AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0680032197.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680032197.01.T01 MTR_2g021255 96.970 231 7 0 6 236 93 323 1.85e-169 474
MsG0680032197.01.T01 MTR_2g021255 96.970 231 7 0 6 236 93 323 2.19e-169 473
MsG0680032197.01.T01 MTR_2g021242 91.775 231 19 0 6 236 93 323 9.42e-162 454
MsG0680032197.01.T01 MTR_3g065250 80.435 230 45 0 6 235 37 266 1.23e-142 403
MsG0680032197.01.T01 MTR_6g071070 79.221 231 48 0 6 236 37 267 1.89e-140 398
MsG0680032197.01.T01 MTR_5g077950 75.652 230 56 0 7 236 39 268 1.51e-133 380
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680032197.01.T01 AT5G35630 85.714 231 33 0 6 236 95 325 7.07e-152 429
MsG0680032197.01.T01 AT5G35630 85.714 231 33 0 6 236 95 325 7.07e-152 429
MsG0680032197.01.T01 AT5G35630 85.714 231 33 0 6 236 95 325 7.07e-152 429
MsG0680032197.01.T01 AT5G37600 79.654 231 47 0 6 236 37 267 3.94e-142 402
MsG0680032197.01.T01 AT1G66200 80.519 231 45 0 6 236 37 267 5.97e-142 402
MsG0680032197.01.T01 AT5G16570 79.221 231 48 0 6 236 37 267 3.15e-141 400
MsG0680032197.01.T01 AT1G66200 77.500 240 45 1 6 236 37 276 7.33e-139 394
MsG0680032197.01.T01 AT3G17820 74.892 231 58 0 6 236 37 267 1.37e-133 380
MsG0680032197.01.T01 AT1G66200 80.556 216 42 0 6 221 37 252 1.38e-132 375
MsG0680032197.01.T01 AT1G48470 72.294 231 64 0 6 236 37 267 1.45e-132 378
MsG0680032197.01.T01 AT5G16570 77.833 203 45 0 6 208 37 239 3.39e-121 345

Find 73 sgRNAs with CRISPR-Local

Find 125 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGAAGCTGGTGATCATATC+TGG 0.250556 6:-35990691 MsG0680032197.01.T01:CDS
TATAGTACCTCAATTGGTTT+TGG 0.253546 6:+35990421 None:intergenic
GCTTTATGTCTCTTATTTGT+AGG 0.306213 6:+35991511 None:intergenic
CGGGATGTCACACCAATTAC+AGG 0.332670 6:-35990309 MsG0680032197.01.T01:intron
TTTAACCTTGACAGGGTGAT+TGG 0.356608 6:-35990339 MsG0680032197.01.T01:intron
GGAATTTCAGCCTCAACGTT+TGG 0.360558 6:+35991469 None:intergenic
GCCCCGGTAGCGCAGTAATA+AGG 0.362817 6:+35991103 None:intergenic
TTTCACATCTGTTTGAAGTA+AGG 0.375190 6:+35991261 None:intergenic
GAATTTCAGCCTCAACGTTT+GGG 0.397726 6:+35991470 None:intergenic
AAGCATTATAGTACCTCAAT+TGG 0.404986 6:+35990415 None:intergenic
TACAAGGGTTGTTTATATGC+TGG 0.411794 6:-35991043 MsG0680032197.01.T01:CDS
ACCGGGGCAGATAAGTCATT+TGG 0.424538 6:-35991088 MsG0680032197.01.T01:CDS
AGCTCAGACGGATGCTCAAT+AGG 0.427077 6:+35991875 None:intergenic
ACAGATGTGAAATGGCCATT+AGG 0.428436 6:-35991250 MsG0680032197.01.T01:CDS
