AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180002426.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180002426.01.T01 MTR_1g050462 87.113 194 10 1 12 205 1 179 6.19e-116 332
MsG0180002426.01.T01 MTR_1g050462 87.113 194 10 1 12 205 1 179 1.51e-115 332
MsG0180002426.01.T01 MTR_1g050462 87.113 194 10 1 12 205 1 179 4.53e-115 334
MsG0180002426.01.T01 MTR_1g050462 87.113 194 10 1 12 205 1 179 4.55e-115 334
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180002426.01.T01 AT3G56160 48.299 147 61 1 62 208 47 178 3.67e-38 134
MsG0180002426.01.T01 AT3G56160 49.306 144 58 1 62 205 47 175 6.33e-38 134
MsG0180002426.01.T01 AT3G56160 49.306 144 58 1 62 205 47 175 1.37e-37 135
MsG0180002426.01.T01 AT3G56160 49.306 144 56 2 64 205 74 202 4.10e-37 132
MsG0180002426.01.T01 AT3G56160 49.306 144 56 2 64 205 74 202 9.68e-37 133

Find 74 sgRNAs with CRISPR-Local

Find 226 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAATATCATGTATCCAAAAT+TGG 0.149667 1:-38289903 MsG0180002426.01.T01:CDS
AATTCCAAACGGCCCAATTT+TGG 0.174825 1:+38289890 None:intergenic
GCATGGCCTGTTGGACTCTT+TGG 0.175566 1:-38289705 MsG0180002426.01.T01:CDS
GCCCCTAGCAAAGCTCAAAA+TGG 0.283477 1:+38290441 None:intergenic
GTGGCGTGAGGATGAGTAAA+TGG 0.299448 1:+38290653 None:intergenic
CAACCCCAAGAATTTATTAC+AGG 0.300555 1:-38287986 MsG0180002426.01.T01:CDS
CGGGAAGAAGGGGAAAATAG+AGG 0.303301 1:+38290604 None:intergenic
CTAAACCTGTAATAAATTCT+TGG 0.309750 1:+38287981 None:intergenic
CATGGCCTGTTGGACTCTTT+GGG 0.310381 1:-38289704 MsG0180002426.01.T01:CDS
TGCTTAGAGTAGAATGTAAA+TGG 0.323039 1:+38287958 None:intergenic
TAAACCTGTAATAAATTCTT+GGG 0.340341 1:+38287982 None:intergenic
ATGGCGAGGGCGGGAAGAAG+GGG 0.347970 1:+38290594 None:intergenic
CCATGACCTCCGCCGAGTGC+GGG 0.351776 1:+38290689 None:intergenic
GTATCCAAAATTGGGCCGTT+TGG 0.365828 1:-38289894 MsG0180002426.01.T01:CDS
GCGTAGAGTGAGGGATTTAA+TGG 0.367506 1:+38290561 None:intergenic
CTGATTTCTGCGGTGACGTT+AGG 0.368875 1:-38289960 MsG0180002426.01.T01:CDS
GAAAATAGAGGGGTTGGACG+AGG 0.389124 1:+38290616 None:intergenic
GGATGGCGAGGGCGGGAAGA+AGG 0.414231 1:+38290592 None:intergenic
AATATCATGTATCCAAAATT+GGG 0.421936 1:-38289902 MsG0180002426.01.T01:CDS
AATATTACCCTAGAAAAGTA+TGG 0.424514 1:+38288022 None:intergenic
GTCTGAAGGGAGTGGGGCGG+TGG 0.425306 1:+38290539 None:intergenic
GATGGCGAGGGCGGGAAGAA+GGG 0.436446 1:+38290593 None:intergenic
