AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380017367.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380017367.01.T01 MTR_3g106030 93.562 233 15 0 1 233 153 385 5.50e-149 420
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380017367.01.T01 AT4G31805 32.258 217 123 5 1 217 118 310 1.02e-16 78.2
MsG0380017367.01.T01 AT5G10890 56.923 65 28 0 155 219 219 283 6.43e-14 70.1
MsG0380017367.01.T01 AT5G10890 56.923 65 28 0 155 219 258 322 8.79e-14 69.7

Find 97 sgRNAs with CRISPR-Local

Find 163 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CACTGCCGGTAACAATATTT+TGG 0.215321 3:+95372153 None:intergenic
GCAACGGTTGCAGCTGTATT+TGG 0.264008 3:-95373136 MsG0380017367.01.T01:CDS
AAAGTAAATCGAGATGTTTC+TGG 0.264169 3:+95372254 None:intergenic
TCTTTCAATTCATTCATTAA+TGG 0.274376 3:+95374167 None:intergenic
GCGGCTTGTTGCTTGGTTGC+TGG 0.282115 3:-95374253 MsG0380017367.01.T01:five_prime_UTR
TTTAAGTTCAGTCAAGTTGT+AGG 0.321432 3:-95372210 MsG0380017367.01.T01:exon
ACTAAAATGAGCTTAGTAAA+TGG 0.329176 3:-95373457 MsG0380017367.01.T01:exon
GTCTTCTGGAGTAAATGTTT+TGG 0.334849 3:-95372067 MsG0380017367.01.T01:three_prime_UTR
GCCTGTGTATGTACTCAATT+AGG 0.340646 3:-95371965 MsG0380017367.01.T01:three_prime_UTR
CTGAAGCTCGTTAATTTCTT+CGG 0.357000 3:+95373179 None:intergenic
AAAAGTGAGAGTTCAAGTTT+TGG 0.359309 3:-95372497 MsG0380017367.01.T01:CDS
GCAAGTTATGATATGTCATT+TGG 0.359466 3:-95372449 MsG0380017367.01.T01:CDS
AGAATCCGCCGATTCTTATT+CGG 0.360215 3:+95374218 None:intergenic
TTATGGGTGGAGTGGGAATC+GGG 0.365704 3:+95374413 None:intergenic
CACCTCGGCGGCTTGTTGCT+TGG 0.373646 3:-95374260 MsG0380017367.01.T01:five_prime_UTR
GTTCTACAGGGCAGTTAGAT+TGG 0.375424 3:-95373535 MsG0380017367.01.T01:intron
TTGGTTGCTGGCGGCTATGA+TGG 0.381062 3:-95374241 MsG0380017367.01.T01:five_prime_UTR
GAGGACGGTTTCAATAGATT+TGG 0.383692 3:-95372040 MsG0380017367.01.T01:three_prime_UTR
CGAAGAAATTAACGAGCTTC+AGG 0.386784 3:-95373178 MsG0380017367.01.T01:CDS
ATGCACCAAAATATTGTTAC+CGG 0.390341 3:-95372158 MsG0380017367.01.T01:three_prime_UTR
AGAAGGAGACAAGGAGTTCT+TGG 0.393368 3:-95372313 MsG0380017367.01.T01:CDS
GACACGTAAACGACGGTTAT+GGG 0.400067 3:+95374397 None:intergenic
GTTATGGGTGGAGTGGGAAT+CGG 0.405646 3:+95374412 None:intergenic
CAATAGATTTGGTTCATTGT+TGG 0.405715 3:-95372029 MsG0380017367.01.T01:three_prime_UTR
AACCTTCTCTCCAGTTCAAC+TGG 0.406308 3:+95372419 None:intergenic
GGTTGAATTGCGGAAAGAAA+TGG 0.411911 3:-95373436 MsG0380017367.01.T01:CDS
TGGAGTCCCTCCAGTTGAAC+TGG 0.423014 3:-95372429 MsG0380017367.01.T01:CDS
CGACACGTAAACGACGGTTA+TGG 0.423236 3:+95374396 None:intergenic
GCCAACGGAGACGGCGGCGG+CGG 0.436617 3:+95374346 None:intergenic
TACCGGCAGTGCAGTATTTG+TGG 0.444583 3:-95372141 MsG0380017367.01.T01:three_prime_UTR
CGTCTCCGTTGGCTCTTCAA+TGG 0.454018 3:-95374336 MsG0380017367.01.T01:five_prime_UTR
TTGAATATCAGTGATGGAAA+AGG 0.454807 3:+95373329 None:intergenic
