Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0780040917.01.T01 | ABN08256.1 | 62.805 | 164 | 60 | 1 | 1 | 163 | 51 | 214 | 1.15E-53 | 190 |
MsG0780040917.01.T01 | ABN08256.1 | 87.5 | 96 | 12 | 0 | 155 | 250 | 279 | 374 | 1.82E-39 | 152 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0780040917.01.T01 | A2Q3Q6 | 62.805 | 164 | 60 | 1 | 1 | 163 | 51 | 214 | 5.48e-54 | 190 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MsG0180005873.01 | MsG0780040917.01 | 0.806468 | 8.106601e-50 | 4.403454e-47 |
MsG0780040917.01 | MsG0780041621.01 | 0.848894 | 4.581134e-60 | 8.532620e-57 |
MsG0780040917.01 | MsG0880042336.01 | 0.805631 | 1.216342e-49 | 6.467074e-47 |
MsG0780040917.01 | MsG0880045818.01 | 0.805403 | 1.357885e-49 | 7.177485e-47 |
MsG0780040917.01 | MsG0880046832.01 | 0.806948 | 6.419332e-50 | 3.530162e-47 |
MsG0680034675.01 | MsG0780040917.01 | 0.801770 | 7.696433e-49 | 3.706405e-46 |
MsG0480022319.01 | MsG0780040917.01 | 0.831003 | 2.135006e-55 | 2.287221e-52 |
MsG0480023518.01 | MsG0780040917.01 | 0.820880 | 5.428849e-53 | 4.348767e-50 |
MsG0480023772.01 | MsG0780040917.01 | 0.829425 | 5.183844e-55 | 5.303607e-52 |
MsG0380016976.01 | MsG0780040917.01 | 0.830953 | 2.196198e-55 | 2.349210e-52 |
MsG0580026095.01 | MsG0780040917.01 | 0.833124 | 6.383939e-56 | 7.284017e-53 |
MsG0580029165.01 | MsG0780040917.01 | 0.849796 | 2.569216e-60 | 4.927480e-57 |
MsG0280010521.01 | MsG0780040917.01 | 0.805798 | 1.121711e-49 | 5.989731e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0780040917.01.T01 | MTR_7g100950 | 62.805 | 164 | 60 | 1 | 1 | 163 | 51 | 214 | 8.84e-57 | 190 |
MsG0780040917.01.T01 | MTR_7g100950 | 87.500 | 96 | 12 | 0 | 155 | 250 | 279 | 374 | 5.99e-43 | 153 |
MsG0780040917.01.T01 | MTR_7g100950 | 62.805 | 164 | 60 | 1 | 1 | 163 | 51 | 214 | 9.48e-57 | 190 |
MsG0780040917.01.T01 | MTR_7g100950 | 87.500 | 96 | 12 | 0 | 155 | 250 | 279 | 374 | 6.41e-43 | 153 |
MsG0780040917.01.T01 | MTR_1g066400 | 39.521 | 167 | 93 | 5 | 1 | 163 | 51 | 213 | 1.36e-19 | 87.8 |
MsG0780040917.01.T01 | MTR_1g066400 | 50.562 | 89 | 36 | 3 | 162 | 249 | 287 | 368 | 1.84e-12 | 67.0 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Find 76 sgRNAs with CRISPR-Local
Find 109 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GGTTTCTCTGGCCATGATTC+TGG | 0.154814 | 7:+84229540 | None:intergenic |
GGAAGCTTCCATCATGAATT+TGG | 0.182286 | 7:-84229044 | MsG0780040917.01.T01:CDS |
CTATATTGAGGATCCATATT+TGG | 0.235833 | 7:+84229519 | None:intergenic |
AAATGCTTGTCTGTCATAAT+TGG | 0.279951 | 7:+84229710 | None:intergenic |
AGAGATCCACTCCAGCTTAT+AGG | 0.289351 | 7:-84228941 | MsG0780040917.01.T01:CDS |
