AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0580027899.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580027899.01.T01 MTR_5g065080 98.907 366 2 1 1 366 1 364 0.0 730
MsG0580027899.01.T01 MTR_3g099740 63.760 367 123 4 7 365 4 368 3.58e-169 476
MsG0580027899.01.T01 MTR_3g099750 61.096 365 132 4 9 365 5 367 1.45e-160 455
MsG0580027899.01.T01 MTR_2g437590 36.517 356 200 7 12 358 65 403 3.62e-70 226
MsG0580027899.01.T01 MTR_2g015470 33.134 335 216 2 22 356 44 370 1.49e-58 194
MsG0580027899.01.T01 MTR_4g098900 33.828 337 197 5 27 360 42 355 6.97e-57 191
MsG0580027899.01.T01 MTR_3g058660 33.333 360 225 5 12 366 7 356 2.59e-56 188
MsG0580027899.01.T01 MTR_2g437580 34.891 321 188 7 41 355 72 377 9.17e-53 179
MsG0580027899.01.T01 MTR_8g024620 32.344 337 201 3 20 350 42 357 4.29e-52 177
MsG0580027899.01.T01 MTR_8g024620 32.344 337 201 3 20 350 53 368 4.75e-52 177
MsG0580027899.01.T01 MTR_8g024620 32.344 337 201 3 20 350 54 369 4.87e-52 177
MsG0580027899.01.T01 MTR_7g080750 31.195 343 210 5 14 355 23 340 7.43e-47 163
MsG0580027899.01.T01 MTR_6g082540 32.653 147 99 0 198 344 5 151 1.07e-22 94.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580027899.01.T01 AT2G33750 58.721 344 135 2 17 360 3 339 4.00e-141 404
MsG0580027899.01.T01 AT1G28220 55.490 337 143 2 17 353 1 330 6.27e-138 397
MsG0580027899.01.T01 AT2G33750 56.901 355 135 3 17 360 3 350 1.83e-137 395
MsG0580027899.01.T01 AT1G28230 58.621 348 138 3 17 359 1 347 1.15e-135 391
MsG0580027899.01.T01 AT4G18220 35.404 322 194 5 41 361 66 374 2.03e-56 189
MsG0580027899.01.T01 AT4G18210 32.964 361 221 5 7 361 31 376 1.07e-52 179
MsG0580027899.01.T01 AT4G18205 34.891 321 192 4 41 357 61 368 2.71e-51 175
MsG0580027899.01.T01 AT4G18197 32.722 327 203 4 41 363 64 377 8.37e-46 161
MsG0580027899.01.T01 AT1G30840 33.923 339 206 6 8 342 12 336 2.58e-45 160
MsG0580027899.01.T01 AT1G30840 33.923 339 206 6 8 342 12 336 2.58e-45 160
MsG0580027899.01.T01 AT1G44750 32.231 363 224 6 3 355 6 356 2.94e-44 157
MsG0580027899.01.T01 AT1G44750 32.231 363 224 6 3 355 6 356 2.94e-44 157
MsG0580027899.01.T01 AT1G44750 32.231 363 224 6 3 355 18 368 4.67e-44 156
MsG0580027899.01.T01 AT4G18195 32.492 317 201 3 41 355 67 372 7.19e-44 156
MsG0580027899.01.T01 AT1G44750 35.600 250 159 2 107 355 44 292 5.27e-43 152
MsG0580027899.01.T01 AT1G44750 35.600 250 159 2 107 355 44 292 5.27e-43 152
MsG0580027899.01.T01 AT1G44750 35.600 250 159 2 107 355 44 292 5.27e-43 152
MsG0580027899.01.T01 AT1G44750 35.600 250 159 2 107 355 44 292 5.27e-43 152
MsG0580027899.01.T01 AT1G44750 35.600 250 159 2 107 355 44 292 5.27e-43 152
MsG0580027899.01.T01 AT4G18190 32.329 365 228 6 3 361 20 371 2.82e-42 152
MsG0580027899.01.T01 AT2G24220 33.535 331 205 3 7 337 25 340 4.59e-41 148
MsG0580027899.01.T01 AT2G24220 33.535 331 205 3 7 337 43 358 5.32e-41 148
