Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280011459.01.T01 | XP_013465593.1 | 55.418 | 323 | 40 | 4 | 15 | 268 | 6 | 293 | 6.16E-96 | 295 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280011459.01.T01 | Q9SAI4 | 49.363 | 314 | 52 | 6 | 15 | 256 | 3 | 281 | 1.75E-76 | 238 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280011459.01.T01 | Q6J1S8 | 55.418 | 323 | 40 | 4 | 15 | 268 | 6 | 293 | 2.94e-96 | 295 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0180002463.01 | MsG0280011459.01 | 0.807880 | 4.071421e-50 | 2.293899e-47 |
| MsG0180003350.01 | MsG0280011459.01 | 0.851883 | 6.640527e-61 | 1.363109e-57 |
| MsG0180004773.01 | MsG0280011459.01 | 0.807090 | 5.989303e-50 | 3.305820e-47 |
| MsG0280011066.01 | MsG0280011459.01 | 0.823614 | 1.259616e-53 | 1.090006e-50 |
| MsG0280011459.01 | MsG0280011463.01 | 0.946665 | 2.993308e-105 | 4.975386e-100 |
| MsG0280011459.01 | MsG0380015183.01 | 0.817143 | 3.841709e-52 | 2.775209e-49 |
| MsG0280011459.01 | MsG0380015636.01 | 0.802107 | 6.564435e-49 | 3.188485e-46 |
| MsG0280011459.01 | MsG0380016955.01 | 0.814500 | 1.493019e-51 | 1.003533e-48 |
| MsG0280011459.01 | MsG0480018161.01 | 0.820662 | 6.092576e-53 | 4.850433e-50 |
| MsG0280011459.01 | MsG0480020838.01 | 0.812624 | 3.860022e-51 | 2.466336e-48 |
| MsG0280011459.01 | MsG0480021563.01 | 0.850673 | 1.458862e-60 | 2.879651e-57 |
| MsG0280011459.01 | MsG0480022150.01 | 0.854835 | 9.445780e-62 | 2.137529e-58 |
| MsG0280011459.01 | MsG0480022935.01 | 0.835982 | 1.221757e-56 | 1.518669e-53 |
| MsG0280011459.01 | MsG0480023300.01 | 0.804898 | 1.732056e-49 | 9.038104e-47 |
| MsG0280011459.01 | MsG0480023577.01 | 0.806528 | 7.875604e-50 | 4.284424e-47 |
| MsG0280011459.01 | MsG0580024673.01 | 0.808558 | 2.919947e-50 | 1.674772e-47 |
| MsG0280011459.01 | MsG0580028483.01 | 0.818830 | 1.597469e-52 | 1.208768e-49 |
| MsG0280011459.01 | MsG0780038030.01 | 0.817388 | 3.383766e-52 | 2.460970e-49 |
| MsG0280011459.01 | MsG0780038108.01 | 0.816932 | 4.285516e-52 | 3.078105e-49 |
| MsG0280011459.01 | MsG0780038263.01 | 0.838449 | 2.857652e-57 | 3.828884e-54 |
| MsG0280011459.01 | MsG0780039511.01 | 0.819630 | 1.049884e-52 | 8.122262e-50 |
| MsG0280011459.01 | MsG0780039811.01 | 0.867791 | 1.054753e-65 | 3.728498e-62 |
| MsG0280011459.01 | MsG0780040622.01 | 0.813745 | 2.190674e-51 | 1.442513e-48 |
| MsG0280011459.01 | MsG0880044333.01 | 0.821078 | 4.888646e-53 | 3.937846e-50 |
| MsG0280011459.01 | MsG0880045170.01 | 0.805080 | 1.586313e-49 | 8.315661e-47 |
| MsG0280011459.01 | MsG0880047738.01 | 0.811370 | 7.243496e-51 | 4.475620e-48 |
| MsG0280007600.01 | MsG0280011459.01 | 0.813432 | 2.566859e-51 | 1.676041e-48 |
| MsG0280010047.01 | MsG0280011459.01 | -0.809193 | 2.135366e-50 | 1.245601e-47 |
| MsG0280010055.01 | MsG0280011459.01 | -0.823037 | 1.717979e-53 | 1.462698e-50 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280011459.01.T01 | MTR_2g104940 | 55.418 | 323 | 40 | 4 | 15 | 268 | 6 | 293 | 7.47e-100 | 295 |
| MsG0280011459.01.T01 | MTR_4g006730 | 51.402 | 321 | 54 | 5 | 15 | 268 | 3 | 288 | 1.03e-86 | 262 |
| MsG0280011459.01.T01 | MTR_4g006730 | 57.203 | 236 | 44 | 3 | 55 | 268 | 1 | 201 | 8.42e-74 | 226 |
| MsG0280011459.01.T01 | MTR_4g006630 | 59.821 | 224 | 33 | 3 | 55 | 256 | 1 | 189 | 1.00e-73 | 226 |
| MsG0280011459.01.T01 | MTR_4g006730 | 50.951 | 263 | 50 | 5 | 15 | 210 | 3 | 253 | 2.15e-66 | 208 |
| MsG0280011459.01.T01 | MTR_1g097840 | 40.803 | 299 | 81 | 4 | 20 | 257 | 13 | 276 | 5.00e-55 | 181 |
