Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380017034.01.T01 | XP_003602860.2 | 92.742 | 372 | 25 | 2 | 1 | 371 | 1 | 371 | 0 | 692 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380017034.01.T01 | Q9FZ95 | 59.475 | 343 | 126 | 3 | 13 | 355 | 1 | 330 | 1.87E-144 | 416 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380017034.01.T01 | G7J4H5 | 92.742 | 372 | 25 | 2 | 1 | 371 | 1 | 371 | 0.0 | 692 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|---|---|
| MsG0380017035.01 | MsG0380017034.01 | PPI |
| MsG0580027899.01 | MsG0380017034.01 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380017034.01.T01 | MTR_3g099740 | 92.742 | 372 | 25 | 2 | 1 | 371 | 1 | 371 | 0.0 | 692 |
| MsG0380017034.01.T01 | MTR_3g099750 | 87.871 | 371 | 44 | 1 | 1 | 371 | 1 | 370 | 0.0 | 665 |
| MsG0380017034.01.T01 | MTR_5g065080 | 63.315 | 368 | 120 | 5 | 2 | 368 | 10 | 363 | 3.09e-157 | 446 |
| MsG0380017034.01.T01 | MTR_2g437590 | 37.644 | 348 | 195 | 5 | 14 | 358 | 67 | 395 | 8.94e-72 | 230 |
| MsG0380017034.01.T01 | MTR_3g058660 | 32.749 | 342 | 220 | 2 | 3 | 344 | 2 | 333 | 1.38e-62 | 204 |
| MsG0380017034.01.T01 | MTR_2g015470 | 31.429 | 350 | 228 | 3 | 16 | 365 | 42 | 379 | 3.54e-60 | 199 |
| MsG0380017034.01.T01 | MTR_2g437580 | 33.702 | 362 | 209 | 5 | 1 | 354 | 34 | 372 | 3.00e-55 | 186 |
| MsG0380017034.01.T01 | MTR_8g024620 | 32.622 | 328 | 202 | 2 | 17 | 344 | 43 | 351 | 6.21e-52 | 177 |
| MsG0380017034.01.T01 | MTR_8g024620 | 32.622 | 328 | 202 | 2 | 17 | 344 | 54 | 362 | 1.03e-51 | 176 |
| MsG0380017034.01.T01 | MTR_8g024620 | 32.622 | 328 | 202 | 2 | 17 | 344 | 55 | 363 | 1.05e-51 | 176 |
| MsG0380017034.01.T01 | MTR_7g080750 | 32.000 | 350 | 200 | 6 | 11 | 351 | 20 | 340 | 1.35e-50 | 173 |
| MsG0380017034.01.T01 | MTR_4g098900 | 30.836 | 347 | 205 | 8 | 25 | 367 | 44 | 359 | 1.96e-50 | 174 |
| MsG0380017034.01.T01 | MTR_6g082540 | 33.333 | 153 | 102 | 0 | 197 | 349 | 4 | 156 | 5.09e-25 | 100 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380017034.01.T01 | AT1G28220 | 59.475 | 343 | 126 | 3 | 13 | 355 | 1 | 330 | 1.91e-145 | 416 |
| MsG0380017034.01.T01 | AT2G33750 | 55.398 | 352 | 143 | 2 | 12 | 363 | 2 | 339 | 7.02e-134 | 386 |
| MsG0380017034.01.T01 | AT1G28230 | 58.601 | 343 | 136 | 2 | 13 | 354 | 1 | 338 | 2.12e-132 | 383 |
| MsG0380017034.01.T01 | AT2G33750 | 53.719 | 363 | 143 | 3 | 12 | 363 | 2 | 350 | 2.55e-130 | 378 |
| MsG0380017034.01.T01 | AT4G18205 | 36.585 | 328 | 184 | 5 | 37 | 360 | 61 | 368 | 2.08e-57 | 191 |
| MsG0380017034.01.T01 | AT4G18220 | 33.537 | 328 | 203 | 2 | 28 | 355 | 57 | 369 | 2.68e-57 | 191 |
| MsG0380017034.01.T01 | AT4G18210 | 30.532 | 357 | 231 | 4 | 1 | 355 | 28 | 369 | 9.42e-53 | 180 |
| MsG0380017034.01.T01 | AT1G30840 | 32.320 | 362 | 212 | 5 | 17 | 363 | 27 | 370 | 4.65e-52 | 177 |
| MsG0380017034.01.T01 | AT1G30840 | 32.320 | 362 | 212 | 5 | 17 | 363 | 27 | 370 | 4.65e-52 | 177 |
| MsG0380017034.01.T01 | AT4G18197 | 35.826 | 321 | 182 | 5 | 37 | 353 | 64 | 364 | 6.23e-51 | 175 |
| MsG0380017034.01.T01 | AT4G18195 | 31.921 | 354 | 224 | 5 | 3 | 355 | 32 | 369 | 1.64e-49 | 171 |
| MsG0380017034.01.T01 | AT1G44750 | 30.141 | 355 | 227 | 3 | 11 | 360 | 26 | 364 | 3.57e-45 | 159 |
| MsG0380017034.01.T01 | AT1G44750 | 30.141 | 355 | 227 | 3 | 11 | 360 | 26 | 364 | 3.57e-45 | 159 |
| MsG0380017034.01.T01 | AT1G44750 | 30.141 | 355 | 227 | 3 | 11 | 360 | 38 | 376 | 4.81e-45 | 159 |
| MsG0380017034.01.T01 | AT1G44750 | 33.074 | 257 | 168 | 1 | 108 | 360 | 44 | 300 | 6.72e-44 | 154 |
| MsG0380017034.01.T01 | AT1G44750 | 33.074 | 257 | 168 | 1 | 108 | 360 | 44 | 300 | 6.72e-44 | 154 |
