AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0680034766.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680034766.01.T02 MTR_6g075210 98.969 291 3 0 1 291 35 325 0.0 606
MsG0680034766.01.T02 MTR_3g064740 87.973 291 35 0 1 291 32 322 0.0 549
MsG0680034766.01.T02 MTR_5g077090 85.567 291 42 0 1 291 23 313 0.0 531
MsG0680034766.01.T02 MTR_3g064740 85.903 227 32 0 65 291 1 227 3.29e-148 422
MsG0680034766.01.T02 MTR_6g075210 98.958 192 2 0 100 291 1 192 1.44e-141 403
MsG0680034766.01.T02 MTR_6g075210 99.248 133 1 0 159 291 1 133 2.68e-94 281
MsG0680034766.01.T02 MTR_5g075820 76.923 39 9 0 221 259 15 53 1.91e-13 67.0
MsG0680034766.01.T01 MTR_6g075210 98.154 325 6 0 1 325 1 325 0.0 673
MsG0680034766.01.T01 MTR_3g064740 83.692 325 50 1 1 325 1 322 0.0 579
MsG0680034766.01.T01 MTR_5g077090 83.871 310 50 0 16 325 4 313 0.0 556
MsG0680034766.01.T01 MTR_3g064740 85.903 227 32 0 99 325 1 227 6.84e-148 422
MsG0680034766.01.T01 MTR_6g075210 98.958 192 2 0 134 325 1 192 2.77e-141 404
MsG0680034766.01.T01 MTR_6g075210 99.248 133 1 0 193 325 1 133 3.15e-94 282
MsG0680034766.01.T01 MTR_5g075820 76.923 39 9 0 255 293 15 53 2.18e-13 67.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680034766.01.T02 AT2G02010 88.660 291 33 0 1 291 32 322 0.0 554
MsG0680034766.01.T02 AT2G02010 88.660 291 33 0 1 291 84 374 0.0 554
MsG0680034766.01.T02 AT5G17330 88.660 291 33 0 1 291 32 322 0.0 553
MsG0680034766.01.T02 AT1G65960 88.235 289 34 0 3 291 33 321 0.0 541
MsG0680034766.01.T02 AT3G17760 85.911 291 41 0 1 291 31 321 0.0 538
MsG0680034766.01.T02 AT3G17760 85.911 291 41 0 1 291 31 321 0.0 538
MsG0680034766.01.T02 AT2G02000 84.192 291 46 0 1 291 32 322 0.0 527
MsG0680034766.01.T02 AT1G65960 86.458 192 26 0 100 291 1 192 3.86e-124 359
MsG0680034766.01.T02 AT1G65960 86.458 192 26 0 100 291 1 192 3.86e-124 359
MsG0680034766.01.T02 AT1G65960 86.458 192 26 0 100 291 1 192 3.86e-124 359
MsG0680034766.01.T02 AT3G17720 74.074 162 39 1 60 221 27 185 1.48e-84 252
MsG0680034766.01.T01 AT2G02010 84.615 325 47 1 1 325 53 374 0.0 585
MsG0680034766.01.T01 AT2G02010 84.615 325 47 1 1 325 1 322 0.0 584
MsG0680034766.01.T01 AT5G17330 84.308 325 48 1 1 325 1 322 0.0 583
MsG0680034766.01.T01 AT1G65960 82.462 325 53 1 1 325 1 321 0.0 567
MsG0680034766.01.T01 AT3G17760 84.295 312 49 0 14 325 10 321 0.0 566
MsG0680034766.01.T01 AT3G17760 84.295 312 49 0 14 325 10 321 0.0 566
MsG0680034766.01.T01 AT2G02000 80.000 325 62 1 1 325 1 322 0.0 556
MsG0680034766.01.T01 AT1G65960 86.458 192 26 0 134 325 1 192 6.88e-124 360
MsG0680034766.01.T01 AT1G65960 86.458 192 26 0 134 325 1 192 6.88e-124 360
MsG0680034766.01.T01 AT1G65960 86.458 192 26 0 134 325 1 192 6.88e-124 360
MsG0680034766.01.T01 AT3G17720 74.074 162 39 1 94 255 27 185 4.19e-84 252

Find 16 sgRNAs with CRISPR-Local

Find 198 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCTGATATGCTGCATCTTT+TGG 0.270173 6:+94190590 None:intergenic
TCCTGTCACTACTGAGCTTC+AGG 0.325572 6:-94190432 MsG0680034766.01.T01:intron