| MsG0280011459.01.T01 | MTR_4g006650 | 69.355 | 124 | 25 | 3 | 51 | 161 | 13 | 136 | 2.23e-43 | 151 |
| MsG0280011459.01.T01 | MTR_1g097840 | 42.466 | 219 | 65 | 3 | 20 | 177 | 13 | 231 | 1.77e-39 | 139 |
| MsG0280011459.01.T01 | MTR_8g087710 | 36.328 | 256 | 98 | 6 | 51 | 278 | 48 | 266 | 1.22e-38 | 137 |
| MsG0280011459.01.T01 | MTR_8g087720 | 35.897 | 234 | 92 | 3 | 46 | 256 | 42 | 240 | 7.80e-38 | 135 |
| MsG0280011459.01.T01 | MTR_2g017590 | 36.015 | 261 | 95 | 4 | 46 | 269 | 40 | 265 | 4.26e-37 | 133 |
| MsG0280011459.01.T01 | MTR_2g017620 | 37.500 | 232 | 87 | 3 | 46 | 254 | 28 | 224 | 1.83e-36 | 131 |
| MsG0280011459.01.T01 | MTR_2g017620 | 37.500 | 232 | 87 | 3 | 46 | 254 | 42 | 238 | 2.10e-36 | 131 |
| MsG0280011459.01.T01 | MTR_2g017660 | 34.340 | 265 | 113 | 4 | 46 | 284 | 43 | 272 | 3.62e-35 | 128 |
| MsG0280011459.01.T01 | MTR_2g017610 | 36.325 | 234 | 91 | 4 | 46 | 256 | 42 | 240 | 2.03e-33 | 124 |
| MsG0280011459.01.T01 | MTR_2g017570 | 36.325 | 234 | 91 | 4 | 46 | 256 | 42 | 240 | 2.37e-33 | 123 |
| MsG0280011459.01.T01 | MTR_2g017620 | 47.244 | 127 | 32 | 1 | 128 | 254 | 66 | 157 | 2.16e-29 | 110 |
| MsG0280011459.01.T01 | MTR_7g010650 | 32.189 | 233 | 101 | 4 | 46 | 256 | 41 | 238 | 7.29e-29 | 111 |
| MsG0280011459.01.T01 | MTR_4g084880 | 33.051 | 236 | 98 | 5 | 46 | 256 | 39 | 239 | 8.43e-29 | 111 |
| MsG0280011459.01.T01 | MTR_5g079570 | 33.333 | 234 | 97 | 5 | 46 | 256 | 44 | 241 | 3.36e-28 | 109 |
| MsG0280011459.01.T01 | MTR_5g063930 | 31.739 | 230 | 94 | 5 | 51 | 254 | 46 | 238 | 2.73e-25 | 102 |
| MsG0280011459.01.T01 | MTR_8g087720 | 38.710 | 155 | 72 | 2 | 46 | 177 | 42 | 196 | 3.93e-24 | 97.4 |
| MsG0280011459.01.T01 | MTR_8g087720 | 34.286 | 140 | 69 | 2 | 46 | 162 | 42 | 181 | 6.02e-15 | 72.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280011459.01.T01 | AT1G80760 | 49.363 | 314 | 52 | 6 | 15 | 256 | 3 | 281 | 1.78e-77 | 238 |
| MsG0280011459.01.T01 | AT4G10380 | 51.082 | 231 | 56 | 3 | 51 | 259 | 87 | 282 | 2.75e-60 | 194 |
| MsG0280011459.01.T01 | AT4G19030 | 34.746 | 236 | 89 | 4 | 51 | 256 | 64 | 264 | 2.01e-32 | 122 |
| MsG0280011459.01.T01 | AT4G18910 | 33.469 | 245 | 90 | 4 | 46 | 256 | 56 | 261 | 4.04e-32 | 120 |
| MsG0280011459.01.T01 | AT5G37820 | 34.177 | 237 | 82 | 4 | 51 | 256 | 88 | 281 | 3.47e-29 | 113 |
| MsG0280011459.01.T01 | AT5G37820 | 34.177 | 237 | 82 | 4 | 51 | 256 | 52 | 245 | 4.22e-29 | 112 |
| MsG0280011459.01.T01 | AT5G37810 | 34.061 | 229 | 93 | 3 | 51 | 256 | 52 | 245 | 5.64e-29 | 112 |
| MsG0280011459.01.T01 | AT1G31885 | 33.475 | 236 | 92 | 5 | 51 | 256 | 52 | 252 | 1.26e-28 | 112 |
| MsG0280011459.01.T01 | AT1G31885 | 33.476 | 233 | 90 | 5 | 54 | 256 | 1 | 198 | 3.99e-28 | 109 |
| MsG0280011459.01.T01 | AT4G18910 | 37.126 | 167 | 67 | 3 | 46 | 178 | 56 | 218 | 8.60e-22 | 91.7 |
| MsG0280011459.01.T01 | AT4G19030 | 36.709 | 158 | 70 | 3 | 51 | 178 | 64 | 221 | 5.91e-21 | 89.4 |
| MsG0280011459.01.T01 | AT3G16240 | 25.322 | 233 | 109 | 7 | 50 | 252 | 27 | 224 | 1.94e-11 | 63.5 |
Find 85 sgRNAs with CRISPR-Local
Find 144 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCATTGACGCTCCTGTTAT+TGG | 0.213047 | 2:+84287689 | None:intergenic |
| GTGACTCCACCACTCATAAA+AGG | 0.246044 | 2:+84288180 | None:intergenic |
| GTTCCATTTCTACAGTAAAT+AGG | 0.282926 | 2:+84289029 | None:intergenic |
| TCTCCGAGCCTTGTGTCTTT+TGG | 0.294166 | 2:+84288562 | None:intergenic |