TGGCCTGTAGGTGGCTATCC+TGG 0.429297 6:-35991226 MsG0680032197.01.T01:CDS
GGTCCTTATTACTGCGCTAC+CGG 0.429762 6:-35991106 MsG0680032197.01.T01:CDS
GTGATCATATCTGGGCTTCA+AGG 0.435881 6:-35990682 MsG0680032197.01.T01:CDS
TACTTCAAACAGATGTGAAA+TGG 0.440857 6:-35991258 MsG0680032197.01.T01:CDS
GAGGGAAGATGGAGGATTTG+AGG 0.444775 6:-35990193 MsG0680032197.01.T01:CDS
ACAAAGAGCATGAGGGAAGA+TGG 0.452148 6:-35990204 MsG0680032197.01.T01:CDS
CTTTATGTCTCTTATTTGTA+GGG 0.456048 6:+35991512 None:intergenic
GTCCTTATTACTGCGCTACC+GGG 0.457478 6:-35991105 MsG0680032197.01.T01:CDS
TGTCTCTTATTTGTAGGGAT+AGG 0.465641 6:+35991517 None:intergenic
AGGATTTGAGGTAATAAAGC+TGG 0.481943 6:-35990181 MsG0680032197.01.T01:CDS
CTTCCTAAGTGGAACTATGA+TGG 0.483826 6:-35991854 MsG0680032197.01.T01:CDS
AACAATAAGTTTACCTGACC+AGG 0.486009 6:+35990986 None:intergenic
TGGAGAGGTTATGCCTGGTC+AGG 0.490188 6:-35990999 MsG0680032197.01.T01:intron
ACCAGCTTCAATGCCTACAC+TGG 0.503606 6:+35990703 None:intergenic
AGGTGGCTATCCTGGTCCTC+AGG 0.509455 6:-35991218 MsG0680032197.01.T01:intron
CCACCTACAGGCCAACCTAA+TGG 0.511087 6:+35991235 None:intergenic
ATGCTCAATAGGCTTTGATA+TGG 0.511941 6:+35991886 None:intergenic
TATATCTGATGCTCATTACA+AGG 0.514740 6:-35991059 MsG0680032197.01.T01:CDS
TGCCTACACTGGGACCAACT+TGG 0.518241 6:+35990714 None:intergenic
CAGGGTGATTGGAATGGTGC+GGG 0.528656 6:-35990328 MsG0680032197.01.T01:CDS
ACCAATGGAGAGGTTATGCC+TGG 0.535676 6:-35991004 MsG0680032197.01.T01:CDS
GGATCTTTGAAAATTGCTTG+AGG 0.551311 6:+35991688 None:intergenic
TCTAGCACTGGACAAGCCCC+TGG 0.553808 6:-35991830 MsG0680032197.01.T01:CDS
TGAAGCTGGTGATCATATCT+GGG 0.554602 6:-35990690 MsG0680032197.01.T01:CDS
TCCAAATGACTTATCTGCCC+CGG 0.555034 6:+35991087 None:intergenic
ATCACTTCACTATCTTCACC+AGG 0.558839 6:+35991812 None:intergenic
AACTATGATGGATCTAGCAC+TGG 0.560911 6:-35991842 MsG0680032197.01.T01:CDS
GATCCATCATAGTTCCACTT+AGG 0.563451 6:+35991851 None:intergenic
CCTTGATCCAAAACCAATTG+AGG 0.564795 6:-35990428 MsG0680032197.01.T01:intron
GGACCAGGATAGCCACCTAC+AGG 0.573549 6:+35991223 None:intergenic
CCCAGTGTAGGCATTGAAGC+TGG 0.576213 6:-35990704 MsG0680032197.01.T01:CDS
AATGGTATTACCTGAGGACC+AGG 0.584702 6:+35991208 None:intergenic
ATTAACATCAGTGGTACCAA+TGG 0.585033 6:-35991019 MsG0680032197.01.T01:CDS
CCAGCTTCAATGCCTACACT+GGG 0.586497 6:+35990704 None:intergenic
TGGCCATTAGGTTGGCCTGT+AGG 0.586694 6:-35991238 MsG0680032197.01.T01:CDS
ATGTGAAATGGCCATTAGGT+TGG 0.587256 6:-35991246 MsG0680032197.01.T01:CDS
