949526-89949545 | None:intergenic | 60.0% |
| !! | GTCGGAGCCTTTTCGGGGTT+GGG | + | Chr3:89949289-89949308 | None:intergenic | 60.0% |
| !! | TGTCGGAGCCTTTTCGGGGT+TGG | + | Chr3:89949290-89949309 | None:intergenic | 60.0% |
| CGGCCTCGCAGACGCTTTGA+TGG | - | Chr3:89949536-89949555 | MsG0380016955.01.T01:CDS | 65.0% | |
| CTCCCCCGTCACGAACAAGG+TGG | - | Chr3:89949423-89949442 | MsG0380016955.01.T01:CDS | 65.0% | |
| GAATGGCTCGTCGTCGGTGG+TGG | + | Chr3:89949247-89949266 | None:intergenic | 65.0% | |
| GCTCGCTCATCCGGTCTTCC+CGG | - | Chr3:89949468-89949487 | MsG0380016955.01.T01:CDS | 65.0% | |
| GTGGAAGGTGGTGCGGTGGA+GGG | + | Chr3:89949222-89949241 | None:intergenic | 65.0% | |
| GTGGTGCGGTGGAGGGTTTG+AGG | + | Chr3:89949215-89949234 | None:intergenic | 65.0% | |
| TGAGCGAGCGTAGCCTTCGG+CGG | + | Chr3:89949457-89949476 | None:intergenic | 65.0% | |
| TTACCCTGGCGGCGCTTCCA+TGG | - | Chr3:89949356-89949375 | MsG0380016955.01.T01:CDS | 65.0% | |
| !! | ATCTCCATGGAAGCGCCGCC+AGG | + | Chr3:89949363-89949382 | None:intergenic | 65.0% |
| !! | GCCTTTTCGGGGTTGGGTGG+AGG | + | Chr3:89949283-89949302 | None:intergenic | 65.0% |
| !! | GGAGCCTTTTCGGGGTTGGG+TGG | + | Chr3:89949286-89949305 | None:intergenic | 65.0% |
| !! | GGTGGTGGTGGAAGGTGGTG+CGG | + | Chr3:89949229-89949248 | None:intergenic | 65.0% |
| !! | TCGGTGGTGGTGGTGGAAGG+TGG | + | Chr3:89949234-89949253 | None:intergenic | 65.0% |
| !! | TCGTCGGTGGTGGTGGTGGA+AGG | + | Chr3:89949237-89949256 | None:intergenic | 65.0% |
| !! | TCTCCATGGAAGCGCCGCCA+GGG | + | Chr3:89949362-89949381 | None:intergenic | 65.0% |
| CAATGAGAACCGGGCCGGGG+CGG | + | Chr3:89949743-89949762 | None:intergenic | 70.0% | |
| CTTGCAACTTCGGGCCGCCC+CGG | - | Chr3:89949726-89949745 | MsG0380016955.01.T01:CDS | 70.0% | |
| GGTGGAAGGTGGTGCGGTGG+AGG | + | Chr3:89949223-89949242 | None:intergenic | 70.0% | |
| GGTGGAGTCTTCGCCGCCGA+AGG | - | Chr3:89949441-89949460 | MsG0380016955.01.T01:CDS | 70.0% | |
| ! | GGTGGCACCGGGACCAGAAG+TGG | + | Chr3:89949505-89949524 | None:intergenic | 70.0% |
| ! | TGGCTCGTCGTCGGTGGTGG+TGG | + | Chr3:89949244-89949263 | None:intergenic | 70.0% |
| !! | CTCGTCGTCGGTGGTGGTGG+TGG | + | Chr3:89949241-89949260 | None:intergenic | 70.0% |
| !! | GGTGGTGGAAGGTGGTGCGG+TGG | + | Chr3:89949226-89949245 | None:intergenic | 70.0% |
| CGGGGCGGCCCGAAGTTGCA+AGG | + | Chr3:89949728-89949747 | None:intergenic | 75.0% | |
| ! | AACTTCGGGCCGCCCCGGCC+CGG | - | Chr3:89949731-89949750 | MsG0380016955.01.T01:CDS | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr3 | gene | 89948770 | 89951357 | 89948770 | ID=MsG0380016955.01;Name=MsG0380016955.01 |
| Chr3 | mRNA | 89948770 | 89951357 | 89948770 | ID=MsG0380016955.01.T01;Parent=MsG0380016955.01;Name=MsG0380016955.01.T01;_AED=0.21;_eAED=0.23;_QI=0|0|0|1|0|0|2|339|720 |
| Chr3 | exon | 89948770 | 89951120 | 89948770 | ID=MsG0380016955.01.T01:exon:3338;Parent=MsG0380016955.01.T01 |
| Chr3 | exon | 89951207 | 89951357 | 89951207 | ID=MsG0380016955.01.T01:exon:3337;Parent=MsG0380016955.01.T01 |
| Chr3 | CDS | 89951207 | 89951357 | 89951207 | ID=MsG0380016955.01.T01:cds;Parent=MsG0380016955.01.T01 |
| Chr3 | CDS | 89949109 | 89951120 | 89949109 | ID=MsG0380016955.01.T01:cds;Parent=MsG0380016955.01.T01 |
| Chr3 | three_prime_UTR | 89948770 | 89949108 | 89948770 | ID=MsG0380016955.01.T01:three_prime_utr;Parent=MsG0380016955.01.T01 |
| Gene Sequence |
| Protein sequence |
