AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380017035.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380017035.01.T01 MTR_3g099750 92.748 262 19 0 1 262 97 358 8.49e-176 489
MsG0380017035.01.T01 MTR_3g099740 91.603 262 22 0 1 262 98 359 2.09e-175 488
MsG0380017035.01.T01 MTR_5g065080 69.582 263 78 2 1 262 95 356 3.95e-126 363
MsG0380017035.01.T01 MTR_2g437590 38.077 260 157 2 3 261 139 395 6.05e-56 185
MsG0380017035.01.T01 MTR_3g058660 38.983 236 144 0 12 247 98 333 2.69e-52 174
MsG0380017035.01.T01 MTR_2g015470 32.171 258 175 0 1 258 112 369 2.67e-48 164
MsG0380017035.01.T01 MTR_8g024620 36.290 248 158 0 5 252 109 356 2.42e-45 156
MsG0380017035.01.T01 MTR_8g024620 36.290 248 158 0 5 252 120 367 3.63e-45 155
MsG0380017035.01.T01 MTR_8g024620 36.290 248 158 0 5 252 121 368 3.71e-45 155
MsG0380017035.01.T01 MTR_2g437580 35.409 257 162 2 2 257 119 372 1.13e-44 155
MsG0380017035.01.T01 MTR_4g098900 32.143 252 150 4 11 261 119 350 1.24e-38 139
MsG0380017035.01.T01 MTR_7g080750 33.333 249 152 2 12 259 107 342 3.21e-38 137
MsG0380017035.01.T01 MTR_6g082540 33.784 148 98 0 100 247 4 151 1.39e-24 96.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380017035.01.T01 AT1G28220 60.853 258 99 1 1 258 75 330 3.04e-112 327
MsG0380017035.01.T01 AT1G28230 62.451 253 94 1 1 252 81 333 5.30e-111 324
MsG0380017035.01.T01 AT2G33750 59.302 258 105 0 1 258 77 334 7.82e-107 313
MsG0380017035.01.T01 AT2G33750 57.090 268 104 1 1 257 77 344 2.65e-103 305
MsG0380017035.01.T01 AT4G18205 40.161 249 146 1 13 261 121 366 7.53e-50 168
MsG0380017035.01.T01 AT4G18220 37.652 247 154 0 12 258 123 369 1.09e-49 168
MsG0380017035.01.T01 AT4G18210 37.083 240 151 0 19 258 130 369 2.60e-46 159
MsG0380017035.01.T01 AT4G18197 38.934 244 146 1 13 256 124 364 2.56e-43 151
MsG0380017035.01.T01 AT4G18195 38.934 244 146 1 13 256 127 367 3.57e-43 151
MsG0380017035.01.T01 AT1G44750 32.932 249 166 1 11 258 44 292 6.33e-42 145
MsG0380017035.01.T01 AT1G44750 32.932 249 166 1 11 258 44 292 6.33e-42 145
MsG0380017035.01.T01 AT1G44750 32.932 249 166 1 11 258 44 292 6.33e-42 145
MsG0380017035.01.T01 AT1G44750 32.932 249 166 1 11 258 44 292 6.33e-42 145
MsG0380017035.01.T01 AT1G44750 32.932 249 166 1 11 258 44 292 6.33e-42 145
MsG0380017035.01.T01 AT1G44750 32.932 249 166 1 11 258 108 356 4.32e-41 145
MsG0380017035.01.T01 AT1G44750 32.932 249 166 1 11 258 108 356 4.32e-41 145
MsG0380017035.01.T01 AT1G44750 32.932 249 166 1 11 258 120 368 5.22e-41 145
MsG0380017035.01.T01 AT1G30840 36.250 240 148 3 9 246 101 337 1.07e-38 139
MsG0380017035.01.T01 AT1G30840 36.250 240 148 3 9 246 101 337 1.07e-38 139
MsG0380017035.01.T01 AT4G18190 34.127 252 161 2 12 258 116 367 1.04e-33 126
MsG0380017035.01.T01 AT2G24220 37.826 230 143 0 12 241 112 341 1.37e-33 125
MsG0380017035.01.T01 AT2G24220 37.826 230 143 0 12 241 130 359 1.83e-33 125
