Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380016959.01.T01 | XP_003602802.1 | 98.582 | 564 | 8 | 0 | 1 | 564 | 1 | 564 | 0 | 1131 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380016959.01.T01 | F4I9E1 | 25.088 | 570 | 370 | 18 | 14 | 564 | 42 | 573 | 4.58E-31 | 130 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380016959.01.T01 | G7J3V8 | 98.582 | 564 | 8 | 0 | 1 | 564 | 1 | 564 | 0.0 | 1131 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0380014179.01 | MsG0380016959.01 | 0.803108 | 4.080325e-49 | 2.033051e-46 |
| MsG0380014678.01 | MsG0380016959.01 | 0.831025 | 2.108324e-55 | 2.260029e-52 |
| MsG0380016959.01 | MsG0780040105.01 | 0.819040 | 1.430873e-52 | 1.089085e-49 |
| MsG0380016959.01 | MsG0880042512.01 | 0.805314 | 1.417328e-49 | 7.474516e-47 |
| MsG0380016959.01 | MsG0880045312.01 | 0.846564 | 2.007191e-59 | 3.468882e-56 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380016959.01.T01 | MTR_3g099150 | 98.582 | 564 | 8 | 0 | 1 | 564 | 1 | 564 | 0.0 | 1131 |
| MsG0380016959.01.T01 | MTR_7g029015 | 50.252 | 595 | 247 | 6 | 1 | 559 | 1 | 582 | 0.0 | 555 |
| MsG0380016959.01.T01 | MTR_1g111510 | 35.000 | 560 | 326 | 10 | 10 | 554 | 21 | 557 | 2.54e-101 | 318 |
| MsG0380016959.01.T01 | MTR_1g111540 | 34.220 | 564 | 325 | 10 | 10 | 554 | 21 | 557 | 4.82e-100 | 315 |
| MsG0380016959.01.T01 | MTR_2g450710 | 33.039 | 566 | 341 | 6 | 16 | 561 | 13 | 560 | 2.64e-99 | 312 |
| MsG0380016959.01.T01 | MTR_1g111530 | 34.513 | 565 | 312 | 10 | 15 | 554 | 22 | 553 | 4.92e-99 | 312 |
| MsG0380016959.01.T01 | MTR_5g022380 | 35.484 | 558 | 312 | 11 | 9 | 557 | 7 | 525 | 9.95e-98 | 307 |
| MsG0380016959.01.T01 | MTR_1g111550 | 34.477 | 554 | 326 | 10 | 15 | 554 | 25 | 555 | 2.13e-96 | 306 |
| MsG0380016959.01.T01 | MTR_4g116210 | 32.302 | 582 | 349 | 7 | 7 | 561 | 3 | 566 | 3.79e-95 | 302 |
| MsG0380016959.01.T01 | MTR_4g073690 | 34.608 | 549 | 327 | 7 | 15 | 557 | 15 | 537 | 7.20e-95 | 300 |
| MsG0380016959.01.T01 | MTR_7g102880 | 34.955 | 555 | 332 | 8 | 15 | 554 | 29 | 569 | 1.61e-92 | 296 |
| MsG0380016959.01.T01 | MTR_1g050550 | 33.692 | 558 | 335 | 9 | 15 | 554 | 24 | 564 | 4.39e-90 | 289 |
| MsG0380016959.01.T01 | MTR_1g059080 | 32.337 | 569 | 341 | 10 | 6 | 554 | 11 | 555 | 1.01e-85 | 278 |
| MsG0380016959.01.T01 | MTR_2g100400 | 31.634 | 569 | 324 | 10 | 10 | 554 | 2 | 529 | 1.54e-80 | 263 |
| MsG0380016959.01.T01 | MTR_5g090570 | 31.522 | 552 | 332 | 10 | 15 | 556 | 11 | 526 | 2.47e-73 | 243 |
| MsG0380016959.01.T01 | MTR_4g073690 | 36.031 | 383 | 237 | 4 | 15 | 392 | 15 | 394 | 1.25e-69 | 229 |
| MsG0380016959.01.T01 | MTR_5g022380 | 34.361 | 454 | 250 | 11 | 113 | 557 | 1 | 415 | 5.67e-65 | 218 |
| MsG0380016959.01.T01 | MTR_7g083660 | 25.699 | 572 | 368 | 11 | 13 | 553 | 5 | 550 | 3.64e-39 | 151 |
| MsG0380016959.01.T01 | MTR_2g104250 | 25.937 | 347 | 187 | 5 | 231 | 561 | 4 | 296 | 1.29e-33 | 130 |
| MsG0380016959.01.T01 | MTR_5g026350 | 24.109 | 589 | 362 | 19 | 14 | 553 | 6 | 558 | 1.76e-29 | 123 |
| MsG0380016959.01.T01 | MTR_3g466040 | 23.529 | 544 | 375 | 7 | 15 | 554 | 7 | 513 | 7.91e-29 | 120 |
| MsG0380016959.01.T01 | MTR_3g466110 | 22.803 | 478 | 358 | 4 | 15 | 490 | 7 | 475 | 1.55e-26 | 113 |
| MsG0380016959.01.T01 | MTR_8g071920 | 28.144 | 167 | 118 | 2 | 14 | 180 | 47 | 211 | 3.24e-15 | 79.3 |
| MsG0380016959.01.T01 | MTR_8g071920 | 26.482 | 253 | 155 | 7 | 311 | 556 | 374 | 602 | 1.17e-12 | 71.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380016959.01.T01 | AT5G50520 | 50.090 | 557 | 246 | 8 | 5 | 557 | 6 | 534 | 0.0 | 551 |
| MsG0380016959.01.T01 | AT5G50630 | 50.090 | 557 | 246 | 8 | 5 | 557 | 6 | 534 | 0.0 | 551 |
| MsG0380016959.01.T01 | AT3G01930 | 49.834 | 604 | 236 | 8 | 3 | 562 | 4 | 584 | 0.0 | 544 |
| MsG0380016959.01.T01 | AT5G14120 | 47.739 | 597 | 254 | 6 | 3 | 562 | 4 | 579 | 0.0 | 530 |
| MsG0380016959.01.T01 | AT3G01930 | 47.166 | 494 | 194 | 8 | 113 | 562 | 1 | 471 | 1.30e-134 | 400 |
| MsG0380016959.01.T01 | AT3G01930 | 51.025 | 439 | 165 | 6 | 3 | 398 | 4 | 435 | 2.96e-134 | 398 |
| MsG0380016959.01.T01 | AT2G39210 | 36.092 | 568 | 310 | 11 | 15 | 557 | 21 | 560 | 3.54e-105 | 329 |
| MsG0380016959.01.T01 | AT2G28120 | 35.135 | 555 | 329 | 9 | 11 | 554 | 13 | 547 | 3.96e-99 | 312 |
| MsG0380016959.01.T01 | AT4G34950 | 33.795 | 577 | 320 | 13 | 15 | 562 | 16 | 559 | 1.15e-97 | 308 |
| MsG0380016959.01.T01 | AT1G80530 | 32.470 | 579 | 337 | 7 | 7 | 561 | 3 | 551 | 1.38e-92 | 295 |
| MsG0380016959.01.T01 | AT2G16660 | 33.979 | 568 | 322 | 11 | 5 | 557 | 4 | 533 | 1.89e-90 | 289 |
| MsG0380016959.01.T01 | AT1G74780 | 32.389 | 565 | 313 | 12 | 15 | 556 | 7 | 525 | 1.18e-79 | 260 |
| MsG0380016959.01.T01 | AT2G34350 | 30.511 | 567 | 324 | 10 | 10 | 556 | 2 | 518 | 4.01e-79 | 258 |