GCCGCCGAGGTGAATAGCTT+TGG 0.459310 3:+95374271 None:intergenic
GGCGGCGGCGGCGTCTTCGT+CGG 0.462526 3:+95374358 None:intergenic
GGTGGAGTGGGAATCGGGGA+AGG 0.469195 3:+95374418 None:intergenic
TTCAACTCTAACTGAACATA+CGG 0.474371 3:+95373261 None:intergenic
AATGAGAGAAAAGAAATTGA+AGG 0.486414 3:-95371998 MsG0380017367.01.T01:three_prime_UTR
ATCGGCGGATTCTCAAACGC+CGG 0.490015 3:-95374208 MsG0380017367.01.T01:five_prime_UTR
GATGTTTCTGGAACATGATA+CGG 0.490405 3:+95372266 None:intergenic
AATTAGGTTATATAGATGTC+TGG 0.491142 3:-95371949 MsG0380017367.01.T01:three_prime_UTR
AATGTGAATTGGCAGGTTGC+TGG 0.494275 3:-95372536 MsG0380017367.01.T01:intron
TACTTTCCCACTTGATCCTG+AGG 0.497820 3:-95372237 MsG0380017367.01.T01:CDS
GCCGCCGCCGCCGTCTCCGT+TGG 0.503428 3:-95374347 MsG0380017367.01.T01:five_prime_UTR
AGAAATTGAAGGGAGGCAAA+TGG 0.512569 3:-95371987 MsG0380017367.01.T01:three_prime_UTR
AACCACAAATACTGCACTGC+CGG 0.516755 3:+95372139 None:intergenic
AGAGCCAACGGAGACGGCGG+CGG 0.518029 3:+95374343 None:intergenic
TCCGTTGGCTCTTCAATGGA+AGG 0.529629 3:-95374332 MsG0380017367.01.T01:five_prime_UTR
TGCATTTGAAGACGCACCAC+AGG 0.536911 3:-95373103 MsG0380017367.01.T01:CDS
TATGGGTGGAGTGGGAATCG+GGG 0.542269 3:+95374414 None:intergenic
GTGGAGTGGGAATCGGGGAA+GGG 0.543087 3:+95374419 None:intergenic
GCGACGAGGGAATCTTCTCC+CGG 0.547875 3:+95374189 None:intergenic
CATTGAAGAGCCAACGGAGA+CGG 0.550176 3:+95374337 None:intergenic
TCGGCGGATTCTCAAACGCC+GGG 0.552204 3:-95374207 MsG0380017367.01.T01:five_prime_UTR
TTCGTCGGCGAGAAGAATAT+CGG 0.554794 3:+95374373 None:intergenic
TATGATGGCCGAATAAGAAT+CGG 0.557150 3:-95374226 MsG0380017367.01.T01:five_prime_UTR
CTTTGGCAGAACGAGAAGAA+TGG 0.557805 3:+95374288 None:intergenic
ATATCATAACTTGCTTCTTG+AGG 0.560614 3:+95372458 None:intergenic
ATGAGAGAAAAGAAATTGAA+GGG 0.562021 3:-95371997 MsG0380017367.01.T01:three_prime_UTR
CTTAGTAAATGGTTGAATTG+CGG 0.564649 3:-95373446 MsG0380017367.01.T01:exon
GCTTGTTGCTTGGTTGCTGG+CGG 0.564668 3:-95374250 MsG0380017367.01.T01:five_prime_UTR
AACTTCTTGAATATCAGTGA+TGG 0.565675 3:+95373323 None:intergenic
ACGACGGTTATGGGTGGAGT+GGG 0.570344 3:+95374406 None:intergenic
TCATTCATTAATGGCGACGA+GGG 0.574385 3:+95374176 None:intergenic
TCAAGAACGGATAACAGAGC+TGG 0.576464 3:-95372372 MsG0380017367.01.T01:CDS
ACTGAACTTAAAGCAGCCTC+AGG 0.577842 3:+95372221 None:intergenic
GATGTCTGGAAGCTACTAGT+AGG 0.577956 3:-95371935 MsG0380017367.01.T01:three_prime_UTR
ATGTTTCTGGAACATGATAC+GGG 0.579459 3:+95372267 None:intergenic
CTCCAGTTGAACTGGAGAGA+AGG 0.580823 3:-95372421 MsG0380017367.01.T01:CDS
AATTTGAATATGAGTTGCAA+CGG 0.582978 3:-95373152 MsG0380017367.01.T01:CDS
TTTAAGCTAGGAGTTGGGTG+TGG 0.582978 3:-95373502 MsG0380017367.01.T01:five_prime_UTR
GTAATCCTTCAAAACATGAA+AGG 0.583279 3:-95373411 MsG0380017367.01.T01:CDS
TTTACCTCAACTCTTTCCTG+TGG 0.584205 3:+95373087 None:intergenic