CCATTAGGTTGGCCTGTAGG+TGG 0.591736 6:-35991235 MsG0680032197.01.T01:CDS
ACCAGGCATAACCTCTCCAT+TGG 0.591896 6:+35991003 None:intergenic
ACAGGGTGATTGGAATGGTG+CGG 0.597632 6:-35990329 MsG0680032197.01.T01:intron
CTGCAGTGGGAGTACCAAGT+TGG 0.602734 6:-35990728 MsG0680032197.01.T01:intron
CAGAGAATTACTGAACAAGC+TGG 0.610576 6:-35990463 MsG0680032197.01.T01:CDS
TTCAAAGATCCTTTCCGCGG+TGG 0.612743 6:-35991676 MsG0680032197.01.T01:CDS
ATCCGTCTGAGCTTCCTAAG+TGG 0.613682 6:-35991865 MsG0680032197.01.T01:CDS
TTCCACTTAGGAAGCTCAGA+CGG 0.622261 6:+35991863 None:intergenic
TATGCTGGAATTAACATCAG+TGG 0.626041 6:-35991028 MsG0680032197.01.T01:CDS
CCTTGACAGGGTGATTGGAA+TGG 0.631330 6:-35990334 MsG0680032197.01.T01:intron
CACTTCACTATCTTCACCAG+GGG 0.632006 6:+35991814 None:intergenic
TGCGATGCTTATACGCCACA+AGG 0.635122 6:-35991544 MsG0680032197.01.T01:CDS
CTTCAGTAACCCAAACGTTG+AGG 0.638429 6:-35991479 MsG0680032197.01.T01:CDS
TACCAAGTTGGTCCCAGTGT+AGG 0.643964 6:-35990716 MsG0680032197.01.T01:CDS
GTAGGGATAGGCTCACCTTG+TGG 0.646402 6:+35991529 None:intergenic
GGCTTCAAGGTACATCCTTG+AGG 0.647096 6:-35990669 MsG0680032197.01.T01:intron
ATATCTGATGCTCATTACAA+GGG 0.647840 6:-35991058 MsG0680032197.01.T01:CDS
AAGAGCATGAGGGAAGATGG+AGG 0.657505 6:-35990201 MsG0680032197.01.T01:CDS
TCCTTATTACTGCGCTACCG+GGG 0.658472 6:-35991104 MsG0680032197.01.T01:CDS
TTTCAGTACAAAGAGCATGA+GGG 0.669238 6:-35990211 MsG0680032197.01.T01:intron
CATCAGTGGTACCAATGGAG+AGG 0.669594 6:-35991014 MsG0680032197.01.T01:CDS
ACGTTGAGGCTGAAATTCCG+TGG 0.681288 6:-35991465 MsG0680032197.01.T01:intron
TCACTTCACTATCTTCACCA+GGG 0.684268 6:+35991813 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTAATTTTACTAATTGTTT+TGG - Chr6:35991715-35991734 MsG0680032197.01.T01:intron 10.0%
!! AAAAAAATAGTGAGAAAAAA+CGG + Chr6:35991323-35991342 None:intergenic 15.0%
!!! ATTTGAAATAAAACAAGAAA+TGG + Chr6:35990891-35990910 None:intergenic 15.0%
!!! TGTTTTATTTCAAATTTCAT+AGG - Chr6:35990896-35990915 MsG0680032197.01.T01:intron 15.0%
!! AAAATATTCCTTCATATATC+AGG - Chr6:35990950-35990969 MsG0680032197.01.T01:intron 20.0%
!! AAATATTCCTTCATATATCA+GGG - Chr6:35990951-35990970 MsG0680032197.01.T01:intron 20.0%
!! AATTAGTGAATTTCAAAATG+TGG - Chr6:35990919-35990938 MsG0680032197.01.T01:intron 20.0%
!! ACAAATATGATTCATAACAA+AGG + Chr6:35991807-35991826 None:intergenic 20.0%
!! TTGGTAAAATTAAAAAGGTA+AGG + Chr6:35990652-35990671 None:intergenic 20.0%
!!! AATTTCATTTAACCTACTTT+TGG - Chr6:35991433-35991452 MsG0680032197.01.T01:intron 20.0%