TAACAAGAACTATGTTGATA+TGG 0.353769 6:-94190462 MsG0680034766.01.T01:CDS
TTCTAGATACGTGCGTGAAC+AGG 0.356943 6:-94190746 MsG0680034766.01.T01:CDS
TATCAACATAGTTCTTGTTA+AGG 0.372982 6:+94190465 None:intergenic
AATGATGAGTTGATGTTAGA+TGG 0.378531 6:-94190563 MsG0680034766.01.T01:CDS
ATCAACATAGTTCTTGTTAA+GGG 0.379347 6:+94190466 None:intergenic
TGGCTTCATTTGTTACTACT+TGG 0.383718 6:-94190523 MsG0680034766.01.T01:CDS
TTCATTTGTTACTACTTGGA+TGG 0.447228 6:-94190519 MsG0680034766.01.T01:CDS
TGGAAAACCAAGGCTTAACT+TGG 0.451331 6:-94190543 MsG0680034766.01.T01:CDS
AATGAAGCCAAGTTAAGCCT+TGG 0.475959 6:+94190536 None:intergenic
TGAGTGTGATAAGCTTATCA+TGG 0.535116 6:-94190492 MsG0680034766.01.T01:CDS
ACCTGAAGCTCAGTAGTGAC+AGG 0.552304 6:+94190431 None:intergenic
ATGATAAGCTTATCACACTC+AGG 0.609818 6:+94190494 None:intergenic
TCAACTGTCACACATCCAGA+TGG 0.610258 6:-94190799 MsG0680034766.01.T01:CDS
TGATGTTAGATGGAAAACCA+AGG 0.691803 6:-94190553 MsG0680034766.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AACTTCAAAAATTAACTATT+AGG + Chr6:94188698-94188717 None:intergenic 15.0%
!!! TCAAAGTCTAATTTTTTAAT+TGG + Chr6:94188775-94188794 None:intergenic 15.0%
!! AATTATTATTGCACAGTAAA+AGG - Chr6:94188921-94188940 MsG0680034766.01.T01:intron 20.0%
!! ACACTATATTGAAACTATAA+AGG - Chr6:94188573-94188592 MsG0680034766.01.T01:intron 20.0%
!! ATTATTATTGCACAGTAAAA+GGG - Chr6:94188922-94188941 MsG0680034766.01.T01:intron 20.0%
!! CTGTTACAATTTAAATATCT+TGG - Chr6:94189197-94189216 MsG0680034766.01.T01:CDS 20.0%
!! TATAACAAATGTTGAAAATG+AGG - Chr6:94189912-94189931 MsG0680034766.01.T01:intron 20.0%
!!! AGTGTTTTTTTAAGGAAAAA+AGG + Chr6:94187903-94187922 None:intergenic 20.0%
!!! GGGAAAATATCATTTTTTAA+TGG - Chr6:94189067-94189086 MsG0680034766.01.T01:intron 20.0%
!!! TTGATCAAGATTTTGAATTA+TGG - Chr6:94188222-94188241 MsG0680034766.01.T01:CDS 20.0%
!!! TTGTAAGTATCAAATTTTGA+GGG + Chr6:94189100-94189119 None:intergenic 20.0%
!!! TTTTTTAGATCTTTTGTGTT+TGG - Chr6:94189124-94189143 MsG0680034766.01.T01:CDS 20.0%
! ATCAACATAGTTCTTGTTAA+GGG + Chr6:94188145-94188164 None:intergenic 25.0%
! ATCAATTCAGTTCTTGAATA+GGG - Chr6:94188639-94188658 MsG0680034766.01.T01:intron 25.0%
! CAGATAAATAAGTACACTTA+TGG - Chr6:94188878-94188897 MsG0680034766.01.T01:intron 25.0%
! CATAAGTGTACTTATTTATC+TGG + Chr6:94188880-94188899 None:intergenic 25.0%
! GATAAAACATATTGTTCGTT+CGG - Chr6:94189704-94189723 MsG0680034766.01.T01:intron 25.0%
! GTATTATGTAATATAGTAGC+AGG - Chr6:94189778-94189797 MsG0680034766.01.T01:intron 25.0%
! TAACAAGAACTATGTTGATA+TGG - Chr6:94188146-94188165 MsG0680034766.01.T01:CDS 25.0%
! TATATGTCAAAATGAAGATG+AGG + Chr6:94189896-94189915 None:intergenic 25.0%
! TATATTACATAATACCAGAG+AGG + Chr6:94189773-94189792 None:intergenic 25.0%
! TATCAACATAGTTCTTGTTA+AGG + Chr6:94188146-94188165 None:intergenic 25.0%
! TCAACTAAATCTATTACCTT+TGG + Chr6:94190814-94190833 None:intergenic 25.0%
! TCTAAATCTAAAGATCCAAA+CGG + Chr6:94188507-94188526 None:intergenic 25.0%
!! ATATGTTTACGTGTTGATAT+AGG - Chr6:94187971-94187990 MsG0680034766.01.T01:CDS 25.0%