TTGAAAACTTTGAGCAGTAT+AGG | 0.308073 | 7:+84229007 | None:intergenic |
AGGAGGTGGTACTTCAATAT+TGG | 0.308435 | 7:+84229841 | None:intergenic |
GGCTCTTCCTCTTGTGATGC+GGG | 0.334531 | 7:+84229641 | None:intergenic |
CAAGCGACACCTTCAGATAA+TGG | 0.347853 | 7:-84228894 | MsG0780040917.01.T01:CDS |
GGAGGTGGTACTTCAATATT+GGG | 0.351124 | 7:+84229842 | None:intergenic |
CTCATAGACTGAAGAATTCC+AGG | 0.355684 | 7:+84229619 | None:intergenic |
GGCTTCTTCAAGCTTGCGCT+TGG | 0.356563 | 7:-84228919 | MsG0780040917.01.T01:CDS |
GAGATCCACTCCAGCTTATA+GGG | 0.360518 | 7:-84228940 | MsG0780040917.01.T01:CDS |
TGAAAACTTTGAGCAGTATA+GGG | 0.361524 | 7:+84229008 | None:intergenic |
GCAGCAGCAGCATTTCCAAC+AGG | 0.364303 | 7:+84229098 | None:intergenic |
ACATTTATTTCCCTTCTCAT+TGG | 0.369183 | 7:-84229904 | MsG0780040917.01.T01:CDS |
ATGGCCAGAGAAACCAAATA+TGG | 0.369829 | 7:-84229532 | MsG0780040917.01.T01:CDS |
GGATCCATATTTGGTTTCTC+TGG | 0.370346 | 7:+84229528 | None:intergenic |
CAAGCATTTCATGTTGATAG+TGG | 0.392945 | 7:-84229696 | MsG0780040917.01.T01:CDS |
TTCAGTGGGTATTTCAATGC+TGG | 0.406415 | 7:-84229588 | MsG0780040917.01.T01:CDS |
AGTACCACCTCCTCATCAAT+TGG | 0.454819 | 7:-84229831 | MsG0780040917.01.T01:CDS |
AAGCGACACCTTCAGATAAT+GGG | 0.461513 | 7:-84228893 | MsG0780040917.01.T01:CDS |
TTTATGCATTCGTCTAGTGC+TGG | 0.472042 | 7:-84229779 | MsG0780040917.01.T01:CDS |
AAAATTTGACTCAGACTGCT+AGG | 0.475787 | 7:-84228986 | MsG0780040917.01.T01:CDS |
GCTTCTTCAAGCTTGCGCTT+GGG | 0.476104 | 7:-84228918 | MsG0780040917.01.T01:CDS |
AACGCCAACACAAGGTCAAA+TGG | 0.479985 | 7:-84229881 | MsG0780040917.01.T01:CDS |
TATGGATCCTCAATATAGCC+TGG | 0.494324 | 7:-84229514 | MsG0780040917.01.T01:CDS |
GGCCATGATTCTGGAGGTAT+CGG | 0.506838 | 7:+84229549 | None:intergenic |
GAGACAAGTCACTTCCCTGT+TGG | 0.507672 | 7:-84229113 | MsG0780040917.01.T01:CDS |
AGGTGCCGGTCTCTCAATGA+AGG | 0.510660 | 7:-84229462 | MsG0780040917.01.T01:CDS |
TTCCGATACCTCCAGAATCA+TGG | 0.515158 | 7:-84229551 | MsG0780040917.01.T01:CDS |
GGGCTCTTCCTCTTGTGATG+CGG | 0.522991 | 7:+84229640 | None:intergenic |
CTTGAAGAAGCCCTATAAGC+TGG | 0.523408 | 7:+84228930 | None:intergenic |
CCTCATCAATTGGACACATC+GGG | 0.526324 | 7:-84229821 | MsG0780040917.01.T01:CDS |
TATTGATCTTACAATGGGGA+TGG | 0.526750 | 7:-84229670 | MsG0780040917.01.T01:CDS |
TCAGTGGGTATTTCAATGCT+GGG | 0.527822 | 7:-84229587 | MsG0780040917.01.T01:CDS |
AAATTTGACTCAGACTGCTA+GGG | 0.527930 | 7:-84228985 | MsG0780040917.01.T01:CDS |
AGCCTGGGATCATGCTGCTA+TGG | 0.532753 | 7:-84229498 | MsG0780040917.01.T01:CDS |
TCAAATGGATATGCATCCTC+AGG | 0.533367 | 7:-84229866 | MsG0780040917.01.T01:CDS |
CTCACCCTTCATTGAGAGAC+CGG | 0.539483 | 7:+84229457 | None:intergenic |