!!! AGTAGTTGGTAAAATTAAAA+AGG + Chr6:35990657-35990676 None:intergenic 20.0%
!!! ATAGAAGATAACTTAACTTT+TGG - Chr6:35990714-35990733 MsG0680032197.01.T01:CDS 20.0%
! AATCAAAGTTAAATCTGCAA+TGG + Chr6:35990352-35990371 None:intergenic 25.0%
! ACATTATCTTAATTCTGTGT+AGG - Chr6:35991535-35991554 MsG0680032197.01.T01:CDS 25.0%
! ATATGTGAAAAACCAAAAGT+AGG + Chr6:35991448-35991467 None:intergenic 25.0%
! TATGTCAAAAAACCTGTAAT+TGG + Chr6:35991784-35991803 None:intergenic 25.0%
! TTCAACTATTTAATACAGAG+AGG - Chr6:35991476-35991495 MsG0680032197.01.T01:CDS 25.0%
!! AGTAACATGAATAGAAGTAT+TGG + Chr6:35990313-35990332 None:intergenic 25.0%
!! CTTTATGTCTCTTATTTGTA+GGG + Chr6:35990569-35990588 None:intergenic 25.0%
!!! TTTTTTATGAATACTGCAGT+GGG - Chr6:35991337-35991356 MsG0680032197.01.T01:intron 25.0%
!!! TTTTTTTATGAATACTGCAG+TGG - Chr6:35991336-35991355 MsG0680032197.01.T01:intron 25.0%
AAGCATTATAGTACCTCAAT+TGG + Chr6:35991666-35991685 None:intergenic 30.0%
ATATCTGATGCTCATTACAA+GGG - Chr6:35991020-35991039 MsG0680032197.01.T01:CDS 30.0%
CAATGCTAGAAAATGAAACT+AGG - Chr6:35990683-35990702 MsG0680032197.01.T01:CDS 30.0%
GGTACACAAATTCTTACTAT+AGG + Chr6:35990292-35990311 None:intergenic 30.0%
GGTTAAATGAAATTACCTCA+AGG + Chr6:35991427-35991446 None:intergenic 30.0%
TACTTCAAACAGATGTGAAA+TGG - Chr6:35990820-35990839 MsG0680032197.01.T01:intron 30.0%
TATATCTGATGCTCATTACA+AGG - Chr6:35991019-35991038 MsG0680032197.01.T01:CDS 30.0%
! ATGTTGATTGTTCAAAGGTA+TGG - Chr6:35990777-35990796 MsG0680032197.01.T01:intron 30.0%
! GCTTTATGTCTCTTATTTGT+AGG + Chr6:35990570-35990589 None:intergenic 30.0%
! GTTGTATGTTGATTGTTCAA+AGG - Chr6:35990772-35990791 MsG0680032197.01.T01:intron 30.0%
! TTTCACATCTGTTTGAAGTA+AGG + Chr6:35990820-35990839 None:intergenic 30.0%
!! CGAATTATTTTGTTTCACGA+AGG - Chr6:35990506-35990525 MsG0680032197.01.T01:intron 30.0%
!! GGTAAAAACATTTTGGTAAG+CGG - Chr6:35990423-35990442 MsG0680032197.01.T01:intron 30.0%
!! TATAGTACCTCAATTGGTTT+TGG + Chr6:35991660-35991679 None:intergenic 30.0%
!!! TTTTGGTTTTAACCTTGACA+GGG - Chr6:35991732-35991751 MsG0680032197.01.T01:intron 30.0%
AACAATAAGTTTACCTGACC+AGG + Chr6:35991095-35991114 None:intergenic 35.0%
ACAAGAAATGGTATTACCTG+AGG + Chr6:35990879-35990898 None:intergenic 35.0%
ATAAGGACCCTGATATATGA+AGG + Chr6:35990961-35990980 None:intergenic 35.0%
ATTAACATCAGTGGTACCAA+TGG - Chr6:35991059-35991078 MsG0680032197.01.T01:CDS 35.0%
TACAAGGGTTGTTTATATGC+TGG - Chr6:35991035-35991054 MsG0680032197.01.T01:CDS 35.0%
