Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0380017093.01.T01 | XP_003602950.1 | 95.304 | 362 | 17 | 0 | 1 | 362 | 1 | 362 | 0 | 645 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0380017093.01.T01 | Q6YXH8 | 47.075 | 359 | 164 | 9 | 9 | 355 | 12 | 356 | 1.16E-87 | 271 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0380017093.01.T01 | G7J576 | 95.304 | 362 | 17 | 0 | 1 | 362 | 1 | 362 | 0.0 | 645 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MsG0180001105.01 | MsG0380017093.01 | 0.815486 | 9.020989e-52 | 6.228131e-49 |
MsG0380015645.01 | MsG0380017093.01 | 0.811008 | 8.676366e-51 | 5.310788e-48 |
MsG0380016036.01 | MsG0380017093.01 | 0.823268 | 1.517787e-53 | 1.300554e-50 |
MsG0380016294.01 | MsG0380017093.01 | 0.820677 | 6.044056e-53 | 4.813874e-50 |
MsG0380017093.01 | MsG0580025561.01 | -0.816032 | 6.814063e-52 | 4.775140e-49 |
MsG0380017093.01 | MsG0680031146.01 | 0.807978 | 3.881352e-50 | 2.192504e-47 |
MsG0380017093.01 | MsG0680034766.01 | 0.809959 | 1.461863e-50 | 8.702346e-48 |
MsG0380017093.01 | MsG0680034767.01 | 0.821668 | 3.571705e-53 | 2.924660e-50 |
MsG0380017093.01 | MsG0780036517.01 | 0.818974 | 1.480871e-52 | 1.125186e-49 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0380017093.01.T01 | MTR_3g100710 | 95.304 | 362 | 17 | 0 | 1 | 362 | 1 | 362 | 0.0 | 645 |
MsG0380017093.01.T01 | MTR_3g100710 | 87.569 | 362 | 16 | 1 | 1 | 362 | 1 | 333 | 0.0 | 566 |
MsG0380017093.01.T01 | MTR_4g080990 | 75.824 | 364 | 64 | 5 | 1 | 362 | 1 | 342 | 0.0 | 526 |
MsG0380017093.01.T01 | MTR_5g032550 | 51.111 | 360 | 148 | 11 | 1 | 354 | 1 | 338 | 6.19e-104 | 310 |
MsG0380017093.01.T01 | MTR_5g065830 | 48.588 | 354 | 166 | 8 | 3 | 352 | 4 | 345 | 2.00e-102 | 306 |
MsG0380017093.01.T01 | MTR_5g032550 | 54.264 | 258 | 102 | 5 | 1 | 253 | 1 | 247 | 3.25e-82 | 251 |
MsG0380017093.01.T01 | MTR_8g068950 | 40.850 | 306 | 157 | 6 | 65 | 352 | 62 | 361 | 1.19e-63 | 207 |
MsG0380017093.01.T01 | MTR_8g063120 | 42.241 | 232 | 131 | 2 | 62 | 291 | 59 | 289 | 1.97e-53 | 180 |
MsG0380017093.01.T01 | MTR_8g063120 | 47.027 | 185 | 97 | 1 | 62 | 246 | 59 | 242 | 1.02e-52 | 176 |
MsG0380017093.01.T01 | MTR_1g107535 | 36.364 | 297 | 174 | 7 | 62 | 352 | 72 | 359 | 9.74e-51 | 174 |
MsG0380017093.01.T01 | MTR_5g035360 | 37.024 | 289 | 156 | 4 | 9 | 295 | 12 | 276 | 3.11e-50 | 171 |
MsG0380017093.01.T01 | MTR_4g094942 | 37.786 | 262 | 154 | 4 | 95 | 352 | 80 | 336 | 1.77e-49 | 170 |
MsG0380017093.01.T01 | MTR_3g102310 | 37.165 | 261 | 156 | 5 | 96 | 353 | 84 | 339 | 5.40e-46 | 160 |
MsG0380017093.01.T01 | MTR_5g015670 | 39.196 | 199 | 113 | 3 | 95 | 290 | 101 | 294 | 5.43e-37 | 137 |
MsG0380017093.01.T01 | MTR_2g011500 | 35.268 | 224 | 131 | 5 | 99 | 319 | 86 | 298 | 2.35e-35 | 131 |
MsG0380017093.01.T01 | MTR_2g089490 | 32.069 | 290 | 172 | 8 | 74 | 353 | 28 | 302 | 2.43e-35 | 131 |
MsG0380017093.01.T01 | MTR_2g089490 | 31.597 | 288 | 173 | 8 | 74 | 353 | 28 | 299 | 2.28e-33 | 125 |
MsG0380017093.01.T01 | MTR_3g103080 | 34.440 | 241 | 128 | 6 | 8 | 246 | 1 | 213 | 5.46e-31 | 120 |
MsG0380017093.01.T01 | MTR_4g095790 | 29.915 | 234 | 144 | 7 | 97 | 319 | 68 | 292 | 3.39e-15 | 75.9 |
MsG0380017093.01.T01 | MTR_3g060770 | 31.765 | 170 | 102 | 5 | 92 | 255 | 56 | 217 | 4.03e-15 | 75.5 |
MsG0380017093.01.T01 | MTR_3g107970 | 29.121 | 182 | 116 | 4 | 74 | 251 | 225 | 397 | 6.72e-15 | 76.3 |
MsG0380017093.01.T01 | MTR_1g011470 | 28.492 | 179 | 123 | 3 | 73 | 251 | 172 | 345 | 1.60e-14 | 74.7 |
MsG0380017093.01.T01 | MTR_3g060820 | 30.000 | 170 | 105 | 5 | 92 | 255 | 46 | 207 | 2.82e-13 | 69.7 |
MsG0380017093.01.T01 | MTR_3g061680 | 30.286 | 175 | 107 | 6 | 92 | 258 | 46 | 213 | 3.17e-12 | 66.6 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0380017093.01.T01 | AT5G65420 | 50.545 | 275 | 118 | 6 | 62 | 332 | 42 | 302 | 3.36e-82 | 253 |
MsG0380017093.01.T01 | AT5G65420 | 49.123 | 285 | 117 | 7 | 62 | 332 | 42 | 312 | 4.41e-81 | 250 |
MsG0380017093.01.T01 | AT2G22490 | 45.338 | 311 | 159 | 5 | 26 | 329 | 25 | 331 | 6.23e-81 | 251 |
MsG0380017093.01.T01 | AT2G22490 | 45.016 | 311 | 161 | 4 | 26 | 329 | 25 | 332 | 1.40e-80 | 251 |
MsG0380017093.01.T01 | AT5G10440 | 54.545 | 231 | 102 | 1 | 59 | 289 | 31 | 258 | 2.28e-78 | 243 |
MsG0380017093.01.T01 | AT5G65420 | 48.708 | 271 | 118 | 5 | 10 | 278 | 9 | 260 | 1.63e-76 | 237 |