TCCTCATCAATTGGACACAT+CGG | 0.552501 | 7:-84229822 | MsG0780040917.01.T01:CDS |
TGCCATAGCAGCATGATCCC+AGG | 0.553712 | 7:+84229496 | None:intergenic |
GTGTTGGCGTTCCAATGAGA+AGG | 0.554169 | 7:+84229893 | None:intergenic |
TGCTTGTGCCAAATTCATGA+TGG | 0.555410 | 7:+84229036 | None:intergenic |
GCACCCACATTCAGAGGTGC+CGG | 0.559572 | 7:-84229476 | MsG0780040917.01.T01:CDS |
TATGAGAGAGGCAGTTCAGT+GGG | 0.561216 | 7:-84229602 | MsG0780040917.01.T01:CDS |
TTCTCTGGCCATGATTCTGG+AGG | 0.571448 | 7:+84229543 | None:intergenic |
CATCACAAGAGGAAGAGCCC+TGG | 0.578445 | 7:-84229637 | MsG0780040917.01.T01:CDS |
TACTTCAATATTGGGGCCTG+AGG | 0.578474 | 7:+84229850 | None:intergenic |
TCTGTCATAATTGGAAGAAG+AGG | 0.581177 | 7:+84229719 | None:intergenic |
CTCATTGGAACGCCAACACA+AGG | 0.584043 | 7:-84229889 | MsG0780040917.01.T01:CDS |
AGAGTAACCTTCAGCTACCA+TGG | 0.585943 | 7:+84228867 | None:intergenic |
AGTAATGCTACTGTAGATGT+TGG | 0.586072 | 7:-84229065 | MsG0780040917.01.T01:CDS |
GACGAGCCCCGCATCACAAG+AGG | 0.589362 | 7:-84229648 | MsG0780040917.01.T01:CDS |
ATGGATCCTCAATATAGCCT+GGG | 0.590889 | 7:-84229513 | MsG0780040917.01.T01:CDS |
TCATAATTGGAAGAAGAGGC+TGG | 0.593599 | 7:+84229723 | None:intergenic |
CAGCAGCAGCATTTCCAACA+GGG | 0.598832 | 7:+84229099 | None:intergenic |
GCTATGGCACCCACATTCAG+AGG | 0.599974 | 7:-84229482 | MsG0780040917.01.T01:CDS |
TGTTGGCGTTCCAATGAGAA+GGG | 0.603138 | 7:+84229894 | None:intergenic |
CATGATCCCAGGCTATATTG+AGG | 0.603187 | 7:+84229507 | None:intergenic |
AGAAGCCCTATAAGCTGGAG+TGG | 0.603284 | 7:+84228935 | None:intergenic |
ATATCCATTTGACCTTGTGT+TGG | 0.606880 | 7:+84229877 | None:intergenic |
CTTCAGATAATGGGTTGCCA+TGG | 0.607142 | 7:-84228884 | MsG0780040917.01.T01:CDS |
CTATGAGAGAGGCAGTTCAG+TGG | 0.620290 | 7:-84229603 | MsG0780040917.01.T01:CDS |
GCTCTTCCTCTTGTGATGCG+GGG | 0.621507 | 7:+84229642 | None:intergenic |
GAGACCGGCACCTCTGAATG+TGG | 0.622677 | 7:+84229472 | None:intergenic |
CATGGCAACCCATTATCTGA+AGG | 0.623892 | 7:+84228885 | None:intergenic |
GTGTCCAATTGATGAGGAGG+TGG | 0.629316 | 7:+84229827 | None:intergenic |
TCATAGACTGAAGAATTCCA+GGG | 0.640080 | 7:+84229620 | None:intergenic |
AATTTGACTCAGACTGCTAG+GGG | 0.648157 | 7:-84228984 | MsG0780040917.01.T01:CDS |
GGTGCCGGTCTCTCAATGAA+GGG | 0.649084 | 7:-84229461 | MsG0780040917.01.T01:CDS |
AATTCTTCAGTCTATGAGAG+AGG | 0.658812 | 7:-84229614 | MsG0780040917.01.T01:CDS |
CCCGATGTGTCCAATTGATG+AGG | 0.668034 | 7:+84229821 | None:intergenic |
GATGTGTCCAATTGATGAGG+AGG | 0.670155 | 7:+84229824 | None:intergenic |
AGACCGGCACCTCTGAATGT+GGG | 0.686213 | 7:+84229473 | None:intergenic |
GAGGTGGTACTTCAATATTG+GGG | 0.743287 | 7:+84229843 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