CACGCAAAAGCTCAATGAGA+AGG 0.589407 3:-95372330 MsG0380017367.01.T01:CDS
AAAGCAGCCTCAGGATCAAG+TGG 0.590484 3:+95372230 None:intergenic
GAATCTATATAATGAAGCAC+AGG 0.592285 3:+95372110 None:intergenic
TGAAGAGCCAACGGAGACGG+CGG 0.593176 3:+95374340 None:intergenic
TTCTCTCCAGTTCAACTGGA+GGG 0.593387 3:+95372423 None:intergenic
AGAGAAAAGAAATTGAAGGG+AGG 0.601047 3:-95371994 MsG0380017367.01.T01:three_prime_UTR
AGCTCAATGAGAAGGAGACA+AGG 0.607583 3:-95372322 MsG0380017367.01.T01:CDS
GCCTTCCATTGAAGAGCCAA+CGG 0.608454 3:+95374331 None:intergenic
AACCAAGCAACAAGCCGCCG+AGG 0.608659 3:+95374258 None:intergenic
AACGACGGTTATGGGTGGAG+TGG 0.610271 3:+95374405 None:intergenic
CGCACCACAGGAAAGAGTTG+AGG 0.639490 3:-95373091 MsG0380017367.01.T01:intron
TTGAAACTAGACTTCAAGAA+CGG 0.644074 3:-95372385 MsG0380017367.01.T01:CDS
GTTAGAGTTGAAAAGCAACA+CGG 0.646861 3:-95373250 MsG0380017367.01.T01:CDS
ACCTAATTGAGTACATACAC+AGG 0.656582 3:+95371964 None:intergenic
AAGCAGCCTCAGGATCAAGT+GGG 0.658826 3:+95372231 None:intergenic
ACGTAAACGACGGTTATGGG+TGG 0.662070 3:+95374400 None:intergenic
TTCATTCATTAATGGCGACG+AGG 0.662776 3:+95374175 None:intergenic
CTTCTCTCCAGTTCAACTGG+AGG 0.667736 3:+95372422 None:intergenic
TTAGAGTTGAAAAGCAACAC+GGG 0.672152 3:-95373249 MsG0380017367.01.T01:CDS
GCCAAAGCTATTCACCTCGG+CGG 0.685068 3:-95374272 MsG0380017367.01.T01:five_prime_UTR
GATGGCCGAATAAGAATCGG+CGG 0.690634 3:-95374223 MsG0380017367.01.T01:five_prime_UTR
GAACGAGAAGAATGGTGTGG+TGG 0.702747 3:+95374296 None:intergenic
TCTGCCAAAGCTATTCACCT+CGG 0.732080 3:-95374275 MsG0380017367.01.T01:five_prime_UTR
TATCGGCGACACGTAAACGA+CGG 0.753180 3:+95374390 None:intergenic
GCAGAACGAGAAGAATGGTG+TGG 0.755828 3:+95374293 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATAGAAAAATATTAACTA+AGG + Chr3:95373303-95373322 None:intergenic 10.0%
!!! ATTATTTGAGATAATTATAT+AGG + Chr3:95372370-95372389 None:intergenic 10.0%
!! ATAATTATATAGGCTTATAT+AGG + Chr3:95372360-95372379 None:intergenic 15.0%
!!! GTTAATTTTGTAGTTTATTA+AGG - Chr3:95372470-95372489 MsG0380017367.01.T01:CDS 15.0%
!! AAATCCAAAATAATTTCACT+AGG + Chr3:95372627-95372646 None:intergenic 20.0%
!! AATATTAACTAAGGTATAAC+TGG + Chr3:95373294-95373313 None:intergenic 20.0%
!! ATTTGTGTTTACTTTATTCT+GGG - Chr3:95373667-95373686 MsG0380017367.01.T01:intron 20.0%
!! GTAAACACAAATATAAAATC+AGG + Chr3:95373659-95373678 None:intergenic 20.0%
!! GTTTGTAGTTAACTTTATAA+TGG - Chr3:95372688-95372707 MsG0380017367.01.T01:intron 20.0%
!! TATTTGTGTTTACTTTATTC+TGG - Chr3:95373666-95373685 MsG0380017367.01.T01:intron 20.0%
!! TCTTTCAATTCATTCATTAA+TGG + Chr3:95372089-95372108 None:intergenic 20.0%
!! TTATGAATCATATAGTTGAA+AGG + Chr3:95373434-95373453 None:intergenic 20.0%
!! TTGAAAGACAATATCTAAAT+GGG - Chr3:95373471-95373490 MsG0380017367.01.T01:five_prime_UTR 20.0%
!!! TTATTTTTTGTTTAGTCTTC+TGG - Chr3:95374172-95374191 MsG0380017367.01.T01:five_prime_UTR 20.0%
