AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380016976.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380016976.01.T01 MTR_3g098840 94.500 200 8 1 1 200 1 197 3.36e-132 384
MsG0380016976.01.T01 MTR_3g098840 95.570 158 7 0 191 348 269 426 5.98e-102 307
MsG0380016976.01.T01 MTR_6g033315 60.622 193 74 1 4 196 5 195 1.47e-81 255
MsG0380016976.01.T01 MTR_6g033315 34.568 162 89 3 191 335 268 429 1.57e-20 92.4
MsG0380016976.01.T01 MTR_1g098390 59.322 177 71 1 21 196 5 181 2.44e-75 238
MsG0380016976.01.T01 MTR_1g098390 31.373 153 77 4 191 319 255 403 1.66e-12 68.6
MsG0380016976.01.T01 MTR_7g083480 60.209 191 74 1 4 194 5 193 6.32e-75 238
MsG0380016976.01.T01 MTR_7g083480 35.503 169 89 4 191 346 268 429 1.34e-20 92.8
MsG0380016976.01.T01 MTR_6g038020 60.355 169 63 3 32 196 14 182 1.06e-63 208
MsG0380016976.01.T01 MTR_6g038020 32.680 153 75 5 191 319 255 403 1.92e-13 71.2
MsG0380016976.01.T01 MTR_6g038020 60.355 169 63 3 32 196 17 185 1.26e-63 208
MsG0380016976.01.T01 MTR_6g038020 32.680 153 75 5 191 319 258 406 2.07e-13 71.2
MsG0380016976.01.T01 MTR_7g088350 48.454 194 92 2 11 196 15 208 9.23e-57 191
MsG0380016976.01.T01 MTR_7g088350 58.824 51 21 0 187 237 271 321 2.77e-12 67.8
MsG0380016976.01.T01 MTR_7g088360 50.000 182 82 3 21 196 29 207 2.15e-55 186
MsG0380016976.01.T01 MTR_4g116160 37.143 105 53 3 86 189 322 414 1.33e-15 78.2
MsG0380016976.01.T01 MTR_4g116160 37.143 105 53 3 86 189 322 414 1.40e-15 78.2
MsG0380016976.01.T01 MTR_4g116160 37.143 105 53 3 86 189 149 241 2.01e-15 77.4
MsG0380016976.01.T01 MTR_4g023760 33.333 156 76 6 51 193 27 167 3.13e-15 75.5
MsG0380016976.01.T01 MTR_1g094610 32.727 110 52 2 87 196 53 140 2.92e-13 69.7
MsG0380016976.01.T01 MTR_7g118050 38.298 94 48 3 103 194 83 168 5.20e-12 66.2
MsG0380016976.01.T01 MTR_7g118050 38.298 94 48 3 103 194 83 168 8.01e-12 64.3
MsG0380016976.01.T01 MTR_1g112830 34.545 110 53 3 87 196 416 506 1.35e-11 66.2
MsG0380016976.01.T01 MTR_4g021795 31.496 127 63 3 85 205 52 160 1.53e-11 64.7
MsG0380016976.01.T01 MTR_4g092760 32.692 104 59 3 93 196 316 408 4.42e-11 64.3
MsG0380016976.01.T01 MTR_7g114080 34.021 97 42 2 93 189 124 198 6.66e-11 63.5
MsG0380016976.01.T01 MTR_7g114080 34.021 97 42 2 93 189 124 198 7.35e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380016976.01.T01 AT3G26935 58.031 193 78 1 4 196 5 194 1.62e-80 253
MsG0380016976.01.T01 AT3G26935 35.570 149 75 4 191 319 267 414 2.00e-16 80.5
MsG0380016976.01.T01 AT4G24630 62.360 178 65 2 21 196 4 181 7.92e-80 249
MsG0380016976.01.T01 AT3G48760 62.360 178 67 0 19 196 26 203 2.86e-79 250
MsG0380016976.01.T01 AT3G48760 35.393 178 92 6 191 345 276 453 8.41e-19 87.8
MsG0380016976.01.T01 AT5G41060 58.115 191 75 2 6 196 7 192 3.36e-76 240
MsG0380016976.01.T01 AT5G41060 38.235 136 65 4 191 308 265 399 7.67e-17 81.6
MsG0380016976.01.T01 AT5G50020 59.551 178 70 2 21 196 4 181 4.74e-72 230
MsG0380016976.01.T01 AT5G50020 59.551 178 70 2 21 196 34 211 1.06e-71 230
MsG0380016976.01.T01 AT5G41060 60.843 166 63 1 31 196 14 177 7.19e-70 224
MsG0380016976.01.T01 AT5G41060 38.235 136 65 4 191 308 250 384 6.68e-17 81.6
MsG0380016976.01.T01 AT3G56930 43.071 267 104 3 19 237 8 274 8.41e-68 219
MsG0380016976.01.T01 AT5G50020 59.394 165 65 2 21 183 4 168 2.31e-65 212
MsG0380016976.01.T01 AT5G05070 52.174 184 78 4 20 196 36 216 1.60e-56 189
MsG0380016976.01.T01 AT3G56930 47.059 187 93 2 16 196 5 191 1.84e-53 183
MsG0380016976.01.T01 AT3G56930 58.824 51 21 0 187 237 260 310 1.07e-11 66.2
MsG0380016976.01.T01 AT5G41060 61.417 127 47 1 70 196 1 125 2.35e-51 174
MsG0380016976.01.T01 AT5G41060 38.235 136 65 4 191 308 198 332 5.37e-17 81.3
MsG0380016976.01.T01 AT5G41060 61.417 127 47 1 70 196 1 125 2.35e-51 174
MsG0380016976.01.T01 AT5G41060 38.235 136 65 4 191 308 198 332 5.37e-17 81.3
MsG0380016976.01.T01 AT3G56920 46.927 179 91 2 21 196 10 187 6.47e-49 167
MsG0380016976.01.T01 AT2G40990 46.154 182 88 4 21 196 28 205 4.27e-48 167
MsG0380016976.01.T01 AT2G40990 35.849 106 51 2 187 292 271 359 2.94e-11 64.7
MsG0380016976.01.T01 AT3G60800 33.333 129 58 3 77 194 59 170 1.22e-14 73.9
MsG0380016976.01.T01 AT4G00840 32.530 166 88 7 37 194 5 154 1.66e-13 70.5
MsG0380016976.01.T01 AT4G00840 32.530 166 88 7 37 194 5 154 2.05e-13 69.3
MsG0380016976.01.T01 AT4G22750 34.188 117 63 3 83 195 54 160 3.17e-13 69.7
MsG0380016976.01.T01 AT5G20350 32.727 110 63 2 80 189 311 409 4.46e-13 70.9