MsG0380017093.01.T01 | AT5G10440 | 56.983 | 179 | 77 | 0 | 59 | 237 | 31 | 209 | 1.62e-66 | 210 |
MsG0380017093.01.T01 | AT5G65420 | 55.932 | 177 | 77 | 1 | 62 | 237 | 42 | 218 | 4.50e-62 | 199 |
MsG0380017093.01.T01 | AT1G70210 | 44.444 | 243 | 127 | 3 | 57 | 295 | 45 | 283 | 5.60e-62 | 202 |
MsG0380017093.01.T01 | AT3G50070 | 41.518 | 224 | 120 | 4 | 97 | 317 | 86 | 301 | 2.85e-46 | 162 |
MsG0380017093.01.T01 | AT4G34160 | 39.604 | 202 | 119 | 2 | 97 | 296 | 87 | 287 | 3.23e-45 | 159 |
MsG0380017093.01.T01 | AT5G67260 | 39.474 | 228 | 122 | 6 | 97 | 319 | 96 | 312 | 3.53e-43 | 154 |
MsG0380017093.01.T01 | AT5G67260 | 39.207 | 227 | 124 | 5 | 97 | 319 | 96 | 312 | 7.90e-43 | 154 |
MsG0380017093.01.T01 | AT4G37630 | 43.421 | 152 | 84 | 2 | 101 | 251 | 76 | 226 | 4.24e-32 | 121 |
MsG0380017093.01.T01 | AT4G03270 | 31.338 | 284 | 168 | 11 | 74 | 352 | 35 | 296 | 3.15e-31 | 120 |
MsG0380017093.01.T01 | AT4G37630 | 42.857 | 154 | 84 | 3 | 101 | 251 | 76 | 228 | 7.58e-31 | 118 |
MsG0380017093.01.T01 | AT4G37630 | 42.857 | 154 | 84 | 3 | 101 | 251 | 76 | 228 | 2.96e-30 | 118 |
MsG0380017093.01.T01 | AT4G03270 | 31.338 | 284 | 167 | 12 | 74 | 352 | 35 | 295 | 2.46e-29 | 115 |
MsG0380017093.01.T01 | AT5G02110 | 26.383 | 235 | 159 | 6 | 64 | 294 | 45 | 269 | 3.79e-18 | 84.7 |
MsG0380017093.01.T01 | AT1G20610 | 31.429 | 210 | 127 | 8 | 82 | 288 | 197 | 392 | 1.21e-15 | 78.2 |
MsG0380017093.01.T01 | AT1G77390 | 29.609 | 179 | 119 | 4 | 74 | 251 | 190 | 362 | 9.91e-15 | 75.5 |
MsG0380017093.01.T01 | AT5G02110 | 30.612 | 147 | 96 | 3 | 140 | 286 | 92 | 232 | 1.03e-14 | 74.3 |
MsG0380017093.01.T01 | AT4G37490 | 29.143 | 175 | 114 | 4 | 77 | 251 | 179 | 343 | 1.48e-14 | 75.1 |
MsG0380017093.01.T01 | AT3G11520 | 30.058 | 173 | 109 | 4 | 91 | 260 | 185 | 348 | 1.65e-14 | 74.7 |
MsG0380017093.01.T01 | AT3G11520 | 30.058 | 173 | 109 | 4 | 91 | 260 | 185 | 348 | 2.61e-14 | 73.9 |
MsG0380017093.01.T01 | AT1G76310 | 26.728 | 217 | 149 | 4 | 72 | 288 | 187 | 393 | 2.02e-13 | 71.6 |
MsG0380017093.01.T01 | AT1G76310 | 28.889 | 180 | 118 | 4 | 72 | 251 | 187 | 356 | 5.76e-13 | 70.1 |
Find 105 sgRNAs with CRISPR-Local
Find 187 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CAATGCAGGTCTTGACTTCT+TGG | 0.156748 | 3:-91854530 | MsG0380017093.01.T01:intron |
AATTGAACTAAAAGGGTTAT+TGG | 0.215800 | 3:-91856016 | MsG0380017093.01.T01:five_prime_UTR |
CTCTCTCACTTCAGTGTCTA+TGG | 0.221876 | 3:+91856180 | None:intergenic |
CTTTATTTAGATTATAGATT+TGG | 0.224239 | 3:+91856065 | None:intergenic |
TCCTCAGCCTCTTGATTTGC+AGG | 0.243856 | 3:-91854990 | MsG0380017093.01.T01:intron |
TAGGTTGCAGTTTGGAGATT+TGG | 0.254751 | 3:-91855721 | MsG0380017093.01.T01:CDS |
GGCTGTAGCTTGCTTATCTT+TGG | 0.277760 | 3:-91855038 | MsG0380017093.01.T01:CDS |
GTTCGAGCACATTTCGGTTT+TGG | 0.278825 | 3:-91855245 | MsG0380017093.01.T01:CDS |
CATGACTCACCTTATAGTTT+TGG | 0.280433 | 3:+91853643 | None:intergenic |
GAATCGATCCAAGTAATTAA+TGG | 0.321350 | 3:+91855202 | None:intergenic |
TATGGTTTGGTTCGAAGTTT+CGG | 0.337739 | 3:+91856198 | None:intergenic |
CAAATCTATAATCTAAATAA+AGG | 0.347585 | 3:-91856064 | MsG0380017093.01.T01:five_prime_UTR |
GAAAGTAACCTTATGGAATA+TGG | 0.352022 | 3:+91853795 | None:intergenic |
TTTATTTAGATTATAGATTT+GGG | 0.357724 | 3:+91856066 | None:intergenic |
TCACTTCAGTGTCTATGGTT+TGG | 0.358014 | 3:+91856185 | None:intergenic |
ACGAGGATTTGTGGCGTTCT+AGG | 0.359940 | 3:-91855872 | MsG0380017093.01.T01:CDS |
TTATCTATCCATTAATTACT+TGG | 0.373505 | 3:-91855210 | MsG0380017093.01.T01:CDS |
TATATATATGATATACTTGC+GGG | 0.384841 | 3:-91853390 | None:intergenic |
TTTGTTTAATTGAACTAAAA+GGG | 0.388432 | 3:-91856023 | MsG0380017093.01.T01:five_prime_UTR |
GTAGTAGCCCAGATGCTAAA+AGG | 0.388944 | 3:-91853878 | MsG0380017093.01.T01:CDS |
CAAAGAGTACCAAAACTATA+AGG | 0.393869 | 3:-91853652 | MsG0380017093.01.T01:three_prime_UTR |
CACTGTTCAATGACATCTCT+TGG | 0.397078 | 3:+91854042 | None:intergenic |
TTTGCTACCATCAATTGCTT+GGG | 0.406060 | 3:+91854453 | None:intergenic |
AAACATTTAGGTACCTTTGA+TGG | 0.406098 | 3:+91854671 | None:intergenic |
TATTTGAATAGGTTGCAGTT+TGG | 0.406265 | 3:-91855729 | MsG0380017093.01.T01:CDS |
CTGGTGCTGATTATTTGAAT+AGG | 0.407191 | 3:-91855740 | MsG0380017093.01.T01:CDS |
CTCTGCAATGGCAACTCATC+AGG | 0.411138 | 3:+91855810 | None:intergenic |