| MsG0380017034.01.T01 | AT1G44750 | 33.074 | 257 | 168 | 1 | 108 | 360 | 44 | 300 | 6.72e-44 | 154 |
| MsG0380017034.01.T01 | AT1G44750 | 33.074 | 257 | 168 | 1 | 108 | 360 | 44 | 300 | 6.72e-44 | 154 |
| MsG0380017034.01.T01 | AT1G44750 | 33.074 | 257 | 168 | 1 | 108 | 360 | 44 | 300 | 6.72e-44 | 154 |
| MsG0380017034.01.T01 | AT4G18190 | 31.215 | 362 | 229 | 4 | 3 | 357 | 20 | 368 | 9.23e-43 | 153 |
| MsG0380017034.01.T01 | AT2G24220 | 34.967 | 306 | 178 | 3 | 34 | 338 | 56 | 341 | 1.37e-40 | 147 |
| MsG0380017034.01.T01 | AT2G24220 | 34.967 | 306 | 178 | 3 | 34 | 338 | 74 | 359 | 1.69e-40 | 147 |
| MsG0380017034.01.T01 | AT4G08700 | 27.350 | 351 | 228 | 4 | 12 | 354 | 28 | 359 | 1.31e-38 | 142 |
| MsG0380017034.01.T01 | AT5G41160 | 27.356 | 329 | 211 | 3 | 34 | 354 | 54 | 362 | 1.39e-34 | 131 |
| MsG0380017034.01.T01 | AT1G19770 | 27.389 | 314 | 206 | 5 | 47 | 349 | 88 | 390 | 9.37e-26 | 107 |
| MsG0380017034.01.T01 | AT1G57943 | 24.796 | 367 | 234 | 9 | 11 | 353 | 37 | 385 | 4.23e-19 | 88.6 |
| MsG0380017034.01.T01 | AT1G57943 | 24.796 | 367 | 234 | 9 | 11 | 353 | 36 | 384 | 4.28e-19 | 88.2 |
| MsG0380017034.01.T01 | AT1G57980 | 26.882 | 372 | 222 | 11 | 7 | 353 | 35 | 381 | 3.72e-17 | 82.8 |
| MsG0380017034.01.T01 | AT1G57990 | 25.199 | 377 | 237 | 13 | 10 | 364 | 31 | 384 | 5.03e-17 | 82.0 |
| MsG0380017034.01.T01 | AT1G47603 | 26.271 | 354 | 224 | 9 | 17 | 352 | 49 | 383 | 6.98e-17 | 81.6 |
Find 107 sgRNAs with CRISPR-Local
Find 152 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCAAGGGAAGCCAGAAATTT+TGG | 0.087944 | 3:+91032148 | MsG0380017034.01.T01:CDS |
| GTGAAATTCAATTATATTAT+TGG | 0.098731 | 3:-91032662 | None:intergenic |
| TTCTCCTAGCCCAAAATTTC+TGG | 0.134659 | 3:-91032158 | None:intergenic |
| GTCACTTGTACTTTCTCTTT+GGG | 0.234346 | 3:+91032366 | MsG0380017034.01.T01:CDS |
| TGTCACTTGTACTTTCTCTT+TGG | 0.252362 | 3:+91032365 | MsG0380017034.01.T01:CDS |
| GGGTTTGTGTCCTATTTCTA+TGG | 0.257650 | 3:+91032388 | MsG0380017034.01.T01:CDS |
| CATCACTTATTCTCTTGTTA+TGG | 0.272446 | 3:+91031576 | MsG0380017034.01.T01:CDS |
| TACTGTTGGAGCTGGTGTTT+TGG | 0.297117 | 3:+91031411 | MsG0380017034.01.T01:CDS |
| AAGCTGAGATGCTATAATTA+AGG | 0.307702 | 3:-91031311 | None:intergenic |
| TTTGATCTCTCCATAGAAAT+AGG | 0.310546 | 3:-91032398 | None:intergenic |
| TTCTTCGCAGCCGCCTTTGT+CGG | 0.322986 | 3:+91031220 | MsG0380017034.01.T01:CDS |
| TCCACGGTGGCCAACGTGTC+TGG | 0.357144 | 3:+91031035 | MsG0380017034.01.T01:CDS |
| ATTAAGGAAGAAGTGGAAAC+TGG | 0.360569 | 3:-91031295 | None:intergenic |
| GCCACTCTCTTCTGTGTCAT+AGG | 0.361474 | 3:+91031625 | MsG0380017034.01.T01:CDS |
| AATATTGATCCCAGTAAGTA+TGG | 0.365387 | 3:+91032619 | MsG0380017034.01.T01:three_prime_UTR |
| AGTAAGTATGGTTACGGTAT+AGG | 0.365441 | 3:+91032631 | MsG0380017034.01.T01:three_prime_UTR |
| AAGGCGGCTGCGAAGAAAAT+AGG | 0.380819 | 3:-91031214 | None:intergenic |
| GTTGCTGCTTCTGCATTGTA+TGG | 0.384050 | 3:+91031505 | MsG0380017034.01.T01:CDS |
| TGGTGGATGGTGGAGGATGG+TGG | 0.385105 | 3:-91031141 | None:intergenic |
| AGCATCTCAGCTTGGTTTCA+CGG | 0.387235 | 3:+91031321 | MsG0380017034.01.T01:CDS |
| TTGTGCTTCATCGTTATTGT+CGG | 0.390415 | 3:+91032258 | MsG0380017034.01.T01:CDS |
| TATACCGTAACCATACTTAC+TGG | 0.395769 | 3:-91032629 | None:intergenic |
| TCTGCAAAACAATATGCAAT+TGG | 0.407462 | 3:+91031469 | MsG0380017034.01.T01:CDS |
| AATGAGCATCAAGGGGAAAC+CGG | 0.411490 | 3:-91031080 | None:intergenic |
| GTGGAGGATGGTGGCGGTGA+CGG | 0.413276 | 3:-91031132 | None:intergenic |