| CTTTGCATTATCATCTTCTT+CGG | 0.298809 | 2:+84287545 | None:intergenic |
| CCAGGAGTGCCTGGTGTTGC+TGG | 0.322227 | 2:+84288978 | None:intergenic |
| CCTGGTGTTGCTGGTGTTGA+TGG | 0.322832 | 2:+84288987 | None:intergenic |
| TCACCTATTTACTGTAGAAA+TGG | 0.332250 | 2:-84289032 | MsG0280011459.01.T01:CDS |
| CAGATAGGAGCCGAGTTTAT+AGG | 0.335209 | 2:-84288629 | MsG0280011459.01.T01:CDS |
| GTATATTGGTGCACAAGTTT+TGG | 0.339591 | 2:-84288243 | MsG0280011459.01.T01:CDS |
| GAGAGTGATAAGTGAGAGTT+AGG | 0.356698 | 2:+84287785 | None:intergenic |
| ATGATGGTGCACTGCGTTGC+AGG | 0.367512 | 2:-84287712 | MsG0280011459.01.T01:CDS |
| GCTGGACCTAGAGTTCTTAC+TGG | 0.377381 | 2:+84287665 | None:intergenic |
| CTGCGTTGCAGGCCAATAAC+AGG | 0.388557 | 2:-84287701 | MsG0280011459.01.T01:CDS |
| CTCTCCACCGGCCACATCTC+TGG | 0.392505 | 2:-84288489 | MsG0280011459.01.T01:intron |
| ACCGTTCCTTCCGGAGGATA+TGG | 0.393092 | 2:-84288159 | MsG0280011459.01.T01:CDS |
| TAGTTATTTGCAGCTATAGC+TGG | 0.401428 | 2:+84287647 | None:intergenic |
| ATTGGGTGTGCTACCTCTAC+TGG | 0.401500 | 2:-84288534 | MsG0280011459.01.T01:CDS |
| CAAATAACTACAAAGCCATA+TGG | 0.404031 | 2:-84287634 | MsG0280011459.01.T01:CDS |
| ACATTGATTCTGATGTTTGC+TGG | 0.410657 | 2:-84288606 | MsG0280011459.01.T01:CDS |
| CAAGGCTCGGAGACTCTGAT+TGG | 0.413496 | 2:-84288552 | MsG0280011459.01.T01:CDS |
| TTTGCATTATCATCTTCTTC+GGG | 0.414167 | 2:+84287546 | None:intergenic |
| GGTGGAGTCACCGTTCCTTC+CGG | 0.437337 | 2:-84288168 | MsG0280011459.01.T01:CDS |
| ATGTTCATGACAAGGGGATA+GGG | 0.448149 | 2:+84287739 | None:intergenic |
| TATCTCTTAGCTCCAATACT+TGG | 0.455159 | 2:-84287608 | MsG0280011459.01.T01:CDS |
| TTGCAGGTGCCTATGTATAT+TGG | 0.461576 | 2:-84288257 | MsG0280011459.01.T01:intron |
| CATTGATTCTGATGTTTGCT+GGG | 0.466528 | 2:-84288605 | MsG0280011459.01.T01:CDS |
| TATGTTCATGACAAGGGGAT+AGG | 0.468887 | 2:+84287738 | None:intergenic |
| TGATGCTCAATACTAATAGC+AGG | 0.471043 | 2:-84287820 | MsG0280011459.01.T01:CDS |
| CCACCTAGAGCTCCAAGTAT+TGG | 0.477195 | 2:+84287596 | None:intergenic |
| AAGTTGATCATCTCTAAAGC+TGG | 0.479754 | 2:+84287500 | None:intergenic |
| AGAGGTACACCAGGAGTGCC+TGG | 0.482854 | 2:+84288969 | None:intergenic |
| GTGCTGCATTTGCTCTCAAA+GGG | 0.486830 | 2:-84288211 | MsG0280011459.01.T01:CDS |
| AAATAACTACAAAGCCATAT+GGG | 0.491686 | 2:-84287633 | MsG0280011459.01.T01:CDS |
| CCAGCAACACCAGGCACTCC+TGG | 0.515961 | 2:-84288978 | MsG0280011459.01.T01:CDS |
| AGTTGATCATCTCTAAAGCT+GGG | 0.516650 | 2:+84287501 | None:intergenic |
| ACTTGGAGCTCTAGGTGGGC+AGG | 0.519171 | 2:-84287591 | MsG0280011459.01.T01:CDS |
| ATGAACCCAGTAAGAACTCT+AGG | 0.522426 | 2:-84287671 | MsG0280011459.01.T01:CDS |
| TGTGCTGCATTTGCTCTCAA+AGG | 0.524754 | 2:-84288212 | MsG0280011459.01.T01:CDS |
| TAATCTAATGTTCGTTGTCA+CGG | 0.524885 | 2:-84288103 | MsG0280011459.01.T01:CDS |
| GCTCCAATACTTGGAGCTCT+AGG | 0.532633 | 2:-84287599 | MsG0280011459.01.T01:CDS |
| TGACTCCACCACTCATAAAA+GGG | 0.537986 | 2:+84288181 | None:intergenic |
| TTATGATGATTGATGAGCAT+GGG | 0.550009 | 2:+84287469 | None:intergenic |
| TGTTCATGACAAGGGGATAG+GGG | 0.551358 | 2:+84287740 | None:intergenic |
| AAGGCTCGGAGACTCTGATT+GGG | 0.552417 | 2:-84288551 | MsG0280011459.01.T01:CDS |
| TTTATGATGATTGATGAGCA+TGG | 0.552805 | 2:+84287468 | None:intergenic |
| GGTTTAAGTCTGAGAGAAGC+GGG | 0.553612 | 2:-84288938 | MsG0280011459.01.T01:CDS |
| AATGTTCGTTGTCACGGCAG+TGG | 0.554743 | 2:-84288097 | MsG0280011459.01.T01:CDS |