!! ATTTTGTATTCTACCATACA+AGG + Chr6:94190005-94190024 None:intergenic 25.0%
!! GGATCAAATTTTAAACTAAG+AGG - Chr6:94188594-94188613 MsG0680034766.01.T01:intron 25.0%
!! GTTGTAAGTATCAAATTTTG+AGG + Chr6:94189101-94189120 None:intergenic 25.0%
!! GTTTTTCACATCAATTATCT+TGG - Chr6:94190756-94190775 MsG0680034766.01.T01:CDS 25.0%
!! TACATCTAAAATCATGTTGA+GGG + Chr6:94189636-94189655 None:intergenic 25.0%
!! TCATGACTTGTAACTTATAT+TGG - Chr6:94190194-94190213 MsG0680034766.01.T01:intron 25.0%
!!! AAGTTGCTTTTTTGAAGAAA+GGG - Chr6:94189047-94189066 MsG0680034766.01.T01:intron 25.0%
!!! GATCAAGACTTTTAAAGAAA+AGG + Chr6:94188835-94188854 None:intergenic 25.0%
AATAAGACTAAGTGCATGTT+TGG - Chr6:94188290-94188309 MsG0680034766.01.T01:intron 30.0%
ACTATGTTAGGCTTATCATA+TGG + Chr6:94189472-94189491 None:intergenic 30.0%
AGTGATTAAATTGACGAGAT+AGG - Chr6:94188719-94188738 MsG0680034766.01.T01:intron 30.0%
ATGTGAAAAACAAGATCATC+CGG + Chr6:94190747-94190766 None:intergenic 30.0%
CATCAATTCAGTTCTTGAAT+AGG - Chr6:94188638-94188657 MsG0680034766.01.T01:intron 30.0%
CTAATGGTATAGCTCAAATT+GGG - Chr6:94188801-94188820 MsG0680034766.01.T01:intron 30.0%
CTATTCAAGAACTGAATTGA+TGG + Chr6:94188640-94188659 None:intergenic 30.0%
GAGAAATTCAATGTGAAAGT+TGG + Chr6:94190792-94190811 None:intergenic 30.0%
GCTATTTAAATATGCTACAC+AGG - Chr6:94190326-94190345 MsG0680034766.01.T01:intron 30.0%
GTGATTAAATTGACGAGATA+GGG - Chr6:94188720-94188739 MsG0680034766.01.T01:intron 30.0%
TAATGGTATAGCTCAAATTG+GGG - Chr6:94188802-94188821 MsG0680034766.01.T01:intron 30.0%
TATACTCTCATCCATCAATT+TGG + Chr6:94188645-94188626 None:intergenic 30.0%
TTCACATTGAATTTCTCCAA+AGG - Chr6:94190795-94190814 MsG0680034766.01.T01:CDS 30.0%
TTTGTTCAATTATGCAGAAC+CGG - Chr6:94189293-94189312 MsG0680034766.01.T01:CDS 30.0%
! ACATTGATACTTTTCACCAA+TGG + Chr6:94190654-94190673 None:intergenic 30.0%
! ATGGATGAGAGTATAGTATA+GGG - Chr6:94188671-94188690 MsG0680034766.01.T01:intron 30.0%
! ATGTAGCTTTTGCAAAATCA+GGG - Chr6:94188353-94188372 MsG0680034766.01.T01:intron 30.0%
! ATTTTGCAAAAGCTACATCA+GGG + Chr6:94188351-94188370 None:intergenic 30.0%
! GTACATCTAAAATCATGTTG+AGG + Chr6:94189637-94189656 None:intergenic 30.0%
! TCTTTTGGTATAGAATTCTC+TGG + Chr6:94188006-94188025 None:intergenic 30.0%
! TTCATTTGTTACTACTTGGA+TGG - Chr6:94188089-94188108 MsG0680034766.01.T01:CDS 30.0%
! TTTAGATCTTTTGTGTTTGG+TGG - Chr6:94189127-94189146 MsG0680034766.01.T01:CDS 30.0%
!! AATGATGAGTTGATGTTAGA+TGG - Chr6:94188045-94188064 MsG0680034766.01.T01:CDS 30.0%
!! GTAGTTCTGTATTTTCTTAG+AGG - Chr6:94189597-94189616 MsG0680034766.01.T01:intron 30.0%
!! GTGAAAAGTATCAATGTTAG+CGG - Chr6:94190657-94190676 MsG0680034766.01.T01:intron 30.0%
!! TAGACTTTGAAACAACCTAA+TGG - Chr6:94188785-94188804 MsG0680034766.01.T01:intron 30.0%
!! TCAGTACTTTCAAGTTTCAA+TGG + Chr6:94189255-94189274 None:intergenic 30.0%
!! TTGATCTTTGAAGCTTTGTT+TGG - Chr6:94188849-94188868 MsG0680034766.01.T01:intron 30.0%
!!! ACACACACTTAGTTTTTTGT+TGG - Chr6:94187925-94187944 MsG0680034766.01.T01:CDS 30.0%