ATTTGCTACCATCAATTGCT+TGG | 0.417048 | 3:+91854452 | None:intergenic |
CTGTGGCAACATGTGTTGTT+GGG | 0.427417 | 3:-91854480 | MsG0380017093.01.T01:CDS |
TTATAGGTTCGAGCACATTT+CGG | 0.428580 | 3:-91855251 | MsG0380017093.01.T01:intron |
GGAATATGGTGGTGGTGGTT+CGG | 0.429440 | 3:-91855904 | MsG0380017093.01.T01:CDS |
TCCTTGGTATTGCATGCTCT+TGG | 0.432351 | 3:-91853592 | MsG0380017093.01.T01:three_prime_UTR |
ATTATTGAAGTGTGTTGAAA+AGG | 0.434517 | 3:-91854066 | MsG0380017093.01.T01:CDS |
TTTAGCTTCAAACACAAACT+TGG | 0.447842 | 3:+91854857 | None:intergenic |
AGCTAAAACCATTCAGAGAA+TGG | 0.449900 | 3:-91854841 | MsG0380017093.01.T01:CDS |
AACACACCCATTGGGCTTTG+AGG | 0.450882 | 3:+91853975 | None:intergenic |
ATTGCAGAGTGAAGAGTGTT+TGG | 0.451360 | 3:-91855796 | MsG0380017093.01.T01:CDS |
CATCATCATTAATCTTAGAA+AGG | 0.451623 | 3:+91854748 | None:intergenic |
TAAAAGCTCCATTCTCTGAA+TGG | 0.457326 | 3:+91854833 | None:intergenic |
AACACCATCATAACGTTGTT+GGG | 0.457610 | 3:+91855833 | None:intergenic |
ATATGGTGGTGGTGGTTCGG+TGG | 0.464818 | 3:-91855901 | MsG0380017093.01.T01:CDS |
GACACCAATGCTGGTGGTGG+TGG | 0.467695 | 3:-91853921 | MsG0380017093.01.T01:CDS |
TGGTGGTGGTGGTTCGGTGG+AGG | 0.471956 | 3:-91855898 | MsG0380017093.01.T01:CDS |
AAACATTCAATGAAGGAGAA+TGG | 0.477187 | 3:+91854771 | None:intergenic |
GATGGGGAATATGGTGGTGG+TGG | 0.478397 | 3:-91855909 | MsG0380017093.01.T01:CDS |
GGGGAAACCCAAGCAATTGA+TGG | 0.479575 | 3:-91854460 | MsG0380017093.01.T01:CDS |
AATGTATCCAACACACCCAT+TGG | 0.480352 | 3:+91853966 | None:intergenic |
AGAGTGTTTGGTTCTGATGT+TGG | 0.485214 | 3:-91855784 | MsG0380017093.01.T01:CDS |
TAACAGTCAAAGAAAATTGG+AGG | 0.485659 | 3:-91853522 | MsG0380017093.01.T01:three_prime_UTR |
AATGCAAAATATTTAACAGC+TGG | 0.493099 | 3:+91853550 | None:intergenic |
TGGAGGTGTACGAGGATTTG+TGG | 0.493364 | 3:-91855881 | MsG0380017093.01.T01:CDS |
GATGATGGGGAATATGGTGG+TGG | 0.494099 | 3:-91855912 | MsG0380017093.01.T01:CDS |
AGCTTGGACAATGCAATTGT+TGG | 0.494353 | 3:-91855059 | MsG0380017093.01.T01:CDS |
GAACACCATCATAACGTTGT+TGG | 0.495114 | 3:+91855832 | None:intergenic |
GCTGTGGCAACATGTGTTGT+TGG | 0.496061 | 3:-91854481 | MsG0380017093.01.T01:CDS |
TCTGATTCAATACATAGAAA+AGG | 0.496974 | 3:-91854419 | MsG0380017093.01.T01:intron |
ATTGGGCTTTGAGGCACACT+AGG | 0.501893 | 3:+91853984 | None:intergenic |
AATTTCAGAAGGGAAGAGCT+TGG | 0.509011 | 3:-91855075 | MsG0380017093.01.T01:intron |
ATGTATCCAACACACCCATT+GGG | 0.513076 | 3:+91853967 | None:intergenic |
ACAGCTGCTGCAATCTCTGA+TGG | 0.518373 | 3:+91854499 | None:intergenic |
CTACAAAAGCTCTGATCCAC+AGG | 0.518487 | 3:+91853839 | None:intergenic |
TTTGATGATGGGGAATATGG+TGG | 0.519402 | 3:-91855915 | MsG0380017093.01.T01:CDS |
CTAGAAACACAATCAAAACT+TGG | 0.521362 | 3:+91855969 | None:intergenic |
GTCAAAGAAAATTGGAGGAG+GGG | 0.526134 | 3:-91853517 | MsG0380017093.01.T01:three_prime_UTR |
AGAAAGGAAACATTCAATGA+AGG | 0.530701 | 3:+91854764 | None:intergenic |
GTGATAAAATGAATAGTCCT+TGG | 0.532264 | 3:-91853608 | MsG0380017093.01.T01:three_prime_UTR |
TGAACCACCACCACCAGCAT+TGG | 0.536808 | 3:+91853917 | None:intergenic |
AGTCATCGATTGGATTCAAA+AGG | 0.537030 | 3:-91855679 | MsG0380017093.01.T01:intron |
ACCTGCAAATCAAGAGGCTG+AGG | 0.539718 | 3:+91854989 | None:intergenic |
CTAGAAATGAAGTCATCGAT+TGG | 0.540927 | 3:-91855689 | MsG0380017093.01.T01:CDS |
TAGTACTCAGCACATTGAAG+TGG | 0.542367 | 3:-91854812 | MsG0380017093.01.T01:CDS |
CAGGGAATTCATACACAGAA+AGG | 0.549830 | 3:+91855180 | None:intergenic |
AGTGTGCCTCAAAGCCCAAT+GGG | 0.552076 | 3:-91853981 | MsG0380017093.01.T01:CDS |
AAAGAGTGTCAGCAATGGCC+TGG | 0.553578 | 3:-91855759 | MsG0380017093.01.T01:CDS |
ATCAGAGATTGCAGCAGCTG+TGG | 0.553736 | 3:-91854497 | MsG0380017093.01.T01:CDS |
ATGACCCAACAACGTTATGA+TGG | 0.554188 | 3:-91855837 | MsG0380017093.01.T01:CDS |
TAGTGTGCCTCAAAGCCCAA+TGG | 0.559807 | 3:-91853982 | MsG0380017093.01.T01:CDS |
AGTCAAAGAAAATTGGAGGA+GGG | 0.559877 | 3:-91853518 | MsG0380017093.01.T01:three_prime_UTR |
CAGTCAAAGAAAATTGGAGG+AGG | 0.561515 | 3:-91853519 | MsG0380017093.01.T01:three_prime_UTR |
TATCTTCTTCAGTGCAAAGA+AGG | 0.566069 | 3:+91855946 | None:intergenic |
GTGAGTCATGAGTGGAAGGT+GGG | 0.576350 | 3:-91853630 | MsG0380017093.01.T01:three_prime_UTR |
TCAAAGCCCAATGGGTGTGT+TGG | 0.579780 | 3:-91853973 | MsG0380017093.01.T01:CDS |
