AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380016294.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380016294.01.T01 MTR_3g087220 92.982 570 8 1 1 538 1 570 0.0 1098
MsG0380016294.01.T01 MTR_5g071360 73.741 556 114 1 1 524 1 556 0.0 871
MsG0380016294.01.T01 MTR_3g464580 71.002 569 130 3 1 534 1 569 0.0 853
MsG0380016294.01.T01 MTR_5g071360 72.745 510 107 1 1 478 1 510 0.0 788
MsG0380016294.01.T01 MTR_3g464580 71.709 509 111 2 1 476 1 509 0.0 773
MsG0380016294.01.T01 MTR_3g464580 72.098 448 91 3 1 415 1 447 0.0 675
MsG0380016294.01.T01 MTR_5g069310 69.298 114 35 0 411 524 2 115 8.34e-52 173
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380016294.01.T01 AT5G10240 80.144 554 78 1 1 522 1 554 0.0 944
MsG0380016294.01.T01 AT5G65010 80.182 550 77 1 1 518 1 550 0.0 939
MsG0380016294.01.T01 AT5G65010 80.036 551 77 2 1 518 1 551 0.0 935
MsG0380016294.01.T01 AT5G10240 79.603 554 80 2 1 522 1 553 0.0 932
MsG0380016294.01.T01 AT3G47340 71.327 565 129 2 1 533 1 564 0.0 868
MsG0380016294.01.T01 AT3G47340 72.047 508 110 1 1 476 1 508 0.0 790
MsG0380016294.01.T01 AT3G47340 71.942 417 85 1 1 385 1 417 0.0 649
MsG0380016294.01.T01 AT3G47340 70.199 302 58 1 116 385 1 302 2.75e-158 455

Find 153 sgRNAs with CRISPR-Local

Find 324 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGGCATTACCCCTCTTTATT+TGG 0.114873 3:+81633419 MsG0380016294.01.T01:CDS
CAGCAGGCTAATAATATTTA+TGG 0.142182 3:+81637451 MsG0380016294.01.T01:three_prime_UTR
CCAAGCCGAAGTTGATTTAT+TGG 0.156555 3:-81636105 None:intergenic
CCAAGTACAACCATGCTTTA+AGG 0.164598 3:+81637415 MsG0380016294.01.T01:three_prime_UTR
ATACAAACCTTTGGCAAATA+TGG 0.166150 3:-81636594 None:intergenic
GTTCTATGGCATTAGGTTAA+TGG 0.192017 3:+81633117 MsG0380016294.01.T01:intron
TTCTCTATCCTTTCAATATC+AGG 0.209485 3:-81636534 None:intergenic
GAAGGTTCAGATGAAATATT+TGG 0.221785 3:+81635856 MsG0380016294.01.T01:CDS
CAAATCATTGGGAGTGAAAA+TGG 0.232355 3:+81635822 MsG0380016294.01.T01:CDS
TTGGACTGATGGGCAAATTT+AGG 0.235413 3:-81637519 None:intergenic
TACCCCTCTTTATTTGGGTT+GGG 0.252968 3:+81633425 MsG0380016294.01.T01:CDS
GGCATTACCCCTCTTTATTT+GGG 0.262355 3:+81633420 MsG0380016294.01.T01:CDS
TTCTATGGCATTAGGTTAAT+GGG 0.266561 3:+81633118 MsG0380016294.01.T01:intron
CTTCCTTGTTAGGCGCCTTA+TGG 0.267987 3:-81635894 None:intergenic
GCTATTGTGGACCCTACTTC+TGG 0.276442 3:+81632946 MsG0380016294.01.T01:CDS
TGATGAAGCTCTTCCTTGTT+AGG 0.297491 3:-81635904 None:intergenic
TGCAGTGGCCAATAGATATT+TGG 0.298358 3:+81635348 MsG0380016294.01.T01:CDS
TTCGATGATGCGAGCGCGTT+TGG 0.303802 3:-81632839 None:intergenic
ATTGCTGCTCGTGATGCTAT+TGG 0.320060 3:+81633399 MsG0380016294.01.T01:CDS
TGTGATTAGTATGAAGAATA+TGG 0.322666 3:+81633306 MsG0380016294.01.T01:intron
CAATAAATCAACTTCGGCTT+GGG 0.326748 3:+81636106 MsG0380016294.01.T01:CDS
TATCGATCCGGAGTGGAAAA+TGG 0.332343 3:+81636184 MsG0380016294.01.T01:CDS
CGAACTTCATTTCACAGTTC+AGG 0.340310 3:+81635599 MsG0380016294.01.T01:CDS
CCTTAAAGCATGGTTGTACT+TGG 0.352664 3:-81637415 None:intergenic
AAATGTATATATCTGACTTC+GGG 0.353875 3:+81637325 MsG0380016294.01.T01:three_prime_UTR
TTACCCCTCTTTATTTGGGT+TGG 0.360345 3:+81633424 MsG0380016294.01.T01:CDS
ATGGTATTTATAGTGTTATC+TGG 0.361735 3:+81637583 MsG0380016294.01.T01:three_prime_UTR
CAATCCAGCATGGTCTTTAG+AGG 0.380651 3:-81637297 None:intergenic
AGAGGCACGTGTACCGTTCT+TGG 0.383283 3:+81636133 MsG0380016294.01.T01:CDS
ACCCCTCTTTATTTGGGTTG+GGG 0.385041 3:+81633426 MsG0380016294.01.T01:CDS
TAAAACTACTGAAGAGAGTT+GGG 0.386734 3:+81637371 MsG0380016294.01.T01:three_prime_UTR
TGTTCTGTTGTCCGGAGGAC+TGG 0.389790 3:+81635309 MsG0380016294.01.T01:CDS
CCCTTTGGTGTTCTGTTGTC+CGG 0.394985 3:+81635301 MsG0380016294.01.T01:CDS
TTACATCATATGTTTCAATA+TGG 0.407697 3:-81635753 None:intergenic
CCTTCAGGTCGTGCCGCGCT+TGG 0.420882 3:+81637211 MsG0380016294.01.T01:CDS
GCTGCCAGGTCAACAGTTCC+AGG 0.421132 3:+81637118 MsG0380016294.01.T01:CDS
TACTTTCTGCATTGGTATAG+AGG 0.424643 3:+81635411 MsG0380016294.01.T01:CDS
CAGTTGGATTGATGGTTTGA+AGG 0.424749 3:+81636739 MsG0380016294.01.T01:CDS
GTCGGATACAGTTGGATTGA+TGG 0.430598 3:+81636731 MsG0380016294.01.T01:CDS
GTTGGATCATAGCGTGTTGA+TGG 0.432444 3:-81634588 None:intergenic
AGTATCAGCCAAATATCTAT+TGG 0.434666 3:-81635356 None:intergenic
TCTTTAGAGGGATCCATTGT+CGG 0.443265 3:-81637284 None:intergenic
TATTGAAAGGATAGAGAAAT+GGG 0.451135 3:+81636539 MsG0380016294.01.T01:CDS
CATGCCACACTAGGGCCTCC+TGG 0.457389 3:-81637136 None:intergenic
ATATTGAAAGGATAGAGAAA+TGG 0.459884 3:+81636538 MsG0380016294.01.T01:CDS
TATTTGGGTTGGGGCCATGA+TGG 0.462409 3:+81633435 MsG0380016294.01.T01:CDS
TACTGCAAAAGCTGTGGAAT+GGG 0.464980 3:+81637162 MsG0380016294.01.T01:CDS
AGGTTACCTGTATTTCCATA+AGG 0.465018 3:+81635879 MsG0380016294.01.T01:CDS
TACTGTCAAAAGTACACAGT+TGG 0.468294 3:-81632729 None:intergenic
AAATCTCATCAATTTCGAAC+TGG 0.470336 3:+81633177 MsG0380016294.01.T01:CDS
GCAGTACTGCATGCCACACT+AGG 0.471392 3:-81637145 None:intergenic
TAGGCGCCTTATGGAAATAC+AGG 0.475864 3:-81635885 None:intergenic
AGAAGAGTTTGTTGATATGC+TGG 0.476984 3:+81633329 MsG0380016294.01.T01:CDS
AAAGAGGTAGCAAATTATCT+TGG 0.479356 3:+81635564 MsG0380016294.01.T01:CDS
AAAATGTATATATCTGACTT+CGG 0.479389 3:+81637324 MsG0380016294.01.T01:three_prime_UTR
AAGTTGATTTATTGGCTCTC+AGG 0.481018 3:-81636097 None:intergenic
CTCGTCACTTGTTGCTGCAG+TGG 0.482865 3:+81635333 MsG0380016294.01.T01:CDS
CAATGCAAACCACTCCAATC+AGG 0.489191 3:-81632889 None:intergenic