| MsG0380016959.01.T01 | AT2G34350 | 30.511 | 567 | 324 | 10 | 10 | 556 | 2 | 518 | 4.01e-79 | 258 |
| MsG0380016959.01.T01 | AT1G18940 | 30.427 | 562 | 321 | 11 | 15 | 557 | 9 | 519 | 5.54e-73 | 242 |
| MsG0380016959.01.T01 | AT2G34355 | 28.975 | 566 | 328 | 13 | 12 | 556 | 4 | 516 | 5.82e-71 | 237 |
| MsG0380016959.01.T01 | AT2G16660 | 34.739 | 403 | 234 | 7 | 4 | 392 | 3 | 390 | 3.75e-65 | 218 |
| MsG0380016959.01.T01 | AT2G34355 | 28.469 | 418 | 233 | 12 | 152 | 556 | 2 | 366 | 9.73e-41 | 152 |
| MsG0380016959.01.T01 | AT4G19450 | 27.069 | 580 | 359 | 16 | 14 | 555 | 6 | 559 | 3.42e-40 | 154 |
| MsG0380016959.01.T01 | AT5G45275 | 24.958 | 589 | 358 | 15 | 14 | 555 | 6 | 557 | 5.55e-35 | 139 |
| MsG0380016959.01.T01 | AT3G01630 | 24.468 | 564 | 372 | 13 | 14 | 559 | 40 | 567 | 3.96e-33 | 134 |
| MsG0380016959.01.T01 | AT3G01630 | 24.468 | 564 | 372 | 13 | 14 | 559 | 22 | 549 | 4.01e-33 | 133 |
| MsG0380016959.01.T01 | AT4G19450 | 27.228 | 404 | 253 | 12 | 14 | 381 | 6 | 404 | 8.64e-33 | 130 |
| MsG0380016959.01.T01 | AT1G31470 | 25.088 | 570 | 370 | 18 | 14 | 564 | 42 | 573 | 4.67e-32 | 130 |
| MsG0380016959.01.T01 | AT2G30300 | 23.693 | 574 | 321 | 14 | 16 | 555 | 8 | 498 | 8.88e-27 | 114 |
Find 151 sgRNAs with CRISPR-Local
Find 195 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGCTTCCTTCTTTGCCTTTA+TGG | 0.120915 | 3:-90014324 | MsG0380016959.01.T01:CDS |
| GCAGCAACTTCAGAAGTATT+TGG | 0.160612 | 3:-90012435 | MsG0380016959.01.T01:CDS |
| CTTAAGTGTGGCTAAGGATT+TGG | 0.185948 | 3:-90014470 | MsG0380016959.01.T01:CDS |
| GTTGGATCTCTGCTTGTATC+TGG | 0.224970 | 3:-90012363 | MsG0380016959.01.T01:CDS |
| AAGCACAAAATACAAATTTA+TGG | 0.229850 | 3:-90012297 | MsG0380016959.01.T01:CDS |
| TCTCTTAGCTGCCTATTTAA+TGG | 0.232957 | 3:-90013434 | MsG0380016959.01.T01:CDS |
| AAGCAACTCGTTATTATTTC+CGG | 0.233736 | 3:+90012239 | None:intergenic |
| ATGTTTGTTTCTATCGTCTT+AGG | 0.238459 | 3:-90013091 | MsG0380016959.01.T01:CDS |
| ACCAACACGGCCTAGGAAAT+TGG | 0.240141 | 3:+90012970 | None:intergenic |
| GGGTCAGATTTGTCAATCTT+TGG | 0.262023 | 3:-90013035 | MsG0380016959.01.T01:CDS |
| CTTCAGAATGTTGTTGGTTA+TGG | 0.262768 | 3:-90014373 | MsG0380016959.01.T01:CDS |
| TTATGGAGCCTCCGCGAAAT+TGG | 0.264431 | 3:-90012280 | MsG0380016959.01.T01:CDS |
| TTGGCTTAAGCGGCGCAATT+TGG | 0.265189 | 3:-90013633 | MsG0380016959.01.T01:CDS |
| TTCATCTTGGTGGGACAAAA+TGG | 0.273357 | 3:-90013748 | MsG0380016959.01.T01:CDS |
| AATTATAGTTCCTATTATAT+TGG | 0.276451 | 3:-90013323 | MsG0380016959.01.T01:CDS |
| AAGTCTCTATCTTGAGTTTA+GGG | 0.284035 | 3:-90012084 | MsG0380016959.01.T01:exon |
| CTCTTAGCTGCCTATTTAAT+GGG | 0.284213 | 3:-90013433 | MsG0380016959.01.T01:CDS |
| TTATTTCCGGTACCATAATA+AGG | 0.284663 | 3:+90012252 | None:intergenic |
| CAACAAAATTCCCATTAAAT+AGG | 0.293559 | 3:+90013423 | None:intergenic |
| AATATAATAGGAACTATAAT+TGG | 0.296483 | 3:+90013325 | None:intergenic |
| TCAGCAAAGCTTGGCCTGTT+TGG | 0.301872 | 3:-90014417 | MsG0380016959.01.T01:CDS |
| AAATTGGCAATGCCTTATTA+TGG | 0.304344 | 3:-90012264 | MsG0380016959.01.T01:CDS |
| GAGAAGAAAACCAATATAAT+AGG | 0.316323 | 3:+90013313 | None:intergenic |
| ATAGCAATAACCATGGGTTT+TGG | 0.320887 | 3:-90012486 | MsG0380016959.01.T01:CDS |
| AAAATTAAATTTGCAATTGT+TGG | 0.324117 | 3:-90012052 | MsG0380016959.01.T01:three_prime_UTR |
| TTAAGTGTGGCTAAGGATTT+GGG | 0.328079 | 3:-90014469 | MsG0380016959.01.T01:CDS |
| CAGCAAAGCTTGGCCTGTTT+GGG | 0.333110 | 3:-90014416 | MsG0380016959.01.T01:CDS |
| CAGCAACTTCAGAAGTATTT+GGG | 0.333578 | 3:-90012434 | MsG0380016959.01.T01:CDS |
| ATTCCCAACTTTATGGTAAT+GGG | 0.335479 | 3:-90012107 | MsG0380016959.01.T01:CDS |
| GCTAGAGAATATGTTTGATT+TGG | 0.340300 | 3:-90013401 | MsG0380016959.01.T01:CDS |
| TATTCCCAACTTTATGGTAA+TGG | 0.342343 | 3:-90012108 | MsG0380016959.01.T01:CDS |
| AAATTAAATTTGCAATTGTT+GGG | 0.345446 | 3:-90012051 | MsG0380016959.01.T01:three_prime_UTR |
| GAAGTCTCTATCTTGAGTTT+AGG | 0.351073 | 3:-90012085 | MsG0380016959.01.T01:exon |
| ATCTTCAAAAGTAACATGTT+TGG | 0.359540 | 3:+90013195 | None:intergenic |
| GGTCAGATTTGTCAATCTTT+GGG | 0.365348 | 3:-90013034 | MsG0380016959.01.T01:CDS |
| GTTTGGGCAGTTATACTTGT+TGG | 0.387389 | 3:-90014400 | MsG0380016959.01.T01:CDS |
| GTTTCTATCGTCTTAGGTTG+TGG | 0.394738 | 3:-90013085 | MsG0380016959.01.T01:CDS |
| AAAATCAAAGAGGCTTGATC+AGG | 0.403361 | 3:+90013583 | None:intergenic |
| TATTTGGGTTAAAGAACTTT+GGG | 0.404022 | 3:-90012419 | MsG0380016959.01.T01:CDS |
| GCAGGAACAGCTTACATGTT+TGG | 0.404543 | 3:-90014550 | MsG0380016959.01.T01:CDS |
| ATCGTCTTAGGTTGTGGATC+AGG | 0.406553 | 3:-90013079 | MsG0380016959.01.T01:CDS |
| GTAGTTTGCTTGGTTGCAGC+TGG | 0.409953 | 3:-90012168 | MsG0380016959.01.T01:CDS |