!!! TTTTCCTAGTGAAATTATTT+TGG - Chr3:95372620-95372639 MsG0380017367.01.T01:intron 20.0%
! AAATTAACTGTAACTAACAG+AGG + Chr3:95372458-95372477 None:intergenic 25.0%
! AATGAGAGAAAAGAAATTGA+AGG - Chr3:95374255-95374274 MsG0380017367.01.T01:five_prime_UTR 25.0%
! AATTAGGTTATATAGATGTC+TGG - Chr3:95374304-95374323 MsG0380017367.01.T01:five_prime_UTR 25.0%
! AATTTGAATATGAGTTGCAA+CGG - Chr3:95373101-95373120 MsG0380017367.01.T01:CDS 25.0%
! ACTAAAATGAGCTTAGTAAA+TGG - Chr3:95372796-95372815 MsG0380017367.01.T01:intron 25.0%
! ATGAGAGAAAAGAAATTGAA+GGG - Chr3:95374256-95374275 MsG0380017367.01.T01:five_prime_UTR 25.0%
! CATCATATTCAATGAGTATA+AGG - Chr3:95372560-95372579 MsG0380017367.01.T01:intron 25.0%
! GTGATAACAATTTCAAGAAT+TGG + Chr3:95372411-95372430 None:intergenic 25.0%
! GTTGAAAGACAATATCTAAA+TGG - Chr3:95373470-95373489 MsG0380017367.01.T01:five_prime_UTR 25.0%
! TAAAGTTAACTACAAACACA+AGG + Chr3:95372685-95372704 None:intergenic 25.0%
! TACAAGCAATATTACAATCA+GGG - Chr3:95373350-95373369 MsG0380017367.01.T01:CDS 25.0%
! TAGTTAACTTTATAATGGTG+CGG - Chr3:95372693-95372712 MsG0380017367.01.T01:intron 25.0%
! TTACAAGCAATATTACAATC+AGG - Chr3:95373349-95373368 MsG0380017367.01.T01:CDS 25.0%
!! ATAATTTTCATAACCTGTGT+CGG + Chr3:95373568-95373587 None:intergenic 25.0%
!! TCTATTTGTTGAGTCTTTAA+TGG - Chr3:95373316-95373335 MsG0380017367.01.T01:CDS 25.0%
!! TTCAATTTCTTTTCTCTCAT+TGG + Chr3:95374256-95374275 None:intergenic 25.0%
!!! AAGTTTTGGCGAAATAATAA+TGG - Chr3:95373770-95373789 MsG0380017367.01.T01:intron 25.0%
!!! AGTTTATTAAGGTTAGTTTG+TGG - Chr3:95372481-95372500 MsG0380017367.01.T01:CDS 25.0%
AAAGTAAATCGAGATGTTTC+TGG + Chr3:95374002-95374021 None:intergenic 30.0%
AACAACTTACAAAGAGTCAA+AGG + Chr3:95373627-95373646 None:intergenic 30.0%
AACTTCTTGAATATCAGTGA+TGG + Chr3:95372933-95372952 None:intergenic 30.0%
AGTTAACTTTATAATGGTGC+GGG - Chr3:95372694-95372713 MsG0380017367.01.T01:intron 30.0%
AGTTGAAAGGTTTATGAAAC+TGG + Chr3:95373421-95373440 None:intergenic 30.0%
ATATAGGCTTATATAGGCTT+AGG + Chr3:95372354-95372373 None:intergenic 30.0%
ATGCACCAAAATATTGTTAC+CGG - Chr3:95374095-95374114 MsG0380017367.01.T01:intron 30.0%
ATTTATCTCCTGAGTTTGAT+AGG - Chr3:95373218-95373237 MsG0380017367.01.T01:CDS 30.0%
CTTAGTAAATGGTTGAATTG+CGG - Chr3:95372807-95372826 MsG0380017367.01.T01:intron 30.0%
GAATCTATATAATGAAGCAC+AGG + Chr3:95374146-95374165 None:intergenic 30.0%
GAATTGCTGAAAATGTGAAT+TGG - Chr3:95373706-95373725 MsG0380017367.01.T01:intron 30.0%
GCAAGTTATGATATGTCATT+TGG - Chr3:95373804-95373823 MsG0380017367.01.T01:intron 30.0%
GTAATCCTTCAAAACATGAA+AGG - Chr3:95372842-95372861 MsG0380017367.01.T01:intron 30.0%
GTGCAAAATTATCACTTTCT+TGG + Chr3:95373272-95373291 None:intergenic 30.0%
TAAGCATAACAGTAGCAATT+AGG + Chr3:95372198-95372217 None:intergenic 30.0%
TTACAAAGAGTCAAAGGATA+CGG + Chr3:95373621-95373640 None:intergenic 30.0%