MsG0380017035.01.T01 AT4G08700 27.711 249 179 1 12 259 110 358 3.85e-30 116
MsG0380017035.01.T01 AT5G41160 27.309 249 180 1 12 259 113 361 1.18e-26 106
MsG0380017035.01.T01 AT1G19770 24.898 245 172 3 12 245 140 383 8.28e-19 85.5
MsG0380017035.01.T01 AT1G57943 27.863 262 176 5 5 256 127 385 3.00e-15 75.1
MsG0380017035.01.T01 AT1G57943 27.863 262 176 5 5 256 126 384 3.32e-15 75.1
MsG0380017035.01.T01 AT1G47603 30.303 231 141 7 38 255 160 383 9.11e-14 70.9
MsG0380017035.01.T01 AT1G57990 25.692 253 178 4 12 256 127 377 2.17e-13 69.7
MsG0380017035.01.T01 AT1G57980 29.119 261 159 7 12 256 131 381 4.71e-13 68.6

Find 45 sgRNAs with CRISPR-Local

Find 180 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCAAGGGAAGCTAGAAATTT+TGG 0.100824 3:+91041375 MsG0380017035.01.T01:CDS
GATTGCAAACAATGACTTTA+AGG 0.119715 3:+91038767 MsG0380017035.01.T01:CDS
TGTCACTTGTACTTTCTCTT+TGG 0.257169 3:+91041592 MsG0380017035.01.T01:CDS
GTCACTTGTACTTTCTCTTT+GGG 0.266053 3:+91041593 MsG0380017035.01.T01:CDS
CATCACTTATTCTCTTGTTA+TGG 0.272446 3:+91038692 MsG0380017035.01.T01:CDS
TACGGTTGGTTCTGGTGTTT+TGG 0.295285 3:+91038527 MsG0380017035.01.T01:CDS
AAGCTGAGATGCTATTATTA+AGG 0.319246 3:-91038427 None:intergenic
TTTAATCTCACCATAGAAAT+AGG 0.320060 3:-91041625 None:intergenic
GCCACTCTCTTCTGTGCTAT+AGG 0.354346 3:+91038741 MsG0380017035.01.T01:CDS
GTTGCTGCTTCTGCATTGTA+TGG 0.384050 3:+91038621 MsG0380017035.01.T01:CDS
ATTAAGGAACCAGTGGAAAC+TGG 0.398731 3:-91038411 None:intergenic
TCTTCGCATATGGCGTTGCT+CGG 0.418830 3:+91038385 MsG0380017035.01.T01:CDS
TTCTTCGCAGCCGCCTTCAT+CGG 0.427701 3:+91038336 MsG0380017035.01.T01:CDS
CCAAAATTTCTAGCTTCCCT+TGG 0.438019 3:-91041375 None:intergenic
ACTGCCAACACTTCTGTTAG+TGG 0.444558 3:-91041531 None:intergenic
TTGTGCCTCATCGTTAGTGT+CGG 0.457199 3:+91041485 MsG0380017035.01.T01:CDS
GCTCGGCTTCCAGTTTCCAC+TGG 0.458963 3:+91038402 MsG0380017035.01.T01:CDS
GAAGAAAATAGAAGGTTTCA+TGG 0.460569 3:-91038319 None:intergenic
GACGACTATCTCTTCGCATA+TGG 0.467374 3:+91038375 MsG0380017035.01.T01:CDS
GCCGGTGAGGATTCCGATGA+AGG 0.474028 3:-91038349 None:intergenic
TGTGCCTCATCGTTAGTGTC+GGG 0.483652 3:+91041486 MsG0380017035.01.T01:CDS
GCGGCTGCGAAGAAAATAGA+AGG 0.499053 3:-91038327 None:intergenic
TGAAATTGTAGGTGATTCCA+AGG 0.522629 3:+91041358 MsG0380017035.01.T01:intron
ACGAGTAGTGATCGTCCTGC+TGG 0.534270 3:+91038558 MsG0380017035.01.T01:CDS
TCACTTGTACTTTCTCTTTG+GGG 0.538433 3:+91041594 MsG0380017035.01.T01:CDS
TGGTGAGATTAAACATGCTA+AGG 0.555926 3:+91041635 MsG0380017035.01.T01:CDS
TTAATAATAGCATCTCAGCT+TGG 0.557663 3:+91038429 MsG0380017035.01.T01:CDS
TGCTATTATTAAGGAACCAG+TGG 0.565701 3:-91038418 None:intergenic
TTATAAACCAACTTAACCGA+AGG 0.572401 3:-91038654 None:intergenic
GTTACCACTAACAGAAGTGT+TGG 0.579485 3:+91041527 MsG0380017035.01.T01:CDS
GCCTTCATCGGAATCCTCAC+CGG 0.585533 3:+91038348 MsG0380017035.01.T01:CDS