| TCTAGACCCTCTGATGAATC+AGG | 0.413206 | 3:-90013484 | MsG0380016959.01.T01:CDS |
| ATTTACCATTGCTTGTGTTA+AGG | 0.413356 | 3:+90013129 | None:intergenic |
| TTGTTGGTTATGGTCTTGTT+TGG | 0.418799 | 3:-90014363 | MsG0380016959.01.T01:CDS |
| TACTATACCATAGGTTTGGT+TGG | 0.429856 | 3:-90012522 | MsG0380016959.01.T01:CDS |
| GACAACGTTGGACTTCTAGC+TGG | 0.436727 | 3:-90014445 | MsG0380016959.01.T01:CDS |
| AGCTTTCTTAAGTGTGGCTA+AGG | 0.438962 | 3:-90014476 | MsG0380016959.01.T01:CDS |
| GTATTTGGGTTAAAGAACTT+TGG | 0.439987 | 3:-90012420 | MsG0380016959.01.T01:CDS |
| AAAGTTAAAGAAACCATTGC+TGG | 0.440366 | 3:+90013544 | None:intergenic |
| GGTGTTTGTGTGTGCAATGT+GGG | 0.443279 | 3:-90014584 | MsG0380016959.01.T01:CDS |
| CACACACATACTGTCCATAA+AGG | 0.443962 | 3:+90014310 | None:intergenic |
| CTCCTACTATACCATAGGTT+TGG | 0.445658 | 3:-90012526 | MsG0380016959.01.T01:CDS |
| ACTTCCCATTACCATAAAGT+TGG | 0.446345 | 3:+90012103 | None:intergenic |
| ATTGCCAACGCCACAAGTCT+CGG | 0.458481 | 3:+90012576 | None:intergenic |
| AGAAAAGTTGAAGAAATTTG+TGG | 0.464182 | 3:-90014620 | MsG0380016959.01.T01:CDS |
| CTTCCCATTACCATAAAGTT+GGG | 0.464254 | 3:+90012104 | None:intergenic |
| GGTGTCCTTCAGAATGTTGT+TGG | 0.468337 | 3:-90014379 | MsG0380016959.01.T01:CDS |
| TTCCTAGGCCGTGTTGGTGG+CGG | 0.469820 | 3:-90012965 | MsG0380016959.01.T01:CDS |
| ATGTGGGATATGTCATTTGC+AGG | 0.471152 | 3:-90014568 | MsG0380016959.01.T01:CDS |
| ATATCCCTACCACGGGGCCT+CGG | 0.474408 | 3:+90013668 | None:intergenic |
| ATCTCTGCTTGTATCTGGAT+TGG | 0.476420 | 3:-90012358 | MsG0380016959.01.T01:CDS |
| CTTACAATTGCTAGCCCAGT+TGG | 0.478016 | 3:-90012381 | MsG0380016959.01.T01:CDS |
| CAATGTTAACATTTATGTAT+CGG | 0.479065 | 3:-90013005 | MsG0380016959.01.T01:CDS |
| ACAAGTATAACTGCCCAAAC+AGG | 0.483574 | 3:+90014403 | None:intergenic |
| ATTTGTTATTCCTTGACTTG+TGG | 0.484082 | 3:-90012201 | MsG0380016959.01.T01:CDS |
| GAAAACCGAGGCCCCGTGGT+AGG | 0.484749 | 3:-90013673 | MsG0380016959.01.T01:CDS |
| GAAAAGTTGAAGAAATTTGT+GGG | 0.485863 | 3:-90014619 | MsG0380016959.01.T01:CDS |
| GATTGATTAAAAGTATGAAC+AGG | 0.486679 | 3:+90013505 | None:intergenic |
| TGCTAATGCAATTGACCAAT+GGG | 0.487067 | 3:+90012455 | None:intergenic |
| AAAGGATTCGTTGGCTTAAG+CGG | 0.491176 | 3:-90013643 | MsG0380016959.01.T01:CDS |
| AAATAATACTCAAACCTTGT+GGG | 0.494390 | 3:+90012010 | None:intergenic |
| GCAATGCCTTATTATGGTAC+CGG | 0.495270 | 3:-90012258 | MsG0380016959.01.T01:CDS |
| TCATTGTTCAAAGGACTAAG+AGG | 0.496212 | 3:-90012134 | MsG0380016959.01.T01:CDS |
| ACTGTCCATAAAGGCAAAGA+AGG | 0.500741 | 3:+90014319 | None:intergenic |
| ATAAGATAAGCAGCCTAGCT+AGG | 0.501618 | 3:-90014676 | MsG0380016959.01.T01:five_prime_UTR |
| TATCAATAAGCTACCTAGCT+AGG | 0.502972 | 3:+90014663 | None:intergenic |
| TGCAAAATGTTTCACCCACA+AGG | 0.507402 | 3:-90012024 | MsG0380016959.01.T01:three_prime_UTR |
| ATTCAAGCAGTGATGTCCTT+GGG | 0.509232 | 3:-90012552 | MsG0380016959.01.T01:CDS |
| TCCAATTTCCTAGGCCGTGT+TGG | 0.509421 | 3:-90012971 | MsG0380016959.01.T01:CDS |
| GATACAAGCAGAGATCCAAC+TGG | 0.510888 | 3:+90012366 | None:intergenic |
| GATTCAAGCAGTGATGTCCT+TGG | 0.514626 | 3:-90012553 | MsG0380016959.01.T01:CDS |
| GGGATATTGAAAGGATTCGT+TGG | 0.515288 | 3:-90013652 | MsG0380016959.01.T01:CDS |
| ATACTACAACACAGCAGCAT+TGG | 0.515438 | 3:-90013719 | MsG0380016959.01.T01:CDS |
| ACAACGTTGGACTTCTAGCT+GGG | 0.518106 | 3:-90014444 | MsG0380016959.01.T01:CDS |
| AACTTGTCCAACCAAACCTA+TGG | 0.519795 | 3:+90012515 | None:intergenic |
| TGAGTTTGATCATTGTTCAA+AGG | 0.522810 | 3:-90012143 | MsG0380016959.01.T01:CDS |
| CTGGGTTTATCAGCAAAGCT+TGG | 0.525007 | 3:-90014426 | MsG0380016959.01.T01:CDS |
| TTGCCAACGCCACAAGTCTC+GGG | 0.527950 | 3:+90012577 | None:intergenic |
| AACGAGTTGCTTCTTTGCGA+AGG | 0.528487 | 3:-90012228 | MsG0380016959.01.T01:CDS |
| ATCAGCATATCCAATTTCCT+AGG | 0.530608 | 3:-90012980 | MsG0380016959.01.T01:CDS |
| AATTAAATTTGCAATTGTTG+GGG | 0.531399 | 3:-90012050 | MsG0380016959.01.T01:three_prime_UTR |
| AGGTGTAGTTGCTGCAACAA+TGG | 0.531721 | 3:+90013249 | None:intergenic |
| TGCTAAAATTCCACAAGTCA+AGG | 0.533451 | 3:+90012191 | None:intergenic |
| ATTAAATTTGCAATTGTTGG+GGG | 0.534670 | 3:-90012049 | MsG0380016959.01.T01:three_prime_UTR |
| TTAAATTTGCAATTGTTGGG+GGG | 0.535850 | 3:-90012048 | MsG0380016959.01.T01:three_prime_UTR |
| AACCAAACCTATGGTATAGT+AGG | 0.541846 | 3:+90012524 | None:intergenic |
| CCTTTCAATATCCCTACCAC+GGG | 0.542176 | 3:+90013661 | None:intergenic |
| TAAATTTGCAATTGTTGGGG+GGG | 0.543482 | 3:-90012047 | MsG0380016959.01.T01:three_prime_UTR |
| CCCATGCTGCTCTTTATGAC+TGG | 0.544672 | 3:+90014517 | None:intergenic |
| CAAATAATACTCAAACCTTG+TGG | 0.548459 | 3:+90012009 | None:intergenic |
| GGACTCTCCTACTATACCAT+AGG | 0.548639 | 3:-90012531 | MsG0380016959.01.T01:CDS |