MsG0580027899.01.T01 AT4G08700 27.246 345 235 4 14 357 30 359 2.27e-36 135
MsG0580027899.01.T01 AT5G41160 26.776 366 243 7 5 357 9 362 9.50e-35 131
MsG0580027899.01.T01 AT1G19770 27.419 310 207 5 51 349 88 390 1.41e-24 103
MsG0580027899.01.T01 AT1G57943 28.788 330 204 10 49 365 84 395 7.92e-24 102
MsG0580027899.01.T01 AT1G57943 28.788 330 204 10 49 365 85 396 1.00e-23 101
MsG0580027899.01.T01 AT1G57980 28.012 332 203 9 49 365 82 392 4.90e-21 94.0
MsG0580027899.01.T01 AT1G57990 26.140 329 213 9 49 365 78 388 4.99e-20 90.9
MsG0580027899.01.T01 AT1G47603 26.879 346 215 10 26 350 53 381 6.01e-18 84.7
MsG0580027899.01.T01 AT1G09860 27.928 333 197 14 49 357 69 382 8.70e-15 75.5
MsG0580027899.01.T01 AT1G75470 20.902 244 179 4 124 355 144 385 1.70e-12 68.6

Find 77 sgRNAs with CRISPR-Local

Find 140 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCTTTGGTGCTCTCACTTT+GGG 0.109096 5:+70657901 MsG0580027899.01.T01:CDS
GTTAAGGGAATGAGAATTAT+TGG 0.202075 5:-70656046 None:intergenic
TGTTGTTGCCGTTAGGGTTT+TGG 0.275520 5:-70656105 None:intergenic
TGTGCCTCTTCATTGCTATC+TGG 0.289354 5:+70657794 MsG0580027899.01.T01:CDS
GACCCTTGGGAGTGTTGTTT+TGG 0.297124 5:+70656354 MsG0580027899.01.T01:CDS
AACAGCTAAGATTTCAGTTA+TGG 0.309424 5:-70657840 None:intergenic
TTGGCTTCTGCTGCTTTGTA+TGG 0.317318 5:+70656451 MsG0580027899.01.T01:CDS
TATTACTTATTCTCTTGTTA+TGG 0.319523 5:+70656522 MsG0580027899.01.T01:CDS
TTGCTTTGGTGCTCTCACTT+TGG 0.319968 5:+70657900 MsG0580027899.01.T01:CDS
GGATTGAGTTTAGTATTAGA+AGG 0.332698 5:-70655919 None:intergenic
TCAACTAAGGATTATGTGAT+TGG 0.365760 5:+70656415 MsG0580027899.01.T01:CDS
AGCAGAGAAAGGGGTTGCTT+TGG 0.380450 5:+70657886 MsG0580027899.01.T01:CDS
TTATTATTGTTGTTGCCGTT+AGG 0.386452 5:-70656112 None:intergenic
TTGTGGTCATTCCTCAAGTT+GGG 0.393893 5:-70658095 None:intergenic
ACAGCTAAGATTTCAGTTAT+GGG 0.401537 5:-70657839 None:intergenic
TTAAGGGAATGAGAATTATT+GGG 0.403587 5:-70656045 None:intergenic
AACGGTAACGGTAACGGTTG+TGG 0.403687 5:-70656081 None:intergenic
AGAAATTTCAAGCAGAGAAA+GGG 0.404504 5:+70657876 MsG0580027899.01.T01:CDS
TATTATTGTTGTTGCCGTTA+GGG 0.409224 5:-70656111 None:intergenic
ACCACCTTTGTTTATCGCTT+CGG 0.421218 5:+70656153 MsG0580027899.01.T01:CDS
GAGAAATTTCAAGCAGAGAA+AGG 0.424086 5:+70657875 MsG0580027899.01.T01:CDS
TTTGTGGTCATTCCTCAAGT+TGG 0.431393 5:-70658096 None:intergenic
TTGAAATCCCTTGCTTCCCT+TGG 0.436924 5:-70657683 None:intergenic
GAAGCAAGGGATTTCAAGCT+TGG 0.447995 5:+70657689 MsG0580027899.01.T01:CDS
ATTATTCTTTCCACCATGGC+TGG 0.459579 5:-70655854 None:intergenic
GCCATACACGTTTGCCGCCA+TGG 0.460981 5:-70655994 None:intergenic
AAGCAAGGGATTTCAAGCTT+GGG 0.461079 5:+70657690 MsG0580027899.01.T01:CDS
TCCATGGCGGCAAACGTGTA+TGG 0.467259 5:+70655993 MsG0580027899.01.T01:CDS
GTGATTGAATGAAGACTTTG+AGG 0.480812 5:-70657992 None:intergenic