ATAAAACTACTGAAGAGAGT+TGG 0.489833 3:+81637370 MsG0380016294.01.T01:three_prime_UTR
CACAAAGCGCATTGGACTGA+TGG 0.490594 3:-81637530 None:intergenic
TACTGACACTGCCCGTCAGT+GGG 0.497561 3:+81635375 MsG0380016294.01.T01:CDS
CTTTAGAGGGATCCATTGTC+GGG 0.500502 3:-81637283 None:intergenic
AGAGGTTGATCTCCAGAAGT+AGG 0.500746 3:-81632958 None:intergenic
GATACGTACGGTGACAATAA+CGG 0.505224 3:-81632998 None:intergenic
CATTTCAACAGGGTGCTGCC+AGG 0.506834 3:+81637104 MsG0380016294.01.T01:intron
CCAATAAATCAACTTCGGCT+TGG 0.506921 3:+81636105 MsG0380016294.01.T01:CDS
GTGCGGAATCTTAGCAGTGT+TGG 0.507911 3:+81632795 MsG0380016294.01.T01:CDS
TGCGGAATCTTAGCAGTGTT+GGG 0.508911 3:+81632796 MsG0380016294.01.T01:CDS
CAGTTACATACTTTCTGCAT+TGG 0.510357 3:+81635403 MsG0380016294.01.T01:CDS
AACTTCGGCTTGGGGTATAG+AGG 0.510802 3:+81636115 MsG0380016294.01.T01:CDS
TCATCAACGTCTTGCTATTG+TGG 0.511777 3:+81632933 MsG0380016294.01.T01:CDS
ACTGTCAAAAGTACACAGTT+GGG 0.513941 3:-81632728 None:intergenic
CACTGCCATGGATATCGATC+CGG 0.514410 3:+81636172 MsG0380016294.01.T01:CDS
TGCGACATAGAGGACCTGAT+TGG 0.528704 3:+81632875 MsG0380016294.01.T01:CDS
GTCTTGTCATAGTTGTAAAG+AGG 0.529718 3:-81632976 None:intergenic
TACAATGGCACAAAGCGCAT+TGG 0.531163 3:-81637538 None:intergenic
GGAGTGAAAATGGTTCTGTC+TGG 0.532933 3:+81635832 MsG0380016294.01.T01:CDS
TTTCTGGACATAAGAAACAT+TGG 0.539930 3:-81635796 None:intergenic
GCCTCCTGGAACTGTTGACC+TGG 0.540604 3:-81637122 None:intergenic
GGTTCAGATGAAATATTTGG+AGG 0.542536 3:+81635859 MsG0380016294.01.T01:CDS
AGCTGCATGAACACCAAGCG+CGG 0.545486 3:-81637224 None:intergenic
TTTAACTATTAAATCTACAA+TGG 0.547382 3:-81637553 None:intergenic
ATAAATTCTTTATCCAAGAA+CGG 0.547808 3:-81636146 None:intergenic
TGGCCCCAACCCAAATAAAG+AGG 0.550694 3:-81633429 None:intergenic
AAGTGACGAGTCCAGTCCTC+CGG 0.552950 3:-81635320 None:intergenic
GATCCCTCTAAAGACCATGC+TGG 0.556208 3:+81637293 MsG0380016294.01.T01:exon
AAACACTCCTACCACAAAAG+AGG 0.557038 3:+81636905 MsG0380016294.01.T01:CDS
AAAATAAAAGAGCCCGACAA+TGG 0.557915 3:+81637271 MsG0380016294.01.T01:CDS
GAGGTTGATCTCCAGAAGTA+GGG 0.558161 3:-81632957 None:intergenic
TGTTCATGCAGCTGCATACA+AGG 0.562587 3:+81637234 MsG0380016294.01.T01:CDS
AACACTCCTACCACAAAAGA+GGG 0.564176 3:+81636906 MsG0380016294.01.T01:CDS
CCAAGCGCGGCACGACCTGA+AGG 0.564595 3:-81637211 None:intergenic
TTTGCGTGAGGCCTTTGAGA+GGG 0.566242 3:+81634614 MsG0380016294.01.T01:CDS
ATGATGACTGATGTACCCTT+TGG 0.566933 3:+81635286 MsG0380016294.01.T01:CDS
GGCCCCAACCCAAATAAAGA+GGG 0.568153 3:-81633428 None:intergenic
ACAAAGCGCATTGGACTGAT+GGG 0.569774 3:-81637529 None:intergenic
AGTTTGTTGATATGCTGGAT+GGG 0.570850 3:+81633334 MsG0380016294.01.T01:CDS
AATCTTAGCAGTGTTGGGTG+TGG 0.573813 3:+81632801 MsG0380016294.01.T01:CDS
AGAATTTATCAACACTGCCA+TGG 0.574909 3:+81636160 MsG0380016294.01.T01:CDS
AAGGCCTCACGCAAAACCGT+TGG 0.575646 3:-81634606 None:intergenic
TAACTGTGATCCCCACTGAC+GGG 0.578963 3:-81635386 None:intergenic
GCGGCAGCCACATACCATCA+TGG 0.580966 3:-81633449 None:intergenic
AGTTCTAAAACCTTAAAGCA+TGG 0.581950 3:-81637425 None:intergenic
CCGGACAACAGAACACCAAA+GGG 0.583577 3:-81635301 None:intergenic
AGATAAAGCCTGATATTGAA+AGG 0.584487 3:+81636526 MsG0380016294.01.T01:intron
GGATTTGAGAGCCGCAAAAG+AGG 0.588975 3:+81635548 MsG0380016294.01.T01:CDS
ATACTGACACTGCCCGTCAG+TGG 0.589598 3:+81635374 MsG0380016294.01.T01:CDS
GCGATGGTGTCGGATACAGT+TGG 0.589745 3:+81636723 MsG0380016294.01.T01:CDS
TTTCCATAAGGCGCCTAACA+AGG 0.590033 3:+81635891 MsG0380016294.01.T01:CDS
CAAAAGAGGGATACCACTAC+AGG 0.590975 3:+81636919 MsG0380016294.01.T01:CDS
GAGAGCCAATAAATCAACTT+CGG 0.592271 3:+81636100 MsG0380016294.01.T01:CDS
AATAAATCAACTTCGGCTTG+GGG 0.592392 3:+81636107 MsG0380016294.01.T01:CDS
GAGTTTGTTGATATGCTGGA+TGG 0.592504 3:+81633333 MsG0380016294.01.T01:CDS
GTAACTGTGATCCCCACTGA+CGG 0.594247 3:-81635387 None:intergenic
TTGCAGGAGGATTAAGAAGG+TGG 0.595137 3:+81634535 MsG0380016294.01.T01:intron
GGAAGGTATAGATGCACTTG+AGG 0.595941 3:+81635720 MsG0380016294.01.T01:intron
ATCAACACGCTATGATCCAA+CGG 0.596803 3:+81634590 MsG0380016294.01.T01:CDS
GCATCATCGAATTGTCTCGC+AGG 0.596887 3:+81632851 MsG0380016294.01.T01:CDS
TCTCGCAGGTTGCGACATAG+AGG 0.597101 3:+81632865 MsG0380016294.01.T01:CDS
CCACTCCGGATCGATATCCA+TGG 0.600070 3:-81636177 None:intergenic
TGAGAATCCATATTTGCCAA+AGG 0.602556 3:+81636587 MsG0380016294.01.T01:CDS
AATCCAGCATGGTCTTTAGA+GGG 0.604010 3:-81637296 None:intergenic
AAAATGGTTCTGTCTGGAGA+AGG 0.606208 3:+81635838 MsG0380016294.01.T01:CDS
GGAATAGCTAACCCTCTCAA+AGG 0.609261 3:-81634625 None:intergenic
TCCGGACAACAGAACACCAA+AGG 0.611807 3:-81635302 None:intergenic
GTACTGCAAAAGCTGTGGAA+TGG 0.613846 3:+81637161 MsG0380016294.01.T01:CDS
GAACAGTTCAGCGATGGTGT+CGG 0.616755 3:+81636713 MsG0380016294.01.T01:CDS
GCACATATTGTACAGGCAGA+AGG 0.619788 3:+81636691 MsG0380016294.01.T01:intron
TCTTTGCAGGAGGATTAAGA+AGG 0.620740 3:+81634532 MsG0380016294.01.T01:intron
CAGTACTGCATGCCACACTA+GGG 0.621411 3:-81637144 None:intergenic
CAGAAGGAACAGTTCAGCGA+TGG 0.621633 3:+81636707 MsG0380016294.01.T01:CDS
CAAGCGCGGCACGACCTGAA+GGG 0.622971 3:-81637210 None:intergenic
TTATCAGATATACTAAAAGG+TGG 0.626788 3:+81637481 MsG0380016294.01.T01:three_prime_UTR
TTTGGTGTTCTGTTGTCCGG+AGG 0.633191 3:+81635304 MsG0380016294.01.T01:CDS
GAGTTAAACGGAGCTAAACA+AGG 0.634851 3:+81632675 None:intergenic
TCTATGGCATTAGGTTAATG+GGG 0.644846 3:+81633119 MsG0380016294.01.T01:intron