| TGGTGGTGGATGGTGGAGGA+TGG | 0.424033 | 3:-91031144 | None:intergenic |
| GGGGCTACCTGCTCCGTGAT+TGG | 0.428397 | 3:+91032480 | MsG0380017034.01.T01:exon |
| ACTGCCAACACTTCCGTTAG+TGG | 0.430603 | 3:-91032304 | None:intergenic |
| CCAAAATTTCTGGCTTCCCT+TGG | 0.437025 | 3:-91032148 | None:intergenic |
| CTGCTCCGTGATTGGAATGT+AGG | 0.438691 | 3:+91032488 | MsG0380017034.01.T01:exon |
| ATGGAGATGGTGGTGGATGG+TGG | 0.439294 | 3:-91031151 | None:intergenic |
| AGGGGAAACCGGCGGTTTCA+AGG | 0.456800 | 3:-91031069 | None:intergenic |
| TCTCTTCTTTGTCACTACTT+TGG | 0.458682 | 3:-91030874 | None:intergenic |
| GAAGAAAATAGGTGGTTTCA+TGG | 0.464745 | 3:-91031203 | None:intergenic |
| TGTGCTTCATCGTTATTGTC+GGG | 0.468631 | 3:+91032259 | MsG0380017034.01.T01:CDS |
| TGAAATAGAGACGCATTATG+AGG | 0.471366 | 3:-91031012 | None:intergenic |
| GAAACCGGCGGTTTCAAGGC+AGG | 0.471915 | 3:-91031065 | None:intergenic |
| TATACGCATATGGCGTTGCT+CGG | 0.473462 | 3:+91031269 | MsG0380017034.01.T01:CDS |
| GGTGGCGGTGACGGCAGCGT+TGG | 0.474148 | 3:-91031123 | None:intergenic |
| CTTGATGCTCAGATATGTAA+AGG | 0.474731 | 3:-91030826 | None:intergenic |
| AGAGATGGGTCAAACTATAG+AGG | 0.476548 | 3:+91032459 | MsG0380017034.01.T01:CDS |
| AATTGAATTTCACTTAAAGC+TGG | 0.477024 | 3:+91032672 | MsG0380017034.01.T01:three_prime_UTR |
| GAGATGGTGGTGGATGGTGG+AGG | 0.481262 | 3:-91031148 | None:intergenic |
| TTCTGCAGGGGAGATGGAGA+TGG | 0.481331 | 3:-91031164 | None:intergenic |
| TCCGCCTGCCTTGAAACCGC+CGG | 0.494963 | 3:+91031061 | MsG0380017034.01.T01:CDS |
| TTGATGCTCAGATATGTAAA+GGG | 0.495655 | 3:-91030825 | None:intergenic |
| TGGATGGTGGAGGATGGTGG+CGG | 0.496654 | 3:-91031138 | None:intergenic |
| GACGACTATCTATACGCATA+TGG | 0.496685 | 3:+91031259 | MsG0380017034.01.T01:CDS |
| TCACTTGTACTTTCTCTTTG+GGG | 0.497301 | 3:+91032367 | MsG0380017034.01.T01:CDS |
| TGCTATAATTAAGGAAGAAG+TGG | 0.500757 | 3:-91031302 | None:intergenic |
| GATCCCAGTAAGTATGGTTA+CGG | 0.513267 | 3:+91032625 | MsG0380017034.01.T01:three_prime_UTR |
| GCCTTTGTCGGAATCCTCAC+CGG | 0.517140 | 3:+91031232 | MsG0380017034.01.T01:CDS |
| GAGAACACACACATGGAAGA+AGG | 0.519888 | 3:+91030902 | MsG0380017034.01.T01:exon |
| TGAAATTGTAGGTGATTCCA+AGG | 0.522629 | 3:+91032131 | MsG0380017034.01.T01:intron |
| CACTTGTACTTTCTCTTTGG+GGG | 0.524039 | 3:+91032368 | MsG0380017034.01.T01:CDS |
| GAGATGGAGATGGTGGTGGA+TGG | 0.526036 | 3:-91031154 | None:intergenic |
| AAGCACTTACTATGTTGTGC+TGG | 0.526613 | 3:+91032180 | MsG0380017034.01.T01:CDS |
| AGGGGAGATGGAGATGGTGG+TGG | 0.533508 | 3:-91031158 | None:intergenic |
| ACGAGTAGTGATCGTCCTGC+TGG | 0.534270 | 3:+91031442 | MsG0380017034.01.T01:CDS |
| TGCTCCGTGATTGGAATGTA+GGG | 0.537310 | 3:+91032489 | MsG0380017034.01.T01:exon |
| GAGATGGGTCAAACTATAGA+GGG | 0.546898 | 3:+91032460 | MsG0380017034.01.T01:CDS |
| GAAATAGAGACGCATTATGA+GGG | 0.555409 | 3:-91031011 | None:intergenic |
| TGTGAGGGGAATGAGCATCA+AGG | 0.555704 | 3:-91031089 | None:intergenic |
| TGCAGGGGAGATGGAGATGG+TGG | 0.556329 | 3:-91031161 | None:intergenic |
| ATACCGTAACCATACTTACT+GGG | 0.557734 | 3:-91032628 | None:intergenic |
| TACACCCTACATTCCAATCA+CGG | 0.558530 | 3:-91032493 | None:intergenic |
| TGCTGTGTTGTTACCACTAA+CGG | 0.559279 | 3:+91032291 | MsG0380017034.01.T01:CDS |
| TTAATTATAGCATCTCAGCT+TGG | 0.560458 | 3:+91031313 | MsG0380017034.01.T01:CDS |
| GGGGACCACCGGAGTTACCT+AGG | 0.561334 | 3:-91030991 | None:intergenic |
| GTATAGATAGTCGTCAAGAC+CGG | 0.571261 | 3:-91031251 | None:intergenic |
| GTGAGGGGAATGAGCATCAA+GGG | 0.571589 | 3:-91031088 | None:intergenic |
| AGTATGGTTACGGTATAGGC+AGG | 0.571861 | 3:+91032635 | MsG0380017034.01.T01:three_prime_UTR |