! | TAATAACATTCTTCCATTAG+CGG | + | Chr7:84229554-84229573 | None:intergenic | 25.0% |
!!! | GGTTTTATTGATCTTACAAT+GGG | - | Chr7:84229123-84229142 | MsG0780040917.01.T01:CDS | 25.0% |
!!! | GTTTTATTGATCTTACAATG+GGG | - | Chr7:84229124-84229143 | MsG0780040917.01.T01:CDS | 25.0% |
!!! | TGGTTTTATTGATCTTACAA+TGG | - | Chr7:84229122-84229141 | MsG0780040917.01.T01:CDS | 25.0% |
AAATGCTTGTCTGTCATAAT+TGG | + | Chr7:84229091-84229110 | None:intergenic | 30.0% | |
AATGGAAGAATGTTATTACC+AGG | - | Chr7:84229556-84229575 | MsG0780040917.01.T01:CDS | 30.0% | |
ACATTTATTTCCCTTCTCAT+TGG | - | Chr7:84228894-84228913 | MsG0780040917.01.T01:CDS | 30.0% | |
ATTGTTTAGACATACAAGTG+AGG | + | Chr7:84229631-84229650 | None:intergenic | 30.0% | |
CTATATTGAGGATCCATATT+TGG | + | Chr7:84229282-84229301 | None:intergenic | 30.0% | |
TGAAAACTTTGAGCAGTATA+GGG | + | Chr7:84229793-84229812 | None:intergenic | 30.0% | |
TGAATGGCTACTTGATAAAT+GGG | + | Chr7:84229427-84229446 | None:intergenic | 30.0% | |
TTGAAAACTTTGAGCAGTAT+AGG | + | Chr7:84229794-84229813 | None:intergenic | 30.0% | |
! | TTTTCAGATACTGCAAAGAA+AGG | + | Chr7:84229046-84229065 | None:intergenic | 30.0% |
AAAATTTGACTCAGACTGCT+AGG | - | Chr7:84229812-84229831 | MsG0780040917.01.T01:CDS | 35.0% | |
AAATTTGACTCAGACTGCTA+GGG | - | Chr7:84229813-84229832 | MsG0780040917.01.T01:CDS | 35.0% | |
AATTCTTCAGTCTATGAGAG+AGG | - | Chr7:84229184-84229203 | MsG0780040917.01.T01:intron | 35.0% | |
AGAGTTCTGTAAGGAATGTT+AGG | - | Chr7:84229362-84229381 | MsG0780040917.01.T01:intron | 35.0% | |
AGTAATGCTACTGTAGATGT+TGG | - | Chr7:84229733-84229752 | MsG0780040917.01.T01:CDS | 35.0% | |
ATATCCATTTGACCTTGTGT+TGG | + | Chr7:84228924-84228943 | None:intergenic | 35.0% | |
GATTCCAAATCAGTGAAGAA+CGG | + | Chr7:84229390-84229409 | None:intergenic | 35.0% | |
GTGAATGGCTACTTGATAAA+TGG | + | Chr7:84229428-84229447 | None:intergenic | 35.0% | |
TATTGATCTTACAATGGGGA+TGG | - | Chr7:84229128-84229147 | MsG0780040917.01.T01:CDS | 35.0% | |
TCATAGACTGAAGAATTCCA+GGG | + | Chr7:84229181-84229200 | None:intergenic | 35.0% | |
TCTGTCATAATTGGAAGAAG+AGG | + | Chr7:84229082-84229101 | None:intergenic | 35.0% | |
! | CAAGCATTTCATGTTGATAG+TGG | - | Chr7:84229102-84229121 | MsG0780040917.01.T01:CDS | 35.0% |
! | TGTTATTACCAGGTTAGTTG+TGG | - | Chr7:84229566-84229585 | MsG0780040917.01.T01:CDS | 35.0% |
!! | ACAAAAGTACTAGCATCTGT+AGG | + | Chr7:84229662-84229681 | None:intergenic | 35.0% |
AAGCGACACCTTCAGATAAT+GGG | - | Chr7:84229905-84229924 | MsG0780040917.01.T01:CDS | 40.0% | |
AATGAACGTAACTCCGCTAA+TGG | - | Chr7:84229538-84229557 | MsG0780040917.01.T01:CDS | 40.0% | |