TTGTTGGCAGCCGTCATGTG+CGG 0.647753 3:+81632778 MsG0380016294.01.T01:exon
CATAGAGGACCTGATTGGAG+TGG 0.648591 3:+81632880 MsG0380016294.01.T01:CDS
AAAACTACTGAAGAGAGTTG+GGG 0.650442 3:+81637372 MsG0380016294.01.T01:three_prime_UTR
AGTTCCAGGAGGCCCTAGTG+TGG 0.651099 3:+81637132 MsG0380016294.01.T01:CDS
CTGTGGAATGGGATGCAGCA+TGG 0.665004 3:+81637173 MsG0380016294.01.T01:CDS
TAGCAAGACGTTGATGAGCG+AGG 0.666348 3:-81632927 None:intergenic
TGCTAAGATTCCGCACATGA+CGG 0.669260 3:-81632788 None:intergenic
CCATGGATATCGATCCGGAG+TGG 0.674824 3:+81636177 MsG0380016294.01.T01:CDS
GCCCCAACCCAAATAAAGAG+GGG 0.687236 3:-81633427 None:intergenic
GAACTGTGAAATGAAGTTCG+TGG 0.696854 3:-81635596 None:intergenic
GCCAGGTCAACAGTTCCAGG+AGG 0.705953 3:+81637121 MsG0380016294.01.T01:CDS
ATGCAGTACTGCAAAAGCTG+TGG 0.707096 3:+81637156 MsG0380016294.01.T01:CDS
ATTTGCTCTGAGAACCATGG+TGG 0.708717 3:-81634564 None:intergenic
GGAATTTGCTCTGAGAACCA+TGG 0.723639 3:-81634567 None:intergenic
ACTGACACTGCCCGTCAGTG+GGG 0.727167 3:+81635376 MsG0380016294.01.T01:CDS
GAAGGTGGTACAATCCACCA+TGG 0.728627 3:+81634550 MsG0380016294.01.T01:CDS
CTGTGAAATGAAGTTCGTGG+TGG 0.746248 3:-81635593 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAATTACATAAAAATATG+GGG - Chr3:81635973-81635992 None:intergenic 10.0%
!! TTAATAGTTAAAAATTTCAA+TGG + Chr3:81637564-81637583 MsG0380016294.01.T01:three_prime_UTR 10.0%
!! TGAATTAGATATATCATTTA+TGG + Chr3:81634255-81634274 MsG0380016294.01.T01:intron 15.0%
!! TTTAACTATTAAATCTACAA+TGG - Chr3:81637556-81637575 None:intergenic 15.0%
!!! AATTATGGTATATTACTTTT+CGG - Chr3:81635939-81635958 None:intergenic 15.0%
!!! AATTTATTTTACAAGAAAAC+TGG - Chr3:81636385-81636404 None:intergenic 15.0%
!!! TTCATGTTCAAATTTAAAAT+TGG - Chr3:81637031-81637050 None:intergenic 15.0%
!! AAAAATGTTACAATAAGAAG+CGG - Chr3:81633471-81633490 None:intergenic 20.0%
!! AAAATGTATATATCTGACTT+CGG + Chr3:81637324-81637343 MsG0380016294.01.T01:three_prime_UTR 20.0%
!! ACAGTTTAAAAAAATTACAC+AGG - Chr3:81633638-81633657 None:intergenic 20.0%
!! ACATATCTGTATAAACATTA+AGG + Chr3:81634021-81634040 MsG0380016294.01.T01:intron 20.0%
!! ATAAATTCTTTATCCAAGAA+CGG - Chr3:81636149-81636168 None:intergenic 20.0%
!! CATATAACTACTATTACTTA+TGG - Chr3:81635487-81635506 None:intergenic 20.0%
!! GACATTATATACTTGATAAA+TGG + Chr3:81636834-81636853 MsG0380016294.01.T01:intron 20.0%
!! TAAAAAACATCAATCAGATT+TGG + Chr3:81632750-81632769 MsG0380016294.01.T01:five_prime_UTR 20.0%
!! TAACCAAGAAAAAGTTAAAA+AGG - Chr3:81635233-81635252 None:intergenic 20.0%
!! TAGATATATCATTTATGGAA+GGG + Chr3:81634260-81634279 MsG0380016294.01.T01:intron 20.0%
!! TATCAAGTATATAATGTCAA+TGG - Chr3:81636832-81636851 None:intergenic 20.0%
!! TTACATCATATGTTTCAATA+TGG - Chr3:81635756-81635775 None:intergenic 20.0%
!! TTAGATATATCATTTATGGA+AGG + Chr3:81634259-81634278 MsG0380016294.01.T01:intron 20.0%
!! TTATAGACAAAATAAAAGTG+AGG - Chr3:81634965-81634984 None:intergenic 20.0%
!! TTGTAAAATAAATTTGTCTG+TGG + Chr3:81636391-81636410 MsG0380016294.01.T01:intron 20.0%
!! TTTACGTATAATTTCTCAAA+AGG - Chr3:81635070-81635089 None:intergenic 20.0%
!!! CTTTTATCAGATATACTAAA+AGG + Chr3:81637478-81637497 MsG0380016294.01.T01:three_prime_UTR 20.0%
!!! TGAAGCTACAAATTTTATAT+AGG - Chr3:81633803-81633822 None:intergenic 20.0%
!!! TTCAAATTTAAAATTGGTCA+AGG - Chr3:81637025-81637044 None:intergenic 20.0%
! AAATGTATATATCTGACTTC+GGG + Chr3:81637325-81637344 MsG0380016294.01.T01:three_prime_UTR 25.0%
! AAGGTAAAATGGTAGATAAA+GGG - Chr3:81635636-81635655 None:intergenic 25.0%
! AATTTGTCGTTAATTTCATG+AGG - Chr3:81636502-81636521 None:intergenic 25.0%
! ACACCAAAAACTTGAATAAA+CGG - Chr3:81636034-81636053 None:intergenic 25.0%
! AGTAAAATTTAGACAGTAGA+AGG - Chr3:81634469-81634488 None:intergenic 25.0%
! ATATCATTTGCAACAAACTT+AGG + Chr3:81634984-81635003 MsG0380016294.01.T01:intron 25.0%
! ATATTGAAAGGATAGAGAAA+TGG + Chr3:81636538-81636557 MsG0380016294.01.T01:CDS 25.0%
! ATGGTATTTATAGTGTTATC+TGG + Chr3:81637583-81637602 MsG0380016294.01.T01:three_prime_UTR 25.0%
! CAAACGATGAAATAATTCAA+TGG - Chr3:81634659-81634678 None:intergenic 25.0%
! TAAAGAGTTGTCTATACATT+TGG + Chr3:81634203-81634222 MsG0380016294.01.T01:intron 25.0%
! TACATTTCCTTGAAAAAACT+AGG - Chr3:81634093-81634112 None:intergenic 25.0%
! TACATTTGGTTATGTATTCA+TGG + Chr3:81634217-81634236 MsG0380016294.01.T01:intron 25.0%
! TATTGAAAGGATAGAGAAAT+GGG + Chr3:81636539-81636558 MsG0380016294.01.T01:CDS 25.0%
! TCCAGAAAAATCAAATCATT+GGG + Chr3:81635811-81635830 MsG0380016294.01.T01:CDS 25.0%
! TGTGATTAGTATGAAGAATA+TGG + Chr3:81633306-81633325 MsG0380016294.01.T01:intron 25.0%
! TTATCAGATATACTAAAAGG+TGG + Chr3:81637481-81637500 MsG0380016294.01.T01:three_prime_UTR 25.0%
! TTGTAACTTTACTTCTTTCT+TGG + Chr3:81636209-81636228 MsG0380016294.01.T01:intron 25.0%
! TTTACAAGAGTAACCATAAT+CGG - Chr3:81634425-81634444 None:intergenic 25.0%
!! AATTTATATCTTTTCCTCCA+GGG + Chr3:81634349-81634368 MsG0380016294.01.T01:intron 25.0%
!! AGGCATTAATCTTTTACATT+CGG + Chr3:81634154-81634173 MsG0380016294.01.T01:intron 25.0%
!! GCTTTAAATTGCACAATAAA+TGG - Chr3:81633540-81633559 None:intergenic 25.0%
!! TTCTATTTTCGCTATATATC+AGG + Chr3:81635699-81635718 MsG0380016294.01.T01:intron 25.0%
!!! ATTATTTTGCAGGATCAATA+TGG + Chr3:81634286-81634305 MsG0380016294.01.T01:intron 25.0%
!!! CATCCTTTTTAACTTTTTCT+TGG + Chr3:81635227-81635246 MsG0380016294.01.T01:intron 25.0%