CCCGCACTCGGCGGAGGTCA+TGG 0.446018 1:-38290689 MsG0180002426.01.T01:CDS
CAGTTGGATGGTAGTGGTAG+TGG 0.462050 1:-38290499 MsG0180002426.01.T01:CDS
GCCATGACCTCCGCCGAGTG+CGG 0.466368 1:+38290688 None:intergenic
ACTAGCCCAAAGAGTCCAAC+AGG 0.477856 1:+38289699 None:intergenic
GGATTAACATGTCCTAGTCT+TGG 0.479373 1:-38289939 MsG0180002426.01.T01:CDS
CTGTAATAAATTCTTGGGGT+TGG 0.480588 1:+38287987 None:intergenic
GCTGTAGAAGCATGGCCTGT+TGG 0.481048 1:-38289714 MsG0180002426.01.T01:CDS
GGAGTGAGGATGGCGAGGGC+GGG 0.485143 1:+38290585 None:intergenic
GGGAAGAAGGGGAAAATAGA+GGG 0.485919 1:+38290605 None:intergenic
AGGGGTTGGACGAGGGAATG+AGG 0.487237 1:+38290624 None:intergenic
CACTCGGCGGAGGTCATGGC+GGG 0.494199 1:-38290685 MsG0180002426.01.T01:CDS
GAAGGGGAAAATAGAGGGGT+TGG 0.496201 1:+38290610 None:intergenic
CCCCTAGCAAAGCTCAAAAT+GGG 0.502048 1:+38290442 None:intergenic
TGGGGCGGTGGCGTAGAGTG+AGG 0.502175 1:+38290551 None:intergenic
AAGAGTCAGAAGGATTGAGC+TGG 0.505321 1:-38290471 MsG0180002426.01.T01:CDS
CGGAGTGAGGATGGCGAGGG+CGG 0.505348 1:+38290584 None:intergenic
CATGACCTCCGCCGAGTGCG+GGG 0.517517 1:+38290690 None:intergenic
AAAATAGAGGGGTTGGACGA+GGG 0.518366 1:+38290617 None:intergenic
GGGGCGGTGGCGTAGAGTGA+GGG 0.542160 1:+38290552 None:intergenic
TTCAATCAGTTGGATGGTAG+TGG 0.543346 1:-38290505 MsG0180002426.01.T01:CDS
GTGTTGCGAAGCGAAGAAAT+TGG 0.543607 1:-38289741 MsG0180002426.01.T01:CDS
GAATTGAGCACATGGTCTGA+AGG 0.544454 1:+38290525 None:intergenic
GCACATGGTCTGAAGGGAGT+GGG 0.546886 1:+38290532 None:intergenic
GGAAGAAGGGGAAAATAGAG+GGG 0.548611 1:+38290606 None:intergenic
ATTTAATGGCGGAGTGAGGA+TGG 0.549666 1:+38290575 None:intergenic
ATGTGCTCAATTCAATCAGT+TGG 0.553034 1:-38290515 MsG0180002426.01.T01:CDS
AGCACATGGTCTGAAGGGAG+TGG 0.558159 1:+38290531 None:intergenic
CACATGGTCTGAAGGGAGTG+GGG 0.559219 1:+38290533 None:intergenic
AGGGATTTAATGGCGGAGTG+AGG 0.569386 1:+38290571 None:intergenic
AATTGAGCACATGGTCTGAA+GGG 0.582552 1:+38290526 None:intergenic
AGGGGCAATATCTTACCTCT+AGG 0.584110 1:-38290424 MsG0180002426.01.T01:CDS
ATGGCGGAGTGAGGATGGCG+AGG 0.585893 1:+38290580 None:intergenic
TCAACAGCGCAACCAAGACT+AGG 0.588891 1:+38289927 None:intergenic
AAAAGCATTGATATAGAGAG+AGG 0.589948 1:+38290399 None:intergenic
ATGGTCTGAAGGGAGTGGGG+CGG 0.591354 1:+38290536 None:intergenic
ATGACCTCCGCCGAGTGCGG+GGG 0.593723 1:+38290691 None:intergenic