CTTATATCAAGCACCATCAA+AGG | 0.583083 | 3:-91854684 | MsG0380017093.01.T01:intron |
TCATTGAACAGTGTGTTCAC+TGG | 0.586627 | 3:-91854032 | MsG0380017093.01.T01:CDS |
GGTGAGTCATGAGTGGAAGG+TGG | 0.594616 | 3:-91853631 | MsG0380017093.01.T01:three_prime_UTR |
CACTGAAGTGAGAGAGTGAG+TGG | 0.594748 | 3:-91856173 | MsG0380017093.01.T01:five_prime_UTR |
AAACACTCTTCACTCTGCAA+TGG | 0.596088 | 3:+91855798 | None:intergenic |
GAACAGTGTGTTCACTGGCA+AGG | 0.596096 | 3:-91854027 | MsG0380017093.01.T01:CDS |
TTGGGCTTTGAGGCACACTA+GGG | 0.596531 | 3:+91853985 | None:intergenic |
TAAGGTGAGTCATGAGTGGA+AGG | 0.597213 | 3:-91853634 | MsG0380017093.01.T01:three_prime_UTR |
ATCTTTGGCAGCTAAAGTAG+AGG | 0.600255 | 3:-91855023 | MsG0380017093.01.T01:CDS |
ATATATATATGATATACTTG+CGG | 0.602527 | 3:-91853391 | None:intergenic |
AATCCTACCTGCAAATCAAG+AGG | 0.610223 | 3:+91854983 | None:intergenic |
ACTATAAGGTGAGTCATGAG+TGG | 0.611274 | 3:-91853638 | MsG0380017093.01.T01:three_prime_UTR |
CTATTCAAATAATCAGCACC+AGG | 0.612948 | 3:+91855741 | None:intergenic |
ATGATGATAAGAGTTCATCA+AGG | 0.613251 | 3:-91854731 | MsG0380017093.01.T01:CDS |
TGGTTCGGTGGAGGTGTACG+AGG | 0.618407 | 3:-91855889 | MsG0380017093.01.T01:CDS |
GATGACACCAATGCTGGTGG+TGG | 0.635406 | 3:-91853924 | MsG0380017093.01.T01:CDS |
AAAAGTGATGACACCAATGC+TGG | 0.640482 | 3:-91853930 | MsG0380017093.01.T01:CDS |
ATGGATAGATAAGCACAAAG+AGG | 0.659013 | 3:+91855221 | None:intergenic |
GCCAAGAGCATGCAATACCA+AGG | 0.661537 | 3:+91853591 | None:intergenic |
TGTGGCAACATGTGTTGTTG+GGG | 0.663318 | 3:-91854479 | MsG0380017093.01.T01:CDS |
AGGAAGCTAAACAAAACCTG+TGG | 0.680338 | 3:-91853855 | MsG0380017093.01.T01:CDS |
GTAGCCCAGATGCTAAAAGG+AGG | 0.696973 | 3:-91853875 | MsG0380017093.01.T01:CDS |
AGTGATGACACCAATGCTGG+TGG | 0.729525 | 3:-91853927 | MsG0380017093.01.T01:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TTTATTTAGATTATAGATTT+GGG | + | Chr3:91853531-91853550 | None:intergenic | 10.0% |
!! | CAAATCTATAATCTAAATAA+AGG | - | Chr3:91853530-91853549 | MsG0380017093.01.T01:three_prime_UTR | 15.0% |
!! | TTTGTTTAATTGAACTAAAA+GGG | - | Chr3:91853571-91853590 | MsG0380017093.01.T01:three_prime_UTR | 15.0% |
!!! | CTTTATTTAGATTATAGATT+TGG | + | Chr3:91853532-91853551 | None:intergenic | 15.0% |
!!! | TTTAAGTTGATTAATTTTGA+TGG | - | Chr3:91855033-91855052 | MsG0380017093.01.T01:CDS | 15.0% |
!!! | TTTTATGAAATCTTTTTGAT+GGG | - | Chr3:91853999-91854018 | MsG0380017093.01.T01:CDS | 15.0% |
!!! | TTTTGTTTAATTGAACTAAA+AGG | - | Chr3:91853570-91853589 | MsG0380017093.01.T01:three_prime_UTR | 15.0% |
!!! | TTTTTATGAAATCTTTTTGA+TGG | - | Chr3:91853998-91854017 | MsG0380017093.01.T01:CDS | 15.0% |
!! | AATACATAGAAAAGGTAAAA+TGG | - | Chr3:91855183-91855202 | MsG0380017093.01.T01:CDS | 20.0% |
!! | TATTAACAATGTGTTAATTG+TGG | - | Chr3:91855491-91855510 | MsG0380017093.01.T01:intron | 20.0% |
!! | TTATCTATCCATTAATTACT+TGG | - | Chr3:91854384-91854403 | MsG0380017093.01.T01:intron | 20.0% |
!!! | CAATTTTCTTTGTGATTTAT+AGG | - | Chr3:91854327-91854346 | MsG0380017093.01.T01:intron | 20.0% |
!!! | TATTGGATTTTCTGTTATTT+TGG | - | Chr3:91853595-91853614 | MsG0380017093.01.T01:three_prime_UTR | 20.0% |
!!! | TTAATTTTTCATCAAAACAG+TGG | - | Chr3:91854047-91854066 | MsG0380017093.01.T01:CDS | 20.0% |
!!! | TTTTAACAGTCAAAGAAAAT+TGG | - | Chr3:91856069-91856088 | MsG0380017093.01.T01:five_prime_UTR | 20.0% |
! | AATGCAAAATATTTAACAGC+TGG | + | Chr3:91856047-91856066 | None:intergenic | 25.0% |
! | AATTGAACTAAAAGGGTTAT+TGG | - | Chr3:91853578-91853597 | MsG0380017093.01.T01:three_prime_UTR | 25.0% |
! | AGTGAAAACAATCATGAATT+AGG | - | Chr3:91855006-91855025 | MsG0380017093.01.T01:CDS | 25.0% |
! | ATTATTGAAGTGTGTTGAAA+AGG | - | Chr3:91855528-91855547 | MsG0380017093.01.T01:intron | 25.0% |
! | ATTGTGATATGTATCCATAA+AGG | + | Chr3:91854117-91854136 | None:intergenic | 25.0% |
! | CATCATCATTAATCTTAGAA+AGG | + | Chr3:91854849-91854868 | None:intergenic | 25.0% |
! | CTCATATAACAACTTAAACA+AGG | - | Chr3:91855368-91855387 | MsG0380017093.01.T01:intron | 25.0% |
! | GAAGTTCAACACAAAAAAAT+AGG | - | Chr3:91854455-91854474 | MsG0380017093.01.T01:CDS | 25.0% |
! | TCGTTATTCATTAACTTACA+GGG | + | Chr3:91854435-91854454 | None:intergenic | 25.0% |
! | TCTGATTCAATACATAGAAA+AGG | - | Chr3:91855175-91855194 | MsG0380017093.01.T01:intron | 25.0% |