TATGCTGGAATTAACATCAG+TGG - Chr6:35991050-35991069 MsG0680032197.01.T01:CDS 35.0%
TTGTTCAGTAATTCTCTGTC+AGG + Chr6:35991613-35991632 None:intergenic 35.0%
! AAGGAGTACAATACATACCA+CGG + Chr6:35990633-35990652 None:intergenic 35.0%
! AGGATTTGAGGTAATAAAGC+TGG - Chr6:35991897-35991916 MsG0680032197.01.T01:CDS 35.0%
! ATGCTCAATAGGCTTTGATA+TGG + Chr6:35990195-35990214 None:intergenic 35.0%
! ATTTTCAAAGATCCTTTCCG+CGG - Chr6:35990399-35990418 MsG0680032197.01.T01:intron 35.0%
! CTTAATTCTGTGTAGGCTTT+TGG - Chr6:35991542-35991561 MsG0680032197.01.T01:CDS 35.0%
! GGATCTTTGAAAATTGCTTG+AGG + Chr6:35990393-35990412 None:intergenic 35.0%
! TAGCATTGAACAACAGTAGT+TGG + Chr6:35990671-35990690 None:intergenic 35.0%
! TGTCTCTTATTTGTAGGGAT+AGG + Chr6:35990564-35990583 None:intergenic 35.0%
! TTTCAGTACAAAGAGCATGA+GGG - Chr6:35991867-35991886 MsG0680032197.01.T01:CDS 35.0%
!! TTTTCAGTACAAAGAGCATG+AGG - Chr6:35991866-35991885 MsG0680032197.01.T01:CDS 35.0%
!!! CTCAATTGGTTTTGGATCAA+GGG + Chr6:35991652-35991671 None:intergenic 35.0%
!!! GTTTTGGTTTTAACCTTGAC+AGG - Chr6:35991731-35991750 MsG0680032197.01.T01:intron 35.0%
ACAGATGTGAAATGGCCATT+AGG - Chr6:35990828-35990847 MsG0680032197.01.T01:intron 40.0%
ACTCCTTCATTGTGAAGAGT+CGG - Chr6:35991271-35991290 MsG0680032197.01.T01:CDS 40.0%
ATCACTTCACTATCTTCACC+AGG + Chr6:35990269-35990288 None:intergenic 40.0%
ATGTGAAATGGCCATTAGGT+TGG - Chr6:35990832-35990851 MsG0680032197.01.T01:intron 40.0%
CAGAGAATTACTGAACAAGC+TGG - Chr6:35991615-35991634 MsG0680032197.01.T01:intron 40.0%
CCTTGATCCAAAACCAATTG+AGG - Chr6:35991650-35991669 MsG0680032197.01.T01:intron 40.0%
CTTCCTAAGTGGAACTATGA+TGG - Chr6:35990224-35990243 MsG0680032197.01.T01:intron 40.0%
GAATTTCAGCCTCAACGTTT+GGG + Chr6:35990611-35990630 None:intergenic 40.0%
GATCCATCATAGTTCCACTT+AGG + Chr6:35990230-35990249 None:intergenic 40.0%
TCACTTCACTATCTTCACCA+GGG + Chr6:35990268-35990287 None:intergenic 40.0%
TGAAAATTGCTTGAGGACTG+AGG + Chr6:35990386-35990405 None:intergenic 40.0%
TGAAGCTGGTGATCATATCT+GGG - Chr6:35991388-35991407 MsG0680032197.01.T01:intron 40.0%
TTGAAGCTGGTGATCATATC+TGG - Chr6:35991387-35991406 MsG0680032197.01.T01:intron 40.0%
TTTAACCTTGACAGGGTGAT+TGG - Chr6:35991739-35991758 MsG0680032197.01.T01:intron 40.0%
!! AACTATGATGGATCTAGCAC+TGG - Chr6:35990236-35990255 MsG0680032197.01.T01:intron 40.0%
!! CCAAAATGTTTTTACCACCG+CGG + Chr6:35990419-35990438 None:intergenic 40.0%