TTGGGAAGGCAGATGTTTCA+AGG 0.487413 5:-70656027 None:intergenic
CGATTTCGCAGGTGATTCCA+AGG 0.488583 5:+70657666 MsG0580027899.01.T01:intron
TGGTCCACCACATGTTCCTA+TGG 0.488999 5:-70655948 None:intergenic
ACTTGTTGGTGAGTCAACTA+AGG 0.493336 5:+70656402 MsG0580027899.01.T01:CDS
GTGGATGTGAGAAATGGTTA+AGG 0.494562 5:-70656062 None:intergenic
GCTAATTATTCTTTCCACCA+TGG 0.494814 5:-70655858 None:intergenic
GATGGTGGAGATAGACTTGT+TGG 0.502081 5:+70656388 MsG0580027899.01.T01:CDS
TTTATCGCTTCGGCAGTCAT+CGG 0.508139 5:+70656163 MsG0580027899.01.T01:CDS
CACATGTTCCTATGGCTAAG+AGG 0.511689 5:-70655940 None:intergenic
TTTGGTAACGGTAACGGTAA+CGG 0.513127 5:-70656087 None:intergenic
AGCAAATAATTAACCAGCCA+TGG 0.520477 5:+70655841 MsG0580027899.01.T01:exon
GTAGAGGTAGTCGTCTAAAC+CGG 0.524198 5:-70656194 None:intergenic
TTATAAACCAACTCCAACAA+CGG 0.529943 5:-70656484 None:intergenic
ACGGTTGTGGATGTGAGAAA+TGG 0.530168 5:-70656068 None:intergenic
GAAATTTCAAGCAGAGAAAG+GGG 0.546511 5:+70657877 MsG0580027899.01.T01:CDS
GCTTTGGTGCTCTCACTTTG+GGG 0.547915 5:+70657902 MsG0580027899.01.T01:CDS
TGGATGTGAGAAATGGTTAA+GGG 0.553222 5:-70656061 None:intergenic
AGGTGATTCCAAGGGAAGCA+AGG 0.563127 5:+70657675 MsG0580027899.01.T01:intron
TTAATTATTTGCTAGAGTAG+AGG 0.564550 5:-70655831 None:intergenic
CGGTAGACGCTTTATGCCGC+AGG 0.567407 5:-70656218 None:intergenic
CTGCGGCATAAAGCGTCTAC+CGG 0.571271 5:+70656219 MsG0580027899.01.T01:CDS
GCAGTCATCGGAGTTCTCAC+CGG 0.580044 5:+70656175 MsG0580027899.01.T01:CDS
AGCAAGGGATTTCAAGCTTG+GGG 0.584822 5:+70657691 MsG0580027899.01.T01:CDS
AGTACTATGTTGTGCTAGTG+TGG 0.588131 5:+70657720 MsG0580027899.01.T01:CDS
CTCTTAGCCATAGGAACATG+TGG 0.591598 5:+70655941 MsG0580027899.01.T01:CDS
CTAGCTTTGTACCCAACTTG+AGG 0.592540 5:+70658084 MsG0580027899.01.T01:three_prime_UTR
AATGCCAGATAGCAATGAAG+AGG 0.600270 5:-70657798 None:intergenic
AACTCAATCCTCTTAGCCAT+AGG 0.604730 5:+70655932 MsG0580027899.01.T01:CDS
ATGCGTCTATACTTCATCCA+TGG 0.605124 5:+70655977 MsG0580027899.01.T01:CDS
GTGCCAAAACAACACTCCCA+AGG 0.608152 5:-70656357 None:intergenic
TGCCAAAACAACACTCCCAA+GGG 0.608894 5:-70656356 None:intergenic
GGGAATGAGAATTATTGGGA+AGG 0.610936 5:-70656041 None:intergenic
TACCGTTACCAAAACCCTAA+CGG 0.615357 5:+70656097 MsG0580027899.01.T01:CDS
GGTGATTCCAAGGGAAGCAA+GGG 0.617537 5:+70657676 MsG0580027899.01.T01:intron
CGCGGTGAAAGCTAAGTGTG+AGG 0.632940 5:-70656266 None:intergenic
AAGTATAGACGCATTACTAG+TGG 0.634156 5:-70655968 None:intergenic
GCTTTATGCCGCAGGCGTAG+AGG 0.652914 5:-70656210 None:intergenic
TTGGCACTGAATTCTGATGG+TGG 0.661099 5:+70656373 MsG0580027899.01.T01:CDS
GATTTCGCAGGTGATTCCAA+GGG 0.661936 5:+70657667 MsG0580027899.01.T01:intron
GACGACTACCTCTACGCCTG+CGG 0.669034 5:+70656202 MsG0580027899.01.T01:CDS
TTAGCCATAGGAACATGTGG+TGG 0.677866 5:+70655944 MsG0580027899.01.T01:CDS