| TGAGACAATTTACGATGAGA+AGG | 0.575041 | 3:-91030961 | None:intergenic |
| ACCGGTGAGGATTCCGACAA+AGG | 0.576753 | 3:-91031233 | None:intergenic |
| ACGCATTATGAGGGGACCAC+CGG | 0.577761 | 3:-91031002 | None:intergenic |
| ACGTGGTTTAGAAATAGAGA+TGG | 0.580816 | 3:+91032444 | MsG0380017034.01.T01:CDS |
| CTACATTCCAATCACGGAGC+AGG | 0.590513 | 3:-91032487 | None:intergenic |
| GTTACCACTAACGGAAGTGT+TGG | 0.591263 | 3:+91032300 | MsG0380017034.01.T01:CDS |
| AATTGTCTCATATTAGCCCT+AGG | 0.596481 | 3:+91030974 | MsG0380017034.01.T01:CDS |
| CGTGGTTTAGAAATAGAGAT+GGG | 0.596725 | 3:+91032445 | MsG0380017034.01.T01:CDS |
| ATGCGTCTCTATTTCATCCA+CGG | 0.600150 | 3:+91031019 | MsG0380017034.01.T01:CDS |
| ATATTAGCCCTAGGTAACTC+CGG | 0.600554 | 3:+91030983 | MsG0380017034.01.T01:CDS |
| TTATAAACCAACTCAACCGC+AGG | 0.602436 | 3:-91031538 | None:intergenic |
| ATAACAAGAGAATAAGTGAT+GGG | 0.603082 | 3:-91031574 | None:intergenic |
| CATAACAAGAGAATAAGTGA+TGG | 0.603170 | 3:-91031575 | None:intergenic |
| GAACAGAGAGAACACACACA+TGG | 0.621450 | 3:+91030895 | MsG0380017034.01.T01:exon |
| GCCAGACACGTTGGCCACCG+TGG | 0.635417 | 3:-91031036 | None:intergenic |
| TCCAACAGTAAGCAAAACAA+TGG | 0.645563 | 3:-91031398 | None:intergenic |
| CAATGCAGAAGCAGCAACCG+TGG | 0.651015 | 3:-91031500 | None:intergenic |
| GGGACCACCGGAGTTACCTA+GGG | 0.652070 | 3:-91030990 | None:intergenic |
| AGGCGGAGAGCCAGACACGT+TGG | 0.658102 | 3:-91031045 | None:intergenic |
| GAAATTGTAGGTGATTCCAA+GGG | 0.661077 | 3:+91032132 | MsG0380017034.01.T01:intron |
| GCCTATGACACAGAAGAGAG+TGG | 0.662127 | 3:-91031626 | None:intergenic |
| AAATAGAGACGCATTATGAG+GGG | 0.662709 | 3:-91031010 | None:intergenic |
| TTGGATGTATGAGATTGTGA+GGG | 0.669115 | 3:-91031104 | None:intergenic |
| ACCGGCGGTTTCAAGGCAGG+CGG | 0.670453 | 3:-91031062 | None:intergenic |
| GGTGAGGATTCCGACAAAGG+CGG | 0.671382 | 3:-91031230 | None:intergenic |
| TGAGGGGAATGAGCATCAAG+GGG | 0.673773 | 3:-91031087 | None:intergenic |
| GTTGGATGTATGAGATTGTG+AGG | 0.684853 | 3:-91031105 | None:intergenic |
| AGATGGGTCAAACTATAGAG+GGG | 0.703352 | 3:+91032461 | MsG0380017034.01.T01:CDS |
| GCGGCTGCGAAGAAAATAGG+TGG | 0.707986 | 3:-91031211 | None:intergenic |
| GAGCATCAAGGGGAAACCGG+CGG | 0.708380 | 3:-91031077 | None:intergenic |
| TGGATGTATGAGATTGTGAG+GGG | 0.716192 | 3:-91031103 | None:intergenic |
| TTAGCCCTAGGTAACTCCGG+TGG | 0.719716 | 3:+91030986 | MsG0380017034.01.T01:CDS |
| AGAGCAGAAAAGAAGAAACG+TGG | 0.731923 | 3:+91032427 | MsG0380017034.01.T01:CDS |
| CGTCTCTATTTCATCCACGG+TGG | 0.739636 | 3:+91031022 | MsG0380017034.01.T01:CDS |
| GATAGTCGTCAAGACCGGTG+AGG | 0.745103 | 3:-91031246 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GTGAAATTCAATTATATTAT+TGG | - | Chr3:91032665-91032684 | None:intergenic | 15.0% |
| !!! | TACTTTTTTTTAGAAAAAGA+GGG | + | Chr3:91032564-91032583 | MsG0380017034.01.T01:three_prime_UTR | 15.0% |
| !!! | TATTTTCATCTATTTTGTTT+GGG | + | Chr3:91031783-91031802 | MsG0380017034.01.T01:intron | 15.0% |
| !!! | TTACTTTTTTTTAGAAAAAG+AGG | + | Chr3:91032563-91032582 | MsG0380017034.01.T01:three_prime_UTR | 15.0% |
| !! | AACAAAAATCATTTAGTGTT+TGG | - | Chr3:91032055-91032074 | None:intergenic | 20.0% |
| !! | AATTAAAAAAATCACAAGTG+TGG | - | Chr3:91031891-91031910 | None:intergenic | 20.0% |
| !! | AGGTAAGATTACATTAATTA+AGG | + | Chr3:91031671-91031690 | MsG0380017034.01.T01:intron | 20.0% |
| !! | TTATGAAATTCTATGTTGTA+TGG | + | Chr3:91031825-91031844 | MsG0380017034.01.T01:intron | 20.0% |
| !!! | AATAATTGTGATTGAGATTT+TGG | + | Chr3:91032105-91032124 | MsG0380017034.01.T01:intron | 20.0% |