!!! TTTTGAGAAGTTATTTCCAA+AGG + Chr3:81636947-81636966 MsG0380016294.01.T01:CDS 25.0%
AAAGAGGTAGCAAATTATCT+TGG + Chr3:81635564-81635583 MsG0380016294.01.T01:CDS 30.0%
AAATCTCATCAATTTCGAAC+TGG + Chr3:81633177-81633196 MsG0380016294.01.T01:CDS 30.0%
AAATTCCAATCATGAGCTTA+TGG - Chr3:81635096-81635115 None:intergenic 30.0%
AAGACTATACAATTCACCTT+TGG - Chr3:81636966-81636985 None:intergenic 30.0%
AATAAATGGTTCAATTCGAG+CGG - Chr3:81633526-81633545 None:intergenic 30.0%
AATAATTCAATGGATGAGAC+AGG - Chr3:81634649-81634668 None:intergenic 30.0%
AATCATCTGACAATCACAAT+TGG - Chr3:81633665-81633684 None:intergenic 30.0%
AATTCCAATCATGAGCTTAT+GGG - Chr3:81635095-81635114 None:intergenic 30.0%
AGATAAAGCCTGATATTGAA+AGG + Chr3:81636526-81636545 MsG0380016294.01.T01:intron 30.0%
AGTAGAAGGAGAAAAACAAA+TGG - Chr3:81634455-81634474 None:intergenic 30.0%
AGTATCAGCCAAATATCTAT+TGG - Chr3:81635359-81635378 None:intergenic 30.0%
AGTTGATTGATACAAACCTT+TGG - Chr3:81636606-81636625 None:intergenic 30.0%
ATAAAACTACTGAAGAGAGT+TGG + Chr3:81637370-81637389 MsG0380016294.01.T01:three_prime_UTR 30.0%
ATAAGCTCATGATTGGAATT+TGG + Chr3:81635095-81635114 MsG0380016294.01.T01:intron 30.0%
ATACAAACCTTTGGCAAATA+TGG - Chr3:81636597-81636616 None:intergenic 30.0%
ATCATCTGACAATCACAATT+GGG - Chr3:81633664-81633683 None:intergenic 30.0%
ATGAACCATTTCATTTCAAC+AGG + Chr3:81637093-81637112 MsG0380016294.01.T01:intron 30.0%
CAAGGTAAAATGGTAGATAA+AGG - Chr3:81635637-81635656 None:intergenic 30.0%
CACAAAATGTTGTCAAATAG+CGG + Chr3:81634793-81634812 MsG0380016294.01.T01:intron 30.0%
CACCAAAAACTTGAATAAAC+GGG - Chr3:81636033-81636052 None:intergenic 30.0%
CAGCAGGCTAATAATATTTA+TGG + Chr3:81637451-81637470 MsG0380016294.01.T01:three_prime_UTR 30.0%
CATATATATTCCAGCAAACA+GGG + Chr3:81634372-81634391 MsG0380016294.01.T01:intron 30.0%
CTTAGTATCAACTACATCAA+AGG - Chr3:81635192-81635211 None:intergenic 30.0%
GAAGGTTCAGATGAAATATT+TGG + Chr3:81635856-81635875 MsG0380016294.01.T01:CDS 30.0%
GATAGAAGATAAGATACGTA+CGG - Chr3:81633013-81633032 None:intergenic 30.0%
GTCCAGAAAAATCAAATCAT+TGG + Chr3:81635810-81635829 MsG0380016294.01.T01:CDS 30.0%
TAAAACTACTGAAGAGAGTT+GGG + Chr3:81637371-81637390 MsG0380016294.01.T01:three_prime_UTR 30.0%
TATATACTTGATAAATGGCC+AGG + Chr3:81636839-81636858 MsG0380016294.01.T01:intron 30.0%
TGAACCATTTCATTTCAACA+GGG + Chr3:81637094-81637113 MsG0380016294.01.T01:intron 30.0%
TGTAAGTGTGTATCTTATCT+TGG - Chr3:81634492-81634511 None:intergenic 30.0%
TGTTTATACAGATATGTAGC+AGG - Chr3:81634018-81634037 None:intergenic 30.0%
TTCTATGGCATTAGGTTAAT+GGG + Chr3:81633118-81633137 MsG0380016294.01.T01:intron 30.0%
TTCTCTATCCTTTCAATATC+AGG - Chr3:81636537-81636556 None:intergenic 30.0%
TTTCTGGACATAAGAAACAT+TGG - Chr3:81635799-81635818 None:intergenic 30.0%
! ATTTTCGCTATATATCAGGA+AGG + Chr3:81635703-81635722 MsG0380016294.01.T01:intron 30.0%
! ATTTTCTGTTCTATGGCATT+AGG + Chr3:81633110-81633129 MsG0380016294.01.T01:intron 30.0%
! CAATTTATATCTTTTCCTCC+AGG + Chr3:81634348-81634367 MsG0380016294.01.T01:intron 30.0%
! TCTTGTAAGTGTTTTCTAGA+AGG + Chr3:81633224-81633243 MsG0380016294.01.T01:intron 30.0%
! TTGTCACATTTTCTGTTCTA+TGG + Chr3:81633103-81633122 MsG0380016294.01.T01:intron 30.0%
!! AATTTGCAGTGATTTGTTGA+CGG + Chr3:81633728-81633747 MsG0380016294.01.T01:intron 30.0%
!! AGTTCTAAAACCTTAAAGCA+TGG - Chr3:81637428-81637447 None:intergenic 30.0%
!! TACCCGTTTATTCAAGTTTT+TGG + Chr3:81636028-81636047 MsG0380016294.01.T01:intron 30.0%
!! TCCCAATGATTTGATTTTTC+TGG - Chr3:81635815-81635834 None:intergenic 30.0%
!! TTTTTCAGCACATATTGTAC+AGG + Chr3:81636684-81636703 MsG0380016294.01.T01:intron 30.0%
!!! AACATGTCCTAGTTTTTTCA+AGG + Chr3:81634083-81634102 MsG0380016294.01.T01:intron 30.0%
!!! ATAATTTGCTACCTCTTTTG+CGG - Chr3:81635562-81635581 None:intergenic 30.0%
!!! ATCAGATTTGGTTTTGTTGT+TGG + Chr3:81632762-81632781 MsG0380016294.01.T01:five_prime_UTR 30.0%
!!! ATTATTTTTACCCTGTTTGC+TGG - Chr3:81634385-81634404 None:intergenic 30.0%
!!! CATTTTAAAACAATCCAGCA+TGG - Chr3:81637310-81637329 None:intergenic 30.0%
!!! CTCGTTATTTTTTCCGATTA+TGG + Chr3:81634409-81634428 MsG0380016294.01.T01:intron 30.0%
!!! GTTTCTGTCTCAATTTTTTG+TGG - Chr3:81633155-81633174 None:intergenic 30.0%
AAAACTACTGAAGAGAGTTG+GGG + Chr3:81637372-81637391 MsG0380016294.01.T01:three_prime_UTR 35.0%
AAAATAAAAGAGCCCGACAA+TGG + Chr3:81637271-81637290 MsG0380016294.01.T01:CDS 35.0%
AATTCCCATAAGCTCATGAT+TGG + Chr3:81635088-81635107 MsG0380016294.01.T01:intron 35.0%
ACATTTCCAAAATGCATCTC+TGG - Chr3:81633568-81633587 None:intergenic 35.0%
AGAATTTATCAACACTGCCA+TGG + Chr3:81636160-81636179 MsG0380016294.01.T01:CDS 35.0%
AGGTTACCTGTATTTCCATA+AGG + Chr3:81635879-81635898 MsG0380016294.01.T01:CDS 35.0%
ATAAAAATCTCGTCTGCTCA+AGG - Chr3:81635655-81635674 None:intergenic 35.0%
ATCCATGTGCTATGCAATTA+AGG - Chr3:81633923-81633942 None:intergenic 35.0%
CAAAGACAGCAAAGTTTAAC+AGG - Chr3:81634518-81634537 None:intergenic 35.0%
CAAATCATTGGGAGTGAAAA+TGG + Chr3:81635822-81635841 MsG0380016294.01.T01:CDS 35.0%
CAATAAATCAACTTCGGCTT+GGG + Chr3:81636106-81636125 MsG0380016294.01.T01:CDS 35.0%
CAATGTTCAATCAACAATGC+AGG - Chr3:81636294-81636313 None:intergenic 35.0%
CAGTTACATACTTTCTGCAT+TGG + Chr3:81635403-81635422 MsG0380016294.01.T01:CDS 35.0%
CTATAGGCTGTCTTATGATT+GGG + Chr3:81636265-81636284 MsG0380016294.01.T01:intron 35.0%
GAGAGCCAATAAATCAACTT+CGG + Chr3:81636100-81636119 MsG0380016294.01.T01:CDS 35.0%