| AAGTCTGAGAGAAGCGGGAA+TGG | 0.555069 | 2:-84288933 | MsG0280011459.01.T01:intron |
| CAGAGATGTGGCCGGTGGAG+AGG | 0.557528 | 2:+84288490 | None:intergenic |
| CTGGACCTAGAGTTCTTACT+GGG | 0.557635 | 2:+84287666 | None:intergenic |
| TGCTACCTCTACTGGTCTTG+CGG | 0.560160 | 2:-84288526 | MsG0280011459.01.T01:CDS |
| CATATATATGTTCATGACAA+GGG | 0.568156 | 2:+84287732 | None:intergenic |
| GAACTAGCAGGAATTGCAGT+GGG | 0.569469 | 2:-84287851 | MsG0280011459.01.T01:CDS |
| ACCATATCCTCCGGAAGGAA+CGG | 0.576185 | 2:+84288158 | None:intergenic |
| AGCTAAGAGATAGACCCATA+TGG | 0.576739 | 2:+84287619 | None:intergenic |
| CCATCAACACCAGCAACACC+AGG | 0.577155 | 2:-84288987 | MsG0280011459.01.T01:CDS |
| AAATGGAACATATTATAATG+AGG | 0.577697 | 2:-84289015 | MsG0280011459.01.T01:CDS |
| CCAATACTTGGAGCTCTAGG+TGG | 0.585362 | 2:-84287596 | MsG0280011459.01.T01:CDS |
| CATAACCGCAAGACCAGTAG+AGG | 0.586587 | 2:+84288521 | None:intergenic |
| ATGATCATCATCCTCTCCAC+CGG | 0.588983 | 2:-84288501 | MsG0280011459.01.T01:CDS |
| GTTCATGACAAGGGGATAGG+GGG | 0.591140 | 2:+84287741 | None:intergenic |
| GAATCAATGTCCTATAAACT+CGG | 0.592738 | 2:+84288619 | None:intergenic |
| TGTCATGAACATATATATGA+TGG | 0.598290 | 2:-84287728 | MsG0280011459.01.T01:CDS |
| AAAAGCTTGACCATATCCTC+CGG | 0.599263 | 2:+84288149 | None:intergenic |
| ACTTGTGCACCAATATACAT+AGG | 0.600697 | 2:+84288248 | None:intergenic |
| TCATATATATGTTCATGACA+AGG | 0.608998 | 2:+84287731 | None:intergenic |
| AGCACCAGAGATGTGGCCGG+TGG | 0.615438 | 2:+84288485 | None:intergenic |
| TGAGATGAGCACCAGAGATG+TGG | 0.617163 | 2:+84288478 | None:intergenic |
| CAATACTTGGAGCTCTAGGT+GGG | 0.620062 | 2:-84287595 | MsG0280011459.01.T01:CDS |
| GGAGTCACCGTTCCTTCCGG+AGG | 0.622617 | 2:-84288165 | MsG0280011459.01.T01:CDS |
| ATATATATGTTCATGACAAG+GGG | 0.623728 | 2:+84287733 | None:intergenic |
| ACTCACAGCTCTTGTGTCGG+TGG | 0.623869 | 2:+84288074 | None:intergenic |
| GGGTTTAAGTCTGAGAGAAG+CGG | 0.625558 | 2:-84288939 | MsG0280011459.01.T01:CDS |
| ATGTAGGTAGGAGAACTAGC+AGG | 0.625936 | 2:-84287863 | MsG0280011459.01.T01:intron |
| AGAACTAGCAGGAATTGCAG+TGG | 0.628860 | 2:-84287852 | MsG0280011459.01.T01:CDS |
| GAACCAAAAGACACAAGGCT+CGG | 0.650309 | 2:-84288565 | MsG0280011459.01.T01:CDS |
| GCTTGACCATATCCTCCGGA+AGG | 0.651188 | 2:+84288153 | None:intergenic |
| TATGATGATTGATGAGCATG+GGG | 0.652693 | 2:+84287470 | None:intergenic |
| GATGCTCAATACTAATAGCA+GGG | 0.658731 | 2:-84287819 | MsG0280011459.01.T01:CDS |
| AATACTCACAGCTCTTGTGT+CGG | 0.671145 | 2:+84288071 | None:intergenic |
| GTTGATCATCTCTAAAGCTG+GGG | 0.675313 | 2:+84287502 | None:intergenic |
| ATGAGCACCAGAGATGTGGC+CGG | 0.675762 | 2:+84288482 | None:intergenic |
| ATTGTGAACCAAAAGACACA+AGG | 0.703696 | 2:-84288570 | MsG0280011459.01.T01:CDS |
| ATGATGATTGATGAGCATGG+GGG | 0.825649 | 2:+84287471 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAGTATAAATTATAATTGC+AGG | - | Chr2:84288237-84288256 | MsG0280011459.01.T01:CDS | 15.0% |
| !! | TAATTTCAACAACTTTAATT+AGG | + | Chr2:84288148-84288167 | None:intergenic | 15.0% |
| !! | AAATGGAACATATTATAATG+AGG | - | Chr2:84287495-84287514 | MsG0280011459.01.T01:CDS | 20.0% |
| !! | ACAACTTTAATTAGGAAATT+AGG | + | Chr2:84288140-84288159 | None:intergenic | 20.0% |
| !! | ATAACCATAAACATCAATTA+GGG | + | Chr2:84288629-84288648 | None:intergenic | 20.0% |
| !! | ATTAAATTTGAACATATGCT+TGG | - | Chr2:84288564-84288583 | MsG0280011459.01.T01:CDS | 20.0% |
| !! | GCATATGTTCAAATTTAATT+TGG | + | Chr2:84288563-84288582 | None:intergenic | 20.0% |