AAGCACTTACTATGTTGTGT+TGG 0.589316 3:+91041407 MsG0380017035.01.T01:CDS
ATAACAAGAGAATAAGTGAT+GGG 0.603082 3:-91038690 None:intergenic
CATAACAAGAGAATAAGTGA+TGG 0.603170 3:-91038691 None:intergenic
GAAGAGATAGTCGTCAAGGC+CGG 0.619969 3:-91038367 None:intergenic
ATGCGAAGAGATAGTCGTCA+AGG 0.632876 3:-91038371 None:intergenic
TGGTTGTTAGTGCGTTAATG+TGG 0.639944 3:+91041427 MsG0380017035.01.T01:CDS
CAATGCAGAAGCAGCAACCG+TGG 0.648575 3:-91038616 None:intergenic
GGTGAGGATTCCGATGAAGG+CGG 0.655496 3:-91038346 None:intergenic
ACCAACCGTAAGCAAAACAA+TGG 0.657982 3:-91038514 None:intergenic
GCCTATAGCACAGAAGAGAG+TGG 0.659041 3:-91038742 None:intergenic
GAAATTGTAGGTGATTCCAA+GGG 0.661077 3:+91041359 MsG0380017035.01.T01:intron
GATAGTCGTCAAGGCCGGTG+AGG 0.690358 3:-91038362 None:intergenic
AATACCCGACACTAACGATG+AGG 0.705820 3:-91041490 None:intergenic
AAGGCAGAAAAGAAGAAACG+TGG 0.749200 3:+91041654 MsG0380017035.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAAAGAATAATGAAA+AGG + Chr3:91039666-91039685 MsG0380017035.01.T01:intron 10.0%
!! AATAAATTTAATGTAACAAA+TGG + Chr3:91040645-91040664 MsG0380017035.01.T01:intron 10.0%
!! TAAATATTTGTTTATATTGT+TGG + Chr3:91040814-91040833 MsG0380017035.01.T01:intron 10.0%
!! TTAGATCTATAAAAATAAAA+AGG + Chr3:91040344-91040363 MsG0380017035.01.T01:intron 10.0%
!!! ATTATTTTCTCAAAATTTAT+CGG + Chr3:91039019-91039038 MsG0380017035.01.T01:intron 10.0%
!!! TTTTAACAATTAATATTAAC+AGG + Chr3:91039961-91039980 MsG0380017035.01.T01:intron 10.0%
!!! TTTTTTAATGTAATTTTTTC+AGG - Chr3:91040198-91040217 None:intergenic 10.0%
!! AGAAAAAGATAATAATGAAA+AGG + Chr3:91039710-91039729 MsG0380017035.01.T01:intron 15.0%
!! ATAAAGTTAATAGCTTAAAT+TGG - Chr3:91039939-91039958 None:intergenic 15.0%
!! CTATAAAAATAAAAAGGAAA+TGG + Chr3:91040350-91040369 MsG0380017035.01.T01:intron 15.0%
!!! ATAGTAAAATATGTTGTTTA+AGG - Chr3:91040748-91040767 None:intergenic 15.0%
!!! CTTTTCATTTTTTTTTCTTT+CGG - Chr3:91040392-91040411 None:intergenic 15.0%
!!! TAGTAAAATATGTTGTTTAA+GGG - Chr3:91040747-91040766 None:intergenic 15.0%
!! AAAAATTAACAATTATGTCC+TGG - Chr3:91039188-91039207 None:intergenic 20.0%
!! AAGTCATAAATTAAATTCAG+TGG + Chr3:91039387-91039406 MsG0380017035.01.T01:intron 20.0%
!! AAGTTTCAAAAGTTATAGAT+AGG + Chr3:91041088-91041107 MsG0380017035.01.T01:intron 20.0%
!! AGCTTCAAGTAATATAATAT+AGG + Chr3:91040160-91040179 MsG0380017035.01.T01:intron 20.0%
!! CACAAAAAACAATAATGAAA+AGG + Chr3:91039820-91039839 MsG0380017035.01.T01:intron 20.0%
!! CGAAAGAAAAAAAAATGAAA+AGG + Chr3:91040390-91040409 MsG0380017035.01.T01:intron 20.0%
!! GAGAAAATAATTATAAATGC+CGG - Chr3:91039010-91039029 None:intergenic 20.0%
!! TCCAAAGATAAAATTATATG+CGG + Chr3:91039605-91039624 MsG0380017035.01.T01:intron 20.0%
!! TTATTTGTATAGAAAGTTGA+GGG - Chr3:91040604-91040623 None:intergenic 20.0%
!!! ATGAAAAGGAAACTTTTATA+CGG + Chr3:91040404-91040423 MsG0380017035.01.T01:intron 20.0%