TGGCGTGAGGATGAGTAAAT+GGG 0.597198 1:+38290654 None:intergenic
TGGCGGAGTGAGGATGGCGA+GGG 0.599047 1:+38290581 None:intergenic
GAGGATGAGTAAATGGGCGG+TGG 0.603068 1:+38290660 None:intergenic
GCTCAATTCAATCAGTTGGA+TGG 0.615812 1:-38290511 MsG0180002426.01.T01:CDS
AAACCTGTAATAAATTCTTG+GGG 0.616241 1:+38287983 None:intergenic
AGAGTCAGAAGGATTGAGCT+GGG 0.621798 1:-38290470 MsG0180002426.01.T01:CDS
ATTTGTAGCTCTGATTTCTG+CGG 0.627818 1:-38289970 MsG0180002426.01.T01:CDS
TTGGTGCAGCTGTAGAAGCA+TGG 0.632248 1:-38289722 MsG0180002426.01.T01:CDS
AACTGATTGAATTGAGCACA+TGG 0.632805 1:+38290517 None:intergenic
AGTGGTAGCAAAGAGTCAGA+AGG 0.633086 1:-38290481 MsG0180002426.01.T01:CDS
GCACTCGGCGGAGGTCATGG+CGG 0.651134 1:-38290686 MsG0180002426.01.T01:CDS
ATGAGGATGAATGTGGCGTG+AGG 0.678200 1:+38290641 None:intergenic
TAGAGTGAGGGATTTAATGG+CGG 0.692309 1:+38290564 None:intergenic
CGTGAGGATGAGTAAATGGG+CGG 0.692761 1:+38290657 None:intergenic
CGAGGGAATGAGGATGAATG+TGG 0.697030 1:+38290634 None:intergenic
ATATAGAGAGAGGCACCTAG+AGG 0.711742 1:+38290409 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAGTAAAGAATAAAACATA+CGG + Chr1:38289986-38290005 None:intergenic 15.0%
!! AAATATATTCGAACAAAATA+GGG + Chr1:38288320-38288339 None:intergenic 15.0%
!! AAATTTATGATCAGATTAAT+GGG - Chr1:38289121-38289140 MsG0180002426.01.T01:intron 15.0%
!! CATATTTATTTAATTCAAGA+TGG + Chr1:38289548-38289567 None:intergenic 15.0%
!! AAACACATATTCTATGAAAT+AGG - Chr1:38290152-38290171 MsG0180002426.01.T01:intron 20.0%
!! AAATATCATGTATCCAAAAT+TGG - Chr1:38288761-38288780 MsG0180002426.01.T01:intron 20.0%
!! AACATACGGTATATATAATT+TGG + Chr1:38289972-38289991 None:intergenic 20.0%
!! AATATCATGTATCCAAAATT+GGG - Chr1:38288762-38288781 MsG0180002426.01.T01:intron 20.0%
!! ACAAGAATAAATAAACAACA+TGG - Chr1:38290215-38290234 MsG0180002426.01.T01:intron 20.0%
!! ACATACGGTATATATAATTT+GGG + Chr1:38289971-38289990 None:intergenic 20.0%
!! ATAATATTAAGCAATGAAAC+AGG + Chr1:38289342-38289361 None:intergenic 20.0%
!! CAAAAAAATCATACCAAATT+AGG + Chr1:38288540-38288559 None:intergenic 20.0%
!! GAAATATATTCGAACAAAAT+AGG + Chr1:38288321-38288340 None:intergenic 20.0%
!! GAAATTTATGATCAGATTAA+TGG - Chr1:38289120-38289139 MsG0180002426.01.T01:intron 20.0%
!! TAAACCTGTAATAAATTCTT+GGG + Chr1:38290685-38290704 None:intergenic 20.0%
!! TTCATTTGATTATGTTATGA+GGG - Chr1:38288635-38288654 MsG0180002426.01.T01:intron 20.0%