AAATAATTAACCAGCCATGG+TGG 0.679882 5:+70655844 MsG0580027899.01.T01:exon
ACTGCCGAAGCGATAAACAA+AGG 0.695167 5:-70656157 None:intergenic
ATTAACGAAGAAGTTGACAC+CGG 0.698512 5:-70656238 None:intergenic
GCCGAAGCGATAAACAAAGG+TGG 0.698965 5:-70656154 None:intergenic
CGTCTATACTTCATCCATGG+CGG 0.706082 5:+70655980 MsG0580027899.01.T01:CDS
TAGTGTGGAGTGCTATAATG+TGG 0.749239 5:+70657735 MsG0580027899.01.T01:CDS
CTCACACTTAGCTTTCACCG+CGG 0.755684 5:+70656267 MsG0580027899.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAAAATAGAATTAGAATA+AGG + Chr5:70657085-70657104 MsG0580027899.01.T01:intron 10.0%
!! ATTAATAATTCAATATCAAT+GGG - Chr5:70657172-70657191 None:intergenic 10.0%
!!! ATATAAAACATTTTTTCTAT+TGG + Chr5:70657441-70657460 MsG0580027899.01.T01:intron 10.0%
!!! ATTCTAATTCTATTTTATTT+TGG - Chr5:70657084-70657103 None:intergenic 10.0%
!!! TAAATTTCTTTTAATTCTAT+TGG + Chr5:70657347-70657366 MsG0580027899.01.T01:intron 10.0%
!!! TTTCTTTTAATTCTTTATTT+AGG + Chr5:70657321-70657340 MsG0580027899.01.T01:intron 10.0%
!! AAAAATGAAAAATAGAGAAA+TGG + Chr5:70657964-70657983 MsG0580027899.01.T01:CDS 15.0%
!! CATTAATAATTCAATATCAA+TGG - Chr5:70657173-70657192 None:intergenic 15.0%
!! GTAATAAATAATTTCTCTAT+TGG - Chr5:70657627-70657646 None:intergenic 15.0%
!! TTAGATTTATTTATTGTATG+TGG - Chr5:70656880-70656899 None:intergenic 15.0%
!!! TTTTTTTTTAGATAACAAGA+GGG + Chr5:70657546-70657565 MsG0580027899.01.T01:intron 15.0%
!!! TTTTTTTTTTAGATAACAAG+AGG + Chr5:70657545-70657564 MsG0580027899.01.T01:intron 15.0%
!! AAACTTAAAACCTAAATTGT+GGG - Chr5:70657304-70657323 None:intergenic 20.0%
!! AATAAAAAGAGAGCAATATT+CGG - Chr5:70657129-70657148 None:intergenic 20.0%
!! ACCAAATAGAAAAATAGAAT+TGG - Chr5:70657382-70657401 None:intergenic 20.0%
!! ATAGTAGAATTAGAATATTG+TGG + Chr5:70657056-70657075 MsG0580027899.01.T01:intron 20.0%
!! CTAAGAATAGTTATTACATT+TGG + Chr5:70657228-70657247 MsG0580027899.01.T01:intron 20.0%
!! TATTACTTATTCTCTTGTTA+TGG + Chr5:70656522-70656541 MsG0580027899.01.T01:CDS 20.0%
!!! ACCAATTCTATTTTTCTATT+TGG + Chr5:70657378-70657397 MsG0580027899.01.T01:intron 20.0%
!!! TTTTGAATTGTCAATATTGT+AGG + Chr5:70658061-70658080 MsG0580027899.01.T01:three_prime_UTR 20.0%
!!! TTTTTATTTCTCAAAACTTG+TGG + Chr5:70657141-70657160 MsG0580027899.01.T01:intron 20.0%
!!! TTTTTGTTTATAAGAGTGAT+TGG - Chr5:70656806-70656825 None:intergenic 20.0%
! AATCCTTACGTAAATTGAAT+TGG - Chr5:70657268-70657287 None:intergenic 25.0%
! ATAAAAAGAGAGCAATATTC+GGG - Chr5:70657128-70657147 None:intergenic 25.0%
! ATTCCAATTCAATTTACGTA+AGG + Chr5:70657262-70657281 MsG0580027899.01.T01:intron 25.0%
! GAAACTTAAAACCTAAATTG+TGG - Chr5:70657305-70657324 None:intergenic 25.0%
! TTAAGGGAATGAGAATTATT+GGG - Chr5:70656048-70656067 None:intergenic 25.0%
!! CAAAATGTCTTAATCTTTTG+TGG - Chr5:70658115-70658134 None:intergenic 25.0%