MsG0380016976.01.T01 AT3G09320 35.484 93 42 2 102 194 66 140 6.99e-12 65.9
MsG0380016976.01.T01 AT3G51390 29.496 139 65 2 86 198 73 204 2.73e-11 64.3
MsG0380016976.01.T01 AT5G04270 35.106 94 39 2 103 196 66 137 3.22e-11 63.5

Find 94 sgRNAs with CRISPR-Local

Find 263 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATGATTCTGTTGGTTCTTT+TGG 0.104120 3:-90242611 None:intergenic
TGCATTTGTGTTTGATCTTC+TGG 0.208638 3:-90239488 None:intergenic
TCACTTCCATCATAATTATC+TGG 0.213227 3:-90241257 None:intergenic
TCAATTAGCCCTTTGTTATA+AGG 0.231915 3:-90242524 None:intergenic
CTTGGAGGGAGGTTTATATT+TGG 0.257102 3:+90239693 MsG0380016976.01.T01:CDS
CGGCTTGTGTTTCATTGTTT+TGG 0.260003 3:+90243046 MsG0380016976.01.T01:three_prime_UTR
GGGAACAAAGCAGCAGAAAA+TGG 0.266208 3:+90242822 MsG0380016976.01.T01:CDS
CGAAGGATCAACGGTATTTC+CGG 0.276497 3:-90239537 None:intergenic
GACAAGTTGCTTCCTTTCTA+AGG 0.282513 3:+90242789 MsG0380016976.01.T01:CDS
CAATTAGCCCTTTGTTATAA+GGG 0.322127 3:-90242523 None:intergenic
ATTCTCAGAGCAACAGTATA+AGG 0.338816 3:-90243259 None:intergenic
TTGTTATGTTCGGATTTGAT+AGG 0.350269 3:+90243017 MsG0380016976.01.T01:three_prime_UTR
GATTATAAAGACGAGGAATA+TGG 0.354047 3:+90242698 MsG0380016976.01.T01:CDS
TCCATTGACAATTACTTCCT+TGG 0.361235 3:-90241324 None:intergenic
AAAGCACAGAAAACAGCAAC+AGG 0.373823 3:-90239762 None:intergenic
AGTGATACATCTGTGGATTT+AGG 0.375920 3:+90242737 MsG0380016976.01.T01:CDS
CTTTCTAAGGCAGTCCTTGT+GGG 0.391361 3:+90242802 MsG0380016976.01.T01:CDS
TGTTATAAGGGTTGACTTGT+CGG 0.392823 3:-90242511 None:intergenic
CATTGTAAACTGGCATCATA+AGG 0.394852 3:-90242655 None:intergenic
TGCTCTGAGAATATAATTGC+CGG 0.400359 3:+90243270 MsG0380016976.01.T01:three_prime_UTR
ATTGAATATCCAGAGTGATT+AGG 0.410341 3:-90239813 None:intergenic
GGGGCAGAGTTTGTTATGTT+CGG 0.427660 3:+90243007 MsG0380016976.01.T01:three_prime_UTR
TCATCAGCCTCATTGTAAAC+TGG 0.432467 3:-90242665 None:intergenic
GTAAATATAGATTTCACATC+AGG 0.435683 3:-90239717 None:intergenic
AAAACAATGCCGACGTCAAA+TGG 0.448013 3:-90243295 None:intergenic
CCATGGGTTGGTCAGTGTAT+TGG 0.450019 3:+90241455 MsG0380016976.01.T01:CDS
GGAACAAAGCAGCAGAAAAT+GGG 0.455188 3:+90242823 MsG0380016976.01.T01:CDS
GCTACTGAGTTCGCCGGCGC+CGG 0.464541 3:-90239515 None:intergenic
GCAGTATGCTTCACACAGAA+AGG 0.468722 3:+90242759 MsG0380016976.01.T01:CDS
TACTGAGCAATGAGAGCAGC+GGG 0.473275 3:-90241396 None:intergenic
CTGACCTCAGGAAGAGATCC+TGG 0.475106 3:+90241203 MsG0380016976.01.T01:CDS
CACTTCCATCATAATTATCT+GGG 0.480034 3:-90241256 None:intergenic
CAGTATGCTTCACACAGAAA+GGG 0.481949 3:+90242760 MsG0380016976.01.T01:CDS
CTTTGTCTAGATGATTCTGT+TGG 0.483481 3:-90242620 None:intergenic
CCTTTCTAAGGCAGTCCTTG+TGG 0.491773 3:+90242801 MsG0380016976.01.T01:CDS
GGTTGACTTGTCGGTCATAC+CGG 0.492971 3:-90242502 None:intergenic
TCCAAGGAAGTAATTGTCAA+TGG 0.493913 3:+90241323 MsG0380016976.01.T01:CDS
CCACTCCCAGATAATTATGA+TGG 0.500454 3:+90241251 MsG0380016976.01.T01:CDS
GAATTGCGAGGCACTATGCC+AGG 0.501439 3:-90241221 None:intergenic
AGCACAGAAAACAGCAACAG+GGG 0.504125 3:-90239760 None:intergenic
AAGATGATGAATAGAAATTG+TGG 0.507076 3:+90243178 MsG0380016976.01.T01:three_prime_UTR
TGTTATGTTCGGATTTGATA+GGG 0.515498 3:+90243018 MsG0380016976.01.T01:three_prime_UTR
ACAAATGCATCCTCCGGCGC+CGG 0.518692 3:+90239502 MsG0380016976.01.T01:exon
AAGCGGATCACCAGTGATAG+TGG 0.528062 3:+90242893 MsG0380016976.01.T01:CDS
ATTTCCTTTCCAAGCGCGAT+AGG 0.533436 3:-90239570 None:intergenic
CCACAAGGACTGCCTTAGAA+AGG 0.535328 3:-90242801 None:intergenic
GATTTGATCATCACTGCCCA+TGG 0.538217 3:+90241438 MsG0380016976.01.T01:CDS
TCATCAGAACCTATCGCGCT+TGG 0.540838 3:+90239561 MsG0380016976.01.T01:CDS
AAGTCAACCCTTATAACAAA+GGG 0.541030 3:+90242516 MsG0380016976.01.T01:CDS
ATTGTAAACTGGCATCATAA+GGG 0.543614 3:-90242654 None:intergenic
AAGCACAGAAAACAGCAACA+GGG 0.545403 3:-90239761 None:intergenic
TCAAACACAAATGCATCCTC+CGG 0.547234 3:+90239496 MsG0380016976.01.T01:exon
TTTCCGGCTACTGAGTTCGC+CGG 0.553399 3:-90239521 None:intergenic
AGAACCTATCGCGCTTGGAA+AGG 0.560307 3:+90239566 MsG0380016976.01.T01:CDS
GATCATCACTGCCCATGGGT+TGG 0.560369 3:+90241443 MsG0380016976.01.T01:CDS
ACTGAGTTCGCCGGCGCCGG+AGG 0.561048 3:-90239512 None:intergenic
ATTGCTCTTATACTGACCTC+AGG 0.563603 3:+90241191 MsG0380016976.01.T01:CDS
CCATCATAATTATCTGGGAG+TGG 0.563784 3:-90241251 None:intergenic
AGGTTCATTACCACTATCAC+TGG 0.565407 3:-90242903 None:intergenic