| !! | TATTAGCTAAAAGTTACTAT+AGG | + | Chr2:84288469-84288488 | None:intergenic | 20.0% |
| ! | AAATAACTACAAAGCCATAT+GGG | - | Chr2:84288877-84288896 | MsG0280011459.01.T01:intron | 25.0% |
| ! | AAGTTTGAAAAGAAAAGAGA+AGG | - | Chr2:84288506-84288525 | MsG0280011459.01.T01:CDS | 25.0% |
| ! | ATATATATGTTCATGACAAG+GGG | + | Chr2:84288780-84288799 | None:intergenic | 25.0% |
| ! | ATTGATGTTTATGGTTATGT+AGG | - | Chr2:84288631-84288650 | MsG0280011459.01.T01:intron | 25.0% |
| ! | CATAACCATAAACATCAATT+AGG | + | Chr2:84288630-84288649 | None:intergenic | 25.0% |
| ! | CATATATATGTTCATGACAA+GGG | + | Chr2:84288781-84288800 | None:intergenic | 25.0% |
| ! | TATTTAGTGTGTCTAATCTT+TGG | - | Chr2:84287781-84287800 | MsG0280011459.01.T01:CDS | 25.0% |
| ! | TCATATATATGTTCATGACA+AGG | + | Chr2:84288782-84288801 | None:intergenic | 25.0% |
| ! | TGTCATGAACATATATATGA+TGG | - | Chr2:84288782-84288801 | MsG0280011459.01.T01:intron | 25.0% |
| !! | AATATATACCTTTTTGCAAG+AGG | + | Chr2:84287725-84287744 | None:intergenic | 25.0% |
| AGCATTTACAATTCTTGAGT+AGG | + | Chr2:84287623-84287642 | None:intergenic | 30.0% | |
| ATGTTTATGGTTATGTAGGT+AGG | - | Chr2:84288635-84288654 | MsG0280011459.01.T01:intron | 30.0% | |
| CAAATAACTACAAAGCCATA+TGG | - | Chr2:84288876-84288895 | MsG0280011459.01.T01:intron | 30.0% | |
| CTCAAGAATTGTAAATGCTT+CGG | - | Chr2:84287624-84287643 | MsG0280011459.01.T01:CDS | 30.0% | |
| CTTTGCATTATCATCTTCTT+CGG | + | Chr2:84288968-84288987 | None:intergenic | 30.0% | |
| GAATCAATGTCCTATAAACT+CGG | + | Chr2:84287894-84287913 | None:intergenic | 30.0% | |
| GCATTTACAATTCTTGAGTA+GGG | + | Chr2:84287622-84287641 | None:intergenic | 30.0% | |
| GTTCCATTTCTACAGTAAAT+AGG | + | Chr2:84287484-84287503 | None:intergenic | 30.0% | |
| TAATCTAATGTTCGTTGTCA+CGG | - | Chr2:84288407-84288426 | MsG0280011459.01.T01:intron | 30.0% | |
| TAATTAGGAAATTAGGCTGA+AGG | + | Chr2:84288133-84288152 | None:intergenic | 30.0% | |
| TACTTAGCACTTCAATGATA+TGG | + | Chr2:84287827-84287846 | None:intergenic | 30.0% | |
| TCACCTATTTACTGTAGAAA+TGG | - | Chr2:84287478-84287497 | MsG0280011459.01.T01:CDS | 30.0% | |
| TTATGATGATTGATGAGCAT+GGG | + | Chr2:84289044-84289063 | None:intergenic | 30.0% | |
| TTTGCATTATCATCTTCTTC+GGG | + | Chr2:84288967-84288986 | None:intergenic | 30.0% | |
| AAACTACCTGTGTTACAGAT+AGG | - | Chr2:84287866-84287885 | MsG0280011459.01.T01:intron | 35.0% | |
| ACTTGTGCACCAATATACAT+AGG | + | Chr2:84288265-84288284 | None:intergenic | 35.0% | |
| ATTGTGAACCAAAAGACACA+AGG | - | Chr2:84287940-84287959 | MsG0280011459.01.T01:intron | 35.0% | |
| CAAGAATGGAACTTAGAAGA+TGG | - | Chr2:84287651-84287670 | MsG0280011459.01.T01:CDS | 35.0% | |
| CATCTTCTAAGTTCCATTCT+TGG | + | Chr2:84287653-84287672 | None:intergenic | 35.0% | |
| CTTCAATGCAGCAAAAGAAA+TGG | + | Chr2:84288070-84288089 | None:intergenic | 35.0% | |
| GAAATTAGGCTGAAGGATTA+AGG | + | Chr2:84288126-84288145 | None:intergenic | 35.0% | |
| GAAGGATTAAGGAAAAGCTT+TGG | + | Chr2:84288115-84288134 | None:intergenic | 35.0% | |
| GAGTCCCTAATTGATGTTTA+TGG | - | Chr2:84288622-84288641 | MsG0280011459.01.T01:CDS | 35.0% | |
| GATGATATTATCCCCTATGT+CGG | + | Chr2:84288541-84288560 | None:intergenic | 35.0% | |
| GATGCTCAATACTAATAGCA+GGG | - | Chr2:84288691-84288710 | MsG0280011459.01.T01:intron | 35.0% | |
| TAGTTATTTGCAGCTATAGC+TGG | + | Chr2:84288866-84288885 | None:intergenic | 35.0% | |
| TATCTCTTAGCTCCAATACT+TGG | - | Chr2:84288902-84288921 | MsG0280011459.01.T01:intron | 35.0% | |