AATTTGACTCAGACTGCTAG+GGG | - | Chr7:84229814-84229833 | MsG0780040917.01.T01:CDS | 40.0% | |
AGGAGGTGGTACTTCAATAT+TGG | + | Chr7:84228960-84228979 | None:intergenic | 40.0% | |
ATGGATCCTCAATATAGCCT+GGG | - | Chr7:84229285-84229304 | MsG0780040917.01.T01:intron | 40.0% | |
ATGGCCAGAGAAACCAAATA+TGG | - | Chr7:84229266-84229285 | MsG0780040917.01.T01:intron | 40.0% | |
CATAATGACCACAACTAACC+TGG | + | Chr7:84229577-84229596 | None:intergenic | 40.0% | |
CTCATAGACTGAAGAATTCC+AGG | + | Chr7:84229182-84229201 | None:intergenic | 40.0% | |
GAGGTGGTACTTCAATATTG+GGG | + | Chr7:84228958-84228977 | None:intergenic | 40.0% | |
GGAAGCTTCCATCATGAATT+TGG | - | Chr7:84229754-84229773 | MsG0780040917.01.T01:CDS | 40.0% | |
GGAGGTGGTACTTCAATATT+GGG | + | Chr7:84228959-84228978 | None:intergenic | 40.0% | |
TATGGATCCTCAATATAGCC+TGG | - | Chr7:84229284-84229303 | MsG0780040917.01.T01:intron | 40.0% | |
TCAAATGGATATGCATCCTC+AGG | - | Chr7:84228932-84228951 | MsG0780040917.01.T01:CDS | 40.0% | |
TCAGTGGGTATTTCAATGCT+GGG | - | Chr7:84229211-84229230 | MsG0780040917.01.T01:intron | 40.0% | |
TCATAATTGGAAGAAGAGGC+TGG | + | Chr7:84229078-84229097 | None:intergenic | 40.0% | |
TCCTCATCAATTGGACACAT+CGG | - | Chr7:84228976-84228995 | MsG0780040917.01.T01:CDS | 40.0% | |
TGCTTGTGCCAAATTCATGA+TGG | + | Chr7:84229765-84229784 | None:intergenic | 40.0% | |
TTAGCGGAGTTACGTTCATT+TGG | + | Chr7:84229538-84229557 | None:intergenic | 40.0% | |
TTCAGTGGGTATTTCAATGC+TGG | - | Chr7:84229210-84229229 | MsG0780040917.01.T01:intron | 40.0% | |
TTTATGCATTCGTCTAGTGC+TGG | - | Chr7:84229019-84229038 | MsG0780040917.01.T01:CDS | 40.0% | |
! | GGATCCATATTTGGTTTCTC+TGG | + | Chr7:84229273-84229292 | None:intergenic | 40.0% |
AACGCCAACACAAGGTCAAA+TGG | - | Chr7:84228917-84228936 | MsG0780040917.01.T01:CDS | 45.0% | |
AGAGATCCACTCCAGCTTAT+AGG | - | Chr7:84229857-84229876 | MsG0780040917.01.T01:CDS | 45.0% | |
AGTACCACCTCCTCATCAAT+TGG | - | Chr7:84228967-84228986 | MsG0780040917.01.T01:CDS | 45.0% | |
CAAGCGACACCTTCAGATAA+TGG | - | Chr7:84229904-84229923 | MsG0780040917.01.T01:CDS | 45.0% | |
CATGATCCCAGGCTATATTG+AGG | + | Chr7:84229294-84229313 | None:intergenic | 45.0% | |
CATGGCAACCCATTATCTGA+AGG | + | Chr7:84229916-84229935 | None:intergenic | 45.0% | |
CCTCATCAATTGGACACATC+GGG | - | Chr7:84228977-84228996 | MsG0780040917.01.T01:CDS | 45.0% | |
CTTGAAGAAGCCCTATAAGC+TGG | + | Chr7:84229871-84229890 | None:intergenic | 45.0% | |
GAAAGATCGGCAAGCTAGAA+TGG | + | Chr7:84229482-84229501 | None:intergenic | 45.0% | |
GAGATCCACTCCAGCTTATA+GGG | - | Chr7:84229858-84229877 | MsG0780040917.01.T01:CDS | 45.0% | |