!! GATCATAGACAATGATTTTA+AGG + Chr5:70656597-70656616 MsG0580027899.01.T01:CDS 25.0%
!! TTAATTATTTGCTAGAGTAG+AGG - Chr5:70655834-70655853 None:intergenic 25.0%
!!! GATTGGTTTTGTTATGATAT+TGG + Chr5:70656432-70656451 MsG0580027899.01.T01:CDS 25.0%
!!! GTAACGATGTTATTTTTGTT+TGG + Chr5:70658025-70658044 MsG0580027899.01.T01:three_prime_UTR 25.0%
AACAGCTAAGATTTCAGTTA+TGG - Chr5:70657843-70657862 None:intergenic 30.0%
AATTGTGAGTGTACAAAGTA+TGG - Chr5:70656664-70656683 None:intergenic 30.0%
ACAGCTAAGATTTCAGTTAT+GGG - Chr5:70657842-70657861 None:intergenic 30.0%
AGAAATTTCAAGCAGAGAAA+GGG + Chr5:70657876-70657895 MsG0580027899.01.T01:CDS 30.0%
CTATTCTTAGATTCAATACG+TGG - Chr5:70657218-70657237 None:intergenic 30.0%
GGATTGAGTTTAGTATTAGA+AGG - Chr5:70655922-70655941 None:intergenic 30.0%
GTTAAGGGAATGAGAATTAT+TGG - Chr5:70656049-70656068 None:intergenic 30.0%
TAAAAAGAGAGCAATATTCG+GGG - Chr5:70657127-70657146 None:intergenic 30.0%
TCAACTAAGGATTATGTGAT+TGG + Chr5:70656415-70656434 MsG0580027899.01.T01:CDS 30.0%
TGTTTATAAGAGTGATTGGA+GGG - Chr5:70656802-70656821 None:intergenic 30.0%
TTATAAACCAACTCCAACAA+CGG - Chr5:70656487-70656506 None:intergenic 30.0%
TTGTTTATAAGAGTGATTGG+AGG - Chr5:70656803-70656822 None:intergenic 30.0%
! ATGTGGCAATTTTTCTTCTT+AGG + Chr5:70657752-70657771 MsG0580027899.01.T01:CDS 30.0%
! CATTCTAAAGACACACTTAA+TGG - Chr5:70656983-70657002 None:intergenic 30.0%
! TATTATTGTTGTTGCCGTTA+GGG - Chr5:70656114-70656133 None:intergenic 30.0%
! TTATTATTGTTGTTGCCGTT+AGG - Chr5:70656115-70656134 None:intergenic 30.0%
AAAAAGAGAGCAATATTCGG+GGG - Chr5:70657126-70657145 None:intergenic 35.0%
AAATAATTAACCAGCCATGG+TGG + Chr5:70655844-70655863 MsG0580027899.01.T01:exon 35.0%
AAGTATAGACGCATTACTAG+TGG - Chr5:70655971-70655990 None:intergenic 35.0%
AGCAAATAATTAACCAGCCA+TGG + Chr5:70655841-70655860 MsG0580027899.01.T01:exon 35.0%
ATTAACGAAGAAGTTGACAC+CGG - Chr5:70656241-70656260 None:intergenic 35.0%
CAATCTTAGTCCCACAATTT+AGG + Chr5:70657291-70657310 MsG0580027899.01.T01:intron 35.0%
CTAAATTGTGGGACTAAGAT+TGG - Chr5:70657293-70657312 None:intergenic 35.0%
GAAATTTCAAGCAGAGAAAG+GGG + Chr5:70657877-70657896 MsG0580027899.01.T01:CDS 35.0%
GAGAAATTTCAAGCAGAGAA+AGG + Chr5:70657875-70657894 MsG0580027899.01.T01:CDS 35.0%
GCTAATTATTCTTTCCACCA+TGG - Chr5:70655861-70655880 None:intergenic 35.0%
GTGATTGAATGAAGACTTTG+AGG - Chr5:70657995-70658014 None:intergenic 35.0%
TGAGACACAGTACATTTGTT+TGG - Chr5:70656953-70656972 None:intergenic 35.0%
TGGATGTGAGAAATGGTTAA+GGG - Chr5:70656064-70656083 None:intergenic 35.0%
! TTTTTCTTCTTAGGAGCGAT+TGG + Chr5:70657761-70657780 MsG0580027899.01.T01:CDS 35.0%
!! CTATTGTTTTGTTGACCCTT+GGG + Chr5:70656341-70656360 MsG0580027899.01.T01:CDS 35.0%
!! TCTATTGTTTTGTTGACCCT+TGG + Chr5:70656340-70656359 MsG0580027899.01.T01:CDS 35.0%