!!! CCTCAATTGGTTTTGGATCA+AGG + Chr6:35991653-35991672 None:intergenic 40.0%
AAATTGCTTGAGGACTGAGG+AGG + Chr6:35990383-35990402 None:intergenic 45.0%
AATGGTATTACCTGAGGACC+AGG + Chr6:35990873-35990892 None:intergenic 45.0%
CACTTCACTATCTTCACCAG+GGG + Chr6:35990267-35990286 None:intergenic 45.0%
CTTCAGTAACCCAAACGTTG+AGG - Chr6:35990599-35990618 MsG0680032197.01.T01:intron 45.0%
GCTGACATAGACGCAAACAT+TGG - Chr6:35991148-35991167 MsG0680032197.01.T01:intron 45.0%
GGAATTTCAGCCTCAACGTT+TGG + Chr6:35990612-35990631 None:intergenic 45.0%
GTGATCATATCTGGGCTTCA+AGG - Chr6:35991396-35991415 MsG0680032197.01.T01:intron 45.0%
TCCAAATGACTTATCTGCCC+CGG + Chr6:35990994-35991013 None:intergenic 45.0%
TTCCACTTAGGAAGCTCAGA+CGG + Chr6:35990218-35990237 None:intergenic 45.0%
! ACAAAGAGCATGAGGGAAGA+TGG - Chr6:35991874-35991893 MsG0680032197.01.T01:CDS 45.0%
! CCGCGGTGGTAAAAACATTT+TGG - Chr6:35990416-35990435 MsG0680032197.01.T01:intron 45.0%
! TGTTGCCATCGTGTCATTGT+CGG - Chr6:35991222-35991241 MsG0680032197.01.T01:CDS 45.0%
!! ATGTTTTTACCACCGCGGAA+AGG + Chr6:35990414-35990433 None:intergenic 45.0%
!! GTGAAGAGTCGGTGCTATAT+AGG - Chr6:35991282-35991301 MsG0680032197.01.T01:CDS 45.0%
AATGCCCGACAATGACACGA+TGG + Chr6:35991230-35991249 None:intergenic 50.0%
ACAGGGTGATTGGAATGGTG+CGG - Chr6:35991749-35991768 MsG0680032197.01.T01:intron 50.0%
ACCAATGGAGAGGTTATGCC+TGG - Chr6:35991074-35991093 MsG0680032197.01.T01:CDS 50.0%
ACCAGCTTCAATGCCTACAC+TGG + Chr6:35991378-35991397 None:intergenic 50.0%
ACCAGGCATAACCTCTCCAT+TGG + Chr6:35991078-35991097 None:intergenic 50.0%
ACCGGGGCAGATAAGTCATT+TGG - Chr6:35990990-35991009 MsG0680032197.01.T01:intron 50.0%
ACGTTGAGGCTGAAATTCCG+TGG - Chr6:35990613-35990632 MsG0680032197.01.T01:intron 50.0%
AGCTCAGACGGATGCTCAAT+AGG + Chr6:35990206-35990225 None:intergenic 50.0%
ATCCGTCTGAGCTTCCTAAG+TGG - Chr6:35990213-35990232 MsG0680032197.01.T01:intron 50.0%
CATCAGTGGTACCAATGGAG+AGG - Chr6:35991064-35991083 MsG0680032197.01.T01:CDS 50.0%
CCAGCTTCAATGCCTACACT+GGG + Chr6:35991377-35991396 None:intergenic 50.0%
CCATTCCAATCACCCTGTCA+AGG + Chr6:35991747-35991766 None:intergenic 50.0%
CCTTGACAGGGTGATTGGAA+TGG - Chr6:35991744-35991763 MsG0680032197.01.T01:intron 50.0%
CGGGATGTCACACCAATTAC+AGG - Chr6:35991769-35991788 MsG0680032197.01.T01:intron 50.0%
GAGGGAAGATGGAGGATTTG+AGG - Chr6:35991885-35991904 MsG0680032197.01.T01:CDS 50.0%
GGCTTCAAGGTACATCCTTG+AGG - Chr6:35991409-35991428 MsG0680032197.01.T01:intron 50.0%
GGTCCTTATTACTGCGCTAC+CGG - Chr6:35990972-35990991 MsG0680032197.01.T01:intron 50.0%