GATGTGTCCAATTGATGAGG+AGG | + | Chr7:84228977-84228996 | None:intergenic | 45.0% | |
GGTGGAAACCTGAGAAAGAT+CGG | + | Chr7:84229495-84229514 | None:intergenic | 45.0% | |
TACTTCAATATTGGGGCCTG+AGG | + | Chr7:84228951-84228970 | None:intergenic | 45.0% | |
TAGGATACGAGCTGTGTGAA+TGG | + | Chr7:84229443-84229462 | None:intergenic | 45.0% | |
TATGAGAGAGGCAGTTCAGT+GGG | - | Chr7:84229196-84229215 | MsG0780040917.01.T01:intron | 45.0% | |
TGAAGGGTGAGAGTTCTGTA+AGG | - | Chr7:84229353-84229372 | MsG0780040917.01.T01:intron | 45.0% | |
TGTTGGCGTTCCAATGAGAA+GGG | + | Chr7:84228907-84228926 | None:intergenic | 45.0% | |
TTCCGATACCTCCAGAATCA+TGG | - | Chr7:84229247-84229266 | MsG0780040917.01.T01:intron | 45.0% | |
TTGATAAATGGGTCCTGCAC+AGG | + | Chr7:84229416-84229435 | None:intergenic | 45.0% | |
! | ATTTGGAATCCAACCTGTGC+AGG | - | Chr7:84229400-84229419 | MsG0780040917.01.T01:intron | 45.0% |
!! | CTTCAGATAATGGGTTGCCA+TGG | - | Chr7:84229914-84229933 | MsG0780040917.01.T01:CDS | 45.0% |
AAGCTAGAATGGCTGACTGG+TGG | + | Chr7:84229471-84229490 | None:intergenic | 50.0% | |
AGAAGCCCTATAAGCTGGAG+TGG | + | Chr7:84229866-84229885 | None:intergenic | 50.0% | |
AGCTAGAATGGCTGACTGGT+GGG | + | Chr7:84229470-84229489 | None:intergenic | 50.0% | |
AGGTTTCCACCTCTCTGACA+AGG | - | Chr7:84229504-84229523 | MsG0780040917.01.T01:CDS | 50.0% | |
CAGCAGCAGCATTTCCAACA+GGG | + | Chr7:84229702-84229721 | None:intergenic | 50.0% | |
CCCGATGTGTCCAATTGATG+AGG | + | Chr7:84228980-84228999 | None:intergenic | 50.0% | |
CTATGAGAGAGGCAGTTCAG+TGG | - | Chr7:84229195-84229214 | MsG0780040917.01.T01:intron | 50.0% | |
CTCACCCTTCATTGAGAGAC+CGG | + | Chr7:84229344-84229363 | None:intergenic | 50.0% | |
CTCATTGGAACGCCAACACA+AGG | - | Chr7:84228909-84228928 | MsG0780040917.01.T01:CDS | 50.0% | |
GAGACAAGTCACTTCCCTGT+TGG | - | Chr7:84229685-84229704 | MsG0780040917.01.T01:CDS | 50.0% | |
GCTTCTTCAAGCTTGCGCTT+GGG | - | Chr7:84229880-84229899 | MsG0780040917.01.T01:CDS | 50.0% | |
GGTTTCCACCTCTCTGACAA+GGG | - | Chr7:84229505-84229524 | MsG0780040917.01.T01:CDS | 50.0% | |
GGTTTCTCTGGCCATGATTC+TGG | + | Chr7:84229261-84229280 | None:intergenic | 50.0% | |
GTGTCCAATTGATGAGGAGG+TGG | + | Chr7:84228974-84228993 | None:intergenic | 50.0% | |
TAAATGGGTCCTGCACAGGT+TGG | + | Chr7:84229412-84229431 | None:intergenic | 50.0% | |
TTCTCTGGCCATGATTCTGG+AGG | + | Chr7:84229258-84229277 | None:intergenic | 50.0% | |
! | CTAGCTTGCCGATCTTTCTC+AGG | - | Chr7:84229484-84229503 | MsG0780040917.01.T01:CDS | 50.0% |
! | GGAGCCGTTCTTCACTGATT+TGG | - | Chr7:84229383-84229402 | MsG0780040917.01.T01:intron | 50.0% |
! | GGCCATGATTCTGGAGGTAT+CGG | + | Chr7:84229252-84229271 | None:intergenic | 50.0% |