!!! CAAGTTGCTTTTTTGAAGAA+AGG - Chr6:94189046-94189065 MsG0680034766.01.T01:intron 30.0%
!!! GTGTGTGAAGTGTTTTTTTA+AGG + Chr6:94187911-94187930 None:intergenic 30.0%
!!! GTTTAGCTTTTAAAAGGAAG+TGG - Chr6:94189419-94189438 MsG0680034766.01.T01:intron 30.0%
!!! TAGCTGGTTTAGCTTTTAAA+AGG - Chr6:94189413-94189432 MsG0680034766.01.T01:intron 30.0%
AAAATTTGCCAGGTACTTTG+AGG - Chr6:94190359-94190378 MsG0680034766.01.T01:intron 35.0%
AATATGCTACACAGGTTTGT+TGG - Chr6:94190334-94190353 MsG0680034766.01.T01:intron 35.0%
AATGGTATAGCTCAAATTGG+GGG - Chr6:94188803-94188822 MsG0680034766.01.T01:intron 35.0%
ACCATTTCAACAGCTTTCAA+TGG + Chr6:94190432-94190451 None:intergenic 35.0%
AGCAGAGAATGATAGTTTCA+GGG + Chr6:94189026-94189045 None:intergenic 35.0%
ATGATAAGCTTATCACACTC+AGG + Chr6:94188117-94188136 None:intergenic 35.0%
CAGACAAAGAGAAAATCAGA+AGG - Chr6:94189442-94189461 MsG0680034766.01.T01:intron 35.0%
CAGATAGGATCTTGATATTG+CGG - Chr6:94188254-94188273 MsG0680034766.01.T01:CDS 35.0%
CATCTATTCAATGCTCCTAT+TGG - Chr6:94189334-94189353 MsG0680034766.01.T01:intron 35.0%
CCAATTTGAGCTATACCATT+AGG + Chr6:94188803-94188822 None:intergenic 35.0%
CCTAATGGTATAGCTCAAAT+TGG - Chr6:94188800-94188819 MsG0680034766.01.T01:intron 35.0%
GATAAGCCTAACATAGTTAC+CGG - Chr6:94189475-94189494 MsG0680034766.01.T01:intron 35.0%
GATGAGGCAATAAATTTAGC+AGG + Chr6:94189880-94189899 None:intergenic 35.0%
GCTTCTTACTAAGAAGAACA+AGG - Chr6:94190533-94190552 MsG0680034766.01.T01:CDS 35.0%
GGAAAAAAGGACACTTACTT+AGG + Chr6:94187890-94187909 None:intergenic 35.0%
TCCATTGAAAGCTGTTGAAA+TGG - Chr6:94190428-94190447 MsG0680034766.01.T01:intron 35.0%
TGAGTGTGATAAGCTTATCA+TGG - Chr6:94188116-94188135 MsG0680034766.01.T01:CDS 35.0%
TGATGTTAGATGGAAAACCA+AGG - Chr6:94188055-94188074 MsG0680034766.01.T01:CDS 35.0%
TGTGTGGTTAAGAAATGTGT+TGG - Chr6:94189736-94189755 MsG0680034766.01.T01:intron 35.0%
TTAAATAGCGTCAAACATCG+AGG + Chr6:94190315-94190334 None:intergenic 35.0%
TTGAATAGGGACCAAATTGA+TGG - Chr6:94188652-94188671 MsG0680034766.01.T01:intron 35.0%
TTTGTTGGGAAAAATTTGCC+AGG - Chr6:94190349-94190368 MsG0680034766.01.T01:intron 35.0%
! ATATGCTACACAGGTTTGTT+GGG - Chr6:94190335-94190354 MsG0680034766.01.T01:intron 35.0%
! ATCTAAAATCATGTTGAGGG+TGG + Chr6:94189633-94189652 None:intergenic 35.0%
! ATCTGATATGCTGCATCTTT+TGG + Chr6:94188021-94188040 None:intergenic 35.0%
! GATGGATGAGAGTATAGTAT+AGG - Chr6:94188670-94188689 MsG0680034766.01.T01:intron 35.0%
! GATGTAGCTTTTGCAAAATC+AGG - Chr6:94188352-94188371 MsG0680034766.01.T01:intron 35.0%
! GATTTTGCAAAAGCTACATC+AGG + Chr6:94188352-94188371 None:intergenic 35.0%
! GCTGTAAAGAAGTACATTTC+TGG - Chr6:94189682-94189701 MsG0680034766.01.T01:intron 35.0%
! GTGCTATTATATTCACACAC+CGG + Chr6:94189315-94189334 None:intergenic 35.0%
! GTTCTGTATTTTCTTAGAGG+CGG - Chr6:94189600-94189619 MsG0680034766.01.T01:intron 35.0%
! TACTTTTCACCAATGGCAAA+CGG + Chr6:94190647-94190666 None:intergenic 35.0%
! TCTAAAATCATGTTGAGGGT+GGG + Chr6:94189632-94189651 None:intergenic 35.0%