ACCACATTTACCACGATCCA+AGG 0.572679 3:+90241307 MsG0380016976.01.T01:CDS
TCGGATTTGATAGGGAAGTA+CGG 0.574055 3:+90243026 MsG0380016976.01.T01:three_prime_UTR
ATGCCGACGTCAAATGGTGC+CGG 0.574249 3:-90243289 None:intergenic
ACAATTACTTCCTTGGATCG+TGG 0.582722 3:-90241317 None:intergenic
TCTGCTGCTTTGTTCCCACA+AGG 0.583203 3:-90242816 None:intergenic
CCAATACACTGACCAACCCA+TGG 0.583973 3:-90241455 None:intergenic
GCGCCGGCGAACTCAGTAGC+CGG 0.585327 3:+90239518 MsG0380016976.01.T01:CDS
TTACAATGAGGCTGATGAGG+TGG 0.589928 3:+90242670 MsG0380016976.01.T01:CDS
ACAGAATCATCTAGACAAAG+AGG 0.591209 3:+90242623 MsG0380016976.01.T01:CDS
CAAGTCAACCCTTATAACAA+AGG 0.591481 3:+90242515 MsG0380016976.01.T01:CDS
GATCGTGGTAAATGTGGTGG+TGG 0.591714 3:-90241302 None:intergenic
ATTTGATCATCACTGCCCAT+GGG 0.600506 3:+90241439 MsG0380016976.01.T01:CDS
TCTGATGAGCGAAGGATCAA+CGG 0.601917 3:-90239546 None:intergenic
AGTATGCTTCACACAGAAAG+GGG 0.616574 3:+90242761 MsG0380016976.01.T01:CDS
AAGTAAATGAACATAATGGA+AGG 0.617930 3:-90243209 None:intergenic
CGATAGGTTCTGATGAGCGA+AGG 0.621597 3:-90239554 None:intergenic
TCCTTGGATCGTGGTAAATG+TGG 0.622600 3:-90241308 None:intergenic
GGTTGGTCAGTGTATTGGAC+TGG 0.624376 3:+90241460 MsG0380016976.01.T01:CDS
TGATTTAAGTGATACATCTG+TGG 0.629494 3:+90242730 MsG0380016976.01.T01:CDS
TCATAATTATCTGGGAGTGG+AGG 0.634751 3:-90241248 None:intergenic
AGTTTACAATGAGGCTGATG+AGG 0.639849 3:+90242667 MsG0380016976.01.T01:CDS
TATGATGCCAGTTTACAATG+AGG 0.640744 3:+90242658 MsG0380016976.01.T01:CDS
AGCTTCTGATGTTCTTGACG+AGG 0.657463 3:+90242850 MsG0380016976.01.T01:CDS
TTGGATCGTGGTAAATGTGG+TGG 0.667113 3:-90241305 None:intergenic
CAATACACTGACCAACCCAT+GGG 0.670201 3:-90241454 None:intergenic
ATACTGAGCAATGAGAGCAG+CGG 0.679203 3:-90241397 None:intergenic
AGTGATAGTGGTAATGAACC+TGG 0.679603 3:+90242905 MsG0380016976.01.T01:CDS
TATGCCAGGATCTCTTCCTG+AGG 0.701986 3:-90241207 None:intergenic
AGTGGAGGATAAGAATTGCG+AGG 0.702045 3:-90241233 None:intergenic
TTGCCGGCACCATTTGACGT+CGG 0.703566 3:+90243286 MsG0380016976.01.T01:three_prime_UTR
GAGCAATGAGAGCAGCGGGG+AGG 0.704186 3:-90241392 None:intergenic
CTCAGTATGTGATAACTGTG+TGG 0.713980 3:+90241412 MsG0380016976.01.T01:CDS
ACGAAGACGACGAATCAAAG+CGG 0.721141 3:+90242876 MsG0380016976.01.T01:CDS
ACTGAGCAATGAGAGCAGCG+GGG 0.779041 3:-90241395 None:intergenic
GATAGTGGTAATGAACCTGG+TGG 0.817967 3:+90242908 MsG0380016976.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTAATCCTTATATAATTA+AGG - Chr3:90239609-90239628 None:intergenic 10.0%
!! TTAAAATTACAAAGAAAAAT+AGG + Chr3:90242981-90243000 MsG0380016976.01.T01:three_prime_UTR 10.0%
!! AAAAAAGTAAATGAACATAA+TGG - Chr3:90243216-90243235 None:intergenic 15.0%
!! AGTTAAACCTTAATTATATA+AGG + Chr3:90239599-90239618 MsG0380016976.01.T01:intron 15.0%
!! ATATTATTCCATTTCTAATT+AGG - Chr3:90241883-90241902 None:intergenic 15.0%
!!! CTTCAAAAATTTTATACAAT+CGG + Chr3:90240139-90240158 MsG0380016976.01.T01:intron 15.0%
!!! TTGTATAAAATTTTTGAAGT+AGG - Chr3:90240138-90240157 None:intergenic 15.0%
!!! TTTGTAATGAAATATTTTCT+TGG + Chr3:90240927-90240946 MsG0380016976.01.T01:intron 15.0%
!!! TTTTTTTTTTAGTTATTCTG+TGG + Chr3:90243113-90243132 MsG0380016976.01.T01:three_prime_UTR 15.0%
!! AAACTATAAGAGAAACTATT+TGG + Chr3:90240644-90240663 MsG0380016976.01.T01:intron 20.0%
!! AAACTTCTTCTATTCTAAAT+AGG - Chr3:90240219-90240238 None:intergenic 20.0%
!! AAATTACAAAGAAAAATAGG+TGG + Chr3:90242984-90243003 MsG0380016976.01.T01:three_prime_UTR 20.0%
!! AATTACAAAGAAAAATAGGT+GGG + Chr3:90242985-90243004 MsG0380016976.01.T01:three_prime_UTR 20.0%
!! ACAAAAACAAAAGAAATGAA+GGG - Chr3:90243239-90243258 None:intergenic 20.0%
!! AGATTTAGATATTAATGAGT+TGG + Chr3:90240669-90240688 MsG0380016976.01.T01:intron 20.0%
!! ATTAAAATGATAGCACAAAT+TGG - Chr3:90241526-90241545 None:intergenic 20.0%
!! CTAGATATAAATAAGATTTC+TGG + Chr3:90240310-90240329 MsG0380016976.01.T01:intron 20.0%
!! TGAATAAAAATGACTTACAA+AGG - Chr3:90239865-90239884 None:intergenic 20.0%
!!! CATATGAAAATTTTAGATAC+CGG + Chr3:90242483-90242502 MsG0380016976.01.T01:CDS 20.0%
!!! GAATTTTTCTGAAATTATAG+AGG - Chr3:90242950-90242969 None:intergenic 20.0%
!!! TGATATAGTTCTTTTAAAAG+TGG + Chr3:90243136-90243155 MsG0380016976.01.T01:three_prime_UTR 20.0%
!!! TGTATAGCTAGATATTATTT+TGG + Chr3:90240272-90240291 MsG0380016976.01.T01:intron 20.0%
!!! TTTTTTTTACCTGATTACTA+TGG - Chr3:90240846-90240865 None:intergenic 20.0%
! AAGATGATGAATAGAAATTG+TGG + Chr3:90243178-90243197 MsG0380016976.01.T01:three_prime_UTR 25.0%