!!! CTATAACTTTTGAAACTTAA+AGG - Chr3:91041086-91041105 None:intergenic 20.0%
!!! TTCATTATTGTTTTTTGTGT+TGG - Chr3:91039819-91039838 None:intergenic 20.0%
!!! TTTTTTTTTTCTTTCCGTTA+CGG - Chr3:91039655-91039674 None:intergenic 20.0%
! AAAAGAACTGTGATCAATAA+AGG + Chr3:91041311-91041330 MsG0380017035.01.T01:intron 25.0%
! ATAAATGCAGTCTAATATGA+AGG - Chr3:91040015-91040034 None:intergenic 25.0%
! ATAACAAGAGAATAAGTGAT+GGG - Chr3:91038693-91038712 None:intergenic 25.0%
! CGAAAGAAAACAATATACAA+AGG + Chr3:91039470-91039489 MsG0380017035.01.T01:intron 25.0%
! CTAAATCTATAAAAAGGAAC+TGG + Chr3:91039529-91039548 MsG0380017035.01.T01:intron 25.0%
! GGTTGAGAAATAATAAATTC+AGG - Chr3:91039994-91040013 None:intergenic 25.0%
! GTTATTTGTATAGAAAGTTG+AGG - Chr3:91040605-91040624 None:intergenic 25.0%
! TGCATCAACAAAAATGAATA+TGG + Chr3:91039359-91039378 MsG0380017035.01.T01:intron 25.0%
! TTTAATCTCACCATAGAAAT+AGG - Chr3:91041628-91041647 None:intergenic 25.0%
!! ACCGCATATAATTTTATCTT+TGG - Chr3:91039609-91039628 None:intergenic 25.0%
!! AGAGTTTGAATTTTACTAAG+TGG + Chr3:91039081-91039100 MsG0380017035.01.T01:intron 25.0%
!! ATAAGTCCTTTAAGTTTCAA+AGG - Chr3:91041240-91041259 None:intergenic 25.0%
!! GATATTGGATTTGAAATTGT+AGG + Chr3:91041347-91041366 MsG0380017035.01.T01:intron 25.0%
!!! CTTTAAGGTAAGATTATGTT+AGG + Chr3:91038782-91038801 MsG0380017035.01.T01:intron 25.0%
AAAATTCCAAGCAGAAAAAG+CGG + Chr3:91041569-91041588 MsG0380017035.01.T01:CDS 30.0%
AAGCTGAGATGCTATTATTA+AGG - Chr3:91038430-91038449 None:intergenic 30.0%
AAGTTTCAAAGGTTACAGAT+AGG - Chr3:91041229-91041248 None:intergenic 30.0%
AAGTTTCAAAGGTTTCAGAT+AGG + Chr3:91041117-91041136 MsG0380017035.01.T01:intron 30.0%
AGATCCAAACCTAATCAATT+AGG - Chr3:91039164-91039183 None:intergenic 30.0%
AGGTAAGATTATGTTAGGTA+AGG + Chr3:91038787-91038806 MsG0380017035.01.T01:intron 30.0%
CACAGTAGTTGAATTTATGA+AGG + Chr3:91039108-91039127 MsG0380017035.01.T01:intron 30.0%
CATAACAAGAGAATAAGTGA+TGG - Chr3:91038694-91038713 None:intergenic 30.0%
CATCACTTATTCTCTTGTTA+TGG + Chr3:91038692-91038711 MsG0380017035.01.T01:CDS 30.0%
CGTTAGTACAATAAAAAGAG+CGG + Chr3:91040959-91040978 MsG0380017035.01.T01:intron 30.0%
CTGAAACCTTAGAAACTTAA+AGG + Chr3:91041202-91041221 MsG0380017035.01.T01:intron 30.0%
GAAACAAACTCGAAACTTAA+AGG - Chr3:91041144-91041163 None:intergenic 30.0%
GATCCAAACCTAATCAATTA+GGG - Chr3:91039163-91039182 None:intergenic 30.0%
GATTGCAAACAATGACTTTA+AGG + Chr3:91038767-91038786 MsG0380017035.01.T01:CDS 30.0%
GGAACACTAATATGAGATAT+TGG + Chr3:91041332-91041351 MsG0380017035.01.T01:intron 30.0%
GTTACAAACGTGAAACTTAA+AGG + Chr3:91041262-91041281 MsG0380017035.01.T01:intron 30.0%
GTTACAAACGTGAAACTTAA+AGG - Chr3:91041281-91041262 None:intergenic 30.0%
TATAGATCTAACTACCATTG+CGG - Chr3:91040335-91040354 None:intergenic 30.0%
TATATGAAAACCTTGTTGCA+TGG + Chr3:91038927-91038946 MsG0380017035.01.T01:intron 30.0%