| !!! | ACTTTTTTTTAGAAAAAGAG+GGG | + | Chr3:91032565-91032584 | MsG0380017034.01.T01:three_prime_UTR | 20.0% |
| !!! | ATTAATTAAGGTTGTGTTTT+TGG | + | Chr3:91031683-91031702 | MsG0380017034.01.T01:intron | 20.0% |
| !!! | ATTATATTTAGTTTTTCTGC+AGG | - | Chr3:91031181-91031200 | None:intergenic | 20.0% |
| !!! | CTATTTTCATCTATTTTGTT+TGG | + | Chr3:91031782-91031801 | MsG0380017034.01.T01:intron | 20.0% |
| !!! | TTATATTTAGTTTTTCTGCA+GGG | - | Chr3:91031180-91031199 | None:intergenic | 20.0% |
| ! | AAAAATTCCAAGCAGAAAAA+GGG | + | Chr3:91032341-91032360 | MsG0380017034.01.T01:CDS | 25.0% |
| ! | AATTGAATTTCACTTAAAGC+TGG | + | Chr3:91032672-91032691 | MsG0380017034.01.T01:three_prime_UTR | 25.0% |
| ! | ATAACAAGAGAATAAGTGAT+GGG | - | Chr3:91031577-91031596 | None:intergenic | 25.0% |
| !! | AGAGATTGGATTTTATTAAG+TGG | + | Chr3:91031975-91031994 | MsG0380017034.01.T01:intron | 25.0% |
| !! | GATTGCAAACAATGATTTTA+AGG | + | Chr3:91031651-91031670 | MsG0380017034.01.T01:CDS | 25.0% |
| !!! | GATTTTGGATTTGAAATTGT+AGG | + | Chr3:91032120-91032139 | MsG0380017034.01.T01:intron | 25.0% |
| !!! | TATATTTAGTTTTTCTGCAG+GGG | - | Chr3:91031179-91031198 | None:intergenic | 25.0% |
| AAAATTCCAAGCAGAAAAAG+GGG | + | Chr3:91032342-91032361 | MsG0380017034.01.T01:CDS | 30.0% | |
| AAGCTGAGATGCTATAATTA+AGG | - | Chr3:91031314-91031333 | None:intergenic | 30.0% | |
| AATATTGATCCCAGTAAGTA+TGG | + | Chr3:91032619-91032638 | MsG0380017034.01.T01:three_prime_UTR | 30.0% | |
| CATAACAAGAGAATAAGTGA+TGG | - | Chr3:91031578-91031597 | None:intergenic | 30.0% | |
| CATCACTTATTCTCTTGTTA+TGG | + | Chr3:91031576-91031595 | MsG0380017034.01.T01:CDS | 30.0% | |
| GAAAAATTCCAAGCAGAAAA+AGG | + | Chr3:91032340-91032359 | MsG0380017034.01.T01:CDS | 30.0% | |
| TCTGCAAAACAATATGCAAT+TGG | + | Chr3:91031469-91031488 | MsG0380017034.01.T01:CDS | 30.0% | |
| TGCTATAATTAAGGAAGAAG+TGG | - | Chr3:91031305-91031324 | None:intergenic | 30.0% | |
| TTAATTATAGCATCTCAGCT+TGG | + | Chr3:91031313-91031332 | MsG0380017034.01.T01:CDS | 30.0% | |
| TTGATGCTCAGATATGTAAA+GGG | - | Chr3:91030828-91030847 | None:intergenic | 30.0% | |
| TTTGATCTCTCCATAGAAAT+AGG | - | Chr3:91032401-91032420 | None:intergenic | 30.0% | |
| !!! | TGCAATTGGTTTTTTAACCA+CGG | + | Chr3:91031483-91031502 | MsG0380017034.01.T01:CDS | 30.0% |
| AAATAGAGACGCATTATGAG+GGG | - | Chr3:91031013-91031032 | None:intergenic | 35.0% | |
| AATTGTCTCATATTAGCCCT+AGG | + | Chr3:91030974-91030993 | MsG0380017034.01.T01:CDS | 35.0% | |
| ACGTGGTTTAGAAATAGAGA+TGG | + | Chr3:91032444-91032463 | MsG0380017034.01.T01:CDS | 35.0% | |
| AGTAAGTATGGTTACGGTAT+AGG | + | Chr3:91032631-91032650 | MsG0380017034.01.T01:three_prime_UTR | 35.0% | |
| ATACCGTAACCATACTTACT+GGG | - | Chr3:91032631-91032650 | None:intergenic | 35.0% | |
| ATTAAGGAAGAAGTGGAAAC+TGG | - | Chr3:91031298-91031317 | None:intergenic | 35.0% | |
| CGTGGTTTAGAAATAGAGAT+GGG | + | Chr3:91032445-91032464 | MsG0380017034.01.T01:CDS | 35.0% | |
| CTTGATGCTCAGATATGTAA+AGG | - | Chr3:91030829-91030848 | None:intergenic | 35.0% | |
| GAAATAGAGACGCATTATGA+GGG | - | Chr3:91031014-91031033 | None:intergenic | 35.0% | |
| GAAATTGTAGGTGATTCCAA+GGG | + | Chr3:91032132-91032151 | MsG0380017034.01.T01:intron | 35.0% | |
| GAAGAAAATAGGTGGTTTCA+TGG | - | Chr3:91031206-91031225 | None:intergenic | 35.0% | |
| GGTTTCGTACAATTAGAGAT+TGG | + | Chr3:91031961-91031980 | MsG0380017034.01.T01:intron | 35.0% | |
| GTCACTTGTACTTTCTCTTT+GGG | + | Chr3:91032366-91032385 | MsG0380017034.01.T01:CDS | 35.0% | |
| TAGAGTAGTTGAACCTATGA+AGG | + | Chr3:91032002-91032021 | MsG0380017034.01.T01:intron | 35.0% | |