! TGGCTTCATTTGTTACTACT+TGG - Chr6:94188085-94188104 MsG0680034766.01.T01:CDS 35.0%
! TTGGTGGTTGGATGAAAATT+TGG - Chr6:94189143-94189162 MsG0680034766.01.T01:CDS 35.0%
!! ATTTGTGTTGCAGCCATTTT+GGG - Chr6:94190465-94190484 MsG0680034766.01.T01:CDS 35.0%
AAACAACCCAACCAATACCA+GGG + Chr6:94190704-94190723 None:intergenic 40.0%
AAAGGAAGTGAAACTCACAG+AGG - Chr6:94190389-94190408 MsG0680034766.01.T01:intron 40.0%
AATGAAGCCAAGTTAAGCCT+TGG + Chr6:94188075-94188094 None:intergenic 40.0%
AATGTTAGCGGTCACAAGTA+CGG - Chr6:94190669-94190688 MsG0680034766.01.T01:intron 40.0%
ACTAAGAAGAACAAGGAGAC+AGG - Chr6:94190540-94190559 MsG0680034766.01.T01:CDS 40.0%
AGAAGATCAGGGTAGAGAAA+CGG + Chr6:94190615-94190634 None:intergenic 40.0%
AGAGGAAACAAAGCATGAGA+CGG + Chr6:94189940-94189959 None:intergenic 40.0%
ATGGGATACTCCAATTCATG+TGG - Chr6:94190563-94190582 MsG0680034766.01.T01:CDS 40.0%
CAAAATGGCTGCAACACAAA+TGG + Chr6:94190466-94190485 None:intergenic 40.0%
CACAGAGGATTACTATGTGA+TGG - Chr6:94190404-94190423 MsG0680034766.01.T01:intron 40.0%
CACCCTAAACTAAAGCAGAA+AGG + Chr6:94190066-94190085 None:intergenic 40.0%
CTAAAATCATGTTGAGGGTG+GGG + Chr6:94189631-94189650 None:intergenic 40.0%
CTAAATCTGACGATGGTCTA+CGG - Chr6:94188545-94188564 MsG0680034766.01.T01:intron 40.0%
CTCTCAAACAGTTTCACAAG+TGG + Chr6:94190126-94190145 None:intergenic 40.0%
GACGAGATAGGGATAGTTTA+GGG - Chr6:94188731-94188750 MsG0680034766.01.T01:intron 40.0%
GAGCAGAGAATGATAGTTTC+AGG + Chr6:94189027-94189046 None:intergenic 40.0%
GAGCTATCATAGAGAGCTTA+TGG + Chr6:94190176-94190195 None:intergenic 40.0%
GGAAATCCCATAGAAGATCA+GGG + Chr6:94190626-94190645 None:intergenic 40.0%
GTGGTTAAGAAATGTGTTGG+TGG - Chr6:94189739-94189758 MsG0680034766.01.T01:intron 40.0%
TCTCTACCCTGATCTTCTAT+GGG - Chr6:94190617-94190636 MsG0680034766.01.T01:CDS 40.0%
TCTCTCTCTAAATCTGACGA+TGG - Chr6:94188538-94188557 MsG0680034766.01.T01:intron 40.0%
TGACGAGATAGGGATAGTTT+AGG - Chr6:94188730-94188749 MsG0680034766.01.T01:intron 40.0%
TGGAAAACCAAGGCTTAACT+TGG - Chr6:94188065-94188084 MsG0680034766.01.T01:CDS 40.0%
TTAGCTCCGGTAACTATGTT+AGG + Chr6:94189484-94189503 None:intergenic 40.0%
TTCTCTACCCTGATCTTCTA+TGG - Chr6:94190616-94190635 MsG0680034766.01.T01:CDS 40.0%
! ATGTTCTCGTTTTGTCCATC+TGG + Chr6:94187827-94187846 None:intergenic 40.0%
! CATTTGTGTTGCAGCCATTT+TGG - Chr6:94190464-94190483 MsG0680034766.01.T01:CDS 40.0%
! CGCCTTTCTGCTTTAGTTTA+GGG - Chr6:94190061-94190080 MsG0680034766.01.T01:intron 40.0%
!! GATCTTTTGTGTTTGGTGGT+TGG - Chr6:94189131-94189150 MsG0680034766.01.T01:CDS 40.0%
!! GTACTTTGAGGTTGAGCTAA+AGG - Chr6:94190371-94190390 MsG0680034766.01.T01:intron 40.0%
!! TGTTTACCCTGGTATTGGTT+GGG - Chr6:94190695-94190714 MsG0680034766.01.T01:intron 40.0%
!! TTGTTTACCCTGGTATTGGT+TGG - Chr6:94190694-94190713 MsG0680034766.01.T01:intron 40.0%
AGAAGAACAAGGAGACAGGA+TGG - Chr6:94190544-94190563 MsG0680034766.01.T01:CDS 45.0%
AGGAAACAAAGCATGAGACG+GGG + Chr6:94189938-94189957 None:intergenic 45.0%
ATCAACCTGCACATTAGCTC+CGG + Chr6:94189497-94189516 None:intergenic 45.0%