! | GTGTTGGCGTTCCAATGAGA+AGG | + | Chr7:84228908-84228927 | None:intergenic | 50.0% |
AGACCGGCACCTCTGAATGT+GGG | + | Chr7:84229328-84229347 | None:intergenic | 55.0% | |
AGCCTGGGATCATGCTGCTA+TGG | - | Chr7:84229300-84229319 | MsG0780040917.01.T01:intron | 55.0% | |
CATCACAAGAGGAAGAGCCC+TGG | - | Chr7:84229161-84229180 | MsG0780040917.01.T01:intron | 55.0% | |
CCAATCCCTTGTCAGAGAGG+TGG | + | Chr7:84229513-84229532 | None:intergenic | 55.0% | |
CCACCTCTCTGACAAGGGAT+TGG | - | Chr7:84229510-84229529 | MsG0780040917.01.T01:CDS | 55.0% | |
GCAGCAGCAGCATTTCCAAC+AGG | + | Chr7:84229703-84229722 | None:intergenic | 55.0% | |
GCTATGGCACCCACATTCAG+AGG | - | Chr7:84229316-84229335 | MsG0780040917.01.T01:intron | 55.0% | |
GCTCCAATCCCTTGTCAGAG+AGG | + | Chr7:84229516-84229535 | None:intergenic | 55.0% | |
GCTCTTCCTCTTGTGATGCG+GGG | + | Chr7:84229159-84229178 | None:intergenic | 55.0% | |
GGCAAGCTAGAATGGCTGAC+TGG | + | Chr7:84229474-84229493 | None:intergenic | 55.0% | |
GGCTCTTCCTCTTGTGATGC+GGG | + | Chr7:84229160-84229179 | None:intergenic | 55.0% | |
GGCTTCTTCAAGCTTGCGCT+TGG | - | Chr7:84229879-84229898 | MsG0780040917.01.T01:CDS | 55.0% | |
GGGCTCTTCCTCTTGTGATG+CGG | + | Chr7:84229161-84229180 | None:intergenic | 55.0% | |
TGCCATAGCAGCATGATCCC+AGG | + | Chr7:84229305-84229324 | None:intergenic | 55.0% | |
!! | AGGTGCCGGTCTCTCAATGA+AGG | - | Chr7:84229336-84229355 | MsG0780040917.01.T01:intron | 55.0% |
!! | GGTGCCGGTCTCTCAATGAA+GGG | - | Chr7:84229337-84229356 | MsG0780040917.01.T01:intron | 55.0% |
GAGACCGGCACCTCTGAATG+TGG | + | Chr7:84229329-84229348 | None:intergenic | 60.0% | |
TGGCTGACTGGTGGGACAGT+AGG | + | Chr7:84229462-84229481 | None:intergenic | 60.0% | |
! | GCACCCACATTCAGAGGTGC+CGG | - | Chr7:84229322-84229341 | MsG0780040917.01.T01:intron | 60.0% |
GACGAGCCCCGCATCACAAG+AGG | - | Chr7:84229150-84229169 | MsG0780040917.01.T01:intron | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
Chr7 | gene | 84228881 | 84229939 | 84228881 | ID=MsG0780040917.01;Name=MsG0780040917.01 |
Chr7 | mRNA | 84228881 | 84229939 | 84228881 | ID=MsG0780040917.01.T01;Parent=MsG0780040917.01;Name=MsG0780040917.01.T01;_AED=0.44;_eAED=0.44;_QI=0|0|0|1|1|1|2|0|251 |
Chr7 | exon | 84229451 | 84229939 | 84229451 | ID=MsG0780040917.01.T01:exon:40680;Parent=MsG0780040917.01.T01 |
Chr7 | exon | 84228881 | 84229147 | 84228881 | ID=MsG0780040917.01.T01:exon:40679;Parent=MsG0780040917.01.T01 |
Chr7 | CDS | 84229451 | 84229939 | 84229451 | ID=MsG0780040917.01.T01:cds;Parent=MsG0780040917.01.T01 |
Chr7 | CDS | 84228881 | 84229147 | 84228881 | ID=MsG0780040917.01.T01:cds;Parent=MsG0780040917.01.T01 |
Gene Sequence |
Protein sequence |