| TGGTGTTTGTGTGTGCAATG+TGG | 0.552532 | 3:-90014585 | MsG0380016959.01.T01:CDS |
| AATTTCCTAGGCCGTGTTGG+TGG | 0.553242 | 3:-90012968 | MsG0380016959.01.T01:CDS |
| AGCCGCCACCAACACGGCCT+AGG | 0.556029 | 3:+90012963 | None:intergenic |
| AGAAATTTGTGGGACACAGA+TGG | 0.556960 | 3:-90014609 | MsG0380016959.01.T01:CDS |
| ATAAGGCATTGCCAATTTCG+CGG | 0.557317 | 3:+90012269 | None:intergenic |
| AAAACCGAGGCCCCGTGGTA+GGG | 0.558213 | 3:-90013672 | MsG0380016959.01.T01:CDS |
| GTAAAATCCTCTCCTCTATG+TGG | 0.564577 | 3:+90013151 | None:intergenic |
| CCAGTCATAAAGAGCAGCAT+GGG | 0.570468 | 3:-90014517 | MsG0380016959.01.T01:CDS |
| CATAGCAGTTGGTCCAGCAA+TGG | 0.571113 | 3:-90013557 | MsG0380016959.01.T01:CDS |
| CTGCTAATGCAATTGACCAA+TGG | 0.572591 | 3:+90012454 | None:intergenic |
| ATACCCGAGACTTGTGGCGT+TGG | 0.574402 | 3:-90012580 | MsG0380016959.01.T01:CDS |
| ATGAATCCTGATTCATCAGA+GGG | 0.575878 | 3:+90013478 | None:intergenic |
| GCAAGTAGCTTTCTTAAGTG+TGG | 0.579267 | 3:-90014482 | MsG0380016959.01.T01:CDS |
| TAATATCATCACAGTGAAGT+GGG | 0.583302 | 3:-90014710 | None:intergenic |
| ATAATATCATCACAGTGAAG+TGG | 0.587032 | 3:-90014711 | None:intergenic |
| TGCTATGATGAAAATCAAAG+AGG | 0.588102 | 3:+90013573 | None:intergenic |
| TTCTGGGAAACTTTGCACAC+AGG | 0.588869 | 3:+90013693 | None:intergenic |
| TCTTCTCTGAAGTTATAGTG+AGG | 0.594043 | 3:-90012940 | MsG0380016959.01.T01:intron |
| GAAATTTGTGGGACACAGAT+GGG | 0.596755 | 3:-90014608 | MsG0380016959.01.T01:CDS |
| TTTGGCTTGTTGTAACACAC+AGG | 0.597277 | 3:-90014345 | MsG0380016959.01.T01:CDS |
| TCTTGAGTTTAGGGGAGCAG+AGG | 0.602057 | 3:-90012075 | MsG0380016959.01.T01:exon |
| TCACTAATCTCATTGTGCAT+AGG | 0.602939 | 3:+90013229 | None:intergenic |
| TCCTTTCAATATCCCTACCA+CGG | 0.603422 | 3:+90013660 | None:intergenic |
| ACCAGTCATAAAGAGCAGCA+TGG | 0.605771 | 3:-90014518 | MsG0380016959.01.T01:CDS |
| AAGGATTTGGGTGACAACGT+TGG | 0.607484 | 3:-90014457 | MsG0380016959.01.T01:CDS |
| AAATCAAAGAGGCTTGATCA+GGG | 0.611738 | 3:+90013584 | None:intergenic |
| ATTTGGATACCCGAGACTTG+TGG | 0.615622 | 3:-90012586 | MsG0380016959.01.T01:CDS |
| TATGTGATAGCAATAACCAT+GGG | 0.616249 | 3:-90012492 | MsG0380016959.01.T01:CDS |
| TCACAGTGAAGTGGGAAGAG+AGG | 0.617386 | 3:-90014702 | MsG0380016959.01.T01:five_prime_UTR |
| CATAACCAACAACATTCTGA+AGG | 0.619633 | 3:+90014374 | None:intergenic |
| CATGAATCCTGATTCATCAG+AGG | 0.621943 | 3:+90013477 | None:intergenic |
| AGAAGAAGCCGCCACCAACA+CGG | 0.624134 | 3:+90012957 | None:intergenic |
| CCCGTGGTAGGGATATTGAA+AGG | 0.631908 | 3:-90013661 | MsG0380016959.01.T01:CDS |
| GTAGTTGCTGCAACAATGGA+TGG | 0.634037 | 3:+90013253 | None:intergenic |
| TAGCTTATTGATAAGCAACA+TGG | 0.638232 | 3:-90014653 | MsG0380016959.01.T01:exon |
| TTATGTGATAGCAATAACCA+TGG | 0.640331 | 3:-90012493 | MsG0380016959.01.T01:CDS |
| GGATCCATATCCAAAACCCA+TGG | 0.641880 | 3:+90012476 | None:intergenic |
| AGTCTCTATCTTGAGTTTAG+GGG | 0.646958 | 3:-90012083 | MsG0380016959.01.T01:exon |
| AAATGCTCCACATAGAGGAG+AGG | 0.647420 | 3:-90013158 | MsG0380016959.01.T01:CDS |
| CCCAGAAAACCGAGGCCCCG+TGG | 0.651101 | 3:-90013677 | MsG0380016959.01.T01:CDS |
| ATTGACAATGATAAACAACA+TGG | 0.655646 | 3:-90013056 | MsG0380016959.01.T01:CDS |
| CAAAGTTTCCCAGAAAACCG+AGG | 0.688148 | 3:-90013685 | MsG0380016959.01.T01:CDS |
| TTGACAATGATAAACAACAT+GGG | 0.694598 | 3:-90013055 | MsG0380016959.01.T01:CDS |
| AGGCATTGCCAATTTCGCGG+AGG | 0.700363 | 3:+90012272 | None:intergenic |
| ATACAAGCAGAGATCCAACT+GGG | 0.706369 | 3:+90012367 | None:intergenic |
| GGTATAGTAGGAGAGTCCCA+AGG | 0.710600 | 3:+90012536 | None:intergenic |
| ATTTGTGGGACACAGATGGG+TGG | 0.741545 | 3:-90014605 | MsG0380016959.01.T01:CDS |
| ATATTGAAAGAATATCAACA+AGG | 0.760778 | 3:+90011879 | None:intergenic |
| CTTTCAATATCCCTACCACG+GGG | 0.783983 | 3:+90013662 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATAACAATTTATATTACA+CGG | - | Chr3:90012737-90012756 | MsG0380016959.01.T01:intron | 10.0% |
| !! | AAAATTAAATTTGCAATTGT+TGG | - | Chr3:90014518-90014537 | MsG0380016959.01.T01:CDS | 15.0% |
| !! | AAATTAAATTTGCAATTGTT+GGG | - | Chr3:90014519-90014538 | MsG0380016959.01.T01:CDS | 15.0% |
| !! | AATATAATAGGAACTATAAT+TGG | + | Chr3:90013248-90013267 | None:intergenic | 15.0% |
| !! | AATTATAGTTCCTATTATAT+TGG | - | Chr3:90013247-90013266 | MsG0380016959.01.T01:CDS | 15.0% |
| !! | GTTATAAAAAAACTAAATGT+CGG | + | Chr3:90013824-90013843 | None:intergenic | 15.0% |
| !! | TATGAAATGAAAATAATACA+TGG | + | Chr3:90012718-90012737 | None:intergenic | 15.0% |
| !!! | AAAAGTATAAAACCATAATT+TGG | + | Chr3:90012554-90012573 | None:intergenic | 15.0% |
| !!! | ATGTTTTGATACTTTTTTTT+GGG | - | Chr3:90012526-90012545 | MsG0380016959.01.T01:CDS | 15.0% |