!!! CTACTTTGTTTTGCGTTGTT+GGG + Chr5:70656572-70656591 MsG0580027899.01.T01:CDS 35.0%
!!! TGGATTTGTTTTACCGTTGT+TGG + Chr5:70656471-70656490 MsG0580027899.01.T01:CDS 35.0%
AAAAGAGAGCAATATTCGGG+GGG - Chr5:70657125-70657144 None:intergenic 40.0%
AACTACCCCTTAACAAAACG+CGG + Chr5:70657591-70657610 MsG0580027899.01.T01:intron 40.0%
AACTCAATCCTCTTAGCCAT+AGG + Chr5:70655932-70655951 MsG0580027899.01.T01:CDS 40.0%
AAGAAAAAACGCGAAAACCG+CGG - Chr5:70656287-70656306 None:intergenic 40.0%
AAGCAAGGGATTTCAAGCTT+GGG + Chr5:70657690-70657709 MsG0580027899.01.T01:CDS 40.0%
AATGCCAGATAGCAATGAAG+AGG - Chr5:70657801-70657820 None:intergenic 40.0%
AGTACTATGTTGTGCTAGTG+TGG + Chr5:70657720-70657739 MsG0580027899.01.T01:CDS 40.0%
ATGCGTCTATACTTCATCCA+TGG + Chr5:70655977-70655996 MsG0580027899.01.T01:CDS 40.0%
ATTATTCTTTCCACCATGGC+TGG - Chr5:70655857-70655876 None:intergenic 40.0%
GGGAATGAGAATTATTGGGA+AGG - Chr5:70656044-70656063 None:intergenic 40.0%
GTGGATGTGAGAAATGGTTA+AGG - Chr5:70656065-70656084 None:intergenic 40.0%
TACCGTTACCAAAACCCTAA+CGG + Chr5:70656097-70656116 MsG0580027899.01.T01:CDS 40.0%
TTGTGGTCATTCCTCAAGTT+GGG - Chr5:70658098-70658117 None:intergenic 40.0%
TTTGTGGTCATTCCTCAAGT+TGG - Chr5:70658099-70658118 None:intergenic 40.0%
! AATGAGTATTGCGATTTCGC+AGG + Chr5:70657655-70657674 MsG0580027899.01.T01:intron 40.0%
! ACCACCTTTGTTTATCGCTT+CGG + Chr5:70656153-70656172 MsG0580027899.01.T01:CDS 40.0%
! ACTTGTTGGTGAGTCAACTA+AGG + Chr5:70656402-70656421 MsG0580027899.01.T01:CDS 40.0%
! TAGTGTGGAGTGCTATAATG+TGG + Chr5:70657735-70657754 MsG0580027899.01.T01:CDS 40.0%
! TGTTTTACCGTTGTTGGAGT+TGG + Chr5:70656477-70656496 MsG0580027899.01.T01:CDS 40.0%
!! GTTTTGGCACTGAATTCTGA+TGG + Chr5:70656370-70656389 MsG0580027899.01.T01:CDS 40.0%
!! TTTGGTAACGGTAACGGTAA+CGG - Chr5:70656090-70656109 None:intergenic 40.0%
!!! GCTACTTTGTTTTGCGTTGT+TGG + Chr5:70656571-70656590 MsG0580027899.01.T01:CDS 40.0%
!!! GGGTAGTTCTCTCTTTTTTC+CGG - Chr5:70657579-70657598 None:intergenic 40.0%
!!! GGTAGTTCTCTCTTTTTTCC+GGG - Chr5:70657578-70657597 None:intergenic 40.0%
!!! TAGGGTTTTGGTAACGGTAA+CGG - Chr5:70656096-70656115 None:intergenic 40.0%
ACGGTTGTGGATGTGAGAAA+TGG - Chr5:70656071-70656090 None:intergenic 45.0%
ACTGCCGAAGCGATAAACAA+AGG - Chr5:70656160-70656179 None:intergenic 45.0%
AGCAAGGGATTTCAAGCTTG+GGG + Chr5:70657691-70657710 MsG0580027899.01.T01:CDS 45.0%
CACATGTTCCTATGGCTAAG+AGG - Chr5:70655943-70655962 None:intergenic 45.0%
CGTCTATACTTCATCCATGG+CGG + Chr5:70655980-70655999 MsG0580027899.01.T01:CDS 45.0%
CTCTTAGCCATAGGAACATG+TGG + Chr5:70655941-70655960 MsG0580027899.01.T01:CDS 45.0%
GAAGCAAGGGATTTCAAGCT+TGG + Chr5:70657689-70657708 MsG0580027899.01.T01:CDS 45.0%
GATTTCGCAGGTGATTCCAA+GGG + Chr5:70657667-70657686 MsG0580027899.01.T01:intron 45.0%
GTAGAGGTAGTCGTCTAAAC+CGG - Chr5:70656197-70656216 None:intergenic 45.0%