| TATACCGTAACCATACTTAC+TGG | - | Chr3:91032632-91032651 | None:intergenic | 35.0% | |
| TCACTTGTACTTTCTCTTTG+GGG | + | Chr3:91032367-91032386 | MsG0380017034.01.T01:CDS | 35.0% | |
| TCCAACAGTAAGCAAAACAA+TGG | - | Chr3:91031401-91031420 | None:intergenic | 35.0% | |
| TCTCTTCTTTGTCACTACTT+TGG | - | Chr3:91030877-91030896 | None:intergenic | 35.0% | |
| TGAAATAGAGACGCATTATG+AGG | - | Chr3:91031015-91031034 | None:intergenic | 35.0% | |
| TGAAATTGTAGGTGATTCCA+AGG | + | Chr3:91032131-91032150 | MsG0380017034.01.T01:intron | 35.0% | |
| TGAGACAATTTACGATGAGA+AGG | - | Chr3:91030964-91030983 | None:intergenic | 35.0% | |
| TTGGATGTATGAGATTGTGA+GGG | - | Chr3:91031107-91031126 | None:intergenic | 35.0% | |
| TTGTGCTTCATCGTTATTGT+CGG | + | Chr3:91032258-91032277 | MsG0380017034.01.T01:CDS | 35.0% | |
| ! | TGGCTTTTAATGCGTTAATG+TGG | + | Chr3:91032200-91032219 | MsG0380017034.01.T01:CDS | 35.0% |
| ! | TGTCACTTGTACTTTCTCTT+TGG | + | Chr3:91032365-91032384 | MsG0380017034.01.T01:CDS | 35.0% |
| AAGCACTTACTATGTTGTGC+TGG | + | Chr3:91032180-91032199 | MsG0380017034.01.T01:CDS | 40.0% | |
| AGAGATGGGTCAAACTATAG+AGG | + | Chr3:91032459-91032478 | MsG0380017034.01.T01:CDS | 40.0% | |
| AGAGCAGAAAAGAAGAAACG+TGG | + | Chr3:91032427-91032446 | MsG0380017034.01.T01:CDS | 40.0% | |
| AGATGGGTCAAACTATAGAG+GGG | + | Chr3:91032461-91032480 | MsG0380017034.01.T01:CDS | 40.0% | |
| ATATTAGCCCTAGGTAACTC+CGG | + | Chr3:91030983-91031002 | MsG0380017034.01.T01:CDS | 40.0% | |
| ATGCGTCTCTATTTCATCCA+CGG | + | Chr3:91031019-91031038 | MsG0380017034.01.T01:CDS | 40.0% | |
| CACTTGTACTTTCTCTTTGG+GGG | + | Chr3:91032368-91032387 | MsG0380017034.01.T01:CDS | 40.0% | |
| GACGACTATCTATACGCATA+TGG | + | Chr3:91031259-91031278 | MsG0380017034.01.T01:CDS | 40.0% | |
| GAGATGGGTCAAACTATAGA+GGG | + | Chr3:91032460-91032479 | MsG0380017034.01.T01:CDS | 40.0% | |
| GATCCCAGTAAGTATGGTTA+CGG | + | Chr3:91032625-91032644 | MsG0380017034.01.T01:three_prime_UTR | 40.0% | |
| GTATAGATAGTCGTCAAGAC+CGG | - | Chr3:91031254-91031273 | None:intergenic | 40.0% | |
| GTTGGATGTATGAGATTGTG+AGG | - | Chr3:91031108-91031127 | None:intergenic | 40.0% | |
| TACACCCTACATTCCAATCA+CGG | - | Chr3:91032496-91032515 | None:intergenic | 40.0% | |
| TAGAAGAGAGTCTCCTTCAT+AGG | - | Chr3:91032018-91032037 | None:intergenic | 40.0% | |
| TGGATGTATGAGATTGTGAG+GGG | - | Chr3:91031106-91031125 | None:intergenic | 40.0% | |
| TGTGCTTCATCGTTATTGTC+GGG | + | Chr3:91032259-91032278 | MsG0380017034.01.T01:CDS | 40.0% | |
| TTATAAACCAACTCAACCGC+AGG | - | Chr3:91031541-91031560 | None:intergenic | 40.0% | |
| TTCTCCTAGCCCAAAATTTC+TGG | - | Chr3:91032161-91032180 | None:intergenic | 40.0% | |
| ! | AATGTGGCAAGCGTTTTTCT+TGG | + | Chr3:91032216-91032235 | MsG0380017034.01.T01:CDS | 40.0% |
| ! | ACGTTTCTTCTTTTCTGCTC+TGG | - | Chr3:91032428-91032447 | None:intergenic | 40.0% |
| ! | ATGTGGCAAGCGTTTTTCTT+GGG | + | Chr3:91032217-91032236 | MsG0380017034.01.T01:CDS | 40.0% |
| ! | CAAGGGAAGCCAGAAATTTT+GGG | + | Chr3:91032149-91032168 | MsG0380017034.01.T01:CDS | 40.0% |
| ! | TGCTGTGTTGTTACCACTAA+CGG | + | Chr3:91032291-91032310 | MsG0380017034.01.T01:CDS | 40.0% |
| !! | GCCATTGTTTTGCTTACTGT+TGG | + | Chr3:91031397-91031416 | MsG0380017034.01.T01:CDS | 40.0% |
| !! | GGGTTTGTGTCCTATTTCTA+TGG | + | Chr3:91032388-91032407 | MsG0380017034.01.T01:CDS | 40.0% |
| !! | TCACAAGTGTGGTGTTGTAT+CGG | - | Chr3:91031880-91031899 | None:intergenic | 40.0% |
| !!! | GTATGGATTTGTTTTGCCTG+CGG | + | Chr3:91031522-91031541 | MsG0380017034.01.T01:CDS | 40.0% |