GAGTGTTATGTCATAACTAG+AGG + Chr3:81635006-81635025 MsG0380016294.01.T01:intron 35.0%
GCATATATATTCCAGCAAAC+AGG + Chr3:81634371-81634390 MsG0380016294.01.T01:intron 35.0%
GCTGATTACTATGTTCTAGT+TGG + Chr3:81635119-81635138 MsG0380016294.01.T01:intron 35.0%
GGTTCAGATGAAATATTTGG+AGG + Chr3:81635859-81635878 MsG0380016294.01.T01:CDS 35.0%
GTCTTGTCATAGTTGTAAAG+AGG - Chr3:81632979-81632998 None:intergenic 35.0%
GTTATACTGTGATATCATGC+AGG + Chr3:81635249-81635268 MsG0380016294.01.T01:intron 35.0%
GTTATTCAGTTCAATGTCAC+AGG - Chr3:81636793-81636812 None:intergenic 35.0%
GTTCTATGGCATTAGGTTAA+TGG + Chr3:81633117-81633136 MsG0380016294.01.T01:intron 35.0%
TCCATGTGCTATGCAATTAA+GGG - Chr3:81633922-81633941 None:intergenic 35.0%
TCTATGGCATTAGGTTAATG+GGG + Chr3:81633119-81633138 MsG0380016294.01.T01:intron 35.0%
TCTCAAAAATTGTCCTGTAG+TGG - Chr3:81636935-81636954 None:intergenic 35.0%
TGAGAATCCATATTTGCCAA+AGG + Chr3:81636587-81636606 MsG0380016294.01.T01:CDS 35.0%
TGGTCAAGGTTATGATGAAA+AGG - Chr3:81637011-81637030 None:intergenic 35.0%
! AATAAATCAACTTCGGCTTG+GGG + Chr3:81636107-81636126 MsG0380016294.01.T01:CDS 35.0%
! ACTGTCAAAAGTACACAGTT+GGG - Chr3:81632731-81632750 None:intergenic 35.0%
! ACTTAATTTTCCCCCATTCA+GGG + Chr3:81635519-81635538 MsG0380016294.01.T01:intron 35.0%
! AGGCATTAAGTTGCATTTCA+TGG - Chr3:81635050-81635069 None:intergenic 35.0%
! ATAAACGGGTAAAAGTACAC+AGG - Chr3:81636019-81636038 None:intergenic 35.0%
! GATTTTTATTGCTAGCTCGA+AGG + Chr3:81635666-81635685 MsG0380016294.01.T01:intron 35.0%
! TACAATACCATTTTCCACTC+CGG - Chr3:81636194-81636213 None:intergenic 35.0%
! TACTGTCAAAAGTACACAGT+TGG - Chr3:81632732-81632751 None:intergenic 35.0%
! TACTTTCTGCATTGGTATAG+AGG + Chr3:81635411-81635430 MsG0380016294.01.T01:CDS 35.0%
! TTAAACTTTGCTGTCTTTGC+AGG + Chr3:81634519-81634538 MsG0380016294.01.T01:intron 35.0%
! TTCCTCTACATTAGAAGCAT+CGG - Chr3:81634065-81634084 None:intergenic 35.0%
!! AAGTTGATTTATTGGCTCTC+AGG - Chr3:81636100-81636119 None:intergenic 35.0%
!! ACAGCTCATTTTAACCATGA+GGG - Chr3:81635448-81635467 None:intergenic 35.0%
!! AGAAGAGTTTGTTGATATGC+TGG + Chr3:81633329-81633348 MsG0380016294.01.T01:CDS 35.0%
!! AGTTTGTTGATATGCTGGAT+GGG + Chr3:81633334-81633353 MsG0380016294.01.T01:CDS 35.0%
!! GAGGATGCTTTAAAATTCCA+GGG - Chr3:81634946-81634965 None:intergenic 35.0%
!! GTTTTCAGGGTAAACAAAGT+TGG - Chr3:81636889-81636908 None:intergenic 35.0%
!! TACAGCTCATTTTAACCATG+AGG - Chr3:81635449-81635468 None:intergenic 35.0%
!! TGAGGATGCTTTAAAATTCC+AGG - Chr3:81634947-81634966 None:intergenic 35.0%
AAACACTCCTACCACAAAAG+AGG + Chr3:81636905-81636924 MsG0380016294.01.T01:CDS 40.0%
AACACTCCTACCACAAAAGA+GGG + Chr3:81636906-81636925 MsG0380016294.01.T01:CDS 40.0%
AATCCAGCATGGTCTTTAGA+GGG - Chr3:81637299-81637318 None:intergenic 40.0%
ACCCTTAATTGCATAGCACA+TGG + Chr3:81633918-81633937 MsG0380016294.01.T01:intron 40.0%
AGAACCAGTGCTGTCAATTA+TGG - Chr3:81634880-81634899 None:intergenic 40.0%
AGCACCCTGTTGAAATGAAA+TGG - Chr3:81637101-81637120 None:intergenic 40.0%
ATAACAACACCAAGCAGAAC+TGG - Chr3:81634695-81634714 None:intergenic 40.0%
ATCAACACGCTATGATCCAA+CGG + Chr3:81634590-81634609 MsG0380016294.01.T01:CDS 40.0%
ATGATGACTGATGTACCCTT+TGG + Chr3:81635286-81635305 MsG0380016294.01.T01:CDS 40.0%
ATGGTTCATGCATAGTCAAG+TGG - Chr3:81637082-81637101 None:intergenic 40.0%
CATTCCATAATTGACAGCAC+TGG + Chr3:81634873-81634892 MsG0380016294.01.T01:intron 40.0%
CCAAGTACAACCATGCTTTA+AGG + Chr3:81637415-81637434 MsG0380016294.01.T01:three_prime_UTR 40.0%
CCAATAAATCAACTTCGGCT+TGG + Chr3:81636105-81636124 MsG0380016294.01.T01:CDS 40.0%
CCTTAAAGCATGGTTGTACT+TGG - Chr3:81637418-81637437 None:intergenic 40.0%
CGAACTTCATTTCACAGTTC+AGG + Chr3:81635599-81635618 MsG0380016294.01.T01:CDS 40.0%
GAACTGTGAAATGAAGTTCG+TGG - Chr3:81635599-81635618 None:intergenic 40.0%
GATACGTACGGTGACAATAA+CGG - Chr3:81633001-81633020 None:intergenic 40.0%
GATCATGCTAACGAACAAGT+AGG + Chr3:81636761-81636780 MsG0380016294.01.T01:intron 40.0%
GCTATAGGCTGTCTTATGAT+TGG + Chr3:81636264-81636283 MsG0380016294.01.T01:intron 40.0%
GGGGATAAGCACAAGAATTA+TGG - Chr3:81635954-81635973 None:intergenic 40.0%
GTGCTGTCAATTATGGAATG+CGG - Chr3:81634873-81634892 None:intergenic 40.0%
TAATGCCTGTGTATGCTAGA+GGG - Chr3:81634142-81634161 None:intergenic 40.0%
TACTGCAAAAGCTGTGGAAT+GGG + Chr3:81637162-81637181 MsG0380016294.01.T01:CDS 40.0%
TCATGCATAGTCAAGTGGTT+TGG - Chr3:81637077-81637096 None:intergenic 40.0%
TCTTTGCAGGAGGATTAAGA+AGG + Chr3:81634532-81634551 MsG0380016294.01.T01:intron 40.0%
TGATGAAGCTCTTCCTTGTT+AGG - Chr3:81635907-81635926 None:intergenic 40.0%
TGCAGTGGCCAATAGATATT+TGG + Chr3:81635348-81635367 MsG0380016294.01.T01:CDS 40.0%
TGCTTGTTCGTATGTCTTGA+AGG + Chr3:81636635-81636654 MsG0380016294.01.T01:intron 40.0%
TGGCATTACCCCTCTTTATT+TGG + Chr3:81633419-81633438 MsG0380016294.01.T01:CDS 40.0%
TTAATGCCTGTGTATGCTAG+AGG - Chr3:81634143-81634162 None:intergenic 40.0%
TTAGAATGTCCAGTTCTGCT+TGG + Chr3:81634683-81634702 MsG0380016294.01.T01:intron 40.0%
TTGCTGGAATATATATGCCC+TGG - Chr3:81634369-81634388 None:intergenic 40.0%
! AAAATGGTTCTGTCTGGAGA+AGG + Chr3:81635838-81635857 MsG0380016294.01.T01:CDS 40.0%
! AGACTATTTTCAACTCTCCC+TGG + Chr3:81634926-81634945 MsG0380016294.01.T01:intron 40.0%
! CAGTTGGATTGATGGTTTGA+AGG + Chr3:81636739-81636758 MsG0380016294.01.T01:CDS 40.0%
! CCAAGCCGAAGTTGATTTAT+TGG - Chr3:81636108-81636127 None:intergenic 40.0%