! AATAGAAGAAGTTTAGCATT+TGG + Chr3:90240225-90240244 MsG0380016976.01.T01:intron 25.0%
! ACAAAAGGAACAATCATTAA+CGG - Chr3:90242448-90242467 None:intergenic 25.0%
! AGTTATTCTTAACTCATCAT+GGG + Chr3:90240098-90240117 MsG0380016976.01.T01:intron 25.0%
! ATAGTAAGTAGTCTCATTTA+AGG - Chr3:90242379-90242398 None:intergenic 25.0%
! ATGACAACATTTAAGAATCT+TGG - Chr3:90240355-90240374 None:intergenic 25.0%
! ATGAGTTAAGAATAACTAAC+AGG - Chr3:90240095-90240114 None:intergenic 25.0%
! ATTACAAAGAAAAATAGGTG+GGG + Chr3:90242986-90243005 MsG0380016976.01.T01:three_prime_UTR 25.0%
! ATTTACCTCCTAATTAGAAA+TGG + Chr3:90241872-90241891 MsG0380016976.01.T01:intron 25.0%
! CTATATAGTAGAAAAGATAG+TGG + Chr3:90240507-90240526 MsG0380016976.01.T01:intron 25.0%
! GACAAAAACAAAAGAAATGA+AGG - Chr3:90243240-90243259 None:intergenic 25.0%
! GTAAATATAGATTTCACATC+AGG - Chr3:90239720-90239739 None:intergenic 25.0%
! TAGTTATTCTTAACTCATCA+TGG + Chr3:90240097-90240116 MsG0380016976.01.T01:intron 25.0%
! TATATCTAGCTAAGTATACT+TGG - Chr3:90240299-90240318 None:intergenic 25.0%
! TGTGTATATTATTAGTGCAA+TGG - Chr3:90242258-90242277 None:intergenic 25.0%
! TTAGCATTTGGACAAATTTA+TGG + Chr3:90240237-90240256 MsG0380016976.01.T01:intron 25.0%
! TTATTCCATTTCTAATTAGG+AGG - Chr3:90241880-90241899 None:intergenic 25.0%
! TTCATAACTTGAATCCATTA+GGG + Chr3:90240033-90240052 MsG0380016976.01.T01:intron 25.0%
!! AAGTAAATGAACATAATGGA+AGG - Chr3:90243212-90243231 None:intergenic 25.0%
!! CACTATCTTTTCTACTATAT+AGG - Chr3:90240509-90240528 None:intergenic 25.0%
!! GTTTCTCTTATAGTTTTCAT+AGG - Chr3:90240640-90240659 None:intergenic 25.0%
!! TATTGTTGTTGTAAACTCTA+TGG + Chr3:90240751-90240770 MsG0380016976.01.T01:intron 25.0%
!! TGAAATATTTTCTTGGTGAA+TGG + Chr3:90240934-90240953 MsG0380016976.01.T01:intron 25.0%
!! TTGTTTCTTTGCATGTATAT+TGG + Chr3:90241921-90241940 MsG0380016976.01.T01:intron 25.0%
!!! AATGCTACTTTTTCTTTTTC+AGG + Chr3:90239662-90239681 MsG0380016976.01.T01:intron 25.0%
!!! CTGAAATTGTTTTTGGATAT+GGG - Chr3:90242581-90242600 None:intergenic 25.0%
!!! TAGAAAAGATAGTGGAAAAT+AGG + Chr3:90240515-90240534 MsG0380016976.01.T01:intron 25.0%
!!! TCATTGTTTTGGTCAAAAAA+TGG + Chr3:90243057-90243076 MsG0380016976.01.T01:three_prime_UTR 25.0%
AAACAAACATGTAGTAGAAC+CGG - Chr3:90242121-90242140 None:intergenic 30.0%
AAGTCAACCCTTATAACAAA+GGG + Chr3:90242516-90242535 MsG0380016976.01.T01:CDS 30.0%
AATTGACAGCTTAGTCAATA+AGG - Chr3:90241832-90241851 None:intergenic 30.0%
AGTTAGATTACAAGAGATAG+AGG + Chr3:90240610-90240629 MsG0380016976.01.T01:intron 30.0%
ATTGAATATCCAGAGTGATT+AGG - Chr3:90239816-90239835 None:intergenic 30.0%
ATTGACAGCTTAGTCAATAA+GGG - Chr3:90241831-90241850 None:intergenic 30.0%
ATTGTAAACTGGCATCATAA+GGG - Chr3:90242657-90242676 None:intergenic 30.0%
CACTTCCATCATAATTATCT+GGG - Chr3:90241259-90241278 None:intergenic 30.0%
CCATATCCAAAAACAATTTC+AGG + Chr3:90242579-90242598 MsG0380016976.01.T01:CDS 30.0%
CTCTTTGCTTTATATGTACA+CGG + Chr3:90242081-90242100 MsG0380016976.01.T01:intron 30.0%
CTTCATAACTTGAATCCATT+AGG + Chr3:90240032-90240051 MsG0380016976.01.T01:intron 30.0%
GATTATAAAGACGAGGAATA+TGG + Chr3:90242698-90242717 MsG0380016976.01.T01:CDS 30.0%
GGAAAAAGATTATAAAGACG+AGG + Chr3:90242691-90242710 MsG0380016976.01.T01:CDS 30.0%
GTAAGAAAAACGAACTAGAA+AGG - Chr3:90242423-90242442 None:intergenic 30.0%
GTCAATTTACTGTGATCAAA+TGG + Chr3:90241845-90241864 MsG0380016976.01.T01:intron 30.0%
TACGCATCATAAACCATATT+TGG - Chr3:90240697-90240716 None:intergenic 30.0%
TATTATTGTTGTCGATGTGT+CGG + Chr3:90239990-90240009 MsG0380016976.01.T01:intron 30.0%
TCACTTCCATCATAATTATC+TGG - Chr3:90241260-90241279 None:intergenic 30.0%
TCCACTAAAATTGTTTGTTC+AGG - Chr3:90241614-90241633 None:intergenic 30.0%
TGATAACTGATAAGACTAGA+CGG + Chr3:90240400-90240419 MsG0380016976.01.T01:intron 30.0%
TGATTTAAGTGATACATCTG+TGG + Chr3:90242730-90242749 MsG0380016976.01.T01:CDS 30.0%
TGTTATGTTCGGATTTGATA+GGG + Chr3:90243018-90243037 MsG0380016976.01.T01:three_prime_UTR 30.0%
TTACAAAGAAAAATAGGTGG+GGG + Chr3:90242987-90243006 MsG0380016976.01.T01:three_prime_UTR 30.0%
TTGTTATGTTCGGATTTGAT+AGG + Chr3:90243017-90243036 MsG0380016976.01.T01:three_prime_UTR 30.0%
! AGCTATATCCAACTTTTAGA+GGG + Chr3:90240994-90241013 MsG0380016976.01.T01:intron 30.0%
! ATACAATCGGTTAGTTGAAA+AGG + Chr3:90240152-90240171 MsG0380016976.01.T01:intron 30.0%