TATTATTACCAGCGAAAAGA+CGG - Chr3:91041005-91041024 None:intergenic 30.0%
TTAAAGATTTAGTCGCCTTT+GGG - Chr3:91039759-91039778 None:intergenic 30.0%
TTAATAATAGCATCTCAGCT+TGG + Chr3:91038429-91038448 MsG0380017035.01.T01:CDS 30.0%
TTATAAACCAACTTAACCGA+AGG - Chr3:91038657-91038676 None:intergenic 30.0%
TTTAAAGATTTAGTCGCCTT+TGG - Chr3:91039760-91039779 None:intergenic 30.0%
! ATAGGTCCTTTAAGTTTCAA+AGG + Chr3:91041106-91041125 MsG0380017035.01.T01:intron 30.0%
! ATAGGTCCTTTAAGTTTCTA+AGG - Chr3:91041211-91041230 None:intergenic 30.0%
!! AAGTTTCTAAGGTTTCAGAT+AGG - Chr3:91041200-91041219 None:intergenic 30.0%
!! CTGAAACCTTTGAAACTTAA+AGG - Chr3:91041115-91041134 None:intergenic 30.0%
!! CTGTAACCTTTGAAACTTAA+AGG + Chr3:91041231-91041250 MsG0380017035.01.T01:intron 30.0%
!! TCAACCTAAAAGTGTTGAAA+GGG - Chr3:91040562-91040581 None:intergenic 30.0%
!! TCTGGTTTCGATCAATTTTT+AGG + Chr3:91039567-91039586 MsG0380017035.01.T01:intron 30.0%
!! TGTTTTTGCTAGACTCTAAT+CGG + Chr3:91039207-91039226 MsG0380017035.01.T01:intron 30.0%
!! TTCAACCTAAAAGTGTTGAA+AGG - Chr3:91040563-91040582 None:intergenic 30.0%
!!! TAGAAAGTTGAGGGTATTTT+TGG - Chr3:91040595-91040614 None:intergenic 30.0%
AAGAAGAAAAGCGAAAAACG+CGG - Chr3:91038460-91038479 None:intergenic 35.0%
AAGCACTTACTATGTTGTGT+TGG + Chr3:91041407-91041426 MsG0380017035.01.T01:CDS 35.0%
ACATGACGCAAGTCATATAT+CGG - Chr3:91038976-91038995 None:intergenic 35.0%
AGACCCTAATTGATTAGGTT+TGG + Chr3:91039157-91039176 MsG0380017035.01.T01:intron 35.0%
ATTATTACCAGCGAAAAGAC+GGG - Chr3:91041004-91041023 None:intergenic 35.0%
CGCTGGTAATAATAACGAAA+AGG + Chr3:91041011-91041030 MsG0380017035.01.T01:intron 35.0%
GAAATTGTAGGTGATTCCAA+GGG + Chr3:91041359-91041378 MsG0380017035.01.T01:intron 35.0%
GATTCAGACCCTAATTGATT+AGG + Chr3:91039152-91039171 MsG0380017035.01.T01:intron 35.0%
GTCACTTGTACTTTCTCTTT+GGG + Chr3:91041593-91041612 MsG0380017035.01.T01:CDS 35.0%
TCACTTGTACTTTCTCTTTG+GGG + Chr3:91041594-91041613 MsG0380017035.01.T01:CDS 35.0%
TCAGTGGAACTAATCAAAAG+TGG + Chr3:91039403-91039422 MsG0380017035.01.T01:intron 35.0%
TGAAATTGTAGGTGATTCCA+AGG + Chr3:91041358-91041377 MsG0380017035.01.T01:intron 35.0%
TGAGAAAAAGCTAATCCCAA+AGG + Chr3:91039741-91039760 MsG0380017035.01.T01:intron 35.0%
TGCTATTATTAAGGAACCAG+TGG - Chr3:91038421-91038440 None:intergenic 35.0%
TGGTGAGATTAAACATGCTA+AGG + Chr3:91041635-91041654 MsG0380017035.01.T01:CDS 35.0%
TTATGAAGGAGAATCTCTTC+TGG + Chr3:91039122-91039141 MsG0380017035.01.T01:intron 35.0%
! CAAGGGAAGCTAGAAATTTT+GGG + Chr3:91041376-91041395 MsG0380017035.01.T01:CDS 35.0%
! GTTTTTGCTAGACTCTAATC+GGG + Chr3:91039208-91039227 MsG0380017035.01.T01:intron 35.0%
! TGTCACTTGTACTTTCTCTT+TGG + Chr3:91041592-91041611 MsG0380017035.01.T01:CDS 35.0%
! TTACCCCTTTCAACACTTTT+AGG + Chr3:91040555-91040574 MsG0380017035.01.T01:intron 35.0%
! TTTTGGATGGAATTCCGTAA+CGG + Chr3:91039638-91039657 MsG0380017035.01.T01:intron 35.0%