! CCAATTCCAGAGATGCATTT+TGG + Chr3:81633559-81633578 MsG0380016294.01.T01:intron 40.0%
! GACTTAATTTTCCCCCATTC+AGG + Chr3:81635518-81635537 MsG0380016294.01.T01:intron 40.0%
! GGCATTACCCCTCTTTATTT+GGG + Chr3:81633420-81633439 MsG0380016294.01.T01:CDS 40.0%
! TACCCCTCTTTATTTGGGTT+GGG + Chr3:81633425-81633444 MsG0380016294.01.T01:CDS 40.0%
! TCTTTAGAGGGATCCATTGT+CGG - Chr3:81637287-81637306 None:intergenic 40.0%
! TTACCCCTCTTTATTTGGGT+TGG + Chr3:81633424-81633443 MsG0380016294.01.T01:CDS 40.0%
! TTCGGCAGTTGCATGATTTT+AGG + Chr3:81634172-81634191 MsG0380016294.01.T01:intron 40.0%
! TTGGACTGATGGGCAAATTT+AGG - Chr3:81637522-81637541 None:intergenic 40.0%
!! CCAAAATGCATCTCTGGAAT+TGG - Chr3:81633562-81633581 None:intergenic 40.0%
!! GAGTTTGTTGATATGCTGGA+TGG + Chr3:81633333-81633352 MsG0380016294.01.T01:CDS 40.0%
!! TCATCAACGTCTTGCTATTG+TGG + Chr3:81632933-81632952 MsG0380016294.01.T01:CDS 40.0%
!! TGCTTGGTGTTGTTATGTAG+TGG + Chr3:81634699-81634718 MsG0380016294.01.T01:intron 40.0%
!!! TTGTGGTAGGAGTGTTTTCA+GGG - Chr3:81636902-81636921 None:intergenic 40.0%
!!! TTTGTGGTAGGAGTGTTTTC+AGG - Chr3:81636903-81636922 None:intergenic 40.0%
AATGCCTGTGTATGCTAGAG+GGG - Chr3:81634141-81634160 None:intergenic 45.0%
ACAAAGCGCATTGGACTGAT+GGG - Chr3:81637532-81637551 None:intergenic 45.0%
AGCATAAGAGGCTGAGCTAT+AGG + Chr3:81636249-81636268 MsG0380016294.01.T01:intron 45.0%
ATCTCGTCATGCAGCATAAG+AGG + Chr3:81636237-81636256 MsG0380016294.01.T01:intron 45.0%
ATGCAGTACTGCAAAAGCTG+TGG + Chr3:81637156-81637175 MsG0380016294.01.T01:CDS 45.0%
ATTGCTGCTCGTGATGCTAT+TGG + Chr3:81633399-81633418 MsG0380016294.01.T01:CDS 45.0%
CAAAAGAGGGATACCACTAC+AGG + Chr3:81636919-81636938 MsG0380016294.01.T01:CDS 45.0%
CAATCCAGCATGGTCTTTAG+AGG - Chr3:81637300-81637319 None:intergenic 45.0%
CAATGCAAACCACTCCAATC+AGG - Chr3:81632892-81632911 None:intergenic 45.0%
CGAATTCCGCTACAAAACAG+TGG - Chr3:81634834-81634853 None:intergenic 45.0%
CTCGTCTGCTCAAGGTAAAA+TGG - Chr3:81635647-81635666 None:intergenic 45.0%
CTGGAATATATATGCCCTGG+AGG - Chr3:81634366-81634385 None:intergenic 45.0%
CTGTGAAATGAAGTTCGTGG+TGG - Chr3:81635596-81635615 None:intergenic 45.0%
GCACATATTGTACAGGCAGA+AGG + Chr3:81636691-81636710 MsG0380016294.01.T01:intron 45.0%
GGAATAGCTAACCCTCTCAA+AGG - Chr3:81634628-81634647 None:intergenic 45.0%
GTACTGCAAAAGCTGTGGAA+TGG + Chr3:81637161-81637180 MsG0380016294.01.T01:CDS 45.0%
GTCGGATACAGTTGGATTGA+TGG + Chr3:81636731-81636750 MsG0380016294.01.T01:CDS 45.0%
GTTGGATCATAGCGTGTTGA+TGG - Chr3:81634591-81634610 None:intergenic 45.0%
TACAATGGCACAAAGCGCAT+TGG - Chr3:81637541-81637560 None:intergenic 45.0%
TAGGCGCCTTATGGAAATAC+AGG - Chr3:81635888-81635907 None:intergenic 45.0%
TATCGATCCGGAGTGGAAAA+TGG + Chr3:81636184-81636203 MsG0380016294.01.T01:CDS 45.0%
TCCAAAAATCTGGACCCTTC+AGG + Chr3:81637196-81637215 MsG0380016294.01.T01:CDS 45.0%
TGCAGCATGGTCCAAAAATC+TGG + Chr3:81637186-81637205 MsG0380016294.01.T01:CDS 45.0%
TGCCGATGCTTCTAATGTAG+AGG + Chr3:81634060-81634079 MsG0380016294.01.T01:intron 45.0%
TGCGGAATCTTAGCAGTGTT+GGG + Chr3:81632796-81632815 MsG0380016294.01.T01:CDS 45.0%
TGCTAAGATTCCGCACATGA+CGG - Chr3:81632791-81632810 None:intergenic 45.0%
TGTTCATGCAGCTGCATACA+AGG + Chr3:81637234-81637253 MsG0380016294.01.T01:CDS 45.0%
TTGCAGGAGGATTAAGAAGG+TGG + Chr3:81634535-81634554 MsG0380016294.01.T01:intron 45.0%
! AACTTTGCTGTCTTTGCAGG+AGG + Chr3:81634522-81634541 MsG0380016294.01.T01:intron 45.0%
! AATCTTAGCAGTGTTGGGTG+TGG + Chr3:81632801-81632820 MsG0380016294.01.T01:CDS 45.0%
! ACCTGAAGGGTCCAGATTTT+TGG - Chr3:81637200-81637219 None:intergenic 45.0%
! AGAGGTTGATCTCCAGAAGT+AGG - Chr3:81632961-81632980 None:intergenic 45.0%
! CTTTAGAGGGATCCATTGTC+GGG - Chr3:81637286-81637305 None:intergenic 45.0%
! GAGGTTGATCTCCAGAAGTA+GGG - Chr3:81632960-81632979 None:intergenic 45.0%
! GCTATGCCACTGTTTTGTAG+CGG + Chr3:81634825-81634844 MsG0380016294.01.T01:intron 45.0%
! GGAAGGTATAGATGCACTTG+AGG + Chr3:81635720-81635739 MsG0380016294.01.T01:intron 45.0%
! GGAGTGAAAATGGTTCTGTC+TGG + Chr3:81635832-81635851 MsG0380016294.01.T01:CDS 45.0%
! GTAGTGGTATCCCTCTTTTG+TGG - Chr3:81636919-81636938 None:intergenic 45.0%
! TCTGCATTGGTATAGAGGTC+TGG + Chr3:81635416-81635435 MsG0380016294.01.T01:intron 45.0%
! TCTTTTGCGGCTCTCAAATC+CGG - Chr3:81635549-81635568 None:intergenic 45.0%
! TGGTATCCCTCTTTTGTGGT+AGG - Chr3:81636915-81636934 None:intergenic 45.0%
! TTTCCATAAGGCGCCTAACA+AGG + Chr3:81635891-81635910 MsG0380016294.01.T01:CDS 45.0%
!! ACCCCTCTTTATTTGGGTTG+GGG + Chr3:81633426-81633445 MsG0380016294.01.T01:CDS 45.0%
!! ATTTGCTCTGAGAACCATGG+TGG - Chr3:81634567-81634586 None:intergenic 45.0%
!! CGTTTTAACCTCAACCTCGT+TGG + Chr3:81633492-81633511 MsG0380016294.01.T01:intron 45.0%
!! GGAAGGGCTGATTATTTTGC+AGG + Chr3:81634276-81634295 MsG0380016294.01.T01:intron 45.0%
!! GGAATTTGCTCTGAGAACCA+TGG - Chr3:81634570-81634589 None:intergenic 45.0%
!!! AGGTTTTAGAACTTCGCAGC+AGG + Chr3:81637435-81637454 MsG0380016294.01.T01:three_prime_UTR 45.0%
!! ATAATAATTACATAAAAATA+TGG - Chr3:81635975-81635994 None:intergenic 5.0%
!! CAATTTATTAAAAAAAAAAA+GGG - Chr3:81633889-81633908 None:intergenic 5.0%
!! TAATAATTACATAAAAATAT+GGG - Chr3:81635974-81635993 None:intergenic 5.0%
!! TCAATTTATTAAAAAAAAAA+AGG - Chr3:81633890-81633909 None:intergenic 5.0%
AAATCCGGAGAGCCCTGAAT+GGG - Chr3:81635534-81635553 None:intergenic 50.0%