! CAATTAGCCCTTTGTTATAA+GGG - Chr3:90242526-90242545 None:intergenic 30.0%
! CATAATTACCCTCTAAAAGT+TGG - Chr3:90241005-90241024 None:intergenic 30.0%
! TAACGTGTTTAGGATTAAAG+TGG - Chr3:90241152-90241171 None:intergenic 30.0%
! TAATGAGTTGGATCCAAATA+TGG + Chr3:90240681-90240700 MsG0380016976.01.T01:intron 30.0%
! TAGCTATATCCAACTTTTAG+AGG + Chr3:90240993-90241012 MsG0380016976.01.T01:intron 30.0%
! TCAATTAGCCCTTTGTTATA+AGG - Chr3:90242527-90242546 None:intergenic 30.0%
! TCCTGAACAAACAATTTTAG+TGG + Chr3:90241610-90241629 MsG0380016976.01.T01:intron 30.0%
! TTTTGGTCAAAAAATGGCAT+TGG + Chr3:90243063-90243082 MsG0380016976.01.T01:three_prime_UTR 30.0%
!! TTGTGCTGATTAGATATGTA+TGG - Chr3:90242319-90242338 None:intergenic 30.0%
!!! ATTGTTTTTGGATATGGGAA+TGG - Chr3:90242576-90242595 None:intergenic 30.0%
!!! CCTGAAATTGTTTTTGGATA+TGG - Chr3:90242582-90242601 None:intergenic 30.0%
!!! CTTTTTCAGGTGTTTTTTCT+TGG + Chr3:90239675-90239694 MsG0380016976.01.T01:intron 30.0%
AAAATAGGCTTAGGTGGTTT+GGG + Chr3:90240530-90240549 MsG0380016976.01.T01:intron 35.0%
AAAATGAAGCGAAATGTGTC+AGG + Chr3:90240814-90240833 MsG0380016976.01.T01:intron 35.0%
AACATTGACCAAGTTGTCAA+AGG + Chr3:90241633-90241652 MsG0380016976.01.T01:intron 35.0%
ACAGAATCATCTAGACAAAG+AGG + Chr3:90242623-90242642 MsG0380016976.01.T01:CDS 35.0%
ACATTGACCAAGTTGTCAAA+GGG + Chr3:90241634-90241653 MsG0380016976.01.T01:intron 35.0%
AGTAAGAAGAGTAGATCAGA+TGG + Chr3:90240582-90240601 MsG0380016976.01.T01:intron 35.0%
AGTGATACATCTGTGGATTT+AGG + Chr3:90242737-90242756 MsG0380016976.01.T01:CDS 35.0%
AGTTAAGTAGTGTTCAAACC+TGG - Chr3:90242343-90242362 None:intergenic 35.0%
AGTTGAGATAACTTCTTGCA+TGG - Chr3:90240894-90240913 None:intergenic 35.0%
ATAATTCAATGTGTCAGCGT+CGG - Chr3:90239954-90239973 None:intergenic 35.0%
ATATCTAATCAGCACAAACC+AGG + Chr3:90242322-90242341 MsG0380016976.01.T01:intron 35.0%
ATGAACATAAAGGCAAAGCA+GGG - Chr3:90242153-90242172 None:intergenic 35.0%
ATTATTAGTGCAATGGAAGC+AGG - Chr3:90242251-90242270 None:intergenic 35.0%
ATTCTCAGAGCAACAGTATA+AGG - Chr3:90243262-90243281 None:intergenic 35.0%
CAAGTCAACCCTTATAACAA+AGG + Chr3:90242515-90242534 MsG0380016976.01.T01:CDS 35.0%
CATTGTAAACTGGCATCATA+AGG - Chr3:90242658-90242677 None:intergenic 35.0%
CGTGTACATATAAAGCAAAG+AGG - Chr3:90242083-90242102 None:intergenic 35.0%
CTTTGTCTAGATGATTCTGT+TGG - Chr3:90242623-90242642 None:intergenic 35.0%
GATAACTGATAAGACTAGAC+GGG + Chr3:90240401-90240420 MsG0380016976.01.T01:intron 35.0%
GCAATACATGTAACGTGTTT+AGG - Chr3:90241162-90241181 None:intergenic 35.0%
GGACTACTTGTGTTAAGAAA+TGG + Chr3:90240772-90240791 MsG0380016976.01.T01:intron 35.0%
GTTAAGAATAACTAACAGGC+AGG - Chr3:90240091-90240110 None:intergenic 35.0%
GTTGTTGTCATGTGATTGAA+AGG + Chr3:90241678-90241697 MsG0380016976.01.T01:intron 35.0%
TACAAAGAAAAATAGGTGGG+GGG + Chr3:90242988-90243007 MsG0380016976.01.T01:three_prime_UTR 35.0%
TAGACTGCACATAGAACAAA+AGG - Chr3:90242463-90242482 None:intergenic 35.0%
TATACACATTCATTGCTGTC+TGG + Chr3:90242270-90242289 MsG0380016976.01.T01:intron 35.0%
TATGATGCCAGTTTACAATG+AGG + Chr3:90242658-90242677 MsG0380016976.01.T01:CDS 35.0%
TCCAAGGAAGTAATTGTCAA+TGG + Chr3:90241323-90241342 MsG0380016976.01.T01:CDS 35.0%
TCCATTGACAATTACTTCCT+TGG - Chr3:90241327-90241346 None:intergenic 35.0%
TGCATTTGTGTTTGATCTTC+TGG - Chr3:90239491-90239510 None:intergenic 35.0%
TGTGTTAAGAAATGGAGCTA+GGG + Chr3:90240780-90240799 MsG0380016976.01.T01:intron 35.0%
TTATTAGTGCAATGGAAGCA+GGG - Chr3:90242250-90242269 None:intergenic 35.0%
TTGTGTTAAGAAATGGAGCT+AGG + Chr3:90240779-90240798 MsG0380016976.01.T01:intron 35.0%
! AGATTTCTGGATATTGCTTG+TGG + Chr3:90240323-90240342 MsG0380016976.01.T01:intron 35.0%
! AGCAAAAGGCATGAACATAA+AGG - Chr3:90242163-90242182 None:intergenic 35.0%
! AGTAGTCTCATTTAAGGTCA+AGG - Chr3:90242373-90242392 None:intergenic 35.0%
! ATTAGGGTAGTGCTTTAAGT+AGG + Chr3:90240049-90240068 MsG0380016976.01.T01:intron 35.0%
! CAAAAACAATTTCAGGTCCA+AGG + Chr3:90242586-90242605 MsG0380016976.01.T01:CDS 35.0%
! CTTGGACCTGAAATTGTTTT+TGG - Chr3:90242588-90242607 None:intergenic 35.0%
! GATGATTTTCCTAATCACTC+TGG + Chr3:90239804-90239823 MsG0380016976.01.T01:CDS 35.0%
! GTAGTCTCATTTAAGGTCAA+GGG - Chr3:90242372-90242391 None:intergenic 35.0%
! TACTTAAAGCACTACCCTAA+TGG - Chr3:90240050-90240069 None:intergenic 35.0%
! TGGATTCAAGTTATGAAGCA+CGG - Chr3:90240030-90240049 None:intergenic 35.0%
! TTATGTTCATGCCTTTTGCT+GGG + Chr3:90242163-90242182 MsG0380016976.01.T01:intron 35.0%