!! AAACGCCATTGTTTTGCTTA+CGG + Chr3:91038509-91038528 MsG0380017035.01.T01:CDS 35.0%
!! CAACCTAAAAGTGTTGAAAG+GGG - Chr3:91040561-91040580 None:intergenic 35.0%
!! GATCACAGTTCTTTTTCGTT+AGG - Chr3:91041306-91041325 None:intergenic 35.0%
!! GTTTCGAGTTTGTTTCAGAT+AGG + Chr3:91041148-91041167 MsG0380017035.01.T01:intron 35.0%
!! TATGCGGTTCAGTTTGATTT+TGG + Chr3:91039621-91039640 MsG0380017035.01.T01:intron 35.0%
!!! AAGTTGAGGGTATTTTTGGA+AGG - Chr3:91040591-91040610 None:intergenic 35.0%
!!! GGTTTTGTGTCCTATTTCTA+TGG + Chr3:91041615-91041634 MsG0380017035.01.T01:CDS 35.0%
!!! GTATGGATTTGTTTTGCCTT+CGG + Chr3:91038638-91038657 MsG0380017035.01.T01:CDS 35.0%
!!! TGCGATTAGTTTTTCAACCA+CGG + Chr3:91038599-91038618 MsG0380017035.01.T01:CDS 35.0%
AAGGCAGAAAAGAAGAAACG+TGG + Chr3:91041654-91041673 MsG0380017035.01.T01:CDS 40.0%
ACCAACCGTAAGCAAAACAA+TGG - Chr3:91038517-91038536 None:intergenic 40.0%
ACTACCATTGCGGTTAGTAT+CGG - Chr3:91040325-91040344 None:intergenic 40.0%
ATTAAGGAACCAGTGGAAAC+TGG - Chr3:91038414-91038433 None:intergenic 40.0%
CTATAAAAAGGAACTGGCAG+TGG + Chr3:91039535-91039554 MsG0380017035.01.T01:intron 40.0%
CTTTCTATCAACCTCCGTTA+AGG + Chr3:91041173-91041192 MsG0380017035.01.T01:intron 40.0%
GGGCGGCTAAATCTATAAAA+AGG + Chr3:91039523-91039542 MsG0380017035.01.T01:intron 40.0%
GGTTTCAGATAGGTCCTTAA+CGG - Chr3:91041190-91041209 None:intergenic 40.0%
TGATTAGGTTTGGATCTTCC+AGG + Chr3:91039167-91039186 MsG0380017035.01.T01:intron 40.0%
TGGTTGTTAGTGCGTTAATG+TGG + Chr3:91041427-91041446 MsG0380017035.01.T01:CDS 40.0%
! AATGTGGCAAGCGTTTTTCT+TGG + Chr3:91041443-91041462 MsG0380017035.01.T01:CDS 40.0%
! ATGTGGCAAGCGTTTTTCTT+GGG + Chr3:91041444-91041463 MsG0380017035.01.T01:CDS 40.0%
! CCAAGGGAAGCTAGAAATTT+TGG + Chr3:91041375-91041394 MsG0380017035.01.T01:CDS 40.0%
! CGTTTTTCTTGGGAGCTATT+GGG + Chr3:91041454-91041473 MsG0380017035.01.T01:CDS 40.0%
! GAAGCTAGAAATTTTGGGCT+AGG + Chr3:91041381-91041400 MsG0380017035.01.T01:CDS 40.0%
! GTTACCACTAACAGAAGTGT+TGG + Chr3:91041527-91041546 MsG0380017035.01.T01:CDS 40.0%
! GTTTTTCTTGGGAGCTATTG+GGG + Chr3:91041455-91041474 MsG0380017035.01.T01:CDS 40.0%
! TGTTTTGCCTTCGGTTAAGT+TGG + Chr3:91038647-91038666 MsG0380017035.01.T01:CDS 40.0%
!! CCAAAATTTCTAGCTTCCCT+TGG - Chr3:91041378-91041397 None:intergenic 40.0%
!! CGGTTCAGTTTGATTTTGGA+TGG + Chr3:91039625-91039644 MsG0380017035.01.T01:intron 40.0%
!! CTTAACGGAGGTTGATAGAA+AGG - Chr3:91041175-91041194 None:intergenic 40.0%
!! GTTAGTATCGGTTTCTTGGT+GGG - Chr3:91040313-91040332 None:intergenic 40.0%
!! TGTGTTGTCATGTGCTACTT+CGG + Chr3:91039858-91039877 MsG0380017035.01.T01:intron 40.0%
AAAAGGCCAAATACCTCCCT+GGG + Chr3:91041028-91041047 MsG0380017035.01.T01:intron 45.0%
AATACCCGACACTAACGATG+AGG - Chr3:91041493-91041512 None:intergenic 45.0%
ACGTGAAACTTAAAGGACCC+AGG - Chr3:91041288-91041269 None:intergenic 45.0%