ATGGGATTTCCGTTTGCCAT+TGG - Chr6:94190635-94190654 MsG0680034766.01.T01:intron 45.0%
CAAACAACCCAACCAATACC+AGG + Chr6:94190705-94190724 None:intergenic 45.0%
CAAACATCGAGGTCTCTGTT+TGG + Chr6:94190304-94190323 None:intergenic 45.0%
CGGAAATCCCATAGAAGATC+AGG + Chr6:94190627-94190646 None:intergenic 45.0%
CTATGTACGTTGTGGATGAG+TGG + Chr6:94189857-94189876 None:intergenic 45.0%
GAAGAACAAGGAGACAGGAT+GGG - Chr6:94190545-94190564 MsG0680034766.01.T01:CDS 45.0%
GAGGAAACAAAGCATGAGAC+GGG + Chr6:94189939-94189958 None:intergenic 45.0%
GTCTGACCTTACCTTTGAGT+CGG + Chr6:94189805-94189824 None:intergenic 45.0%
TAGGTTTGTCAGAATCAGCG+TGG + Chr6:94188383-94188402 None:intergenic 45.0%
TCAACTGTCACACATCCAGA+TGG - Chr6:94187809-94187828 MsG0680034766.01.T01:CDS 45.0%
TCAGAGGCAATAATGCTAGC+TGG - Chr6:94189397-94189416 MsG0680034766.01.T01:intron 45.0%
TCTGACCTTACCTTTGAGTC+GGG + Chr6:94189804-94189823 None:intergenic 45.0%
TGGTATCACAGCGAGTTTGT+TGG - Chr6:94188310-94188329 MsG0680034766.01.T01:intron 45.0%
TGGTGGAGAAAATTCCTCTC+TGG - Chr6:94189756-94189775 MsG0680034766.01.T01:intron 45.0%
TTAGCAGGCTATGTACGTTG+TGG + Chr6:94189865-94189884 None:intergenic 45.0%
TTATGGTTGCGATCGCAGAT+AGG - Chr6:94188239-94188258 MsG0680034766.01.T01:CDS 45.0%
TTCTAGATACGTGCGTGAAC+AGG - Chr6:94187862-94187881 MsG0680034766.01.T01:CDS 45.0%
! AGTCAGCGTTGAACCCAAAA+TGG + Chr6:94190481-94190500 None:intergenic 45.0%
! GCGCCTTTCTGCTTTAGTTT+AGG - Chr6:94190060-94190079 MsG0680034766.01.T01:intron 45.0%
! TAGCTCAACCTCAAAGTACC+TGG + Chr6:94190370-94190389 None:intergenic 45.0%
!! AAGTACGGTCTTGTTTACCC+TGG - Chr6:94190684-94190703 MsG0680034766.01.T01:intron 45.0%
!! CAGTAGGTGTTGGAACTGTA+GGG - Chr6:94189371-94189390 MsG0680034766.01.T01:intron 45.0%
!! CGCTGATTCTGACAAACCTA+CGG - Chr6:94188383-94188402 MsG0680034766.01.T01:intron 45.0%
!! CTGGTATTGGTTGGGTTGTT+TGG - Chr6:94190703-94190722 MsG0680034766.01.T01:intron 45.0%
!! GAGACATAAAGCTGACTTGC+CGG - Chr6:94190725-94190744 MsG0680034766.01.T01:intron 45.0%
!! GGTCTTGTTTACCCTGGTAT+TGG - Chr6:94190690-94190709 MsG0680034766.01.T01:intron 45.0%
!! TGCATGCTTGTTATCACCGT+AGG + Chr6:94188402-94188421 None:intergenic 45.0%
!! TTTATGGTGTTGCAGCCGTT+TGG - Chr6:94188489-94188508 MsG0680034766.01.T01:intron 45.0%
!!! ATTTTGGGTTCAACGCTGAC+TGG - Chr6:94190480-94190499 MsG0680034766.01.T01:CDS 45.0%
!!! TAAAATTATAAGTTATTTTA+TGG - Chr6:94188473-94188492 MsG0680034766.01.T01:intron 5.0%
ACCTGAAGCTCAGTAGTGAC+AGG + Chr6:94188180-94188199 None:intergenic 50.0%
AGGCTGAAGGCCTAAAGCAA+GGG + Chr6:94189831-94189850 None:intergenic 50.0%
AGTTACCGGAGCTAATGTGC+AGG - Chr6:94189489-94189508 MsG0680034766.01.T01:intron 50.0%
ATTCATGTGGATGCTGCGAG+CGG - Chr6:94190576-94190595 MsG0680034766.01.T01:CDS 50.0%
CAATGCTCCTATTGGTGCAG+AGG - Chr6:94189342-94189361 MsG0680034766.01.T01:intron 50.0%
CGTTCGGACAGAAACATGTG+TGG - Chr6:94189720-94189739 MsG0680034766.01.T01:intron 50.0%
CTCGCAGCATCCACATGAAT+TGG + Chr6:94190576-94190595 None:intergenic 50.0%