| !!! | TATGTTTTGATACTTTTTTT+TGG | - | Chr3:90012525-90012544 | MsG0380016959.01.T01:CDS | 15.0% |
| !!! | TGGTTTTATACTTTTTTTTA+AGG | - | Chr3:90012559-90012578 | MsG0380016959.01.T01:CDS | 15.0% |
| !! | AAGCACAAAATACAAATTTA+TGG | - | Chr3:90014273-90014292 | MsG0380016959.01.T01:intron | 20.0% |
| !! | AATTAAATTTGCAATTGTTG+GGG | - | Chr3:90014520-90014539 | MsG0380016959.01.T01:CDS | 20.0% |
| !! | ATATTGAAAGAATATCAACA+AGG | + | Chr3:90014694-90014713 | None:intergenic | 20.0% |
| !! | CAATGTTAACATTTATGTAT+CGG | - | Chr3:90013565-90013584 | MsG0380016959.01.T01:CDS | 20.0% |
| !! | TCTCAAAATAGAATAAAGAA+GGG | + | Chr3:90013684-90013703 | None:intergenic | 20.0% |
| !!! | AATTTTCTGTTCAAAAAATC+CGG | + | Chr3:90013967-90013986 | None:intergenic | 20.0% |
| !!! | GATTTTTTGAACAGAAAATT+TGG | - | Chr3:90013967-90013986 | MsG0380016959.01.T01:intron | 20.0% |
| !!! | TCAATATTTGAAGATTTTGA+AGG | + | Chr3:90013771-90013790 | None:intergenic | 20.0% |
| !!! | TGTTTTGATACTTTTTTTTG+GGG | - | Chr3:90012527-90012546 | MsG0380016959.01.T01:CDS | 20.0% |
| ! | AAATAATACTCAAACCTTGT+GGG | + | Chr3:90014563-90014582 | None:intergenic | 25.0% |
| ! | AGAAAAGTTGAAGAAATTTG+TGG | - | Chr3:90011950-90011969 | MsG0380016959.01.T01:three_prime_UTR | 25.0% |
| ! | ATAGCATTGTAGAATCAAAA+GGG | + | Chr3:90013922-90013941 | None:intergenic | 25.0% |
| ! | ATCTTCAAAAGTAACATGTT+TGG | + | Chr3:90013378-90013397 | None:intergenic | 25.0% |
| ! | ATTAAATTTGCAATTGTTGG+GGG | - | Chr3:90014521-90014540 | MsG0380016959.01.T01:CDS | 25.0% |
| ! | ATTGACAATGATAAACAACA+TGG | - | Chr3:90013514-90013533 | MsG0380016959.01.T01:CDS | 25.0% |
| ! | CAACAAAATTCCCATTAAAT+AGG | + | Chr3:90013150-90013169 | None:intergenic | 25.0% |
| ! | CATTTCTCAAGTACAAAATA+AGG | - | Chr3:90013854-90013873 | MsG0380016959.01.T01:intron | 25.0% |
| ! | GAAAAGTTGAAGAAATTTGT+GGG | - | Chr3:90011951-90011970 | MsG0380016959.01.T01:three_prime_UTR | 25.0% |
| ! | GAAATGAAAATAATACATGG+TGG | + | Chr3:90012715-90012734 | None:intergenic | 25.0% |
| ! | GAGAAGAAAACCAATATAAT+AGG | + | Chr3:90013260-90013279 | None:intergenic | 25.0% |
| ! | GTAAGTAACTAATCTAGTTA+TGG | + | Chr3:90012478-90012497 | None:intergenic | 25.0% |
| ! | GTCTCAAAATAGAATAAAGA+AGG | + | Chr3:90013685-90013704 | None:intergenic | 25.0% |
| ! | TTGACAATGATAAACAACAT+GGG | - | Chr3:90013515-90013534 | MsG0380016959.01.T01:CDS | 25.0% |
| !! | GATTGATTAAAAGTATGAAC+AGG | + | Chr3:90013068-90013087 | None:intergenic | 25.0% |
| !! | TATTTGGGTTAAAGAACTTT+GGG | - | Chr3:90014151-90014170 | MsG0380016959.01.T01:intron | 25.0% |
| !! | TTTGTAACAATTTGAGTTTG+AGG | - | Chr3:90013891-90013910 | MsG0380016959.01.T01:intron | 25.0% |
| !! | TTTTTCTACTAGATGTTGTT+TGG | - | Chr3:90012367-90012386 | MsG0380016959.01.T01:CDS | 25.0% |
| !!! | AAGGTTTGATTGTTTTTACA+AGG | + | Chr3:90014675-90014694 | None:intergenic | 25.0% |
| !!! | AGTATCAGAGATCTTTTTTT+TGG | + | Chr3:90013707-90013726 | None:intergenic | 25.0% |
| AAAGTTAAAGAAACCATTGC+TGG | + | Chr3:90013029-90013048 | None:intergenic | 30.0% | |
| AAGCAACTCGTTATTATTTC+CGG | + | Chr3:90014334-90014353 | None:intergenic | 30.0% | |
| AAGTCTCTATCTTGAGTTTA+GGG | - | Chr3:90014486-90014505 | MsG0380016959.01.T01:CDS | 30.0% | |
| ATTCCCAACTTTATGGTAAT+GGG | - | Chr3:90014463-90014482 | MsG0380016959.01.T01:CDS | 30.0% | |
| ATTTACCATTGCTTGTGTTA+AGG | + | Chr3:90013444-90013463 | None:intergenic | 30.0% | |
| CAAATAATACTCAAACCTTG+TGG | + | Chr3:90014564-90014583 | None:intergenic | 30.0% | |
| CATAGCATTGTAGAATCAAA+AGG | + | Chr3:90013923-90013942 | None:intergenic | 30.0% | |
| CTTTCATATTGAATCAAGTG+TGG | - | Chr3:90012424-90012443 | MsG0380016959.01.T01:CDS | 30.0% | |
| GCTAGAGAATATGTTTGATT+TGG | - | Chr3:90013169-90013188 | MsG0380016959.01.T01:CDS | 30.0% | |
| TAACTAATCTAGTTATGGTG+CGG | + | Chr3:90012473-90012492 | None:intergenic | 30.0% | |
| TAGCTTATTGATAAGCAACA+TGG | - | Chr3:90011917-90011936 | MsG0380016959.01.T01:three_prime_UTR | 30.0% | |
| TATGTGATAGCAATAACCAT+GGG | - | Chr3:90014078-90014097 | MsG0380016959.01.T01:intron | 30.0% | |
| TATTCCCAACTTTATGGTAA+TGG | - | Chr3:90014462-90014481 | MsG0380016959.01.T01:CDS | 30.0% | |
| TGAGTTTGATCATTGTTCAA+AGG | - | Chr3:90014427-90014446 | MsG0380016959.01.T01:CDS | 30.0% | |
| TGCTATGATGAAAATCAAAG+AGG | + | Chr3:90013000-90013019 | None:intergenic | 30.0% | |
| TTAAATTTGCAATTGTTGGG+GGG | - | Chr3:90014522-90014541 | MsG0380016959.01.T01:CDS | 30.0% | |
| TTATGTGATAGCAATAACCA+TGG | - | Chr3:90014077-90014096 | MsG0380016959.01.T01:intron | 30.0% | |
| TTATTTCCGGTACCATAATA+AGG | + | Chr3:90014321-90014340 | None:intergenic | 30.0% | |
| ! | AAATTGGCAATGCCTTATTA+TGG | - | Chr3:90014306-90014325 | MsG0380016959.01.T01:intron | 30.0% |