ACTGCCAACACTTCTGTTAG+TGG - Chr3:91041534-91041553 None:intergenic 45.0%
ATGCGAAGAGATAGTCGTCA+AGG - Chr3:91038374-91038393 None:intergenic 45.0%
CGTGAAACTTAAAGGACCCA+GGG - Chr3:91041289-91041270 None:intergenic 45.0%
GAAACCGATACTAACCGCAA+TGG + Chr3:91040318-91040337 MsG0380017035.01.T01:intron 45.0%
GAAACTTAAAGGACCCAGAG+AGG + Chr3:91041273-91041292 MsG0380017035.01.T01:intron 45.0%
GACGACTATCTCTTCGCATA+TGG + Chr3:91038375-91038394 MsG0380017035.01.T01:CDS 45.0%
GCATGGACACTTCTGATTGA+AGG + Chr3:91038944-91038963 MsG0380017035.01.T01:intron 45.0%
GTTAGGCCAAATACCTCTCT+GGG - Chr3:91041289-91041308 None:intergenic 45.0%
TATAGATTTAGCCGCCCTTG+CGG - Chr3:91039520-91039539 None:intergenic 45.0%
TTCAGATAGGTCCTTAACGG+AGG - Chr3:91041187-91041206 None:intergenic 45.0%
TTGTGCCTCATCGTTAGTGT+CGG + Chr3:91041485-91041504 MsG0380017035.01.T01:CDS 45.0%
! GCGTTTTTCTTGGGAGCTAT+TGG + Chr3:91041453-91041472 MsG0380017035.01.T01:CDS 45.0%
! GTTGCTGCTTCTGCATTGTA+TGG + Chr3:91038621-91038640 MsG0380017035.01.T01:CDS 45.0%
! TGTTTTGCAGAAACACCAGC+AGG - Chr3:91038576-91038595 None:intergenic 45.0%
!! AAAGGACCCAGAGAGGTATT+TGG + Chr3:91041280-91041299 MsG0380017035.01.T01:intron 45.0%
!! GCCATTGTTTTGCTTACGGT+TGG + Chr3:91038513-91038532 MsG0380017035.01.T01:CDS 45.0%
!! GGTTAGTATCGGTTTCTTGG+TGG - Chr3:91040314-91040333 None:intergenic 45.0%
!! GTTTTGCTTACGGTTGGTTC+TGG + Chr3:91038519-91038538 MsG0380017035.01.T01:CDS 45.0%
!! TCAGAAGTGTCCATGCAACA+AGG - Chr3:91038940-91038959 None:intergenic 45.0%
!! TGCGGTTAGTATCGGTTTCT+TGG - Chr3:91040317-91040336 None:intergenic 45.0%
!!! TACGGTTGGTTCTGGTGTTT+TGG + Chr3:91038527-91038546 MsG0380017035.01.T01:CDS 45.0%
!!! ATCTTTAAAAAAAAAAAATA+AGG + Chr3:91039771-91039790 MsG0380017035.01.T01:intron 5.0%
AGAAACTTGTCCTACCCGCA+AGG + Chr3:91039502-91039521 MsG0380017035.01.T01:intron 50.0%
ATAGATTTAGCCGCCCTTGC+GGG - Chr3:91039519-91039538 None:intergenic 50.0%
CGTCATGTTCGACACAACAC+CGG + Chr3:91038988-91039007 MsG0380017035.01.T01:intron 50.0%
CGTTAGGCCAAATACCTCTC+TGG - Chr3:91041290-91041309 None:intergenic 50.0%
GAAAAGGCCAAATACCTCCC+TGG + Chr3:91041027-91041046 MsG0380017035.01.T01:intron 50.0%
GAAACTTAAAGGACCCAGGG+AGG - Chr3:91041044-91041063 None:intergenic 50.0%
GAAACTTGTCCTACCCGCAA+GGG + Chr3:91039503-91039522 MsG0380017035.01.T01:intron 50.0%
GAAGAGATAGTCGTCAAGGC+CGG - Chr3:91038370-91038389 None:intergenic 50.0%
GCCACTCTCTTCTGTGCTAT+AGG + Chr3:91038741-91038760 MsG0380017035.01.T01:CDS 50.0%
GCCTATAGCACAGAAGAGAG+TGG - Chr3:91038745-91038764 None:intergenic 50.0%
GCGGCTGCGAAGAAAATAGA+AGG - Chr3:91038330-91038349 None:intergenic 50.0%
TCTTCGCATATGGCGTTGCT+CGG + Chr3:91038385-91038404 MsG0380017035.01.T01:CDS 50.0%
TGTGCCTCATCGTTAGTGTC+GGG + Chr3:91041486-91041505 MsG0380017035.01.T01:CDS 50.0%
!! AAAGGACCCAGGGAGGTATT+TGG - Chr3:91041037-91041056 None:intergenic 50.0%
!!! GTGACACCGCTTTTTCTGCT+TGG - Chr3:91041578-91041597 None:intergenic 50.0%