AGGTCTGGACTATTCCCTCA+TGG + Chr3:81635431-81635450 MsG0380016294.01.T01:intron 50.0%
ATGCCTGTGTATGCTAGAGG+GGG - Chr3:81634140-81634159 None:intergenic 50.0%
CACAAAGCGCATTGGACTGA+TGG - Chr3:81637533-81637552 None:intergenic 50.0%
CACTGCCATGGATATCGATC+CGG + Chr3:81636172-81636191 MsG0380016294.01.T01:CDS 50.0%
CAGAAGGAACAGTTCAGCGA+TGG + Chr3:81636707-81636726 MsG0380016294.01.T01:CDS 50.0%
CAGTACTGCATGCCACACTA+GGG - Chr3:81637147-81637166 None:intergenic 50.0%
CATAGAGGACCTGATTGGAG+TGG + Chr3:81632880-81632899 MsG0380016294.01.T01:CDS 50.0%
CCGGACAACAGAACACCAAA+GGG - Chr3:81635304-81635323 None:intergenic 50.0%
CTGTGATATCATGCAGGCTG+TGG + Chr3:81635255-81635274 MsG0380016294.01.T01:intron 50.0%
CTTAGACACCAACGAGGTTG+AGG - Chr3:81633503-81633522 None:intergenic 50.0%
CTTCCTTGTTAGGCGCCTTA+TGG - Chr3:81635897-81635916 None:intergenic 50.0%
GAACAGTTCAGCGATGGTGT+CGG + Chr3:81636713-81636732 MsG0380016294.01.T01:CDS 50.0%
GAAGGTGGTACAATCCACCA+TGG + Chr3:81634550-81634569 MsG0380016294.01.T01:CDS 50.0%
GCATCATCGAATTGTCTCGC+AGG + Chr3:81632851-81632870 MsG0380016294.01.T01:CDS 50.0%
GCCCCAACCCAAATAAAGAG+GGG - Chr3:81633430-81633449 None:intergenic 50.0%
GCTATTGTGGACCCTACTTC+TGG + Chr3:81632946-81632965 MsG0380016294.01.T01:CDS 50.0%
GGATTTGAGAGCCGCAAAAG+AGG + Chr3:81635548-81635567 MsG0380016294.01.T01:CDS 50.0%
GGCCCCAACCCAAATAAAGA+GGG - Chr3:81633431-81633450 None:intergenic 50.0%
GTAACTGTGATCCCCACTGA+CGG - Chr3:81635390-81635409 None:intergenic 50.0%
GTGCGGAATCTTAGCAGTGT+TGG + Chr3:81632795-81632814 MsG0380016294.01.T01:CDS 50.0%
TAACTGTGATCCCCACTGAC+GGG - Chr3:81635389-81635408 None:intergenic 50.0%
TCCGGACAACAGAACACCAA+AGG - Chr3:81635305-81635324 None:intergenic 50.0%
TGCGACATAGAGGACCTGAT+TGG + Chr3:81632875-81632894 MsG0380016294.01.T01:CDS 50.0%
TGGCCCCAACCCAAATAAAG+AGG - Chr3:81633432-81633451 None:intergenic 50.0%
! GATCCCTCTAAAGACCATGC+TGG + Chr3:81637293-81637312 MsG0380016294.01.T01:exon 50.0%
! TAGCAAGACGTTGATGAGCG+AGG - Chr3:81632930-81632949 None:intergenic 50.0%
! TGATCCAACGGTTTTGCGTG+AGG + Chr3:81634602-81634621 MsG0380016294.01.T01:CDS 50.0%
! TGCGTCTGAAATGAAAGCGC+TGG + Chr3:81634311-81634330 MsG0380016294.01.T01:intron 50.0%
! TTTGCGTGAGGCCTTTGAGA+GGG + Chr3:81634614-81634633 MsG0380016294.01.T01:CDS 50.0%
! TTTTGCGTGAGGCCTTTGAG+AGG + Chr3:81634613-81634632 MsG0380016294.01.T01:CDS 50.0%
!! AACTTCGGCTTGGGGTATAG+AGG + Chr3:81636115-81636134 MsG0380016294.01.T01:CDS 50.0%
!! CCCTTTGGTGTTCTGTTGTC+CGG + Chr3:81635301-81635320 MsG0380016294.01.T01:CDS 50.0%
!! TATTTGGGTTGGGGCCATGA+TGG + Chr3:81633435-81633454 MsG0380016294.01.T01:CDS 50.0%
!! TTTGGTGTTCTGTTGTCCGG+AGG + Chr3:81635304-81635323 MsG0380016294.01.T01:CDS 50.0%
AAGGCCTCACGCAAAACCGT+TGG - Chr3:81634609-81634628 None:intergenic 55.0%
AAGTGACGAGTCCAGTCCTC+CGG - Chr3:81635323-81635342 None:intergenic 55.0%
AATCCGGAGAGCCCTGAATG+GGG - Chr3:81635533-81635552 None:intergenic 55.0%
AGCTGCATGAACACCAAGCG+CGG - Chr3:81637227-81637246 None:intergenic 55.0%
ATACTGACACTGCCCGTCAG+TGG + Chr3:81635374-81635393 MsG0380016294.01.T01:CDS 55.0%
CAAATCCGGAGAGCCCTGAA+TGG - Chr3:81635535-81635554 None:intergenic 55.0%
CCACTCCGGATCGATATCCA+TGG - Chr3:81636180-81636199 None:intergenic 55.0%
CCATGGATATCGATCCGGAG+TGG + Chr3:81636177-81636196 MsG0380016294.01.T01:CDS 55.0%
CTGTGGAATGGGATGCAGCA+TGG + Chr3:81637173-81637192 MsG0380016294.01.T01:CDS 55.0%
GCAGTACTGCATGCCACACT+AGG - Chr3:81637148-81637167 None:intergenic 55.0%
GTTGGGGCCATGATGGTATG+TGG + Chr3:81633442-81633461 MsG0380016294.01.T01:intron 55.0%
TACTGACACTGCCCGTCAGT+GGG + Chr3:81635375-81635394 MsG0380016294.01.T01:CDS 55.0%
TCAGCATTGCGTCTGTGACC+TGG - Chr3:81636860-81636879 None:intergenic 55.0%
TCTCGCAGGTTGCGACATAG+AGG + Chr3:81632865-81632884 MsG0380016294.01.T01:CDS 55.0%
TGCCTGTGTATGCTAGAGGG+GGG - Chr3:81634139-81634158 None:intergenic 55.0%
TGTTCTGTTGTCCGGAGGAC+TGG + Chr3:81635309-81635328 MsG0380016294.01.T01:CDS 55.0%
TTCGATGATGCGAGCGCGTT+TGG - Chr3:81632842-81632861 None:intergenic 55.0%
TTGTTGGCAGCCGTCATGTG+CGG + Chr3:81632778-81632797 MsG0380016294.01.T01:exon 55.0%
! AGAGGCACGTGTACCGTTCT+TGG + Chr3:81636133-81636152 MsG0380016294.01.T01:CDS 55.0%
! CTCGTCACTTGTTGCTGCAG+TGG + Chr3:81635333-81635352 MsG0380016294.01.T01:CDS 55.0%
! GCGATGGTGTCGGATACAGT+TGG + Chr3:81636723-81636742 MsG0380016294.01.T01:CDS 55.0%
!! CATTTCAACAGGGTGCTGCC+AGG + Chr3:81637104-81637123 MsG0380016294.01.T01:intron 55.0%
ACTGACACTGCCCGTCAGTG+GGG + Chr3:81635376-81635395 MsG0380016294.01.T01:CDS 60.0%
AGTTCCAGGAGGCCCTAGTG+TGG + Chr3:81637132-81637151 MsG0380016294.01.T01:CDS 60.0%
ATCCGGAGAGCCCTGAATGG+GGG - Chr3:81635532-81635551 None:intergenic 60.0%
CCTGTGTATGCTAGAGGGGG+GGG - Chr3:81634137-81634156 None:intergenic 60.0%
GAGCGGCTTAGACACCAACG+AGG - Chr3:81633509-81633528 None:intergenic 60.0%
GCCAGGTCAACAGTTCCAGG+AGG + Chr3:81637121-81637140 MsG0380016294.01.T01:CDS 60.0%
GCCTCCTGGAACTGTTGACC+TGG - Chr3:81637125-81637144 None:intergenic 60.0%
GCCTGTGTATGCTAGAGGGG+GGG - Chr3:81634138-81634157 None:intergenic 60.0%
GCGGCAGCCACATACCATCA+TGG - Chr3:81633452-81633471 None:intergenic 60.0%
GCTGCCAGGTCAACAGTTCC+AGG + Chr3:81637118-81637137 MsG0380016294.01.T01:CDS 60.0%
TTCCCCCATTCAGGGCTCTC+CGG + Chr3:81635527-81635546 MsG0380016294.01.T01:intron 60.0%
CAAGCGCGGCACGACCTGAA+GGG - Chr3:81637213-81637232 None:intergenic 65.0%
CATGCCACACTAGGGCCTCC+TGG - Chr3:81637139-81637158 None:intergenic 65.0%