!! TTTATTTAATTCAAGATGGA+AGG + Chr1:38289544-38289563 None:intergenic 20.0%
!!! TGTTTTATTCTTTACTTTTG+TGG - Chr1:38289988-38290007 MsG0180002426.01.T01:intron 20.0%
!!! TTTCATAGAATATGTGTTTT+AGG + Chr1:38290151-38290170 None:intergenic 20.0%
!!! TTTTTTTTATCTAGTGTAGT+AGG - Chr1:38289889-38289908 MsG0180002426.01.T01:CDS 20.0%
! AAACATTGCAAAATCAGATT+TGG - Chr1:38289492-38289511 MsG0180002426.01.T01:intron 25.0%
! AAACCTGTAATAAATTCTTG+GGG + Chr1:38290684-38290703 None:intergenic 25.0%
! AAGATTCTTATTACGAACTT+TGG - Chr1:38290380-38290399 MsG0180002426.01.T01:intron 25.0%
! AATATTACCCTAGAAAAGTA+TGG + Chr1:38290645-38290664 None:intergenic 25.0%
! AATGAGTAAAAGATCCAATT+TGG + Chr1:38288600-38288619 None:intergenic 25.0%
! AGATTCTTATTACGAACTTT+GGG - Chr1:38290381-38290400 MsG0180002426.01.T01:intron 25.0%
! ATCGATATTTGATAGAACAA+TGG + Chr1:38290485-38290504 None:intergenic 25.0%
! CATACGGTATATATAATTTG+GGG + Chr1:38289970-38289989 None:intergenic 25.0%
! CTAAACCTGTAATAAATTCT+TGG + Chr1:38290686-38290705 None:intergenic 25.0%
! CTAAGTTAACAAAATTGAAG+CGG + Chr1:38289216-38289235 None:intergenic 25.0%
! CTTCATTTGATTATGTTATG+AGG - Chr1:38288634-38288653 MsG0180002426.01.T01:intron 25.0%
! GAGATAACAAAAATTCCAAA+CGG + Chr1:38288788-38288807 None:intergenic 25.0%
! TAAGTTAACAAAATTGAAGC+GGG + Chr1:38289215-38289234 None:intergenic 25.0%
! TCTATGAAATAGGAACATAA+GGG - Chr1:38290162-38290181 MsG0180002426.01.T01:intron 25.0%
! TTCTATGAAATAGGAACATA+AGG - Chr1:38290161-38290180 MsG0180002426.01.T01:intron 25.0%
!! GCTTTAAGCTTTAATATTCA+CGG + Chr1:38289736-38289755 None:intergenic 25.0%
!! TATTATGGACCTCTTTTTAA+AGG - Chr1:38289150-38289169 MsG0180002426.01.T01:intron 25.0%
!! TTTGTTATCTCAGGTTAATT+TGG - Chr1:38288797-38288816 MsG0180002426.01.T01:intron 25.0%
!! TTTTTGTCAATGTCTAAGTT+AGG - Chr1:38288554-38288573 MsG0180002426.01.T01:intron 25.0%
!!! AATTTGTTATGGAAGTATGA+GGG - Chr1:38288431-38288450 MsG0180002426.01.T01:intron 25.0%
!!! AGATGGAAGTTTTAAAAAGA+AGG + Chr1:38290407-38290426 None:intergenic 25.0%
!!! GTTTTGATTTCATGACAATT+GGG - Chr1:38288849-38288868 MsG0180002426.01.T01:intron 25.0%
!!! TAATTTGTTATGGAAGTATG+AGG - Chr1:38288430-38288449 MsG0180002426.01.T01:intron 25.0%
!!! TGATCAATGGTTTTAAGATT+TGG - Chr1:38290446-38290465 MsG0180002426.01.T01:CDS 25.0%
!!! TGTTTTGATTTCATGACAAT+TGG - Chr1:38288848-38288867 MsG0180002426.01.T01:intron 25.0%