! | TTATGTTTCCAATTTCAGAA+GGG | - | Chr3:91854509-91854528 | MsG0380017093.01.T01:CDS | 25.0% |
! | TTGTGATATGTATCCATAAA+GGG | + | Chr3:91854116-91854135 | None:intergenic | 25.0% |
! | TTTAATGAACTATCCCTTTA+TGG | - | Chr3:91854100-91854119 | MsG0380017093.01.T01:intron | 25.0% |
!! | ATAATAGTTCTCTCTTTTGT+AGG | + | Chr3:91856179-91856198 | None:intergenic | 25.0% |
!! | ATATTGATTGTGAAAACTGA+AGG | - | Chr3:91853961-91853980 | MsG0380017093.01.T01:CDS | 25.0% |
!! | GAATTTTACCATATTCCATA+AGG | - | Chr3:91855791-91855810 | MsG0380017093.01.T01:CDS | 25.0% |
!! | TACATTGTTTTCTTGTCATT+TGG | + | Chr3:91855218-91855237 | None:intergenic | 25.0% |
!!! | GATTTTCTGTTATTTTGGAA+TGG | - | Chr3:91853600-91853619 | MsG0380017093.01.T01:three_prime_UTR | 25.0% |
!!! | TTTTTTTGGTATTGAACTGA+GGG | + | Chr3:91855864-91855883 | None:intergenic | 25.0% |
AAACATTCAATGAAGGAGAA+TGG | + | Chr3:91854826-91854845 | None:intergenic | 30.0% | |
AAACATTTAGGTACCTTTGA+TGG | + | Chr3:91854926-91854945 | None:intergenic | 30.0% | |
AACTTGTCAATTTCAATGCT+TGG | - | Chr3:91854637-91854656 | MsG0380017093.01.T01:intron | 30.0% | |
ACATAGAAAAGGTAAAATGG+TGG | - | Chr3:91855186-91855205 | MsG0380017093.01.T01:CDS | 30.0% | |
AGAAAGGAAACATTCAATGA+AGG | + | Chr3:91854833-91854852 | None:intergenic | 30.0% | |
ATGATGATAAGAGTTCATCA+AGG | - | Chr3:91854863-91854882 | MsG0380017093.01.T01:CDS | 30.0% | |
CTAGAAACACAATCAAAACT+TGG | + | Chr3:91853628-91853647 | None:intergenic | 30.0% | |
CTCAGTTCAATACCAAAAAA+AGG | - | Chr3:91855863-91855882 | MsG0380017093.01.T01:CDS | 30.0% | |
CTCGTTATTCATTAACTTAC+AGG | + | Chr3:91854436-91854455 | None:intergenic | 30.0% | |
GAAAGTAACCTTATGGAATA+TGG | + | Chr3:91855802-91855821 | None:intergenic | 30.0% | |
GAATCGATCCAAGTAATTAA+TGG | + | Chr3:91854395-91854414 | None:intergenic | 30.0% | |
GTGATAAAATGAATAGTCCT+TGG | - | Chr3:91855986-91856005 | MsG0380017093.01.T01:exon | 30.0% | |
GTGTTAATTGTGGTTATTAC+AGG | - | Chr3:91855501-91855520 | MsG0380017093.01.T01:intron | 30.0% | |
GTTATGTTTCCAATTTCAGA+AGG | - | Chr3:91854508-91854527 | MsG0380017093.01.T01:CDS | 30.0% | |
TAACAGTCAAAGAAAATTGG+AGG | - | Chr3:91856072-91856091 | MsG0380017093.01.T01:five_prime_UTR | 30.0% | |
TAGCACATTTGATTGATGAA+TGG | - | Chr3:91854224-91854243 | MsG0380017093.01.T01:intron | 30.0% | |
TATTTGAATAGGTTGCAGTT+TGG | - | Chr3:91853865-91853884 | MsG0380017093.01.T01:CDS | 30.0% | |
TCATCAATTCATCAGATACA+AGG | + | Chr3:91854185-91854204 | None:intergenic | 30.0% | |
TTAGTTCATACATACTCTCA+AGG | - | Chr3:91855256-91855275 | MsG0380017093.01.T01:intron | 30.0% | |
! | AGGACATTATGTGTGTTTTA+TGG | - | Chr3:91855830-91855849 | MsG0380017093.01.T01:CDS | 30.0% |
! | ATAGGCTTTATATTCTGCAT+TGG | - | Chr3:91854473-91854492 | MsG0380017093.01.T01:CDS | 30.0% |
! | ATCCATTGCTTGATAACTAT+TGG | - | Chr3:91854154-91854173 | MsG0380017093.01.T01:intron | 30.0% |
! | ATTTTTCATCAAAACAGTGG+CGG | - | Chr3:91854050-91854069 | MsG0380017093.01.T01:CDS | 30.0% |
! | CATTATGTGTGTTTTATGGA+AGG | - | Chr3:91855834-91855853 | MsG0380017093.01.T01:CDS | 30.0% |
! | TGATGAATTGATGACTTGAA+TGG | - | Chr3:91854191-91854210 | MsG0380017093.01.T01:intron | 30.0% |
! | TTTAGCTTCAAACACAAACT+TGG | + | Chr3:91854740-91854759 | None:intergenic | 30.0% |
! | TTTTAATGATGTTGTGTGTG+TGG | + | Chr3:91853447-91853466 | None:intergenic | 30.0% |
!! | ATAGCAGTGTTTTTGATGAT+GGG | - | Chr3:91853668-91853687 | MsG0380017093.01.T01:three_prime_UTR | 30.0% |
!! | ATTGATGAATGGATTGAGAT+TGG | - | Chr3:91854235-91854254 | MsG0380017093.01.T01:intron | 30.0% |
!! | CAAAGAGTACCAAAACTATA+AGG | - | Chr3:91855942-91855961 | MsG0380017093.01.T01:CDS | 30.0% |
!! | TGTTTTCTTGTCATTTGGAA+AGG | + | Chr3:91855213-91855232 | None:intergenic | 30.0% |
!!! | ACACACATAATGTCCTTTTT+TGG | + | Chr3:91855826-91855845 | None:intergenic | 30.0% |
!!! | ACACATAATGTCCTTTTTTG+GGG | + | Chr3:91855824-91855843 | None:intergenic | 30.0% |
!!! | CACACATAATGTCCTTTTTT+GGG | + | Chr3:91855825-91855844 | None:intergenic | 30.0% |
!!! | CTTTTTTTGGTATTGAACTG+AGG | + | Chr3:91855865-91855884 | None:intergenic | 30.0% |
!!! | GCTATATCTCTTCCTTTTTT+TGG | + | Chr3:91855878-91855897 | None:intergenic | 30.0% |
!!! | TTTTTTGGTATTGAACTGAG+GGG | + | Chr3:91855863-91855882 | None:intergenic | 30.0% |