| TATGATGATTGATGAGCATG+GGG | + | Chr2:84289043-84289062 | None:intergenic | 35.0% | |
| TGATGCTCAATACTAATAGC+AGG | - | Chr2:84288690-84288709 | MsG0280011459.01.T01:intron | 35.0% | |
| ! | ATCTGTAACACAGGTAGTTT+TGG | + | Chr2:84287866-84287885 | None:intergenic | 35.0% |
| ! | GTATATTGGTGCACAAGTTT+TGG | - | Chr2:84288267-84288286 | MsG0280011459.01.T01:intron | 35.0% |
| ! | GTTTTTCACCCTTTTATGAG+TGG | - | Chr2:84288321-84288340 | MsG0280011459.01.T01:intron | 35.0% |
| !! | AAGTTGATCATCTCTAAAGC+TGG | + | Chr2:84289013-84289032 | None:intergenic | 35.0% |
| !! | ACATTGATTCTGATGTTTGC+TGG | - | Chr2:84287904-84287923 | MsG0280011459.01.T01:intron | 35.0% |
| !! | AGTTGATCATCTCTAAAGCT+GGG | + | Chr2:84289012-84289031 | None:intergenic | 35.0% |
| !! | CATTGATTCTGATGTTTGCT+GGG | - | Chr2:84287905-84287924 | MsG0280011459.01.T01:intron | 35.0% |
| AAAAGCTTGACCATATCCTC+CGG | + | Chr2:84288364-84288383 | None:intergenic | 40.0% | |
| AATACTCACAGCTCTTGTGT+CGG | + | Chr2:84288442-84288461 | None:intergenic | 40.0% | |
| AGCTAAGAGATAGACCCATA+TGG | + | Chr2:84288894-84288913 | None:intergenic | 40.0% | |
| ATGAACCCAGTAAGAACTCT+AGG | - | Chr2:84288839-84288858 | MsG0280011459.01.T01:intron | 40.0% | |
| ATGATGATTGATGAGCATGG+GGG | + | Chr2:84289042-84289061 | None:intergenic | 40.0% | |
| ATGTTCATGACAAGGGGATA+GGG | + | Chr2:84288774-84288793 | None:intergenic | 40.0% | |
| CAAAAGAAATGGTGACTGCA+GGG | + | Chr2:84288059-84288078 | None:intergenic | 40.0% | |
| CATAATGAGCAGGTAACTGT+GGG | + | Chr2:84287684-84287703 | None:intergenic | 40.0% | |
| GACTTAAACCCACCAAAAAG+AGG | + | Chr2:84287562-84287581 | None:intergenic | 40.0% | |
| GAGAGTGATAAGTGAGAGTT+AGG | + | Chr2:84288728-84288747 | None:intergenic | 40.0% | |
| TATGTTCATGACAAGGGGAT+AGG | + | Chr2:84288775-84288794 | None:intergenic | 40.0% | |
| TGACTCCACCACTCATAAAA+GGG | + | Chr2:84288332-84288351 | None:intergenic | 40.0% | |
| TTAATTGCTCTTCACGCGAA+GGG | + | Chr2:84288600-84288619 | None:intergenic | 40.0% | |
| TTCATTGACGCTCCTGTTAT+TGG | + | Chr2:84288824-84288843 | None:intergenic | 40.0% | |
| TTGCAGGTGCCTATGTATAT+TGG | - | Chr2:84288253-84288272 | MsG0280011459.01.T01:CDS | 40.0% | |
| ! | TTTCACCCTTTTATGAGTGG+TGG | - | Chr2:84288324-84288343 | MsG0280011459.01.T01:intron | 40.0% |
| !! | GTTGATCATCTCTAAAGCTG+GGG | + | Chr2:84289011-84289030 | None:intergenic | 40.0% |
| !!! | CTTTTGGTTCACAATAGCAG+TGG | + | Chr2:84287935-84287954 | None:intergenic | 40.0% |
| AAGGAAGATGAAGCCGACAT+AGG | - | Chr2:84288525-84288544 | MsG0280011459.01.T01:CDS | 45.0% | |
| AGAACTAGCAGGAATTGCAG+TGG | - | Chr2:84288658-84288677 | MsG0280011459.01.T01:intron | 45.0% | |
| AGGAAGATGAAGCCGACATA+GGG | - | Chr2:84288526-84288545 | MsG0280011459.01.T01:CDS | 45.0% | |
| ATGATCATCATCCTCTCCAC+CGG | - | Chr2:84288009-84288028 | MsG0280011459.01.T01:intron | 45.0% | |
| ATGTAGGTAGGAGAACTAGC+AGG | - | Chr2:84288647-84288666 | MsG0280011459.01.T01:intron | 45.0% | |
| CAGATAGGAGCCGAGTTTAT+AGG | - | Chr2:84287881-84287900 | MsG0280011459.01.T01:intron | 45.0% | |
| CTGGACCTAGAGTTCTTACT+GGG | + | Chr2:84288847-84288866 | None:intergenic | 45.0% | |
| CTTTGGTTACATGCTTCCAC+GGG | + | Chr2:84288098-84288117 | None:intergenic | 45.0% | |
| GAACCAAAAGACACAAGGCT+CGG | - | Chr2:84287945-84287964 | MsG0280011459.01.T01:intron | 45.0% | |
| GAACTAGCAGGAATTGCAGT+GGG | - | Chr2:84288659-84288678 | MsG0280011459.01.T01:intron | 45.0% | |