! TTTATGTTCATGCCTTTTGC+TGG + Chr3:90242162-90242181 MsG0380016976.01.T01:intron 35.0%
!! AGATAGTGGAAAATAGGCTT+AGG + Chr3:90240521-90240540 MsG0380016976.01.T01:intron 35.0%
!! AGGTTTTGACCATAGTAATC+AGG + Chr3:90240834-90240853 MsG0380016976.01.T01:intron 35.0%
!! TGCTCTGAGAATATAATTGC+CGG + Chr3:90243270-90243289 MsG0380016976.01.T01:three_prime_UTR 35.0%
!! TGTTATAAGGGTTGACTTGT+CGG - Chr3:90242514-90242533 None:intergenic 35.0%
!!! CTTACCCTGTTTTTTTACAC+AGG - Chr3:90241732-90241751 None:intergenic 35.0%
!!! GATGATTCTGTTGGTTCTTT+TGG - Chr3:90242614-90242633 None:intergenic 35.0%
!!! TTCAGGTGTTTTTTCTTGGA+GGG + Chr3:90239679-90239698 MsG0380016976.01.T01:intron 35.0%
!!! TTTCAGGTGTTTTTTCTTGG+AGG + Chr3:90239678-90239697 MsG0380016976.01.T01:intron 35.0%
AAAACAATGCCGACGTCAAA+TGG - Chr3:90243298-90243317 None:intergenic 40.0%
AAAGCACAGAAAACAGCAAC+AGG - Chr3:90239765-90239784 None:intergenic 40.0%
AACAACAATATCCCACCAAG+TGG - Chr3:90240741-90240760 None:intergenic 40.0%
AACACGTTACATGTATTGCC+AGG + Chr3:90241163-90241182 MsG0380016976.01.T01:intron 40.0%
AAGAAGAGTAGATCAGATGG+AGG + Chr3:90240585-90240604 MsG0380016976.01.T01:intron 40.0%
AAGCACAGAAAACAGCAACA+GGG - Chr3:90239764-90239783 None:intergenic 40.0%
ACAACAATATCCCACCAAGT+GGG - Chr3:90240740-90240759 None:intergenic 40.0%
ACAATTACTTCCTTGGATCG+TGG - Chr3:90241320-90241339 None:intergenic 40.0%
AGCCTCCTGTGTAAAAAAAC+AGG + Chr3:90241724-90241743 MsG0380016976.01.T01:intron 40.0%
AGGTTCATTACCACTATCAC+TGG - Chr3:90242906-90242925 None:intergenic 40.0%
AGTATGCTTCACACAGAAAG+GGG + Chr3:90242761-90242780 MsG0380016976.01.T01:CDS 40.0%
AGTTTACAATGAGGCTGATG+AGG + Chr3:90242667-90242686 MsG0380016976.01.T01:CDS 40.0%
ATAACTAACAGGCAGGTCAT+AGG - Chr3:90240084-90240103 None:intergenic 40.0%
ATTGCTCTTATACTGACCTC+AGG + Chr3:90241191-90241210 MsG0380016976.01.T01:CDS 40.0%
ATTTGATCATCACTGCCCAT+GGG + Chr3:90241439-90241458 MsG0380016976.01.T01:CDS 40.0%
CAGTATGCTTCACACAGAAA+GGG + Chr3:90242760-90242779 MsG0380016976.01.T01:CDS 40.0%
CATGAACATAAAGGCAAAGC+AGG - Chr3:90242154-90242173 None:intergenic 40.0%
CATGATGTAAACCCAGCAAA+AGG - Chr3:90242177-90242196 None:intergenic 40.0%
CATTGACCAAGTTGTCAAAG+GGG + Chr3:90241635-90241654 MsG0380016976.01.T01:intron 40.0%
CCACTCCCAGATAATTATGA+TGG + Chr3:90241251-90241270 MsG0380016976.01.T01:CDS 40.0%
CCATCATAATTATCTGGGAG+TGG - Chr3:90241254-90241273 None:intergenic 40.0%
CGTAATTTGATCCATGTAGC+CGG + Chr3:90240713-90240732 MsG0380016976.01.T01:intron 40.0%
CTCAGTATGTGATAACTGTG+TGG + Chr3:90241412-90241431 MsG0380016976.01.T01:CDS 40.0%
CTGCGTACAATACACCAAAA+TGG + Chr3:90241753-90241772 MsG0380016976.01.T01:intron 40.0%
CTTGGAGGGAGGTTTATATT+TGG + Chr3:90239693-90239712 MsG0380016976.01.T01:CDS 40.0%
GAAAATAGGCTTAGGTGGTT+TGG + Chr3:90240529-90240548 MsG0380016976.01.T01:intron 40.0%
GACAAGTTGCTTCCTTTCTA+AGG + Chr3:90242789-90242808 MsG0380016976.01.T01:CDS 40.0%
GACCAATGAGTGTGATGTTT+GGG - Chr3:90241963-90241982 None:intergenic 40.0%
GCCTCCTGTGTAAAAAAACA+GGG + Chr3:90241725-90241744 MsG0380016976.01.T01:intron 40.0%
GGAACAAAGCAGCAGAAAAT+GGG + Chr3:90242823-90242842 MsG0380016976.01.T01:CDS 40.0%
GTATAAGAGCAATCAGAACC+TGG - Chr3:90241184-90241203 None:intergenic 40.0%
TAGTGGAAAATAGGCTTAGG+TGG + Chr3:90240524-90240543 MsG0380016976.01.T01:intron 40.0%
TATTAGTGCAATGGAAGCAG+GGG - Chr3:90242249-90242268 None:intergenic 40.0%
TCAAACACAAATGCATCCTC+CGG + Chr3:90239496-90239515 MsG0380016976.01.T01:exon 40.0%
TCATAATTATCTGGGAGTGG+AGG - Chr3:90241251-90241270 None:intergenic 40.0%
TCATCAGCCTCATTGTAAAC+TGG - Chr3:90242668-90242687 None:intergenic 40.0%
TCGGATTTGATAGGGAAGTA+CGG + Chr3:90243026-90243045 MsG0380016976.01.T01:three_prime_UTR 40.0%
TGACCAATGAGTGTGATGTT+TGG - Chr3:90241964-90241983 None:intergenic 40.0%
TTCCCAAACATCACACTCAT+TGG + Chr3:90241958-90241977 MsG0380016976.01.T01:intron 40.0%
TTTGCTGGGTTTACATCATG+AGG + Chr3:90242177-90242196 MsG0380016976.01.T01:intron 40.0%
! CGGCTTGTGTTTCATTGTTT+TGG + Chr3:90243046-90243065 MsG0380016976.01.T01:three_prime_UTR 40.0%
! GGTTAGTTGAAAAGGACTTG+AGG + Chr3:90240160-90240179 MsG0380016976.01.T01:intron 40.0%
! TTCATTGCTGTCTGGTTTGT+TGG + Chr3:90242278-90242297 MsG0380016976.01.T01:intron 40.0%
!! AGTGATAGTGGTAATGAACC+TGG + Chr3:90242905-90242924 MsG0380016976.01.T01:CDS 40.0%
!!! ACCCTGTTTTTTTACACAGG+AGG - Chr3:90241729-90241748 None:intergenic 40.0%