TGCCAAAACAACACTCCCAA+GGG - Chr5:70656359-70656378 None:intergenic 45.0%
TGTGCCTCTTCATTGCTATC+TGG + Chr5:70657794-70657813 MsG0580027899.01.T01:CDS 45.0%
TTAGCCATAGGAACATGTGG+TGG + Chr5:70655944-70655963 MsG0580027899.01.T01:CDS 45.0%
TTGAAATCCCTTGCTTCCCT+TGG - Chr5:70657686-70657705 None:intergenic 45.0%
TTGGGAAGGCAGATGTTTCA+AGG - Chr5:70656030-70656049 None:intergenic 45.0%
TTTATCGCTTCGGCAGTCAT+CGG + Chr5:70656163-70656182 MsG0580027899.01.T01:CDS 45.0%
! TGTTGTTGCCGTTAGGGTTT+TGG - Chr5:70656108-70656127 None:intergenic 45.0%
! TTGGCACTGAATTCTGATGG+TGG + Chr5:70656373-70656392 MsG0580027899.01.T01:CDS 45.0%
!! CTAGCTTTGTACCCAACTTG+AGG + Chr5:70658084-70658103 MsG0580027899.01.T01:three_prime_UTR 45.0%
!! GATGGTGGAGATAGACTTGT+TGG + Chr5:70656388-70656407 MsG0580027899.01.T01:CDS 45.0%
!! TCGACTCCGCGTTTTGTTAA+GGG - Chr5:70657600-70657619 None:intergenic 45.0%
!! TGCCGTTAGGGTTTTGGTAA+CGG - Chr5:70656102-70656121 None:intergenic 45.0%
!! TGCTTTGGTGCTCTCACTTT+GGG + Chr5:70657901-70657920 MsG0580027899.01.T01:CDS 45.0%
!! TTCGACTCCGCGTTTTGTTA+AGG - Chr5:70657601-70657620 None:intergenic 45.0%
!! TTGCTTTGGTGCTCTCACTT+TGG + Chr5:70657900-70657919 MsG0580027899.01.T01:CDS 45.0%
!! TTGGCTTCTGCTGCTTTGTA+TGG + Chr5:70656451-70656470 MsG0580027899.01.T01:CDS 45.0%
!!! TCTCTCTTTTTTCCGGGCTA+GGG - Chr5:70657572-70657591 None:intergenic 45.0%
!!! TTCTCTCTTTTTTCCGGGCT+AGG - Chr5:70657573-70657592 None:intergenic 45.0%
!! ATGTTTAATTAATATTTAAT+TGG - Chr5:70657476-70657495 None:intergenic 5.0%
AGCAGAGAAAGGGGTTGCTT+TGG + Chr5:70657886-70657905 MsG0580027899.01.T01:CDS 50.0%
AGGTGATTCCAAGGGAAGCA+AGG + Chr5:70657675-70657694 MsG0580027899.01.T01:intron 50.0%
CGATTTCGCAGGTGATTCCA+AGG + Chr5:70657666-70657685 MsG0580027899.01.T01:intron 50.0%
GCCGAAGCGATAAACAAAGG+TGG - Chr5:70656157-70656176 None:intergenic 50.0%
GGTGATTCCAAGGGAAGCAA+GGG + Chr5:70657676-70657695 MsG0580027899.01.T01:intron 50.0%
GTGCCAAAACAACACTCCCA+AGG - Chr5:70656360-70656379 None:intergenic 50.0%
TGGTCCACCACATGTTCCTA+TGG - Chr5:70655951-70655970 None:intergenic 50.0%
! AACGGTAACGGTAACGGTTG+TGG - Chr5:70656084-70656103 None:intergenic 50.0%
! CTCACACTTAGCTTTCACCG+CGG + Chr5:70656267-70656286 MsG0580027899.01.T01:CDS 50.0%
!! CGACTCCGCGTTTTGTTAAG+GGG - Chr5:70657599-70657618 None:intergenic 50.0%
!! GCTTTGGTGCTCTCACTTTG+GGG + Chr5:70657902-70657921 MsG0580027899.01.T01:CDS 50.0%
!!! GACCCTTGGGAGTGTTGTTT+TGG + Chr5:70656354-70656373 MsG0580027899.01.T01:CDS 50.0%
ATAACAAGAGGGCCCTAGCC+CGG + Chr5:70657557-70657576 MsG0580027899.01.T01:intron 55.0%
CGCGGTGAAAGCTAAGTGTG+AGG - Chr5:70656269-70656288 None:intergenic 55.0%
GCAGTCATCGGAGTTCTCAC+CGG + Chr5:70656175-70656194 MsG0580027899.01.T01:CDS 55.0%
TCCATGGCGGCAAACGTGTA+TGG + Chr5:70655993-70656012 MsG0580027899.01.T01:CDS 55.0%