ACGAGTAGTGATCGTCCTGC+TGG + Chr3:91038558-91038577 MsG0380017035.01.T01:CDS 55.0%
CAATGCAGAAGCAGCAACCG+TGG - Chr3:91038619-91038638 None:intergenic 55.0%
GCCTTCATCGGAATCCTCAC+CGG + Chr3:91038348-91038367 MsG0380017035.01.T01:CDS 55.0%
GGAACTGGCAGTGGTGTTCA+CGG + Chr3:91039544-91039563 MsG0380017035.01.T01:intron 55.0%
GGTGAGGATTCCGATGAAGG+CGG - Chr3:91038349-91038368 None:intergenic 55.0%
TTCTTCGCAGCCGCCTTCAT+CGG + Chr3:91038336-91038355 MsG0380017035.01.T01:CDS 55.0%
ACTTGTCCTACCCGCAAGGG+CGG + Chr3:91039506-91039525 MsG0380017035.01.T01:intron 60.0%
ATTTAGCCGCCCTTGCGGGT+AGG - Chr3:91039515-91039534 None:intergenic 60.0%
GATAGTCGTCAAGGCCGGTG+AGG - Chr3:91038365-91038384 None:intergenic 60.0%
GCCGGTGAGGATTCCGATGA+AGG - Chr3:91038352-91038371 None:intergenic 60.0%
GCTCGGCTTCCAGTTTCCAC+TGG + Chr3:91038402-91038421 MsG0380017035.01.T01:CDS 60.0%
TGGCAGTGGTGTTCACGGTC+TGG + Chr3:91039549-91039568 MsG0380017035.01.T01:intron 60.0%
! GTGAGTGCCCGTCTTTTCGC+TGG + Chr3:91040994-91041013 MsG0380017035.01.T01:intron 60.0%
Chromosome Type Strat End Strand Name
Chr3 gene 91038321 91041689 91038321 ID=MsG0380017035.01;Name=MsG0380017035.01
Chr3 mRNA 91038321 91041689 91038321 ID=MsG0380017035.01.T01;Parent=MsG0380017035.01;Name=MsG0380017035.01.T01;_AED=0.44;_eAED=0.44;_QI=0|0|0|1|1|1|2|0|262
Chr3 exon 91038321 91038788 91038321 ID=MsG0380017035.01.T01:exon:20603;Parent=MsG0380017035.01.T01
Chr3 exon 91041369 91041689 91041369 ID=MsG0380017035.01.T01:exon:20604;Parent=MsG0380017035.01.T01
Chr3 CDS 91038321 91038788 91038321 ID=MsG0380017035.01.T01:cds;Parent=MsG0380017035.01.T01
Chr3 CDS 91041369 91041689 91041369 ID=MsG0380017035.01.T01:cds;Parent=MsG0380017035.01.T01
Gene Sequence

>MsG0380017035.01.T01

ATGAAACCTTCTATTTTCTTCGCAGCCGCCTTCATCGGAATCCTCACCGGCCTTGACGACTATCTCTTCGCATATGGCGTTGCTCGGCTTCCAGTTTCCACTGGTTCCTTAATAATAGCATCTCAGCTTGGTTTCACCGCGTTTTTCGCTTTTCTTCTTGTGAAACAAAAATTTACAGCTTTTACTGTAAACGCCATTGTTTTGCTTACGGTTGGTTCTGGTGTTTTGGCTATGCATACGAGTAGTGATCGTCCTGCTGGTGTTTCTGCAAAACAATATGCGATTAGTTTTTCAACCACGGTTGCTGCTTCTGCATTGTATGGATTTGTTTTGCCTTCGGTTAAGTTGGTTTATAAGAAGATTAAACAACCCATCACTTATTCTCTTGTTATGGAATTTCAGTTCGTTATGTGCATGTTTGCCACTCTCTTCTGTGCTATAGGCATGATTGCAAACAATGACTTTAAGGTGATTCCAAGGGAAGCTAGAAATTTTGGGCTAGGAGAAAGCACTTACTATGTTGTGTTGGTTGTTAGTGCGTTAATGTGGCAAGCGTTTTTCTTGGGAGCTATTGGGGTTATTTTTTGTGCCTCATCGTTAGTGTCGGGTATTTTGATTGCTGTGTTGTTACCACTAACAGAAGTGTTGGCAGTTGTTTTCTACAAAGAAAAATTCCAAGCAGAAAAAGCGGTGTCACTTGTACTTTCTCTTTGGGGTTTTGTGTCCTATTTCTATGGTGAGATTAAACATGCTAAGGCAGAAAAGAAGAAACGTGGTTTAGAAATATAG
Protein sequence

>MsG0380017035.01.T01

MKPSIFFAAAFIGILTGLDDYLFAYGVARLPVSTGSLIIASQLGFTAFFAFLLVKQKFTAFTVNAIVLLTVGSGVLAMHTSSDRPAGVSAKQYAISFSTTVAASALYGFVLPSVKLVYKKIKQPITYSLVMEFQFVMCMFATLFCAIGMIANNDFKVIPREARNFGLGESTYYVVLVVSALMWQAFFLGAIGVIFCASSLVSGILIAVLLPLTEVLAVVFYKEKFQAEKAVSLVLSLWGFVSYFYGEIKHAKAEKKKRGLEI*