GACTGCATGCTCACTTCGAT+AGG - Chr6:94189569-94189588 MsG0680034766.01.T01:intron 50.0%
GAGGAAACTGCAGTAGGTGT+TGG - Chr6:94189361-94189380 MsG0680034766.01.T01:intron 50.0%
GCAATGTGAGGCCTAAAGCT+AGG + Chr6:94189972-94189991 None:intergenic 50.0%
GCAGTTTCCTCTGCACCAAT+AGG + Chr6:94189352-94189371 None:intergenic 50.0%
TAGGCTGAAGGCCTAAAGCA+AGG + Chr6:94189832-94189851 None:intergenic 50.0%
TCCTGTCACTACTGAGCTTC+AGG - Chr6:94188176-94188195 MsG0680034766.01.T01:CDS 50.0%
TGGAACTGTAGGGTCATCAG+AGG - Chr6:94189381-94189400 MsG0680034766.01.T01:intron 50.0%
TTTAGGCCTCACATTGCCTG+CGG - Chr6:94189975-94189994 MsG0680034766.01.T01:intron 50.0%
! AAAGCTAGGTGTCGCATCAG+AGG + Chr6:94189958-94189977 None:intergenic 50.0%
! AACGCTGACTGGAGAGTTTG+AGG - Chr6:94190491-94190510 MsG0680034766.01.T01:CDS 50.0%
! ACGTTGTGGATGAGTGGACT+AGG + Chr6:94189851-94189870 None:intergenic 50.0%
! ATAGCTCAAATTGGGGGTGC+AGG - Chr6:94188809-94188828 MsG0680034766.01.T01:intron 50.0%
! CTGATGCGACACCTAGCTTT+AGG - Chr6:94189958-94189977 MsG0680034766.01.T01:intron 50.0%
!! GCAGTAGGTGTTGGAACTGT+AGG - Chr6:94189370-94189389 MsG0680034766.01.T01:intron 50.0%
GGTGCAGAGGAAACTGCAGT+AGG - Chr6:94189355-94189374 MsG0680034766.01.T01:intron 55.0%
GTCAGACGAGCCCTTGCTTT+AGG - Chr6:94189818-94189837 MsG0680034766.01.T01:intron 55.0%
TAGTAGCAGGCCCGACTCAA+AGG - Chr6:94189791-94189810 MsG0680034766.01.T01:intron 55.0%
!! GGATGAGTGGACTAGGCTGA+AGG + Chr6:94189844-94189863 None:intergenic 55.0%
GCAGGCCCGACTCAAAGGTA+AGG - Chr6:94189796-94189815 MsG0680034766.01.T01:intron 60.0%
TACCATACAAGGCCGACCGC+AGG + Chr6:94189994-94190013 None:intergenic 60.0%
CATGTGGATGCTGCGAGCGG+TGG - Chr6:94190579-94190598 MsG0680034766.01.T01:CDS 65.0%
GGCCTCACATTGCCTGCGGT+CGG - Chr6:94189979-94189998 MsG0680034766.01.T01:intron 65.0%
! TGCCTGCGGTCGGCCTTGTA+TGG - Chr6:94189989-94190008 MsG0680034766.01.T01:intron 65.0%
GGCCGACCGCAGGCAATGTG+AGG + Chr6:94189984-94190003 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
Chr6 gene 94187797 94190833 94187797 ID=MsG0680034766.01;Name=MsG0680034766.01
Chr6 mRNA 94187797 94190833 94187797 ID=MsG0680034766.01.T01;Parent=MsG0680034766.01;Name=MsG0680034766.01.T01;_AED=0.48;_eAED=0.49;_QI=0|0|0|1|0.66|0.25|4|0|328
Chr6 exon 94190433 94190637 94190433 ID=MsG0680034766.01.T01:exon:13132;Parent=MsG0680034766.01.T01
Chr6 exon 94190739 94190833 94190739 ID=MsG0680034766.01.T01:exon:13131;Parent=MsG0680034766.01.T01
Chr6 CDS 94190739 94190833 94190739 ID=MsG0680034766.01.T01:cds;Parent=MsG0680034766.01.T01
Chr6 CDS 94190433 94190637 94190433 ID=MsG0680034766.01.T01:cds;Parent=MsG0680034766.01.T01
Chr6 CDS 94189120 94189320 94189120 ID=MsG0680034766.01.T01:cds;Parent=MsG0680034766.01.T01
Chr6 CDS 94187797 94188282 94187797 ID=MsG0680034766.01.T01:cds;Parent=MsG0680034766.01.T01
Chr6 mRNA 94187797 94190630 94187797 ID=MsG0680034766.01.T02;Parent=MsG0680034766.01;Name=MsG0680034766.01.T02;_AED=0.48;_eAED=0.49;_QI=0|0|0|1|0.5|0|3|0|294
Chr6 exon 94190433 94190630 94190433 ID=MsG0680034766.01.T02:exon:13135;Parent=MsG0680034766.01.T02