! CTGCGGCATAAAGCGTCTAC+CGG + Chr5:70656219-70656238 MsG0580027899.01.T01:CDS 55.0%
CGGTAGACGCTTTATGCCGC+AGG - Chr5:70656221-70656240 None:intergenic 60.0%
GACGACTACCTCTACGCCTG+CGG + Chr5:70656202-70656221 MsG0580027899.01.T01:CDS 60.0%
GCCATACACGTTTGCCGCCA+TGG - Chr5:70655997-70656016 None:intergenic 60.0%
GCTTTATGCCGCAGGCGTAG+AGG - Chr5:70656213-70656232 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
Chr5 gene 70655812 70658140 70655812 ID=MsG0580027899.01;Name=MsG0580027899.01
Chr5 mRNA 70655812 70658140 70655812 ID=MsG0580027899.01.T01;Parent=MsG0580027899.01;Name=MsG0580027899.01.T01;_AED=0.33;_eAED=0.33;_QI=48|1|1|1|1|1|2|122|366
Chr5 exon 70655812 70656618 70655812 ID=MsG0580027899.01.T01:exon:5353;Parent=MsG0580027899.01.T01
Chr5 exon 70657677 70658140 70657677 ID=MsG0580027899.01.T01:exon:5354;Parent=MsG0580027899.01.T01
Chr5 five_prime_UTR 70655812 70655859 70655812 ID=MsG0580027899.01.T01:five_prime_utr;Parent=MsG0580027899.01.T01
Chr5 CDS 70655860 70656618 70655860 ID=MsG0580027899.01.T01:cds;Parent=MsG0580027899.01.T01
Chr5 CDS 70657677 70658018 70657677 ID=MsG0580027899.01.T01:cds;Parent=MsG0580027899.01.T01
Chr5 three_prime_UTR 70658019 70658140 70658019 ID=MsG0580027899.01.T01:three_prime_utr;Parent=MsG0580027899.01.T01
Gene Sequence

>MsG0580027899.01.T01

ATGGTGGAAAGAATAATTAGCAAAGAAGAAGAAAGCAAAAAAAGAAGCATGAAGAAACTCCTTCTAATACTAAACTCAATCCTCTTAGCCATAGGAACATGTGGTGGACCACTAGTAATGCGTCTATACTTCATCCATGGCGGCAAACGTGTATGGCTCTCAAGCTTCCTTGAAACATCTGCCTTCCCAATAATTCTCATTCCCTTAACCATTTCTCACATCCACAACCGTTACCGTTACCGTTACCAAAACCCTAACGGCAACAACAATAATAACAACTTTGTCTCAATGAAACCACCTTTGTTTATCGCTTCGGCAGTCATCGGAGTTCTCACCGGTTTAGACGACTACCTCTACGCCTGCGGCATAAAGCGTCTACCGGTGTCAACTTCTTCGTTAATTCAATCCTCACACTTAGCTTTCACCGCGGTTTTCGCGTTTTTTCTTGTGAAGCATAAGTTCACAGCTTATTCTGTTAACTCTATTGTTTTGTTGACCCTTGGGAGTGTTGTTTTGGCACTGAATTCTGATGGTGGAGATAGACTTGTTGGTGAGTCAACTAAGGATTATGTGATTGGTTTTGTTATGATATTGGCTTCTGCTGCTTTGTATGGATTTGTTTTACCGTTGTTGGAGTTGGTTTATAAAAAGAGTAAACAAGTTATTACTTATTCTCTTGTTATGGAGATTCAGCTTGTTATGTGCTTCTTTGCTACTTTGTTTTGCGTTGTTGGGATGATCATAGACAATGATTTTAAGGTGATTCCAAGGGAAGCAAGGGATTTCAAGCTTGGGGAAACAAAGTACTATGTTGTGCTAGTGTGGAGTGCTATAATGTGGCAATTTTTCTTCTTAGGAGCGATTGGAGTTATCTTTTGTGCCTCTTCATTGCTATCTGGCATTATAATTGCTGCATTTCTTCCCATAACTGAAATCTTAGCTGTTATTGTCTACAAAGAGAAATTTCAAGCAGAGAAAGGGGTTGCTTTGGTGCTCTCACTTTGGGGCTTTGTGTCTTACTTTTATGATGAGATTAAAGAAGCAAAAAAAATGAAAAATAGAGAAATGGAACTGCCTCAAAGTCTTCATTCAATCACATGA

Protein sequence

>MsG0580027899.01.T01

MVERIISKEEESKKRSMKKLLLILNSILLAIGTCGGPLVMRLYFIHGGKRVWLSSFLETSAFPIILIPLTISHIHNRYRYRYQNPNGNNNNNNFVSMKPPLFIASAVIGVLTGLDDYLYACGIKRLPVSTSSLIQSSHLAFTAVFAFFLVKHKFTAYSVNSIVLLTLGSVVLALNSDGGDRLVGESTKDYVIGFVMILASAALYGFVLPLLELVYKKSKQVITYSLVMEIQLVMCFFATLFCVVGMIIDNDFKVIPREARDFKLGETKYYVVLVWSAIMWQFFFLGAIGVIFCASSLLSGIIIAAFLPITEILAVIVYKEKFQAEKGVALVLSLWGFVSYFYDEIKEAKKMKNREMELPQSLHSIT*