AACACCATCATAACGTTGTT+GGG | + | Chr3:91853764-91853783 | None:intergenic | 35.0% | |
AGCTAAAACCATTCAGAGAA+TGG | - | Chr3:91854753-91854772 | MsG0380017093.01.T01:CDS | 35.0% | |
AGTCAAAGAAAATTGGAGGA+GGG | - | Chr3:91856076-91856095 | MsG0380017093.01.T01:five_prime_UTR | 35.0% | |
ATGGATAGATAAGCACAAAG+AGG | + | Chr3:91854376-91854395 | None:intergenic | 35.0% | |
CTAGAAATGAAGTCATCGAT+TGG | - | Chr3:91853905-91853924 | MsG0380017093.01.T01:CDS | 35.0% | |
CTATTCAAATAATCAGCACC+AGG | + | Chr3:91853856-91853875 | None:intergenic | 35.0% | |
CTTATATCAAGCACCATCAA+AGG | - | Chr3:91854910-91854929 | MsG0380017093.01.T01:intron | 35.0% | |
GTCCAATAGTTATCAAGCAA+TGG | + | Chr3:91854159-91854178 | None:intergenic | 35.0% | |
TAAAAGCTCCATTCTCTGAA+TGG | + | Chr3:91854764-91854783 | None:intergenic | 35.0% | |
TATCTTCTTCAGTGCAAAGA+AGG | + | Chr3:91853651-91853670 | None:intergenic | 35.0% | |
TCACTTGAGCAATGAAGTTA+GGG | + | Chr3:91854953-91854972 | None:intergenic | 35.0% | |
TTATAGGTTCGAGCACATTT+CGG | - | Chr3:91854343-91854362 | MsG0380017093.01.T01:intron | 35.0% | |
TTCACTTGAGCAATGAAGTT+AGG | + | Chr3:91854954-91854973 | None:intergenic | 35.0% | |
TTTGCTACCATCAATTGCTT+GGG | + | Chr3:91855144-91855163 | None:intergenic | 35.0% | |
! | AAGGTTACTTTCCCCAAAAA+AGG | - | Chr3:91855810-91855829 | MsG0380017093.01.T01:CDS | 35.0% |
! | AGTCATCGATTGGATTCAAA+AGG | - | Chr3:91853915-91853934 | MsG0380017093.01.T01:CDS | 35.0% |
! | ATGATTGTTTTCACTGCAAG+GGG | + | Chr3:91855001-91855020 | None:intergenic | 35.0% |
! | ATTTGCTACCATCAATTGCT+TGG | + | Chr3:91855145-91855164 | None:intergenic | 35.0% |
! | CATGACTCACCTTATAGTTT+TGG | + | Chr3:91855954-91855973 | None:intergenic | 35.0% |
! | CATGATTGTTTTCACTGCAA+GGG | + | Chr3:91855002-91855021 | None:intergenic | 35.0% |
! | GAGATTGGATTAGATTGGAT+TGG | - | Chr3:91854250-91854269 | MsG0380017093.01.T01:intron | 35.0% |
! | GGATTGAGATTGGATTAGAT+TGG | - | Chr3:91854245-91854264 | MsG0380017093.01.T01:intron | 35.0% |
! | GTTTGGAGATTTGGATTTTC+AGG | - | Chr3:91853882-91853901 | MsG0380017093.01.T01:CDS | 35.0% |
! | TCATGATTGTTTTCACTGCA+AGG | + | Chr3:91855003-91855022 | None:intergenic | 35.0% |
!! | CTGGTGCTGATTATTTGAAT+AGG | - | Chr3:91853854-91853873 | MsG0380017093.01.T01:CDS | 35.0% |
!! | GATAGCAGTGTTTTTGATGA+TGG | - | Chr3:91853667-91853686 | MsG0380017093.01.T01:three_prime_UTR | 35.0% |
!! | GTAGAGTCTGAGATTTTCTT+TGG | - | Chr3:91856130-91856149 | MsG0380017093.01.T01:five_prime_UTR | 35.0% |
!! | TATGGTTTGGTTCGAAGTTT+CGG | + | Chr3:91853399-91853418 | None:intergenic | 35.0% |
!! | TTTTGGGGAAAGTAACCTTA+TGG | + | Chr3:91855809-91855828 | None:intergenic | 35.0% |
!!! | CGTTTTAATTGGGTTTGGAT+TGG | - | Chr3:91854076-91854095 | MsG0380017093.01.T01:intron | 35.0% |
!!! | GTTTTTGATGATGGGGAATA+TGG | - | Chr3:91853676-91853695 | MsG0380017093.01.T01:three_prime_UTR | 35.0% |
!!! | TAGCAGTGTTTTTGATGATG+GGG | - | Chr3:91853669-91853688 | MsG0380017093.01.T01:three_prime_UTR | 35.0% |
AAAAGTGATGACACCAATGC+TGG | - | Chr3:91855664-91855683 | MsG0380017093.01.T01:intron | 40.0% | |
AAACACTCTTCACTCTGCAA+TGG | + | Chr3:91853799-91853818 | None:intergenic | 40.0% | |
AATCCTACCTGCAAATCAAG+AGG | + | Chr3:91854614-91854633 | None:intergenic | 40.0% | |
AATGTATCCAACACACCCAT+TGG | + | Chr3:91855631-91855650 | None:intergenic | 40.0% | |
AATTTCAGAAGGGAAGAGCT+TGG | - | Chr3:91854519-91854538 | MsG0380017093.01.T01:CDS | 40.0% | |
ACTATAAGGTGAGTCATGAG+TGG | - | Chr3:91855956-91855975 | MsG0380017093.01.T01:CDS | 40.0% | |
AGCTTGGACAATGCAATTGT+TGG | - | Chr3:91854535-91854554 | MsG0380017093.01.T01:intron | 40.0% | |
AGGAAGCTAAACAAAACCTG+TGG | - | Chr3:91855739-91855758 | MsG0380017093.01.T01:CDS | 40.0% | |
AGTTAGGGAGGGAAACATTT+AGG | + | Chr3:91854938-91854957 | None:intergenic | 40.0% | |
ATCTTTGGCAGCTAAAGTAG+AGG | - | Chr3:91854571-91854590 | MsG0380017093.01.T01:intron | 40.0% | |
ATGACCCAACAACGTTATGA+TGG | - | Chr3:91853757-91853776 | MsG0380017093.01.T01:three_prime_UTR | 40.0% | |
ATGTATCCAACACACCCATT+GGG | + | Chr3:91855630-91855649 | None:intergenic | 40.0% | |
CACTGTTCAATGACATCTCT+TGG | + | Chr3:91855555-91855574 | None:intergenic | 40.0% | |
CAGGGAATTCATACACAGAA+AGG | + | Chr3:91854417-91854436 | None:intergenic | 40.0% | |