!!! TGTTGGTTCTTTTGGAACCT+TGG - Chr3:90242606-90242625 None:intergenic 40.0%
AAAATGGTTGAACCTCGTCC+CGG + Chr3:90241769-90241788 MsG0380016976.01.T01:intron 45.0%
AAGACTCCCCTTTGACAACT+TGG - Chr3:90241644-90241663 None:intergenic 45.0%
AAGGTCACAGATTCTAGTCC+TGG + Chr3:90241697-90241716 MsG0380016976.01.T01:intron 45.0%
AAGTTGTCAAAGGGGAGTCT+TGG + Chr3:90241643-90241662 MsG0380016976.01.T01:intron 45.0%
ACCACATTTACCACGATCCA+AGG + Chr3:90241307-90241326 MsG0380016976.01.T01:CDS 45.0%
ACGAAGACGACGAATCAAAG+CGG + Chr3:90242876-90242895 MsG0380016976.01.T01:CDS 45.0%
ACTCAGAGGAGATATCGATC+TGG + Chr3:90242207-90242226 MsG0380016976.01.T01:intron 45.0%
AGCACAGAAAACAGCAACAG+GGG - Chr3:90239763-90239782 None:intergenic 45.0%
AGCTTCTGATGTTCTTGACG+AGG + Chr3:90242850-90242869 MsG0380016976.01.T01:CDS 45.0%
AGTGGAGGATAAGAATTGCG+AGG - Chr3:90241236-90241255 None:intergenic 45.0%
ATACTGAGCAATGAGAGCAG+CGG - Chr3:90241400-90241419 None:intergenic 45.0%
ATTTCCTTTCCAAGCGCGAT+AGG - Chr3:90239573-90239592 None:intergenic 45.0%
CAACAATATCCCACCAAGTG+GGG - Chr3:90240739-90240758 None:intergenic 45.0%
CAATACACTGACCAACCCAT+GGG - Chr3:90241457-90241476 None:intergenic 45.0%
CATGAGGATCAAGAACTCAG+AGG + Chr3:90242193-90242212 MsG0380016976.01.T01:intron 45.0%
CGAAGGATCAACGGTATTTC+CGG - Chr3:90239540-90239559 None:intergenic 45.0%
CTTAGTCAATAAGGGAAGCC+CGG - Chr3:90241823-90241842 None:intergenic 45.0%
GATTTGATCATCACTGCCCA+TGG + Chr3:90241438-90241457 MsG0380016976.01.T01:CDS 45.0%
GCAGTATGCTTCACACAGAA+AGG + Chr3:90242759-90242778 MsG0380016976.01.T01:CDS 45.0%
GGGAACAAAGCAGCAGAAAA+TGG + Chr3:90242822-90242841 MsG0380016976.01.T01:CDS 45.0%
GTTAAGAAATGGAGCTAGGG+AGG + Chr3:90240783-90240802 MsG0380016976.01.T01:intron 45.0%
TCCTTGGATCGTGGTAAATG+TGG - Chr3:90241311-90241330 None:intergenic 45.0%
TCTGATGAGCGAAGGATCAA+CGG - Chr3:90239549-90239568 None:intergenic 45.0%
TTACAATGAGGCTGATGAGG+TGG + Chr3:90242670-90242689 MsG0380016976.01.T01:CDS 45.0%
TTGGATCGTGGTAAATGTGG+TGG - Chr3:90241308-90241327 None:intergenic 45.0%
! GATAGTGGTAATGAACCTGG+TGG + Chr3:90242908-90242927 MsG0380016976.01.T01:CDS 45.0%
!! ATTGCTGTCTGGTTTGTTGG+AGG + Chr3:90242281-90242300 MsG0380016976.01.T01:intron 45.0%
!! CTTTCTAAGGCAGTCCTTGT+GGG + Chr3:90242802-90242821 MsG0380016976.01.T01:CDS 45.0%
!! GGGGCAGAGTTTGTTATGTT+CGG + Chr3:90243007-90243026 MsG0380016976.01.T01:three_prime_UTR 45.0%
!! GTTTTTGTTGAGTTGCCACC+AGG - Chr3:90242926-90242945 None:intergenic 45.0%
!!! AGGTGTTTTTTCTTGGAGGG+AGG + Chr3:90239682-90239701 MsG0380016976.01.T01:intron 45.0%
!! AATATAATAAAAAATAGTAA+TGG + Chr3:90241898-90241917 MsG0380016976.01.T01:intron 5.0%
AAGCGGATCACCAGTGATAG+TGG + Chr3:90242893-90242912 MsG0380016976.01.T01:CDS 50.0%
ACTAAAGCTCCTGCATACGC+AGG - Chr3:90241797-90241816 None:intergenic 50.0%
AGAACCTATCGCGCTTGGAA+AGG + Chr3:90239566-90239585 MsG0380016976.01.T01:CDS 50.0%
CCAATACACTGACCAACCCA+TGG - Chr3:90241458-90241477 None:intergenic 50.0%
CCACAAGGACTGCCTTAGAA+AGG - Chr3:90242804-90242823 None:intergenic 50.0%
CTAAAGCTCCTGCATACGCA+GGG - Chr3:90241796-90241815 None:intergenic 50.0%
GAGAGAGAGAGAGAGAGAGT+TGG + Chr3:90240476-90240495 MsG0380016976.01.T01:intron 50.0%
GATCGTGGTAAATGTGGTGG+TGG - Chr3:90241305-90241324 None:intergenic 50.0%
TACTGAGCAATGAGAGCAGC+GGG - Chr3:90241399-90241418 None:intergenic 50.0%
TATGCCAGGATCTCTTCCTG+AGG - Chr3:90241210-90241229 None:intergenic 50.0%
TCATCAGAACCTATCGCGCT+TGG + Chr3:90239561-90239580 MsG0380016976.01.T01:CDS 50.0%
! ATGCAGGAGCTTTAGTGCAC+CGG + Chr3:90241801-90241820 MsG0380016976.01.T01:intron 50.0%
! CGATAGGTTCTGATGAGCGA+AGG - Chr3:90239557-90239576 None:intergenic 50.0%
! GGGACGAGGTTCAACCATTT+TGG - Chr3:90241770-90241789 None:intergenic 50.0%
! GGTTGGTCAGTGTATTGGAC+TGG + Chr3:90241460-90241479 MsG0380016976.01.T01:CDS 50.0%
! TTACACAGGAGGCTGTTTCC+AGG - Chr3:90241718-90241737 None:intergenic 50.0%
!! CCATGGGTTGGTCAGTGTAT+TGG + Chr3:90241455-90241474 MsG0380016976.01.T01:CDS 50.0%
!! CCTTTCTAAGGCAGTCCTTG+TGG + Chr3:90242801-90242820 MsG0380016976.01.T01:CDS 50.0%
!! GGTTGACTTGTCGGTCATAC+CGG - Chr3:90242505-90242524 None:intergenic 50.0%
!! TCTGCTGCTTTGTTCCCACA+AGG - Chr3:90242819-90242838 None:intergenic 50.0%
AATATCCCACCAAGTGGGGC+CGG - Chr3:90240735-90240754 None:intergenic 55.0%
ACTGAGCAATGAGAGCAGCG+GGG - Chr3:90241398-90241417 None:intergenic 55.0%
ATGCCGACGTCAAATGGTGC+CGG - Chr3:90243292-90243311 None:intergenic 55.0%