GTCCTTATTACTGCGCTACC+GGG - Chr6:35990973-35990992 MsG0680032197.01.T01:intron 50.0%
TCCTTATTACTGCGCTACCG+GGG - Chr6:35990974-35990993 MsG0680032197.01.T01:intron 50.0%
TGCGATGCTTATACGCCACA+AGG - Chr6:35990534-35990553 MsG0680032197.01.T01:intron 50.0%
TTCAAAGATCCTTTCCGCGG+TGG - Chr6:35990402-35990421 MsG0680032197.01.T01:intron 50.0%
! AAGAGCATGAGGGAAGATGG+AGG - Chr6:35991877-35991896 MsG0680032197.01.T01:CDS 50.0%
! GTTGCCATCGTGTCATTGTC+GGG - Chr6:35991223-35991242 MsG0680032197.01.T01:CDS 50.0%
!! GCACCGACTCTTCACAATGA+AGG + Chr6:35991277-35991296 None:intergenic 50.0%
!! TACCAAGTTGGTCCCAGTGT+AGG - Chr6:35991362-35991381 MsG0680032197.01.T01:intron 50.0%
CAGGGTGATTGGAATGGTGC+GGG - Chr6:35991750-35991769 MsG0680032197.01.T01:intron 55.0%
CCACCTACAGGCCAACCTAA+TGG + Chr6:35990846-35990865 None:intergenic 55.0%
GTAGGGATAGGCTCACCTTG+TGG + Chr6:35990552-35990571 None:intergenic 55.0%
TGCCTACACTGGGACCAACT+TGG + Chr6:35991367-35991386 None:intergenic 55.0%
TGGAGAGGTTATGCCTGGTC+AGG - Chr6:35991079-35991098 MsG0680032197.01.T01:CDS 55.0%
!! CCATTAGGTTGGCCTGTAGG+TGG - Chr6:35990843-35990862 MsG0680032197.01.T01:intron 55.0%
!! CCCAGTGTAGGCATTGAAGC+TGG - Chr6:35991374-35991393 MsG0680032197.01.T01:intron 55.0%
!! CTGCAGTGGGAGTACCAAGT+TGG - Chr6:35991350-35991369 MsG0680032197.01.T01:intron 55.0%
!! TGGCCATTAGGTTGGCCTGT+AGG - Chr6:35990840-35990859 MsG0680032197.01.T01:intron 55.0%
AGGTGGCTATCCTGGTCCTC+AGG - Chr6:35990860-35990879 MsG0680032197.01.T01:intron 60.0%
GCCCCGGTAGCGCAGTAATA+AGG + Chr6:35990978-35990997 None:intergenic 60.0%
GGACCAGGATAGCCACCTAC+AGG + Chr6:35990858-35990877 None:intergenic 60.0%
TGGCCTGTAGGTGGCTATCC+TGG - Chr6:35990852-35990871 MsG0680032197.01.T01:intron 60.0%
! TCTAGCACTGGACAAGCCCC+TGG - Chr6:35990248-35990267 MsG0680032197.01.T01:intron 60.0%
Chromosome Type Strat End Strand Name
Chr6 gene 35990170 35991930 35990170 ID=MsG0680032197.01;Name=MsG0680032197.01
Chr6 mRNA 35990170 35991930 35990170 ID=MsG0680032197.01.T01;Parent=MsG0680032197.01;Name=MsG0680032197.01.T01;_AED=0.44;_eAED=0.46;_QI=0|0|0|1|1|1|9|0|240
Chr6 exon 35991806 35991930 35991806 ID=MsG0680032197.01.T01:exon:19631;Parent=MsG0680032197.01.T01
Chr6 exon 35991663 35991711 35991663 ID=MsG0680032197.01.T01:exon:19630;Parent=MsG0680032197.01.T01
Chr6 exon 35991466 35991572 35991466 ID=MsG0680032197.01.T01:exon:19629;Parent=MsG0680032197.01.T01