| ! | GTATTTGGGTTAAAGAACTT+TGG | - | Chr3:90014150-90014169 | MsG0380016959.01.T01:intron | 30.0% |
| ! | TTGATTTTCATCATAGCAGT+TGG | - | Chr3:90013002-90013021 | MsG0380016959.01.T01:CDS | 30.0% |
| ! | TTTTACCTTAACACAAGCAA+TGG | - | Chr3:90013436-90013455 | MsG0380016959.01.T01:CDS | 30.0% |
| !! | ATGTTTGTTTCTATCGTCTT+AGG | - | Chr3:90013479-90013498 | MsG0380016959.01.T01:CDS | 30.0% |
| !! | ATTTGTTATTCCTTGACTTG+TGG | - | Chr3:90014369-90014388 | MsG0380016959.01.T01:CDS | 30.0% |
| !!! | AATTTTAGCAGTAGTTTGCT+TGG | - | Chr3:90014392-90014411 | MsG0380016959.01.T01:CDS | 30.0% |
| !!! | AGGTTTTATTCCCAACTTTA+TGG | - | Chr3:90014456-90014475 | MsG0380016959.01.T01:CDS | 30.0% |
| !!! | CAATGGTAAATGCTGATTTT+TGG | - | Chr3:90013453-90013472 | MsG0380016959.01.T01:CDS | 30.0% |
| !!! | CTATGTTTTTTCATCTTGGT+GGG | - | Chr3:90012813-90012832 | MsG0380016959.01.T01:intron | 30.0% |
| !!! | TTTTTTTGGGGACCAAATTA+TGG | - | Chr3:90012539-90012558 | MsG0380016959.01.T01:CDS | 30.0% |
| AAAATCAAAGAGGCTTGATC+AGG | + | Chr3:90012990-90013009 | None:intergenic | 35.0% | |
| AAATCAAAGAGGCTTGATCA+GGG | + | Chr3:90012989-90013008 | None:intergenic | 35.0% | |
| AACCAAACCTATGGTATAGT+AGG | + | Chr3:90014049-90014068 | None:intergenic | 35.0% | |
| ACTTCCCATTACCATAAAGT+TGG | + | Chr3:90014470-90014489 | None:intergenic | 35.0% | |
| AGCTGCAAATTATCAATCTC+TGG | + | Chr3:90012795-90012814 | None:intergenic | 35.0% | |
| AGTCTCTATCTTGAGTTTAG+GGG | - | Chr3:90014487-90014506 | MsG0380016959.01.T01:CDS | 35.0% | |
| ATCAGCATATCCAATTTCCT+AGG | - | Chr3:90013590-90013609 | MsG0380016959.01.T01:CDS | 35.0% | |
| ATGAATCCTGATTCATCAGA+GGG | + | Chr3:90013095-90013114 | None:intergenic | 35.0% | |
| CAAAAAAATGCTCCACATAG+AGG | - | Chr3:90013407-90013426 | MsG0380016959.01.T01:CDS | 35.0% | |
| CATAACCAACAACATTCTGA+AGG | + | Chr3:90012199-90012218 | None:intergenic | 35.0% | |
| CTCTTAGCTGCCTATTTAAT+GGG | - | Chr3:90013137-90013156 | MsG0380016959.01.T01:CDS | 35.0% | |
| CTTCCCATTACCATAAAGTT+GGG | + | Chr3:90014469-90014488 | None:intergenic | 35.0% | |
| GAAGTCTCTATCTTGAGTTT+AGG | - | Chr3:90014485-90014504 | MsG0380016959.01.T01:CDS | 35.0% | |
| GGTCAGATTTGTCAATCTTT+GGG | - | Chr3:90013536-90013555 | MsG0380016959.01.T01:CDS | 35.0% | |
| TAAATTTGCAATTGTTGGGG+GGG | - | Chr3:90014523-90014542 | MsG0380016959.01.T01:CDS | 35.0% | |
| TATCAATAAGCTACCTAGCT+AGG | + | Chr3:90011910-90011929 | None:intergenic | 35.0% | |
| TCACTAATCTCATTGTGCAT+AGG | + | Chr3:90013344-90013363 | None:intergenic | 35.0% | |
| TCATTGTTCAAAGGACTAAG+AGG | - | Chr3:90014436-90014455 | MsG0380016959.01.T01:CDS | 35.0% | |
| TCTCTTAGCTGCCTATTTAA+TGG | - | Chr3:90013136-90013155 | MsG0380016959.01.T01:CDS | 35.0% | |
| TGCTAAAATTCCACAAGTCA+AGG | + | Chr3:90014382-90014401 | None:intergenic | 35.0% | |
| TGCTAATGCAATTGACCAAT+GGG | + | Chr3:90014118-90014137 | None:intergenic | 35.0% | |
| TTAAGTGTGGCTAAGGATTT+GGG | - | Chr3:90012101-90012120 | MsG0380016959.01.T01:CDS | 35.0% | |
| TTCAAAAAATCCGGCAAAGT+TGG | + | Chr3:90013958-90013977 | None:intergenic | 35.0% | |
| ! | ATAGCAATAACCATGGGTTT+TGG | - | Chr3:90014084-90014103 | MsG0380016959.01.T01:intron | 35.0% |
| ! | CTTCAGAATGTTGTTGGTTA+TGG | - | Chr3:90012197-90012216 | MsG0380016959.01.T01:CDS | 35.0% |
| ! | TACTATACCATAGGTTTGGT+TGG | - | Chr3:90014048-90014067 | MsG0380016959.01.T01:intron | 35.0% |
| !! | CAGCAACTTCAGAAGTATTT+GGG | - | Chr3:90014136-90014155 | MsG0380016959.01.T01:intron | 35.0% |
| !! | TAAACCAAAAAGTGCTGATG+AGG | - | Chr3:90013280-90013299 | MsG0380016959.01.T01:CDS | 35.0% |
| !! | TCTTCTCTGAAGTTATAGTG+AGG | - | Chr3:90013630-90013649 | MsG0380016959.01.T01:CDS | 35.0% |
| !! | TTGTTGGTTATGGTCTTGTT+TGG | - | Chr3:90012207-90012226 | MsG0380016959.01.T01:CDS | 35.0% |
| !!! | ATAACCATGGGTTTTGGATA+TGG | - | Chr3:90014090-90014109 | MsG0380016959.01.T01:intron | 35.0% |
| !!! | CTATGTGGAGCATTTTTTTG+CGG | + | Chr3:90013407-90013426 | None:intergenic | 35.0% |
| !!! | GCAGCTATGTTTTTTCATCT+TGG | - | Chr3:90012809-90012828 | MsG0380016959.01.T01:intron | 35.0% |
| !!! | GCTATGTTTTTTCATCTTGG+TGG | - | Chr3:90012812-90012831 | MsG0380016959.01.T01:intron | 35.0% |
| AACTTGTCCAACCAAACCTA+TGG | + | Chr3:90014058-90014077 | None:intergenic | 40.0% | |
| ACAAGTATAACTGCCCAAAC+AGG | + | Chr3:90012170-90012189 | None:intergenic | 40.0% | |
| ACTGTCCATAAAGGCAAAGA+AGG | + | Chr3:90012254-90012273 | None:intergenic | 40.0% | |
| AGAAATTTGTGGGACACAGA+TGG | - | Chr3:90011961-90011980 | MsG0380016959.01.T01:three_prime_UTR | 40.0% | |
| AGCTTTCTTAAGTGTGGCTA+AGG | - | Chr3:90012094-90012113 | MsG0380016959.01.T01:CDS | 40.0% | |
| ATAAGATAAGCAGCCTAGCT+AGG | - | Chr3:90011894-90011913 | MsG0380016959.01.T01:three_prime_UTR | 40.0% | |