CTGACCTCAGGAAGAGATCC+TGG + Chr3:90241203-90241222 MsG0380016976.01.T01:CDS 55.0%
GATCATCACTGCCCATGGGT+TGG + Chr3:90241443-90241462 MsG0380016976.01.T01:CDS 55.0%
TTGCCGGCACCATTTGACGT+CGG + Chr3:90243286-90243305 MsG0380016976.01.T01:three_prime_UTR 55.0%
TTTCCGGCTACTGAGTTCGC+CGG - Chr3:90239524-90239543 None:intergenic 55.0%
! GAATTGCGAGGCACTATGCC+AGG - Chr3:90241224-90241243 None:intergenic 55.0%
! TGCAGGAGCTTTAGTGCACC+GGG + Chr3:90241802-90241821 MsG0380016976.01.T01:intron 55.0%
ACAAATGCATCCTCCGGCGC+CGG + Chr3:90239502-90239521 MsG0380016976.01.T01:exon 60.0%
CACGGCGACAGCGCAATTAC+CGG + Chr3:90242099-90242118 MsG0380016976.01.T01:intron 60.0%
ACCAAGTGGGGCCGGCTACA+TGG - Chr3:90240727-90240746 None:intergenic 65.0%
ATGTAGCCGGCCCCACTTGG+TGG + Chr3:90240726-90240745 MsG0380016976.01.T01:intron 65.0%
CTCCTGCATACGCAGGGTCC+GGG - Chr3:90241790-90241809 None:intergenic 65.0%
GAGCAATGAGAGCAGCGGGG+AGG - Chr3:90241395-90241414 None:intergenic 65.0%
GCTCCTGCATACGCAGGGTC+CGG - Chr3:90241791-90241810 None:intergenic 65.0%
TCCATGTAGCCGGCCCCACT+TGG + Chr3:90240723-90240742 MsG0380016976.01.T01:intron 65.0%
TGTAGCCGGCCCCACTTGGT+GGG + Chr3:90240727-90240746 MsG0380016976.01.T01:intron 65.0%
CATACGCAGGGTCCGGGACG+AGG - Chr3:90241784-90241803 None:intergenic 70.0%
GCTACTGAGTTCGCCGGCGC+CGG - Chr3:90239518-90239537 None:intergenic 70.0%
GTCCCGGACCCTGCGTATGC+AGG + Chr3:90241785-90241804 MsG0380016976.01.T01:intron 70.0%
! GCGCCGGCGAACTCAGTAGC+CGG + Chr3:90239518-90239537 MsG0380016976.01.T01:CDS 70.0%
! ACTGAGTTCGCCGGCGCCGG+AGG - Chr3:90239515-90239534 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
Chr3 gene 90239481 90243317 90239481 ID=MsG0380016976.01;Name=MsG0380016976.01
Chr3 mRNA 90239481 90243317 90239481 ID=MsG0380016976.01.T01;Parent=MsG0380016976.01;Name=MsG0380016976.01.T01;_AED=0.32;_eAED=0.32;_QI=25|0.66|1|1|1|1|4|362|348
Chr3 exon 90239481 90239595 90239481 ID=MsG0380016976.01.T01:exon:30811;Parent=MsG0380016976.01.T01
Chr3 exon 90239684 90239866 90239684 ID=MsG0380016976.01.T01:exon:30812;Parent=MsG0380016976.01.T01
Chr3 exon 90241185 90241481 90241185 ID=MsG0380016976.01.T01:exon:30813;Parent=MsG0380016976.01.T01
Chr3 exon 90242479 90243317 90242479 ID=MsG0380016976.01.T01:exon:30814;Parent=MsG0380016976.01.T01
Chr3 five_prime_UTR 90239481 90239505 90239481 ID=MsG0380016976.01.T01:five_prime_utr;Parent=MsG0380016976.01.T01
Chr3 CDS 90239506 90239595 90239506 ID=MsG0380016976.01.T01:cds;Parent=MsG0380016976.01.T01
Chr3 CDS 90239684 90239866 90239684 ID=MsG0380016976.01.T01:cds;Parent=MsG0380016976.01.T01
Chr3 CDS 90241185 90241481 90241185 ID=MsG0380016976.01.T01:cds;Parent=MsG0380016976.01.T01
Chr3 CDS 90242479 90242955 90242479 ID=MsG0380016976.01.T01:cds;Parent=MsG0380016976.01.T01
Chr3 three_prime_UTR 90242956 90243317 90242956 ID=MsG0380016976.01.T01:three_prime_utr;Parent=MsG0380016976.01.T01
Gene Sequence

>MsG0380016976.01.T01

ATGCATCCTCCGGCGCCGGCGAACTCAGTAGCCGGAAATACCGTTGATCCTTCGCTCATCAGAACCTATCGCGCTTGGAAAGGAAATAACGTGTTTTTTCTTGGAGGGAGGTTTATATTTGGACCTGATGTGAAATCTATATTTACAACGCTCTTTCTTGTGATTGCCCCTGTTGCTGTTTTCTGTGCTTTTGTAGCTAGAAAATTCTTTGATGATTTTCCTAATCACTCTGGATATTCAATTTTGATTCTTGTTATTCTTCTCACAACCTTTGTTCTGATTGCTCTTATACTGACCTCAGGAAGAGATCCTGGCATAGTGCCTCGCAATTCTTATCCTCCACTCCCAGATAATTATGATGGAAGTGACAGTAACAACAGTGAACAAAATCCACCACCACATTTACCACGATCCAAGGAAGTAATTGTCAATGGAATAGCTGTGAGAGTAAAATATTGCGATACTTGCATGCTGTATAGACCTCCCCGCTGCTCTCATTGCTCAGTATGTGATAACTGTGTGGAGCGATTTGATCATCACTGCCCATGGGTTGGTCAGTGTATTGGACTGTCTACATATGAAAATTTTAGATACCGGTATGACCGACAAGTCAACCCTTATAACAAAGGGCTAATTGAGAACTTCAAAGAAGTATTCTGCTCTTCCATTCCCATATCCAAAAACAATTTCAGGTCCAAGGTTCCAAAAGAACCAACAGAATCATCTAGACAAAGAGGTGTTGATACCCTTATGATGCCAGTTTACAATGAGGCTGATGAGGTGGAAAAAGATTATAAAGACGAGGAATATGGCAAGAGTAGTGATTTAAGTGATACATCTGTGGATTTAGGCAGTATGCTTCACACAGAAAGGGGACAGAGACAAGTTGCTTCCTTTCTAAGGCAGTCCTTGTGGGAACAAAGCAGCAGAAAATGGGAAACAGCTTCTGATGTTCTTGACGAGGTACACGAAGACGACGAATCAAAGCGGATCACCAGTGATAGTGGTAATGAACCTGGTGGCAACTCAACAAAAACGCCTCTATAA
Protein sequence

>MsG0380016976.01.T01

MHPPAPANSVAGNTVDPSLIRTYRAWKGNNVFFLGGRFIFGPDVKSIFTTLFLVIAPVAVFCAFVARKFFDDFPNHSGYSILILVILLTTFVLIALILTSGRDPGIVPRNSYPPLPDNYDGSDSNNSEQNPPPHLPRSKEVIVNGIAVRVKYCDTCMLYRPPRCSHCSVCDNCVERFDHHCPWVGQCIGLSTYENFRYRYDRQVNPYNKGLIENFKEVFCSSIPISKNNFRSKVPKEPTESSRQRGVDTLMMPVYNEADEVEKDYKDEEYGKSSDLSDTSVDLGSMLHTERGQRQVASFLRQSLWEQSSRKWETASDVLDEVHEDDESKRITSDSGNEPGGNSTKTPL*