Chr6 CDS 94190433 94190630 94190433 ID=MsG0680034766.01.T02:cds;Parent=MsG0680034766.01.T02
Chr6 CDS 94189120 94189320 94189120 ID=MsG0680034766.01.T02:cds;Parent=MsG0680034766.01.T02
Chr6 CDS 94187797 94188282 94187797 ID=MsG0680034766.01.T02:cds;Parent=MsG0680034766.01.T02
Gene Sequence

>MsG0680034766.01.T02

ATGCCAGAGAATTCTATACCAAAAGATGCAGCATATCAGATAATAAATGATGAGTTGATGTTAGATGGAAAACCAAGGCTTAACTTGGCTTCATTTGTTACTACTTGGATGGAACCTGAGTGTGATAAGCTTATCATGGATTCCCTTAACAAGAACTATGTTGATATGGATGAGTATCCTGTCACTACTGAGCTTCAGAACCGGTGTGTGAATATAATAGCACATCTATTCAATGCTCCTATTGGTGCAGAGGAAACTGCAGTAGGTGTTGGAACTGTAGGGTCATCAGAGGCAATAATGCTAGCTGGTTTAGCTTTTAAAAGGAAGTGGCAGACAAAGAGAAAATCAGAAGGCAAACCATATGATAAGCCTAACATAGTTACCGGAGCTAATGTGCAGGTTTGTTGGGAAAAATTTGCCAGGTACTTTGAGGTTGAGCTAAAGGAAGTGAAACTCACAGAGGATTACTATGTGATGGATCCATTGAAAGCTGTTGAAATGGTAGATGAGAACACCATTTGTGTTGCAGCCATTTTGGGTTCAACGCTGACTGGAGAGTTTGAGGATGTGAAGCTTCTCAACGAGCTTCTTACTAAGAAGAACAAGGAGACAGGATGGGATACTCCAATTCATGTGGATGCTGCGAGCGGTGGATTTGTTGCTCCGTTTCTCTACCCTGATCTTCTATGGGATTTCCGTTTGCCATTGGTGAAAAGTATCAATGTTAGCGGTCACAAGTACGGTCTTGTTTACCCTGGTATTGGTTGGGTTGTTTGGAGACATAAAGCTGACTTGCCGGATGATCTTGTTTTTCACATCAATTATCTTGGATCTGATCAGCCAACTTTCACATTGAATTTCTCCAAAGGTAATAGATTTAGTTGA

>MsG0680034766.01.T01

ATGGTGATTTCTTCAACTGTCACACATCCAGATGGACAAAACGAGAACATAGCATGCACTTTCGCTTCTAGATACGTGCGTGAACAGGTTCCTAAGTTCAAGATGCCAGAGAATTCTATACCAAAAGATGCAGCATATCAGATAATAAATGATGAGTTGATGTTAGATGGAAAACCAAGGCTTAACTTGGCTTCATTTGTTACTACTTGGATGGAACCTGAGTGTGATAAGCTTATCATGGATTCCCTTAACAAGAACTATGTTGATATGGATGAGTATCCTGTCACTACTGAGCTTCAGAACCGGTGTGTGAATATAATAGCACATCTATTCAATGCTCCTATTGGTGCAGAGGAAACTGCAGTAGGTGTTGGAACTGTAGGGTCATCAGAGGCAATAATGCTAGCTGGTTTAGCTTTTAAAAGGAAGTGGCAGACAAAGAGAAAATCAGAAGGCAAACCATATGATAAGCCTAACATAGTTACCGGAGCTAATGTGCAGGTTTGTTGGGAAAAATTTGCCAGGTACTTTGAGGTTGAGCTAAAGGAAGTGAAACTCACAGAGGATTACTATGTGATGGATCCATTGAAAGCTGTTGAAATGGTAGATGAGAACACCATTTGTGTTGCAGCCATTTTGGGTTCAACGCTGACTGGAGAGTTTGAGGATGTGAAGCTTCTCAACGAGCTTCTTACTAAGAAGAACAAGGAGACAGGATGGGATACTCCAATTCATGTGGATGCTGCGAGCGGTGGATTTGTTGCTCCGTTTCTCTACCCTGATCTTCTATGGGATTTCCGTTTGCCATTGGTGAAAAGTATCAATGTTAGCGGTCACAAGTACGGTCTTGTTTACCCTGGTATTGGTTGGGTTGTTTGGAGACATAAAGCTGACTTGCCGGATGATCTTGTTTTTCACATCAATTATCTTGGATCTGATCAGCCAACTTTCACATTGAATTTCTCCAAAGGTAATAGATTTAGTTGA

Protein sequence

>MsG0680034766.01.T02

MPENSIPKDAAYQIINDELMLDGKPRLNLASFVTTWMEPECDKLIMDSLNKNYVDMDEYPVTTELQNRCVNIIAHLFNAPIGAEETAVGVGTVGSSEAIMLAGLAFKRKWQTKRKSEGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLTEDYYVMDPLKAVEMVDENTICVAAILGSTLTGEFEDVKLLNELLTKKNKETGWDTPIHVDAASGGFVAPFLYPDLLWDFRLPLVKSINVSGHKYGLVYPGIGWVVWRHKADLPDDLVFHINYLGSDQPTFTLNFSKGNRFS*

>MsG0680034766.01.T01

MVISSTVTHPDGQNENIACTFASRYVREQVPKFKMPENSIPKDAAYQIINDELMLDGKPRLNLASFVTTWMEPECDKLIMDSLNKNYVDMDEYPVTTELQNRCVNIIAHLFNAPIGAEETAVGVGTVGSSEAIMLAGLAFKRKWQTKRKSEGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLTEDYYVMDPLKAVEMVDENTICVAAILGSTLTGEFEDVKLLNELLTKKNKETGWDTPIHVDAASGGFVAPFLYPDLLWDFRLPLVKSINVSGHKYGLVYPGIGWVVWRHKADLPDDLVFHINYLGSDQPTFTLNFSKGNRFS*