CAGTCAAAGAAAATTGGAGG+AGG | - | Chr3:91856075-91856094 | MsG0380017093.01.T01:five_prime_UTR | 40.0% | |
GAACACCATCATAACGTTGT+TGG | + | Chr3:91853765-91853784 | None:intergenic | 40.0% | |
GTCAAAGAAAATTGGAGGAG+GGG | - | Chr3:91856077-91856096 | MsG0380017093.01.T01:five_prime_UTR | 40.0% | |
TAGGTTGCAGTTTGGAGATT+TGG | - | Chr3:91853873-91853892 | MsG0380017093.01.T01:CDS | 40.0% | |
TAGTACTCAGCACATTGAAG+TGG | - | Chr3:91854782-91854801 | MsG0380017093.01.T01:CDS | 40.0% | |
TCACTTCAGTGTCTATGGTT+TGG | + | Chr3:91853412-91853431 | None:intergenic | 40.0% | |
TCATTGAACAGTGTGTTCAC+TGG | - | Chr3:91855562-91855581 | MsG0380017093.01.T01:intron | 40.0% | |
TTGAGCAATGAAGTTAGGGA+GGG | + | Chr3:91854949-91854968 | None:intergenic | 40.0% | |
! | CTTTTGTAGTCATGTGGCAT+GGG | - | Chr3:91855769-91855788 | MsG0380017093.01.T01:CDS | 40.0% |
! | TCAGAGCTTTTGTAGTCATG+TGG | - | Chr3:91855763-91855782 | MsG0380017093.01.T01:CDS | 40.0% |
! | TGATGGTGTGAATTCAATGC+AGG | - | Chr3:91855050-91855069 | MsG0380017093.01.T01:CDS | 40.0% |
!! | AAGCTCTTCCCTTCTGAAAT+TGG | + | Chr3:91854520-91854539 | None:intergenic | 40.0% |
!! | AGAGTGTTTGGTTCTGATGT+TGG | - | Chr3:91853810-91853829 | MsG0380017093.01.T01:three_prime_UTR | 40.0% |
!! | ATTGCAGAGTGAAGAGTGTT+TGG | - | Chr3:91853798-91853817 | MsG0380017093.01.T01:three_prime_UTR | 40.0% |
!! | CTTGATTTGCAGGTAGGATT+TGG | - | Chr3:91854614-91854633 | MsG0380017093.01.T01:intron | 40.0% |
!! | GTCGATTTTTGTGTGCAGAT+TGG | - | Chr3:91854709-91854728 | MsG0380017093.01.T01:CDS | 40.0% |
!! | TGGAAAAAGAGTGTCAGCAA+TGG | - | Chr3:91853830-91853849 | MsG0380017093.01.T01:exon | 40.0% |
!! | TTTGATGATGGGGAATATGG+TGG | - | Chr3:91853679-91853698 | MsG0380017093.01.T01:three_prime_UTR | 40.0% |
CAATGCAGGTCTTGACTTCT+TGG | - | Chr3:91855064-91855083 | MsG0380017093.01.T01:CDS | 45.0% | |
CTCTCTCACTTCAGTGTCTA+TGG | + | Chr3:91853417-91853436 | None:intergenic | 45.0% | |
CTTGAGCAATGAAGTTAGGG+AGG | + | Chr3:91854950-91854969 | None:intergenic | 45.0% | |
GTAGTAGCCCAGATGCTAAA+AGG | - | Chr3:91855716-91855735 | MsG0380017093.01.T01:CDS | 45.0% | |
TAAGGTGAGTCATGAGTGGA+AGG | - | Chr3:91855960-91855979 | MsG0380017093.01.T01:CDS | 45.0% | |
TCCTTGGTATTGCATGCTCT+TGG | - | Chr3:91856002-91856021 | MsG0380017093.01.T01:five_prime_UTR | 45.0% | |
TTTCATCAAAACAGTGGCGG+CGG | - | Chr3:91854053-91854072 | MsG0380017093.01.T01:CDS | 45.0% | |
! | AGCTTCCTCCTTTTAGCATC+TGG | + | Chr3:91855727-91855746 | None:intergenic | 45.0% |
! | CTACAAAAGCTCTGATCCAC+AGG | + | Chr3:91855758-91855777 | None:intergenic | 45.0% |
! | CTGTGGCAACATGTGTTGTT+GGG | - | Chr3:91855114-91855133 | MsG0380017093.01.T01:intron | 45.0% |
! | GCTTCCTCCTTTTAGCATCT+GGG | + | Chr3:91855726-91855745 | None:intergenic | 45.0% |
! | GCTTTTGTAGTCATGTGGCA+TGG | - | Chr3:91855768-91855787 | MsG0380017093.01.T01:CDS | 45.0% |
! | GTTCGAGCACATTTCGGTTT+TGG | - | Chr3:91854349-91854368 | MsG0380017093.01.T01:intron | 45.0% |
! | TGTGGCAACATGTGTTGTTG+GGG | - | Chr3:91855115-91855134 | MsG0380017093.01.T01:intron | 45.0% |
! | TTGTTTTCACTGCAAGGGGT+TGG | + | Chr3:91854997-91855016 | None:intergenic | 45.0% |
!! | GGCTGTAGCTTGCTTATCTT+TGG | - | Chr3:91854556-91854575 | MsG0380017093.01.T01:intron | 45.0% |
AACACACCCATTGGGCTTTG+AGG | + | Chr3:91855622-91855641 | None:intergenic | 50.0% | |
ACAGCTGCTGCAATCTCTGA+TGG | + | Chr3:91855098-91855117 | None:intergenic | 50.0% | |
ACCTGCAAATCAAGAGGCTG+AGG | + | Chr3:91854608-91854627 | None:intergenic | 50.0% | |
ACGAGGATTTGTGGCGTTCT+AGG | - | Chr3:91853722-91853741 | MsG0380017093.01.T01:three_prime_UTR | 50.0% | |
AGTGATGACACCAATGCTGG+TGG | - | Chr3:91855667-91855686 | MsG0380017093.01.T01:intron | 50.0% | |
AGTGTGCCTCAAAGCCCAAT+GGG | - | Chr3:91855613-91855632 | MsG0380017093.01.T01:intron | 50.0% | |
ATCAGAGATTGCAGCAGCTG+TGG | - | Chr3:91855097-91855116 | MsG0380017093.01.T01:intron | 50.0% | |
CACTGAAGTGAGAGAGTGAG+TGG | - | Chr3:91853421-91853440 | MsG0380017093.01.T01:three_prime_UTR | 50.0% | |
CTCTGCAATGGCAACTCATC+AGG | + | Chr3:91853787-91853806 | None:intergenic | 50.0% | |
GAACAGTGTGTTCACTGGCA+AGG | - | Chr3:91855567-91855586 | MsG0380017093.01.T01:intron | 50.0% | |
GCTGTGGCAACATGTGTTGT+TGG | - | Chr3:91855113-91855132 | MsG0380017093.01.T01:intron | 50.0% | |
GGGGAAACCCAAGCAATTGA+TGG | - | Chr3:91855134-91855153 | MsG0380017093.01.T01:intron | 50.0% | |