| AATGAGCATCAAGGGGAAAC+CGG | - | Chr3:91031083-91031102 | None:intergenic | 45.0% | |
| AGCATCTCAGCTTGGTTTCA+CGG | + | Chr3:91031321-91031340 | MsG0380017034.01.T01:CDS | 45.0% | |
| AGTATGGTTACGGTATAGGC+AGG | + | Chr3:91032635-91032654 | MsG0380017034.01.T01:three_prime_UTR | 45.0% | |
| GAACAGAGAGAACACACACA+TGG | + | Chr3:91030895-91030914 | MsG0380017034.01.T01:exon | 45.0% | |
| GAGAACACACACATGGAAGA+AGG | + | Chr3:91030902-91030921 | MsG0380017034.01.T01:exon | 45.0% | |
| TATACGCATATGGCGTTGCT+CGG | + | Chr3:91031269-91031288 | MsG0380017034.01.T01:CDS | 45.0% | |
| TGCTCCGTGATTGGAATGTA+GGG | + | Chr3:91032489-91032508 | MsG0380017034.01.T01:exon | 45.0% | |
| ! | CCAAGGGAAGCCAGAAATTT+TGG | + | Chr3:91032148-91032167 | MsG0380017034.01.T01:CDS | 45.0% |
| ! | GAAGCCAGAAATTTTGGGCT+AGG | + | Chr3:91032154-91032173 | MsG0380017034.01.T01:CDS | 45.0% |
| ! | GCGTTTTTCTTGGGAGCTAT+TGG | + | Chr3:91032226-91032245 | MsG0380017034.01.T01:CDS | 45.0% |
| ! | GTTACCACTAACGGAAGTGT+TGG | + | Chr3:91032300-91032319 | MsG0380017034.01.T01:CDS | 45.0% |
| ! | GTTGCTGCTTCTGCATTGTA+TGG | + | Chr3:91031505-91031524 | MsG0380017034.01.T01:CDS | 45.0% |
| ! | GTTTTGCTTACTGTTGGAGC+TGG | + | Chr3:91031403-91031422 | MsG0380017034.01.T01:CDS | 45.0% |
| ! | TACTGTTGGAGCTGGTGTTT+TGG | + | Chr3:91031411-91031430 | MsG0380017034.01.T01:CDS | 45.0% |
| ! | TAGTTTTTCTGCAGGGGAGA+TGG | - | Chr3:91031173-91031192 | None:intergenic | 45.0% |
| ! | TGTTTTGCAGAAACACCAGC+AGG | - | Chr3:91031460-91031479 | None:intergenic | 45.0% |
| !! | CCAAAATTTCTGGCTTCCCT+TGG | - | Chr3:91032151-91032170 | None:intergenic | 45.0% |
| AAGGCGGCTGCGAAGAAAAT+AGG | - | Chr3:91031217-91031236 | None:intergenic | 50.0% | |
| ACTGCCAACACTTCCGTTAG+TGG | - | Chr3:91032307-91032326 | None:intergenic | 50.0% | |
| CGAAACCTAGACCTAGACAC+CGG | - | Chr3:91031948-91031967 | None:intergenic | 50.0% | |
| CGTCTCTATTTCATCCACGG+TGG | + | Chr3:91031022-91031041 | MsG0380017034.01.T01:CDS | 50.0% | |
| CTACATTCCAATCACGGAGC+AGG | - | Chr3:91032490-91032509 | None:intergenic | 50.0% | |
| CTGCTCCGTGATTGGAATGT+AGG | + | Chr3:91032488-91032507 | MsG0380017034.01.T01:exon | 50.0% | |
| GAAACCTAGACCTAGACACC+GGG | - | Chr3:91031947-91031966 | None:intergenic | 50.0% | |
| GCCACTCTCTTCTGTGTCAT+AGG | + | Chr3:91031625-91031644 | MsG0380017034.01.T01:CDS | 50.0% | |
| GCCTATGACACAGAAGAGAG+TGG | - | Chr3:91031629-91031648 | None:intergenic | 50.0% | |
| GTGAGGGGAATGAGCATCAA+GGG | - | Chr3:91031091-91031110 | None:intergenic | 50.0% | |
| TCACATGTTAGTGTCGTGCC+CGG | + | Chr3:91031926-91031945 | MsG0380017034.01.T01:intron | 50.0% | |
| TGAGGGGAATGAGCATCAAG+GGG | - | Chr3:91031090-91031109 | None:intergenic | 50.0% | |
| TGTGAGGGGAATGAGCATCA+AGG | - | Chr3:91031092-91031111 | None:intergenic | 50.0% | |
| ! | GTGACACCCCTTTTTCTGCT+TGG | - | Chr3:91032351-91032370 | None:intergenic | 50.0% |
| ! | TGTTTTGCCTGCGGTTGAGT+TGG | + | Chr3:91031531-91031550 | MsG0380017034.01.T01:CDS | 50.0% |
| !! | TGTGGTGTTGTATCGGACAC+TGG | - | Chr3:91031873-91031892 | None:intergenic | 50.0% |
| ACCGGTGAGGATTCCGACAA+AGG | - | Chr3:91031236-91031255 | None:intergenic | 55.0% | |
| ACGAGTAGTGATCGTCCTGC+TGG | + | Chr3:91031442-91031461 | MsG0380017034.01.T01:CDS | 55.0% | |
| ACGCATTATGAGGGGACCAC+CGG | - | Chr3:91031005-91031024 | None:intergenic | 55.0% | |
| CAATGCAGAAGCAGCAACCG+TGG | - | Chr3:91031503-91031522 | None:intergenic | 55.0% | |
| GATAGTCGTCAAGACCGGTG+AGG | - | Chr3:91031249-91031268 | None:intergenic | 55.0% | |
| GCCTTTGTCGGAATCCTCAC+CGG | + | Chr3:91031232-91031251 | MsG0380017034.01.T01:CDS | 55.0% | |