TTCAACTCTAACTGAACATA+CGG + Chr3:95372995-95373014 None:intergenic 30.0%
TTGAAACTAGACTTCAAGAA+CGG - Chr3:95373868-95373887 MsG0380017367.01.T01:intron 30.0%
TTGACTCTTTGTAAGTTGTT+GGG - Chr3:95373627-95373646 MsG0380017367.01.T01:intron 30.0%
TTTATCTCCTGAGTTTGATA+GGG - Chr3:95373219-95373238 MsG0380017367.01.T01:CDS 30.0%
TTTGACTCTTTGTAAGTTGT+TGG - Chr3:95373626-95373645 MsG0380017367.01.T01:intron 30.0%
! CAATAGATTTGGTTCATTGT+TGG - Chr3:95374224-95374243 MsG0380017367.01.T01:five_prime_UTR 30.0%
! GCTTTTGCGAATTAATTGAA+GGG + Chr3:95372973-95372992 None:intergenic 30.0%
! TTGAATATCAGTGATGGAAA+AGG + Chr3:95372927-95372946 None:intergenic 30.0%
! TTTAAGTTCAGTCAAGTTGT+AGG - Chr3:95374043-95374062 MsG0380017367.01.T01:intron 30.0%
!! AAAAGTGAGAGTTCAAGTTT+TGG - Chr3:95373756-95373775 MsG0380017367.01.T01:intron 30.0%
!! ATATCATAACTTGCTTCTTG+AGG + Chr3:95373798-95373817 None:intergenic 30.0%
ACCTAATTGAGTACATACAC+AGG + Chr3:95374292-95374311 None:intergenic 35.0%
AGAGAAAAGAAATTGAAGGG+AGG - Chr3:95374259-95374278 MsG0380017367.01.T01:five_prime_UTR 35.0%
CTGAAGCTCGTTAATTTCTT+CGG + Chr3:95373077-95373096 None:intergenic 35.0%
GTTAGAGTTGAAAAGCAACA+CGG - Chr3:95373003-95373022 MsG0380017367.01.T01:intron 35.0%
TATGATGGCCGAATAAGAAT+CGG - Chr3:95372027-95372046 MsG0380017367.01.T01:three_prime_UTR 35.0%
TGAAAGGTTTATGAAACTGG+TGG + Chr3:95373418-95373437 None:intergenic 35.0%
TTAGAGTTGAAAAGCAACAC+GGG - Chr3:95373004-95373023 MsG0380017367.01.T01:intron 35.0%
TTATCTCCTGAGTTTGATAG+GGG - Chr3:95373220-95373239 MsG0380017367.01.T01:CDS 35.0%
! GGCTTTTGCGAATTAATTGA+AGG + Chr3:95372974-95372993 None:intergenic 35.0%
! TTTTCACTGTAATGCCCTTT+CGG - Chr3:95373494-95373513 MsG0380017367.01.T01:five_prime_UTR 35.0%
!! ATACGTTTTAAGCTAGGAGT+TGG - Chr3:95372745-95372764 MsG0380017367.01.T01:intron 35.0%
!! ATGTTTCTGGAACATGATAC+GGG + Chr3:95373989-95374008 None:intergenic 35.0%
!! GATGTTTCTGGAACATGATA+CGG + Chr3:95373990-95374009 None:intergenic 35.0%
!! GGAACAATACGTTTTAAGCT+AGG - Chr3:95372739-95372758 MsG0380017367.01.T01:intron 35.0%
!! TACGTTTTAAGCTAGGAGTT+GGG - Chr3:95372746-95372765 MsG0380017367.01.T01:intron 35.0%
!!! AAATGTTTTGGTTTGGAGGA+CGG - Chr3:95374198-95374217 MsG0380017367.01.T01:five_prime_UTR 35.0%
!!! CTGGAGTAAATGTTTTGGTT+TGG - Chr3:95374191-95374210 MsG0380017367.01.T01:five_prime_UTR 35.0%
!!! GAGTAAATGTTTTGGTTTGG+AGG - Chr3:95374194-95374213 MsG0380017367.01.T01:five_prime_UTR 35.0%
!!! GTCTTCTGGAGTAAATGTTT+TGG - Chr3:95374186-95374205 MsG0380017367.01.T01:five_prime_UTR 35.0%
!!! TGAACTCTCACTTTTTGAAC+TGG + Chr3:95373751-95373770 None:intergenic 35.0%
AGAAATTGAAGGGAGGCAAA+TGG - Chr3:95374266-95374285 MsG0380017367.01.T01:five_prime_UTR 40.0%
CGAAGAAATTAACGAGCTTC+AGG - Chr3:95373075-95373094 MsG0380017367.01.T01:intron 40.0%
GAGGACGGTTTCAATAGATT+TGG - Chr3:95374213-95374232 MsG0380017367.01.T01:five_prime_UTR 40.0%