| GCAAAAGAAATGGTGACTGC+AGG | + | Chr2:84288060-84288079 | None:intergenic | 45.0% | |
| GCATAATGAGCAGGTAACTG+TGG | + | Chr2:84287685-84287704 | None:intergenic | 45.0% | |
| GCTTTGGTTACATGCTTCCA+CGG | + | Chr2:84288099-84288118 | None:intergenic | 45.0% | |
| GGGTTTAAGTCTGAGAGAAG+CGG | - | Chr2:84287571-84287590 | MsG0280011459.01.T01:CDS | 45.0% | |
| GGTTTAAGTCTGAGAGAAGC+GGG | - | Chr2:84287572-84287591 | MsG0280011459.01.T01:CDS | 45.0% | |
| GTGACTCCACCACTCATAAA+AGG | + | Chr2:84288333-84288352 | None:intergenic | 45.0% | |
| GTGCTGCATTTGCTCTCAAA+GGG | - | Chr2:84288299-84288318 | MsG0280011459.01.T01:intron | 45.0% | |
| GTTAATTGCTCTTCACGCGA+AGG | + | Chr2:84288601-84288620 | None:intergenic | 45.0% | |
| TAATTGCTCTTCACGCGAAG+GGG | + | Chr2:84288599-84288618 | None:intergenic | 45.0% | |
| TGTGCTGCATTTGCTCTCAA+AGG | - | Chr2:84288298-84288317 | MsG0280011459.01.T01:intron | 45.0% | |
| TGTTCATGACAAGGGGATAG+GGG | + | Chr2:84288773-84288792 | None:intergenic | 45.0% | |
| ! | ACTCCTGGTGTACCTCTTTT+TGG | - | Chr2:84287547-84287566 | MsG0280011459.01.T01:CDS | 45.0% |
| !! | AATGCTTCGGTGTCCAAGAA+TGG | - | Chr2:84287637-84287656 | MsG0280011459.01.T01:CDS | 45.0% |
| !! | CAATACTTGGAGCTCTAGGT+GGG | - | Chr2:84288915-84288934 | MsG0280011459.01.T01:intron | 45.0% |
| !! | CTGGTGTACCTCTTTTTGGT+GGG | - | Chr2:84287551-84287570 | MsG0280011459.01.T01:CDS | 45.0% |
| !! | TACCTTTTTGCAAGAGGCAC+AGG | + | Chr2:84287719-84287738 | None:intergenic | 45.0% |
| AAGGCTCGGAGACTCTGATT+GGG | - | Chr2:84287959-84287978 | MsG0280011459.01.T01:intron | 50.0% | |
| AAGTCTGAGAGAAGCGGGAA+TGG | - | Chr2:84287577-84287596 | MsG0280011459.01.T01:CDS | 50.0% | |
| AATGTTCGTTGTCACGGCAG+TGG | - | Chr2:84288413-84288432 | MsG0280011459.01.T01:intron | 50.0% | |
| ACCATATCCTCCGGAAGGAA+CGG | + | Chr2:84288355-84288374 | None:intergenic | 50.0% | |
| ATTGGGTGTGCTACCTCTAC+TGG | - | Chr2:84287976-84287995 | MsG0280011459.01.T01:intron | 50.0% | |
| CATAACCGCAAGACCAGTAG+AGG | + | Chr2:84287992-84288011 | None:intergenic | 50.0% | |
| CCACCTAGAGCTCCAAGTAT+TGG | + | Chr2:84288917-84288936 | None:intergenic | 50.0% | |
| CTCCTGTGCCTCTTGCAAAA+AGG | - | Chr2:84287714-84287733 | MsG0280011459.01.T01:CDS | 50.0% | |
| GCTCCAATACTTGGAGCTCT+AGG | - | Chr2:84288911-84288930 | MsG0280011459.01.T01:intron | 50.0% | |
| GCTGGACCTAGAGTTCTTAC+TGG | + | Chr2:84288848-84288867 | None:intergenic | 50.0% | |
| GGAAGATGAAGCCGACATAG+GGG | - | Chr2:84288527-84288546 | MsG0280011459.01.T01:CDS | 50.0% | |
| GTTCATGACAAGGGGATAGG+GGG | + | Chr2:84288772-84288791 | None:intergenic | 50.0% | |
| TCGGCTCCTATCTGTAACAC+AGG | + | Chr2:84287875-84287894 | None:intergenic | 50.0% | |
| TGAGATGAGCACCAGAGATG+TGG | + | Chr2:84288035-84288054 | None:intergenic | 50.0% | |
| ! | CCACCAAAAAGAGGTACACC+AGG | + | Chr2:84287553-84287572 | None:intergenic | 50.0% |
| ! | CCTGGTGTACCTCTTTTTGG+TGG | - | Chr2:84287550-84287569 | MsG0280011459.01.T01:CDS | 50.0% |
| !! | CCAATACTTGGAGCTCTAGG+TGG | - | Chr2:84288914-84288933 | MsG0280011459.01.T01:intron | 50.0% |
| !! | CTTTTTGCAAGAGGCACAGG+AGG | + | Chr2:84287716-84287735 | None:intergenic | 50.0% |
| !! | TCTCCGAGCCTTGTGTCTTT+TGG | + | Chr2:84287951-84287970 | None:intergenic | 50.0% |
| !! | TGCTACCTCTACTGGTCTTG+CGG | - | Chr2:84287984-84288003 | MsG0280011459.01.T01:intron | 50.0% |
| ACAAGGGGATAGGGGGAAGA+AGG | + | Chr2:84288765-84288784 | None:intergenic | 55.0% | |
| ACCGTTCCTTCCGGAGGATA+TGG | - | Chr2:84288351-84288370 | MsG0280011459.01.T01:intron | 55.0% | |