GTAGCCCAGATGCTAAAAGG+AGG | - | Chr3:91855719-91855738 | MsG0380017093.01.T01:CDS | 50.0% | |
GTGAGTCATGAGTGGAAGGT+GGG | - | Chr3:91855964-91855983 | MsG0380017093.01.T01:CDS | 50.0% | |
TAGTGTGCCTCAAAGCCCAA+TGG | - | Chr3:91855612-91855631 | MsG0380017093.01.T01:intron | 50.0% | |
TCAAAGCCCAATGGGTGTGT+TGG | - | Chr3:91855621-91855640 | MsG0380017093.01.T01:intron | 50.0% | |
! | GCCAAGAGCATGCAATACCA+AGG | + | Chr3:91856006-91856025 | None:intergenic | 50.0% |
! | TGGAGGTGTACGAGGATTTG+TGG | - | Chr3:91853713-91853732 | MsG0380017093.01.T01:three_prime_UTR | 50.0% |
!! | AAAGAGTGTCAGCAATGGCC+TGG | - | Chr3:91853835-91853854 | MsG0380017093.01.T01:exon | 50.0% |
!! | ATTGGGCTTTGAGGCACACT+AGG | + | Chr3:91855613-91855632 | None:intergenic | 50.0% |
!! | CAGCCTCTTGATTTGCAGGT+AGG | - | Chr3:91854608-91854627 | MsG0380017093.01.T01:intron | 50.0% |
!! | GATGATGGGGAATATGGTGG+TGG | - | Chr3:91853682-91853701 | MsG0380017093.01.T01:three_prime_UTR | 50.0% |
!! | GGAATATGGTGGTGGTGGTT+CGG | - | Chr3:91853690-91853709 | MsG0380017093.01.T01:three_prime_UTR | 50.0% |
!! | TCCTCAGCCTCTTGATTTGC+AGG | - | Chr3:91854604-91854623 | MsG0380017093.01.T01:intron | 50.0% |
!! | TTGGGCTTTGAGGCACACTA+GGG | + | Chr3:91855612-91855631 | None:intergenic | 50.0% |
!!! | GGCGGCGTTTTAATTGGGTT+TGG | - | Chr3:91854071-91854090 | MsG0380017093.01.T01:CDS | 50.0% |
GATGACACCAATGCTGGTGG+TGG | - | Chr3:91855670-91855689 | MsG0380017093.01.T01:intron | 55.0% | |
GGTGAGTCATGAGTGGAAGG+TGG | - | Chr3:91855963-91855982 | MsG0380017093.01.T01:CDS | 55.0% | |
TGAACCACCACCACCAGCAT+TGG | + | Chr3:91855680-91855699 | None:intergenic | 55.0% | |
!! | AGTGGCGGCGGCGTTTTAAT+TGG | - | Chr3:91854065-91854084 | MsG0380017093.01.T01:CDS | 55.0% |
!! | ATATGGTGGTGGTGGTTCGG+TGG | - | Chr3:91853693-91853712 | MsG0380017093.01.T01:three_prime_UTR | 55.0% |
!! | GATGGGGAATATGGTGGTGG+TGG | - | Chr3:91853685-91853704 | MsG0380017093.01.T01:three_prime_UTR | 55.0% |
!!! | GTGGCGGCGGCGTTTTAATT+GGG | - | Chr3:91854066-91854085 | MsG0380017093.01.T01:CDS | 55.0% |
!! | GACACCAATGCTGGTGGTGG+TGG | - | Chr3:91855673-91855692 | MsG0380017093.01.T01:intron | 60.0% |
!! | TGGTTCGGTGGAGGTGTACG+AGG | - | Chr3:91853705-91853724 | MsG0380017093.01.T01:three_prime_UTR | 60.0% |
!! | TGGTGGTGGTGGTTCGGTGG+AGG | - | Chr3:91853696-91853715 | MsG0380017093.01.T01:three_prime_UTR | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
Chr3 | gene | 91853393 | 91856223 | 91853393 | ID=MsG0380017093.01;Name=MsG0380017093.01 |
Chr3 | mRNA | 91853393 | 91856223 | 91853393 | ID=MsG0380017093.01.T01;Parent=MsG0380017093.01;Name=MsG0380017093.01.T01;_AED=0.45;_eAED=0.45;_QI=226|1|1|1|1|1|6|446|362 |
Chr3 | exon | 91853393 | 91854093 | 91853393 | ID=MsG0380017093.01.T01:exon:31025;Parent=MsG0380017093.01.T01 |
Chr3 | exon | 91854420 | 91854544 | 91854420 | ID=MsG0380017093.01.T01:exon:31024;Parent=MsG0380017093.01.T01 |
Chr3 | exon | 91854685 | 91854889 | 91854685 | ID=MsG0380017093.01.T01:exon:31023;Parent=MsG0380017093.01.T01 |
Chr3 | exon | 91854991 | 91855089 | 91854991 | ID=MsG0380017093.01.T01:exon:31022;Parent=MsG0380017093.01.T01 |
Chr3 | exon | 91855181 | 91855267 | 91855181 | ID=MsG0380017093.01.T01:exon:31021;Parent=MsG0380017093.01.T01 |
Chr3 | exon | 91855680 | 91856223 | 91855680 | ID=MsG0380017093.01.T01:exon:31020;Parent=MsG0380017093.01.T01 |
Chr3 | five_prime_UTR | 91855998 | 91856223 | 91855998 | ID=MsG0380017093.01.T01:five_prime_utr;Parent=MsG0380017093.01.T01 |
Chr3 | CDS | 91855680 | 91855997 | 91855680 | ID=MsG0380017093.01.T01:cds;Parent=MsG0380017093.01.T01 |
Chr3 | CDS | 91855181 | 91855267 | 91855181 | ID=MsG0380017093.01.T01:cds;Parent=MsG0380017093.01.T01 |
Chr3 | CDS | 91854991 | 91855089 | 91854991 | ID=MsG0380017093.01.T01:cds;Parent=MsG0380017093.01.T01 |
Chr3 | CDS | 91854685 | 91854889 | 91854685 | ID=MsG0380017093.01.T01:cds;Parent=MsG0380017093.01.T01 |
Chr3 | CDS | 91854420 | 91854544 | 91854420 | ID=MsG0380017093.01.T01:cds;Parent=MsG0380017093.01.T01 |
Chr3 | CDS | 91853839 | 91854093 | 91853839 | ID=MsG0380017093.01.T01:cds;Parent=MsG0380017093.01.T01 |
Chr3 | three_prime_UTR | 91853393 | 91853838 | 91853393 | ID=MsG0380017093.01.T01:three_prime_utr;Parent=MsG0380017093.01.T01 |
Gene Sequence |
Protein sequence |