GCCTGTGTATGTACTCAATT+AGG - Chr3:95374288-95374307 MsG0380017367.01.T01:five_prime_UTR 40.0%
GGTTGAATTGCGGAAAGAAA+TGG - Chr3:95372817-95372836 MsG0380017367.01.T01:intron 40.0%
TCATTCATTAATGGCGACGA+GGG + Chr3:95372080-95372099 None:intergenic 40.0%
TGCTGAAAATGTGAATTGGC+AGG - Chr3:95373710-95373729 MsG0380017367.01.T01:intron 40.0%
TGTCGGTCAAAATTCAAGAG+TGG + Chr3:95373551-95373570 None:intergenic 40.0%
TTCATTCATTAATGGCGACG+AGG + Chr3:95372081-95372100 None:intergenic 40.0%
TTTACCTCAACTCTTTCCTG+TGG + Chr3:95373169-95373188 None:intergenic 40.0%
! CACTGCCGGTAACAATATTT+TGG + Chr3:95374103-95374122 None:intergenic 40.0%
!! AGAATCCGCCGATTCTTATT+CGG + Chr3:95372038-95372057 None:intergenic 40.0%
!! GTTCGCCTTTCATGTTTTGA+AGG + Chr3:95372850-95372869 None:intergenic 40.0%
!! TCTTGAATTTTGACCGACAC+AGG - Chr3:95373552-95373571 MsG0380017367.01.T01:intron 40.0%
AACCACAAATACTGCACTGC+CGG + Chr3:95374117-95374136 None:intergenic 45.0%
AACCTTCTCTCCAGTTCAAC+TGG + Chr3:95373837-95373856 None:intergenic 45.0%
AATGTGAATTGGCAGGTTGC+TGG - Chr3:95373717-95373736 MsG0380017367.01.T01:intron 45.0%
ACTGAACTTAAAGCAGCCTC+AGG + Chr3:95374035-95374054 None:intergenic 45.0%
AGAAGGAGACAAGGAGTTCT+TGG - Chr3:95373940-95373959 MsG0380017367.01.T01:intron 45.0%
AGCTCAATGAGAAGGAGACA+AGG - Chr3:95373931-95373950 MsG0380017367.01.T01:intron 45.0%
CACGCAAAAGCTCAATGAGA+AGG - Chr3:95373923-95373942 MsG0380017367.01.T01:intron 45.0%
CTTTGGCAGAACGAGAAGAA+TGG + Chr3:95371968-95371987 None:intergenic 45.0%
GACACGTAAACGACGGTTAT+GGG + Chr3:95371859-95371878 None:intergenic 45.0%
GATGTCTGGAAGCTACTAGT+AGG - Chr3:95374318-95374337 MsG0380017367.01.T01:five_prime_UTR 45.0%
GTTCATCCCCTATCAAACTC+AGG + Chr3:95373229-95373248 None:intergenic 45.0%
GTTCTACAGGGCAGTTAGAT+TGG - Chr3:95372718-95372737 MsG0380017367.01.T01:intron 45.0%
TACTTTCCCACTTGATCCTG+AGG - Chr3:95374016-95374035 MsG0380017367.01.T01:intron 45.0%
TCAAGAACGGATAACAGAGC+TGG - Chr3:95373881-95373900 MsG0380017367.01.T01:intron 45.0%
TCTGCCAAAGCTATTCACCT+CGG - Chr3:95371978-95371997 MsG0380017367.01.T01:three_prime_UTR 45.0%
TTCGTCGGCGAGAAGAATAT+CGG + Chr3:95371883-95371902 None:intergenic 45.0%
TTCTCTCCAGTTCAACTGGA+GGG + Chr3:95373833-95373852 None:intergenic 45.0%
TTTAAGCTAGGAGTTGGGTG+TGG - Chr3:95372751-95372770 MsG0380017367.01.T01:intron 45.0%
! CTTCTCATTGAGCTTTTGCG+TGG + Chr3:95373925-95373944 None:intergenic 45.0%
AAAGCAGCCTCAGGATCAAG+TGG + Chr3:95374026-95374045 None:intergenic 50.0%
AAGCAGCCTCAGGATCAAGT+GGG + Chr3:95374025-95374044 None:intergenic 50.0%
AATGGTGCGGGTGTTCTACA+GGG - Chr3:95372706-95372725 MsG0380017367.01.T01:intron 50.0%
ACGTAAACGACGGTTATGGG+TGG + Chr3:95371856-95371875 None:intergenic 50.0%
CATTGAAGAGCCAACGGAGA+CGG + Chr3:95371919-95371938 None:intergenic 50.0%
CGACACGTAAACGACGGTTA+TGG + Chr3:95371860-95371879 None:intergenic 50.0%