| ACTCACAGCTCTTGTGTCGG+TGG | + | Chr2:84288439-84288458 | None:intergenic | 55.0% | |
| ATGAGCACCAGAGATGTGGC+CGG | + | Chr2:84288031-84288050 | None:intergenic | 55.0% | |
| CAAGGCTCGGAGACTCTGAT+TGG | - | Chr2:84287958-84287977 | MsG0280011459.01.T01:intron | 55.0% | |
| CCATCAACACCAGCAACACC+AGG | - | Chr2:84287523-84287542 | MsG0280011459.01.T01:CDS | 55.0% | |
| CTGCGTTGCAGGCCAATAAC+AGG | - | Chr2:84288809-84288828 | MsG0280011459.01.T01:intron | 55.0% | |
| GCTTGACCATATCCTCCGGA+AGG | + | Chr2:84288360-84288379 | None:intergenic | 55.0% | |
| ! | ATGATGGTGCACTGCGTTGC+AGG | - | Chr2:84288798-84288817 | MsG0280011459.01.T01:intron | 55.0% |
| ! | CTGCATTGAAGCACTTCCCG+TGG | - | Chr2:84288079-84288098 | MsG0280011459.01.T01:intron | 55.0% |
| ! | TTGCAAGAGGCACAGGAGGA+GGG | + | Chr2:84287712-84287731 | None:intergenic | 55.0% |
| ! | TTTGCAAGAGGCACAGGAGG+AGG | + | Chr2:84287713-84287732 | None:intergenic | 55.0% |
| !! | CCTGGTGTTGCTGGTGTTGA+TGG | + | Chr2:84287526-84287545 | None:intergenic | 55.0% |
| GAGGGGGTGGCATAATGAGC+AGG | + | Chr2:84287694-84287713 | None:intergenic | 60.0% | |
| GGTGGAGTCACCGTTCCTTC+CGG | - | Chr2:84288342-84288361 | MsG0280011459.01.T01:intron | 60.0% | |
| ! | TGCAAGAGGCACAGGAGGAG+GGG | + | Chr2:84287711-84287730 | None:intergenic | 60.0% |
| !! | ACTTGGAGCTCTAGGTGGGC+AGG | - | Chr2:84288919-84288938 | MsG0280011459.01.T01:intron | 60.0% |
| !! | AGAGGTACACCAGGAGTGCC+TGG | + | Chr2:84287544-84287563 | None:intergenic | 60.0% |
| AGCACCAGAGATGTGGCCGG+TGG | + | Chr2:84288028-84288047 | None:intergenic | 65.0% | |
| CAGAGATGTGGCCGGTGGAG+AGG | + | Chr2:84288023-84288042 | None:intergenic | 65.0% | |
| CCAGCAACACCAGGCACTCC+TGG | - | Chr2:84287532-84287551 | MsG0280011459.01.T01:CDS | 65.0% | |
| CTCTCCACCGGCCACATCTC+TGG | - | Chr2:84288021-84288040 | MsG0280011459.01.T01:intron | 65.0% | |
| GGAGTCACCGTTCCTTCCGG+AGG | - | Chr2:84288345-84288364 | MsG0280011459.01.T01:intron | 65.0% | |
| ! | GCAAGAGGCACAGGAGGAGG+GGG | + | Chr2:84287710-84287729 | None:intergenic | 65.0% |
| !! | CCAGGAGTGCCTGGTGTTGC+TGG | + | Chr2:84287535-84287554 | None:intergenic | 65.0% |
| ! | AGAGGCACAGGAGGAGGGGG+TGG | + | Chr2:84287707-84287726 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr2 | gene | 84287469 | 84289063 | 84287469 | ID=MsG0280011459.01;Name=MsG0280011459.01 |
| Chr2 | mRNA | 84287469 | 84289063 | 84287469 | ID=MsG0280011459.01.T01;Parent=MsG0280011459.01;Name=MsG0280011459.01.T01;_AED=0.49;_eAED=0.54;_QI=0|0|0|1|0.66|0.5|4|0|297 |
| Chr2 | exon | 84288934 | 84289063 | 84288934 | ID=MsG0280011459.01.T01:exon:12943;Parent=MsG0280011459.01.T01 |
| Chr2 | exon | 84288490 | 84288648 | 84288490 | ID=MsG0280011459.01.T01:exon:12942;Parent=MsG0280011459.01.T01 |
| Chr2 | exon | 84288080 | 84288273 | 84288080 | ID=MsG0280011459.01.T01:exon:12941;Parent=MsG0280011459.01.T01 |
| Chr2 | exon | 84287469 | 84287879 | 84287469 | ID=MsG0280011459.01.T01:exon:12940;Parent=MsG0280011459.01.T01 |
| Chr2 | CDS | 84288934 | 84289063 | 84288934 | ID=MsG0280011459.01.T01:cds;Parent=MsG0280011459.01.T01 |
| Chr2 | CDS | 84288490 | 84288648 | 84288490 | ID=MsG0280011459.01.T01:cds;Parent=MsG0280011459.01.T01 |
| Chr2 | CDS | 84288080 | 84288273 | 84288080 | ID=MsG0280011459.01.T01:cds;Parent=MsG0280011459.01.T01 |
| Chr2 | CDS | 84287469 | 84287879 | 84287469 | ID=MsG0280011459.01.T01:cds;Parent=MsG0280011459.01.T01 |
| Gene Sequence |
| Protein sequence |