CCCCCCCCTCTAGCATACAC+AGG + Chr3:81634134-81634153 MsG0380016294.01.T01:intron 65.0%
CCAAGCGCGGCACGACCTGA+AGG - Chr3:81637214-81637233 None:intergenic 70.0%
CCTTCAGGTCGTGCCGCGCT+TGG + Chr3:81637211-81637230 MsG0380016294.01.T01:CDS 70.0%
Chromosome Type Strat End Strand Name
Chr3 gene 81632680 81637605 81632680 ID=MsG0380016294.01;Name=MsG0380016294.01
Chr3 mRNA 81632680 81637605 81632680 ID=MsG0380016294.01.T01;Parent=MsG0380016294.01;Name=MsG0380016294.01.T01;_AED=0.30;_eAED=0.30;_QI=113|0.90|1|1|1|1|12|302|538
Chr3 exon 81632680 81633011 81632680 ID=MsG0380016294.01.T01:exon:33029;Parent=MsG0380016294.01.T01
Chr3 exon 81633132 81633227 81633132 ID=MsG0380016294.01.T01:exon:33030;Parent=MsG0380016294.01.T01
Chr3 exon 81633315 81633456 81633315 ID=MsG0380016294.01.T01:exon:33031;Parent=MsG0380016294.01.T01
Chr3 exon 81634541 81634635 81634541 ID=MsG0380016294.01.T01:exon:33032;Parent=MsG0380016294.01.T01
Chr3 exon 81635271 81635432 81635271 ID=MsG0380016294.01.T01:exon:33033;Parent=MsG0380016294.01.T01
Chr3 exon 81635540 81635620 81635540 ID=MsG0380016294.01.T01:exon:33034;Parent=MsG0380016294.01.T01
Chr3 exon 81635721 81635942 81635721 ID=MsG0380016294.01.T01:exon:33035;Parent=MsG0380016294.01.T01
Chr3 exon 81636071 81636205 81636071 ID=MsG0380016294.01.T01:exon:33036;Parent=MsG0380016294.01.T01
Chr3 exon 81636528 81636608 81636528 ID=MsG0380016294.01.T01:exon:33037;Parent=MsG0380016294.01.T01
Chr3 exon 81636692 81636778 81636692 ID=MsG0380016294.01.T01:exon:33038;Parent=MsG0380016294.01.T01
Chr3 exon 81636861 81636968 81636861 ID=MsG0380016294.01.T01:exon:33039;Parent=MsG0380016294.01.T01
Chr3 exon 81637115 81637605 81637115 ID=MsG0380016294.01.T01:exon:33040;Parent=MsG0380016294.01.T01
Chr3 five_prime_UTR 81632680 81632792 81632680 ID=MsG0380016294.01.T01:five_prime_utr;Parent=MsG0380016294.01.T01
Chr3 CDS 81632793 81633011 81632793 ID=MsG0380016294.01.T01:cds;Parent=MsG0380016294.01.T01
Chr3 CDS 81633132 81633227 81633132 ID=MsG0380016294.01.T01:cds;Parent=MsG0380016294.01.T01
Chr3 CDS 81633315 81633456 81633315 ID=MsG0380016294.01.T01:cds;Parent=MsG0380016294.01.T01
Chr3 CDS 81634541 81634635 81634541 ID=MsG0380016294.01.T01:cds;Parent=MsG0380016294.01.T01
Chr3 CDS 81635271 81635432 81635271 ID=MsG0380016294.01.T01:cds;Parent=MsG0380016294.01.T01
Chr3 CDS 81635540 81635620 81635540 ID=MsG0380016294.01.T01:cds;Parent=MsG0380016294.01.T01
Chr3 CDS 81635721 81635942 81635721 ID=MsG0380016294.01.T01:cds;Parent=MsG0380016294.01.T01
Chr3 CDS 81636071 81636205 81636071 ID=MsG0380016294.01.T01:cds;Parent=MsG0380016294.01.T01
Chr3 CDS 81636528 81636608 81636528 ID=MsG0380016294.01.T01:cds;Parent=MsG0380016294.01.T01
Chr3 CDS 81636692 81636778 81636692 ID=MsG0380016294.01.T01:cds;Parent=MsG0380016294.01.T01
Chr3 CDS 81636861 81636968 81636861 ID=MsG0380016294.01.T01:cds;Parent=MsG0380016294.01.T01
Chr3 CDS 81637115 81637303 81637115 ID=MsG0380016294.01.T01:cds;Parent=MsG0380016294.01.T01
Chr3 three_prime_UTR 81637304 81637605 81637304 ID=MsG0380016294.01.T01:three_prime_utr;Parent=MsG0380016294.01.T01
Gene Sequence

>MsG0380016294.01.T01

ATGTGCGGAATCTTAGCAGTGTTGGGTGTGGTCGACAATTCTCAGTCCAAACGCGCTCGCATCATCGAATTGTCTCGCAGGTTGCGACATAGAGGACCTGATTGGAGTGGTTTGCATTGTCATCAAGATTGTTACCTCGCTCATCAACGTCTTGCTATTGTGGACCCTACTTCTGGAGATCAACCTCTTTACAACTATGACAAGACCGTTATTGTCACCGTTAATGGGGAGATATACAACCACAAAAAATTGAGACAGAAACTGAAATCTCATCAATTTCGAACTGGTAGTGATTGTGAAGTCATTGCTCATCTTTATGAAGAATATGGAGAAGAGTTTGTTGATATGCTGGATGGGATGTTCTCATTTGTGCTTCTTGATACTAGAGATAAAAGTTTTATTGCTGCTCGTGATGCTATTGGCATTACCCCTCTTTATTTGGGTTGGGGCCATGATGGAGGATTAAGAAGGTGGTACAATCCACCATGGTTCTCAGAGCAAATTCCATCAACACGCTATGATCCAACGGTTTTGCGTGAGGCCTTTGAGAGGGCTGTGGTTAAGAGAATGATGACTGATGTACCCTTTGGTGTTCTGTTGTCCGGAGGACTGGACTCGTCACTTGTTGCTGCAGTGGCCAATAGATATTTGGCTGATACTGACACTGCCCGTCAGTGGGGATCACAGTTACATACTTTCTGCATTGGTATAGAGGGCTCTCCGGATTTGAGAGCCGCAAAAGAGGTAGCAAATTATCTTGGCACTTGCCACCACGAACTTCATTTCACAGTTCAGGAAGGTATAGATGCACTTGAGGAAGTCATTTACCATATTGAAACATATGATGTAACGACTGTCAGAGCAAGTACTCCAATGTTTCTTATGTCCAGAAAAATCAAATCATTGGGAGTGAAAATGGTTCTGTCTGGAGAAGGTTCAGATGAAATATTTGGAGGTTACCTGTATTTCCATAAGGCGCCTAACAAGGAAGAGCTTCATCAAGAAACATGCCGAAAAATTAAAGCACTTCATCTTTATGACTGCCTGAGAGCCAATAAATCAACTTCGGCTTGGGGTATAGAGGCACGTGTACCGTTCTTGGATAAAGAATTTATCAACACTGCCATGGATATCGATCCGGAGTGGAAAATGATAAAGCCTGATATTGAAAGGATAGAGAAATGGGTATTGCGCAATGCATTTGATGATGATGAGAATCCATATTTGCCAAAGCACATATTGTACAGGCAGAAGGAACAGTTCAGCGATGGTGTCGGATACAGTTGGATTGATGGTTTGAAGGATCATGCTAACGAACAAGTCACAGACGCAATGCTGAAGCATGCCAACTTTGTTTACCCTGAAAACACTCCTACCACAAAAGAGGGATACCACTACAGGACAATTTTTGAGAAGTTATTTCCAAAGGGTGCTGCCAGGTCAACAGTTCCAGGAGGCCCTAGTGTGGCATGCAGTACTGCAAAAGCTGTGGAATGGGATGCAGCATGGTCCAAAAATCTGGACCCTTCAGGTCGTGCCGCGCTTGGTGTTCATGCAGCTGCATACAAGGATGCAGTAGATATCAAAATAAAAGAGCCCGACAATGGATCCCTCTAA

Protein sequence

>MsG0380016294.01.T01

MCGILAVLGVVDNSQSKRARIIELSRRLRHRGPDWSGLHCHQDCYLAHQRLAIVDPTSGDQPLYNYDKTVIVTVNGEIYNHKKLRQKLKSHQFRTGSDCEVIAHLYEEYGEEFVDMLDGMFSFVLLDTRDKSFIAARDAIGITPLYLGWGHDGGLRRWYNPPWFSEQIPSTRYDPTVLREAFERAVVKRMMTDVPFGVLLSGGLDSSLVAAVANRYLADTDTARQWGSQLHTFCIGIEGSPDLRAAKEVANYLGTCHHELHFTVQEGIDALEEVIYHIETYDVTTVRASTPMFLMSRKIKSLGVKMVLSGEGSDEIFGGYLYFHKAPNKEELHQETCRKIKALHLYDCLRANKSTSAWGIEARVPFLDKEFINTAMDIDPEWKMIKPDIERIEKWVLRNAFDDDENPYLPKHILYRQKEQFSDGVGYSWIDGLKDHANEQVTDAMLKHANFVYPENTPTTKEGYHYRTIFEKLFPKGAARSTVPGGPSVACSTAKAVEWDAAWSKNLDPSGRAALGVHAAAYKDAVDIKIKEPDNGSL*