| GCGGCTGCGAAGAAAATAGG+TGG | - | Chr3:91031214-91031233 | None:intergenic | 55.0% | |
| GGTGAGGATTCCGACAAAGG+CGG | - | Chr3:91031233-91031252 | None:intergenic | 55.0% | |
| TTAGCCCTAGGTAACTCCGG+TGG | + | Chr3:91030986-91031005 | MsG0380017034.01.T01:CDS | 55.0% | |
| TTCTGCAGGGGAGATGGAGA+TGG | - | Chr3:91031167-91031186 | None:intergenic | 55.0% | |
| TTCTTCGCAGCCGCCTTTGT+CGG | + | Chr3:91031220-91031239 | MsG0380017034.01.T01:CDS | 55.0% | |
| !! | ATGGAGATGGTGGTGGATGG+TGG | - | Chr3:91031154-91031173 | None:intergenic | 55.0% |
| !! | GAGATGGAGATGGTGGTGGA+TGG | - | Chr3:91031157-91031176 | None:intergenic | 55.0% |
| AGGGGAAACCGGCGGTTTCA+AGG | - | Chr3:91031072-91031091 | None:intergenic | 60.0% | |
| GAAACCGGCGGTTTCAAGGC+AGG | - | Chr3:91031068-91031087 | None:intergenic | 60.0% | |
| GAGCATCAAGGGGAAACCGG+CGG | - | Chr3:91031080-91031099 | None:intergenic | 60.0% | |
| GGGACCACCGGAGTTACCTA+GGG | - | Chr3:91030993-91031012 | None:intergenic | 60.0% | |
| TAGTGTCGTGCCCGGTGTCT+AGG | + | Chr3:91031934-91031953 | MsG0380017034.01.T01:intron | 60.0% | |
| TGCAGGGGAGATGGAGATGG+TGG | - | Chr3:91031164-91031183 | None:intergenic | 60.0% | |
| ! | AGGGGAGATGGAGATGGTGG+TGG | - | Chr3:91031161-91031180 | None:intergenic | 60.0% |
| !! | GAGATGGTGGTGGATGGTGG+AGG | - | Chr3:91031151-91031170 | None:intergenic | 60.0% |
| !! | TGGATGGTGGAGGATGGTGG+CGG | - | Chr3:91031141-91031160 | None:intergenic | 60.0% |
| !! | TGGTGGATGGTGGAGGATGG+TGG | - | Chr3:91031144-91031163 | None:intergenic | 60.0% |
| !! | TGGTGGTGGATGGTGGAGGA+TGG | - | Chr3:91031147-91031166 | None:intergenic | 60.0% |
| ACCGGCGGTTTCAAGGCAGG+CGG | - | Chr3:91031065-91031084 | None:intergenic | 65.0% | |
| AGGCGGAGAGCCAGACACGT+TGG | - | Chr3:91031048-91031067 | None:intergenic | 65.0% | |
| CGTGCCCGGTGTCTAGGTCT+AGG | + | Chr3:91031940-91031959 | MsG0380017034.01.T01:intron | 65.0% | |
| GGGGACCACCGGAGTTACCT+AGG | - | Chr3:91030994-91031013 | None:intergenic | 65.0% | |
| GGGGCTACCTGCTCCGTGAT+TGG | + | Chr3:91032480-91032499 | MsG0380017034.01.T01:exon | 65.0% | |
| TCCACGGTGGCCAACGTGTC+TGG | + | Chr3:91031035-91031054 | MsG0380017034.01.T01:CDS | 65.0% | |
| TCCGCCTGCCTTGAAACCGC+CGG | + | Chr3:91031061-91031080 | MsG0380017034.01.T01:CDS | 65.0% | |
| !! | GTGGAGGATGGTGGCGGTGA+CGG | - | Chr3:91031135-91031154 | None:intergenic | 65.0% |
| GCCAGACACGTTGGCCACCG+TGG | - | Chr3:91031039-91031058 | None:intergenic | 70.0% | |
| ! | GGTGGCGGTGACGGCAGCGT+TGG | - | Chr3:91031126-91031145 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr3 | gene | 91030823 | 91032739 | 91030823 | ID=MsG0380017034.01;Name=MsG0380017034.01 |
| Chr3 | mRNA | 91030823 | 91032739 | 91030823 | ID=MsG0380017034.01.T01;Parent=MsG0380017034.01;Name=MsG0380017034.01.T01;_AED=0.38;_eAED=0.38;_QI=91|1|1|1|1|1|2|241|371 |
| Chr3 | exon | 91030823 | 91031672 | 91030823 | ID=MsG0380017034.01.T01:exon:20601;Parent=MsG0380017034.01.T01 |
| Chr3 | exon | 91032142 | 91032739 | 91032142 | ID=MsG0380017034.01.T01:exon:20602;Parent=MsG0380017034.01.T01 |
| Chr3 | five_prime_UTR | 91030823 | 91030913 | 91030823 | ID=MsG0380017034.01.T01:five_prime_utr;Parent=MsG0380017034.01.T01 |
| Chr3 | CDS | 91030914 | 91031672 | 91030914 | ID=MsG0380017034.01.T01:cds;Parent=MsG0380017034.01.T01 |
| Chr3 | CDS | 91032142 | 91032498 | 91032142 | ID=MsG0380017034.01.T01:cds;Parent=MsG0380017034.01.T01 |
| Chr3 | three_prime_UTR | 91032499 | 91032739 | 91032499 | ID=MsG0380017034.01.T01:three_prime_utr;Parent=MsG0380017034.01.T01 |
| Gene Sequence |
| Protein sequence |