| ATACAAGCAGAGATCCAACT+GGG | + | Chr3:90014206-90014225 | None:intergenic | 40.0% | |
| ATACTACAACACAGCAGCAT+TGG | - | Chr3:90012851-90012870 | MsG0380016959.01.T01:intron | 40.0% | |
| ATCTCTGCTTGTATCTGGAT+TGG | - | Chr3:90014212-90014231 | MsG0380016959.01.T01:intron | 40.0% | |
| ATTCAAGCAGTGATGTCCTT+GGG | - | Chr3:90014018-90014037 | MsG0380016959.01.T01:intron | 40.0% | |
| CACACACATACTGTCCATAA+AGG | + | Chr3:90012263-90012282 | None:intergenic | 40.0% | |
| CATGAATCCTGATTCATCAG+AGG | + | Chr3:90013096-90013115 | None:intergenic | 40.0% | |
| CTCCTACTATACCATAGGTT+TGG | - | Chr3:90014044-90014063 | MsG0380016959.01.T01:intron | 40.0% | |
| CTGCTAATGCAATTGACCAA+TGG | + | Chr3:90014119-90014138 | None:intergenic | 40.0% | |
| CTTAAGTGTGGCTAAGGATT+TGG | - | Chr3:90012100-90012119 | MsG0380016959.01.T01:CDS | 40.0% | |
| GAAATTTGTGGGACACAGAT+GGG | - | Chr3:90011962-90011981 | MsG0380016959.01.T01:three_prime_UTR | 40.0% | |
| GCAAGTAGCTTTCTTAAGTG+TGG | - | Chr3:90012088-90012107 | MsG0380016959.01.T01:exon | 40.0% | |
| GGGATATTGAAAGGATTCGT+TGG | - | Chr3:90012918-90012937 | MsG0380016959.01.T01:intron | 40.0% | |
| GGGTCAGATTTGTCAATCTT+TGG | - | Chr3:90013535-90013554 | MsG0380016959.01.T01:CDS | 40.0% | |
| GTAAAATCCTCTCCTCTATG+TGG | + | Chr3:90013422-90013441 | None:intergenic | 40.0% | |
| GTTTGGGCAGTTATACTTGT+TGG | - | Chr3:90012170-90012189 | MsG0380016959.01.T01:CDS | 40.0% | |
| TCCTTTCAATATCCCTACCA+CGG | + | Chr3:90012913-90012932 | None:intergenic | 40.0% | |
| TCTAGTTATGGTGCGGAAAA+AGG | + | Chr3:90012466-90012485 | None:intergenic | 40.0% | |
| TGCAAAATGTTTCACCCACA+AGG | - | Chr3:90014546-90014565 | MsG0380016959.01.T01:CDS | 40.0% | |
| TTCATCTTGGTGGGACAAAA+TGG | - | Chr3:90012822-90012841 | MsG0380016959.01.T01:intron | 40.0% | |
| ! | ATGTGGGATATGTCATTTGC+AGG | - | Chr3:90012002-90012021 | MsG0380016959.01.T01:three_prime_UTR | 40.0% |
| ! | GCAATGCCTTATTATGGTAC+CGG | - | Chr3:90014312-90014331 | MsG0380016959.01.T01:intron | 40.0% |
| ! | GTTTCTATCGTCTTAGGTTG+TGG | - | Chr3:90013485-90013504 | MsG0380016959.01.T01:CDS | 40.0% |
| ! | TGTTCCTCATCAGCACTTTT+TGG | + | Chr3:90013287-90013306 | None:intergenic | 40.0% |
| !! | AAAGGATTCGTTGGCTTAAG+CGG | - | Chr3:90012927-90012946 | MsG0380016959.01.T01:intron | 40.0% |
| !! | ATAAGGCATTGCCAATTTCG+CGG | + | Chr3:90014304-90014323 | None:intergenic | 40.0% |
| !! | GCAGCAACTTCAGAAGTATT+TGG | - | Chr3:90014135-90014154 | MsG0380016959.01.T01:intron | 40.0% |
| !! | GTTTTGGATATGGATCCCAT+TGG | - | Chr3:90014100-90014119 | MsG0380016959.01.T01:intron | 40.0% |
| !! | TTTGGCTTGTTGTAACACAC+AGG | - | Chr3:90012225-90012244 | MsG0380016959.01.T01:CDS | 40.0% |
| AAAATCCGGCAAAGTTGGAG+CGG | + | Chr3:90013953-90013972 | None:intergenic | 45.0% | |
| AAATGCTCCACATAGAGGAG+AGG | - | Chr3:90013412-90013431 | MsG0380016959.01.T01:CDS | 45.0% | |
| AACGAGTTGCTTCTTTGCGA+AGG | - | Chr3:90014342-90014361 | MsG0380016959.01.T01:CDS | 45.0% | |
| AAGGATTTGGGTGACAACGT+TGG | - | Chr3:90012113-90012132 | MsG0380016959.01.T01:CDS | 45.0% | |
| ACCAGTCATAAAGAGCAGCA+TGG | - | Chr3:90012052-90012071 | MsG0380016959.01.T01:three_prime_UTR | 45.0% | |
| AGGTGTAGTTGCTGCAACAA+TGG | + | Chr3:90013324-90013343 | None:intergenic | 45.0% | |
| ATTTGGATACCCGAGACTTG+TGG | - | Chr3:90013984-90014003 | MsG0380016959.01.T01:intron | 45.0% | |
| CAAAGTTTCCCAGAAAACCG+AGG | - | Chr3:90012885-90012904 | MsG0380016959.01.T01:intron | 45.0% | |
| CCAGTCATAAAGAGCAGCAT+GGG | - | Chr3:90012053-90012072 | MsG0380016959.01.T01:three_prime_UTR | 45.0% | |
| CCTTTCAATATCCCTACCAC+GGG | + | Chr3:90012912-90012931 | None:intergenic | 45.0% | |
| CTGGGTTTATCAGCAAAGCT+TGG | - | Chr3:90012144-90012163 | MsG0380016959.01.T01:CDS | 45.0% | |
| CTTACAATTGCTAGCCCAGT+TGG | - | Chr3:90014189-90014208 | MsG0380016959.01.T01:intron | 45.0% | |
| CTTTCAATATCCCTACCACG+GGG | + | Chr3:90012911-90012930 | None:intergenic | 45.0% | |
| GATACAAGCAGAGATCCAAC+TGG | + | Chr3:90014207-90014226 | None:intergenic | 45.0% | |
| GATTCAAGCAGTGATGTCCT+TGG | - | Chr3:90014017-90014036 | MsG0380016959.01.T01:intron | 45.0% | |
| GCAGGAACAGCTTACATGTT+TGG | - | Chr3:90012020-90012039 | MsG0380016959.01.T01:three_prime_UTR | 45.0% | |
| GGACTCTCCTACTATACCAT+AGG | - | Chr3:90014039-90014058 | MsG0380016959.01.T01:intron | 45.0% | |
| GGATCCATATCCAAAACCCA+TGG | + | Chr3:90014097-90014116 | None:intergenic | 45.0% | |
| GGCTTCCTTCTTTGCCTTTA+TGG | - | Chr3:90012246-90012265 | MsG0380016959.01.T01:CDS | 45.0% | |
| GGTGTCCTTCAGAATGTTGT+TGG | - | Chr3:90012191-90012210 | MsG0380016959.01.T01:CDS | 45.0% | |
| GGTGTTTGTGTGTGCAATGT+GGG | - | Chr3:90011986-90012005 | MsG0380016959.01.T01:three_prime_UTR | 45.0% | |