Chr6 exon 35991219 35991306 35991219 ID=MsG0680032197.01.T01:exon:19628;Parent=MsG0680032197.01.T01
Chr6 exon 35991000 35991128 35991000 ID=MsG0680032197.01.T01:exon:19627;Parent=MsG0680032197.01.T01
Chr6 exon 35990670 35990744 35990670 ID=MsG0680032197.01.T01:exon:19626;Parent=MsG0680032197.01.T01
Chr6 exon 35990429 35990482 35990429 ID=MsG0680032197.01.T01:exon:19625;Parent=MsG0680032197.01.T01
Chr6 exon 35990310 35990347 35990310 ID=MsG0680032197.01.T01:exon:19624;Parent=MsG0680032197.01.T01
Chr6 exon 35990170 35990227 35990170 ID=MsG0680032197.01.T01:exon:19623;Parent=MsG0680032197.01.T01
Chr6 CDS 35991806 35991930 35991806 ID=MsG0680032197.01.T01:cds;Parent=MsG0680032197.01.T01
Chr6 CDS 35991663 35991711 35991663 ID=MsG0680032197.01.T01:cds;Parent=MsG0680032197.01.T01
Chr6 CDS 35991466 35991572 35991466 ID=MsG0680032197.01.T01:cds;Parent=MsG0680032197.01.T01
Chr6 CDS 35991219 35991306 35991219 ID=MsG0680032197.01.T01:cds;Parent=MsG0680032197.01.T01
Chr6 CDS 35991000 35991128 35991000 ID=MsG0680032197.01.T01:cds;Parent=MsG0680032197.01.T01
Chr6 CDS 35990670 35990744 35990670 ID=MsG0680032197.01.T01:cds;Parent=MsG0680032197.01.T01
Chr6 CDS 35990429 35990482 35990429 ID=MsG0680032197.01.T01:cds;Parent=MsG0680032197.01.T01
Chr6 CDS 35990310 35990347 35990310 ID=MsG0680032197.01.T01:cds;Parent=MsG0680032197.01.T01
Chr6 CDS 35990170 35990227 35990170 ID=MsG0680032197.01.T01:cds;Parent=MsG0680032197.01.T01
Gene Sequence

>MsG0680032197.01.T01

ATGAATGTATTTTATTCTCAGACCATATCAAAGCCTATTGAGCATCCGTCTGAGCTTCCTAAGTGGAACTATGATGGATCTAGCACTGGACAAGCCCCTGGTGAAGATAGTGAAGTGATCCTATATCCTCAAGCAATTTTCAAAGATCCTTTCCGCGGTGGTAAAAACATTTTGGTCATTTGCGATGCTTATACGCCACAAGGTGAGCCTATCCCTACAAATAAGAGACATAAAGCTGCTGAAATCTTCAGTAACCCAAACGTTGAGGCTGAAATTCCGTGGTATGGAATCGAACAAGAGTACACCTTACTTCAAACAGATGTGAAATGGCCATTAGGTTGGCCTGTAGGTGGCTATCCTGGTCCTCAGGGTCCTTATTACTGCGCTACCGGGGCAGATAAGTCATTTGGACATGATATATCTGATGCTCATTACAAGGGTTGTTTATATGCTGGAATTAACATCAGTGGTACCAATGGAGAGGTTATGCCTGGTCAGTGGGAGTACCAAGTTGGTCCCAGTGTAGGCATTGAAGCTGGTGATCATATCTGGGCTTCAAGGTACATCCTTGAGAGAATTACTGAACAAGCTGGTGTTGTGCTCACCCTTGATCCAAAACCAATTGAGGGTGATTGGAATGGTGCGGGATGTCACACCAATTACAGTACAAAGAGCATGAGGGAAGATGGAGGATTTGAGGTAATAAAGCTGGAATGTCGATGA

Protein sequence

>MsG0680032197.01.T01

MNVFYSQTISKPIEHPSELPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRGGKNILVICDAYTPQGEPIPTNKRHKAAEIFSNPNVEAEIPWYGIEQEYTLLQTDVKWPLGWPVGGYPGPQGPYYCATGADKSFGHDISDAHYKGCLYAGINISGTNGEVMPGQWEYQVGPSVGIEAGDHIWASRYILERITEQAGVVLTLDPKPIEGDWNGAGCHTNYSTKSMREDGGFEVIKLECR*