CTCCAGTTGAACTGGAGAGA+AGG - Chr3:95373832-95373851 MsG0380017367.01.T01:intron 50.0%
CTTCTCTCCAGTTCAACTGG+AGG + Chr3:95373834-95373853 None:intergenic 50.0%
GAACGAGAAGAATGGTGTGG+TGG + Chr3:95371960-95371979 None:intergenic 50.0%
GATGGCCGAATAAGAATCGG+CGG - Chr3:95372030-95372049 MsG0380017367.01.T01:three_prime_UTR 50.0%
GCAACGGTTGCAGCTGTATT+TGG - Chr3:95373117-95373136 MsG0380017367.01.T01:CDS 50.0%
GCAGAACGAGAAGAATGGTG+TGG + Chr3:95371963-95371982 None:intergenic 50.0%
GCCTTCCATTGAAGAGCCAA+CGG + Chr3:95371925-95371944 None:intergenic 50.0%
GTTATGGGTGGAGTGGGAAT+CGG + Chr3:95371844-95371863 None:intergenic 50.0%
TAATGGTGCGGGTGTTCTAC+AGG - Chr3:95372705-95372724 MsG0380017367.01.T01:intron 50.0%
TACCGGCAGTGCAGTATTTG+TGG - Chr3:95374112-95374131 MsG0380017367.01.T01:intron 50.0%
TATCGGCGACACGTAAACGA+CGG + Chr3:95371866-95371885 None:intergenic 50.0%
TGCATTTGAAGACGCACCAC+AGG - Chr3:95373150-95373169 MsG0380017367.01.T01:CDS 50.0%
TTATGGGTGGAGTGGGAATC+GGG + Chr3:95371843-95371862 None:intergenic 50.0%
!! AATGCCCTTTCGGTGTCAAG+AGG - Chr3:95373504-95373523 MsG0380017367.01.T01:five_prime_UTR 50.0%
!! GGAGGGCACTTCTACAAAAG+TGG - Chr3:95373525-95373544 MsG0380017367.01.T01:five_prime_UTR 50.0%
!! TCCGTTGGCTCTTCAATGGA+AGG - Chr3:95371921-95371940 MsG0380017367.01.T01:three_prime_UTR 50.0%
AACGACGGTTATGGGTGGAG+TGG + Chr3:95371851-95371870 None:intergenic 55.0%
ACGACGGTTATGGGTGGAGT+GGG + Chr3:95371850-95371869 None:intergenic 55.0%
CCCTCCTCTTGACACCGAAA+GGG + Chr3:95373511-95373530 None:intergenic 55.0%
CGCACCACAGGAAAGAGTTG+AGG - Chr3:95373162-95373181 MsG0380017367.01.T01:CDS 55.0%
GCCAAAGCTATTCACCTCGG+CGG - Chr3:95371981-95372000 MsG0380017367.01.T01:three_prime_UTR 55.0%
TATGGGTGGAGTGGGAATCG+GGG + Chr3:95371842-95371861 None:intergenic 55.0%
TGGAGTCCCTCCAGTTGAAC+TGG - Chr3:95373824-95373843 MsG0380017367.01.T01:intron 55.0%
TTGGTTGCTGGCGGCTATGA+TGG - Chr3:95372012-95372031 MsG0380017367.01.T01:three_prime_UTR 55.0%
! ATCGGCGGATTCTCAAACGC+CGG - Chr3:95372045-95372064 MsG0380017367.01.T01:three_prime_UTR 55.0%
! GCTTGTTGCTTGGTTGCTGG+CGG - Chr3:95372003-95372022 MsG0380017367.01.T01:three_prime_UTR 55.0%
!! CCCTTTCGGTGTCAAGAGGA+GGG - Chr3:95373508-95373527 MsG0380017367.01.T01:five_prime_UTR 55.0%
!! CGTCTCCGTTGGCTCTTCAA+TGG - Chr3:95371917-95371936 MsG0380017367.01.T01:three_prime_UTR 55.0%
AACCAAGCAACAAGCCGCCG+AGG + Chr3:95371998-95372017 None:intergenic 60.0%
GCCCTCCTCTTGACACCGAA+AGG + Chr3:95373512-95373531 None:intergenic 60.0%
GCCGCCGAGGTGAATAGCTT+TGG + Chr3:95371985-95372004 None:intergenic 60.0%
GCGACGAGGGAATCTTCTCC+CGG + Chr3:95372067-95372086 None:intergenic 60.0%
GTGGAGTGGGAATCGGGGAA+GGG + Chr3:95371837-95371856 None:intergenic 60.0%
TGAAGAGCCAACGGAGACGG+CGG + Chr3:95371916-95371935 None:intergenic 60.0%
! TCGGCGGATTCTCAAACGCC+GGG - Chr3:95372046-95372065 MsG0380017367.01.T01:three_prime_UTR 60.0%