| GTAGTTGCTGCAACAATGGA+TGG | + | Chr3:90013320-90013339 | None:intergenic | 45.0% | |
| GTTGGATCTCTGCTTGTATC+TGG | - | Chr3:90014207-90014226 | MsG0380016959.01.T01:intron | 45.0% | |
| TCTAGACCCTCTGATGAATC+AGG | - | Chr3:90013086-90013105 | MsG0380016959.01.T01:CDS | 45.0% | |
| TGGTGTTTGTGTGTGCAATG+TGG | - | Chr3:90011985-90012004 | MsG0380016959.01.T01:three_prime_UTR | 45.0% | |
| ! | ACAACGTTGGACTTCTAGCT+GGG | - | Chr3:90012126-90012145 | MsG0380016959.01.T01:CDS | 45.0% |
| ! | ATCGTCTTAGGTTGTGGATC+AGG | - | Chr3:90013491-90013510 | MsG0380016959.01.T01:CDS | 45.0% |
| ! | TTCTGGGAAACTTTGCACAC+AGG | + | Chr3:90012880-90012899 | None:intergenic | 45.0% |
| AATTTCCTAGGCCGTGTTGG+TGG | - | Chr3:90013602-90013621 | MsG0380016959.01.T01:CDS | 50.0% | |
| ACCAACACGGCCTAGGAAAT+TGG | + | Chr3:90013603-90013622 | None:intergenic | 50.0% | |
| ATGTTCCGCTCCAACTTTGC+CGG | - | Chr3:90013945-90013964 | MsG0380016959.01.T01:intron | 50.0% | |
| ATTGCCAACGCCACAAGTCT+CGG | + | Chr3:90013997-90014016 | None:intergenic | 50.0% | |
| ATTTGTGGGACACAGATGGG+TGG | - | Chr3:90011965-90011984 | MsG0380016959.01.T01:three_prime_UTR | 50.0% | |
| CAGCAAAGCTTGGCCTGTTT+GGG | - | Chr3:90012154-90012173 | MsG0380016959.01.T01:CDS | 50.0% | |
| CATAGCAGTTGGTCCAGCAA+TGG | - | Chr3:90013013-90013032 | MsG0380016959.01.T01:CDS | 50.0% | |
| CCCATGCTGCTCTTTATGAC+TGG | + | Chr3:90012056-90012075 | None:intergenic | 50.0% | |
| CCCGTGGTAGGGATATTGAA+AGG | - | Chr3:90012909-90012928 | MsG0380016959.01.T01:intron | 50.0% | |
| GACAACGTTGGACTTCTAGC+TGG | - | Chr3:90012125-90012144 | MsG0380016959.01.T01:CDS | 50.0% | |
| GGTATAGTAGGAGAGTCCCA+AGG | + | Chr3:90014037-90014056 | None:intergenic | 50.0% | |
| TCACAGTGAAGTGGGAAGAG+AGG | - | Chr3:90011868-90011887 | MsG0380016959.01.T01:three_prime_UTR | 50.0% | |
| TCAGCAAAGCTTGGCCTGTT+TGG | - | Chr3:90012153-90012172 | MsG0380016959.01.T01:CDS | 50.0% | |
| TCCAATTTCCTAGGCCGTGT+TGG | - | Chr3:90013599-90013618 | MsG0380016959.01.T01:CDS | 50.0% | |
| TCTTGAGTTTAGGGGAGCAG+AGG | - | Chr3:90014495-90014514 | MsG0380016959.01.T01:CDS | 50.0% | |
| TTATGGAGCCTCCGCGAAAT+TGG | - | Chr3:90014290-90014309 | MsG0380016959.01.T01:intron | 50.0% | |
| TTGGCTTAAGCGGCGCAATT+TGG | - | Chr3:90012937-90012956 | MsG0380016959.01.T01:intron | 50.0% | |
| !! | GTAGTTTGCTTGGTTGCAGC+TGG | - | Chr3:90014402-90014421 | MsG0380016959.01.T01:CDS | 50.0% |
| AGAAGAAGCCGCCACCAACA+CGG | + | Chr3:90013616-90013635 | None:intergenic | 55.0% | |
| ATACCCGAGACTTGTGGCGT+TGG | - | Chr3:90013990-90014009 | MsG0380016959.01.T01:intron | 55.0% | |
| TTGCCAACGCCACAAGTCTC+GGG | + | Chr3:90013996-90014015 | None:intergenic | 55.0% | |
| ! | AGGCATTGCCAATTTCGCGG+AGG | + | Chr3:90014301-90014320 | None:intergenic | 55.0% |
| AAAACCGAGGCCCCGTGGTA+GGG | - | Chr3:90012898-90012917 | MsG0380016959.01.T01:intron | 60.0% | |
| ATATCCCTACCACGGGGCCT+CGG | + | Chr3:90012905-90012924 | None:intergenic | 60.0% | |
| ! | TTCCTAGGCCGTGTTGGTGG+CGG | - | Chr3:90013605-90013624 | MsG0380016959.01.T01:CDS | 60.0% |
| GAAAACCGAGGCCCCGTGGT+AGG | - | Chr3:90012897-90012916 | MsG0380016959.01.T01:intron | 65.0% | |
| ! | ACCACGGGGCCTCGGTTTTC+TGG | + | Chr3:90012897-90012916 | None:intergenic | 65.0% |
| ! | CCACGGGGCCTCGGTTTTCT+GGG | + | Chr3:90012896-90012915 | None:intergenic | 65.0% |
| AGCCGCCACCAACACGGCCT+AGG | + | Chr3:90013610-90013629 | None:intergenic | 70.0% | |
| CCCAGAAAACCGAGGCCCCG+TGG | - | Chr3:90012893-90012912 | MsG0380016959.01.T01:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr3 | gene | 90011867 | 90014725 | 90011867 | ID=MsG0380016959.01;Name=MsG0380016959.01 |
| Chr3 | mRNA | 90011867 | 90014725 | 90011867 | ID=MsG0380016959.01.T01;Parent=MsG0380016959.01;Name=MsG0380016959.01.T01;_AED=0.31;_eAED=0.31;_QI=69|1|0.66|1|1|1|3|225|564 |
| Chr3 | exon | 90011867 | 90012611 | 90011867 | ID=MsG0380016959.01.T01:exon:12362;Parent=MsG0380016959.01.T01 |
| Chr3 | exon | 90012941 | 90013779 | 90012941 | ID=MsG0380016959.01.T01:exon:12361;Parent=MsG0380016959.01.T01 |
| Chr3 | exon | 90014321 | 90014725 | 90014321 | ID=MsG0380016959.01.T01:exon:12360;Parent=MsG0380016959.01.T01 |
| Chr3 | five_prime_UTR | 90014657 | 90014725 | 90014657 | ID=MsG0380016959.01.T01:five_prime_utr;Parent=MsG0380016959.01.T01 |
| Chr3 | CDS | 90014321 | 90014656 | 90014321 | ID=MsG0380016959.01.T01:cds;Parent=MsG0380016959.01.T01 |
| Chr3 | CDS | 90012941 | 90013779 | 90012941 | ID=MsG0380016959.01.T01:cds;Parent=MsG0380016959.01.T01 |
| Chr3 | CDS | 90012092 | 90012611 | 90012092 | ID=MsG0380016959.01.T01:cds;Parent=MsG0380016959.01.T01 |
| Chr3 | three_prime_UTR | 90011867 | 90012091 | 90011867 | ID=MsG0380016959.01.T01:three_prime_utr;Parent=MsG0380016959.01.T01 |
| Gene Sequence |
| Protein sequence |