!! GCCCTTTCGGTGTCAAGAGG+AGG - Chr3:95373507-95373526 MsG0380017367.01.T01:five_prime_UTR 60.0%
!! GCGGCTTGTTGCTTGGTTGC+TGG - Chr3:95372000-95372019 MsG0380017367.01.T01:three_prime_UTR 60.0%
GAGTGGGAATCGGGGAAGGG+AGG + Chr3:95371834-95371853 None:intergenic 65.0%
GGTGGAGTGGGAATCGGGGA+AGG + Chr3:95371838-95371857 None:intergenic 65.0%
!! CACCTCGGCGGCTTGTTGCT+TGG - Chr3:95371993-95372012 MsG0380017367.01.T01:three_prime_UTR 65.0%
AGAGCCAACGGAGACGGCGG+CGG + Chr3:95371913-95371932 None:intergenic 70.0%
! GCCAACGGAGACGGCGGCGG+CGG + Chr3:95371910-95371929 None:intergenic 80.0%
! GGCGGCGGCGGCGTCTTCGT+CGG + Chr3:95371898-95371917 None:intergenic 80.0%
! GCCGCCGCCGCCGTCTCCGT+TGG - Chr3:95371906-95371925 MsG0380017367.01.T01:three_prime_UTR 85.0%
Chromosome Type Strat End Strand Name
Chr3 gene 95371834 95374441 95371834 ID=MsG0380017367.01;Name=MsG0380017367.01
Chr3 mRNA 95371834 95374441 95371834 ID=MsG0380017367.01.T01;Parent=MsG0380017367.01;Name=MsG0380017367.01.T01;_AED=0.19;_eAED=0.19;_QI=380|1|1|1|0.5|0.33|3|377|233
Chr3 exon 95371834 95372543 95371834 ID=MsG0380017367.01.T01:exon:1678;Parent=MsG0380017367.01.T01
Chr3 exon 95373092 95373548 95373092 ID=MsG0380017367.01.T01:exon:1677;Parent=MsG0380017367.01.T01
Chr3 exon 95374150 95374441 95374150 ID=MsG0380017367.01.T01:exon:1676;Parent=MsG0380017367.01.T01
Chr3 five_prime_UTR 95374150 95374441 95374150 ID=MsG0380017367.01.T01:five_prime_utr;Parent=MsG0380017367.01.T01
Chr3 five_prime_UTR 95373461 95373548 95373461 ID=MsG0380017367.01.T01:five_prime_utr;Parent=MsG0380017367.01.T01
Chr3 CDS 95373092 95373460 95373092 ID=MsG0380017367.01.T01:cds;Parent=MsG0380017367.01.T01
Chr3 CDS 95372211 95372543 95372211 ID=MsG0380017367.01.T01:cds;Parent=MsG0380017367.01.T01
Chr3 three_prime_UTR 95371834 95372210 95371834 ID=MsG0380017367.01.T01:three_prime_utr;Parent=MsG0380017367.01.T01
Gene Sequence

>MsG0380017367.01.T01

ATGGTTGAATTGCGGAAAGAAATGGAAGTAATCCTTCAAAACATGAAAGGCGAACTTCAAAATAAAGATGTTCTTGTTAAGTCGTTGAAACAATGTGATGATGCTCTTGCCTTTTCCATCACTGATATTCAAGAAGTTTCATGCTCTAGTAGTCACCCTTCAATTAATTCGCAAAAGCCGTATGTTCAGTTAGAGTTGAAAAGCAACACGGGTTGTGATCGTTTTCTAGAGTATGATATAAGTGAACAAGATGAATGTGCCGAAGAAATTAACGAGCTTCAGGCAGAATTTGAATATGAGTTGCAACGGTTGCAGCTGTATTTGGATGCAGAAGATGCATTTGAAGACGCACCACAGGAAAGAGTTGAGGTTGCTGGTAACGACTCCAGTTCAAAAAGTGAGAGTTCAAGTTTTGGCGAAATAATAATGGAGCCTCAAGAAGCAAGTTATGATATGTCATTTGGAGTCCCTCCAGTTGAACTGGAGAGAAGGTTACATGAACTACTTGAAACTAGACTTCAAGAACGGATAACAGAGCTGGAGTCTGCTTTAGAATATGCCACGCAAAAGCTCAATGAGAAGGAGACAAGGAGTTCTTGGTGTGAAGACTCTGCAATACATATCCCGTATCATGTTCCAGAAACATCTCGATTTACTTTCCCACTTGATCCTGAGGCTGCTTTAAGTTCAGTCAAGTTGTAG
Protein sequence

>MsG0380017367.01.T01

MVELRKEMEVILQNMKGELQNKDVLVKSLKQCDDALAFSITDIQEVSCSSSHPSINSQKPYVQLELKSNTGCDRFLEYDISEQDECAEEINELQAEFEYELQRLQLYLDAEDAFEDAPQERVEVAGNDSSSKSESSSFGEIIMEPQEASYDMSFGVPPVELERRLHELLETRLQERITELESALEYATQKLNEKETRSSWCEDSAIHIPYHVPETSRFTFPLDPEAALSSVKL*