!!! TTTGGAATTTTTGTTATCTC+AGG - Chr1:38288788-38288807 MsG0180002426.01.T01:intron 25.0%
!!! TTTTTAAAACTTCCATCTCT+TGG - Chr1:38290409-38290428 MsG0180002426.01.T01:CDS 25.0%
AAAAAGAGGTCCATAATAGA+GGG + Chr1:38289148-38289167 None:intergenic 30.0%
AAAGCTTGAATCTCTAACTT+AGG - Chr1:38289751-38289770 MsG0180002426.01.T01:intron 30.0%
AAGTATGAGGGAATTATTTG+GGG - Chr1:38288443-38288462 MsG0180002426.01.T01:intron 30.0%
AATTAAAATGTGCATGCGTT+AGG - Chr1:38289776-38289795 MsG0180002426.01.T01:intron 30.0%
ACAAATAGATGCAAAAGGTT+AGG + Chr1:38288825-38288844 None:intergenic 30.0%
AGTGAATCTCAATCCTAATT+TGG - Chr1:38288524-38288543 MsG0180002426.01.T01:intron 30.0%
ATCAAAATCTGAAAAGTGGT+TGG + Chr1:38289317-38289336 None:intergenic 30.0%
ATTAAAATGTGCATGCGTTA+GGG - Chr1:38289777-38289796 MsG0180002426.01.T01:intron 30.0%
ATTGGGATTCAATGACTTTA+AGG - Chr1:38288466-38288485 MsG0180002426.01.T01:intron 30.0%
ATTTCTTGTCAGAGACAATT+GGG + Chr1:38288356-38288375 None:intergenic 30.0%
CAACAACAAATAGATGCAAA+AGG + Chr1:38288830-38288849 None:intergenic 30.0%
CTATGAAATAGGAACATAAG+GGG - Chr1:38290163-38290182 MsG0180002426.01.T01:intron 30.0%
GAAAATGTCAGAGACTAATT+TGG + Chr1:38288383-38288402 None:intergenic 30.0%
GAAATCAGGTTATCAAAATC+TGG + Chr1:38289466-38289485 None:intergenic 30.0%
GAAGTATGAGGGAATTATTT+GGG - Chr1:38288442-38288461 MsG0180002426.01.T01:intron 30.0%
GATAGAACAATGGTTTAGAT+AGG + Chr1:38290475-38290494 None:intergenic 30.0%
GGTTATCAAAATCTGAAAAG+TGG + Chr1:38289321-38289340 None:intergenic 30.0%
TAAAAAGAGGTCCATAATAG+AGG + Chr1:38289149-38289168 None:intergenic 30.0%
TAACTGATACAAGACATCTT+CGG + Chr1:38289380-38289399 None:intergenic 30.0%
TATTTCTTGTCAGAGACAAT+TGG + Chr1:38288357-38288376 None:intergenic 30.0%
TTCACATGACTATTGATCAA+TGG - Chr1:38290433-38290452 MsG0180002426.01.T01:CDS 30.0%
! ACTAAGAACAAATTAGTCTG+CGG - Chr1:38288405-38288424 MsG0180002426.01.T01:intron 30.0%
! GGTGAATATTCTGATAGTTT+TGG + Chr1:38290295-38290314 None:intergenic 30.0%
! TCTTACACCATACTTTTCTA+GGG - Chr1:38290635-38290654 MsG0180002426.01.T01:CDS 30.0%
! TGCTCTTTTGTTCTTTTTGT+AGG - Chr1:38290599-38290618 MsG0180002426.01.T01:CDS 30.0%
! TTCTTACACCATACTTTTCT+AGG - Chr1:38290634-38290653 MsG0180002426.01.T01:CDS 30.0%
!! AAAAGCATTGATATAGAGAG+AGG + Chr1:38288268-38288287 None:intergenic 30.0%
!! GGGGTGATTTGTTTATATTA+CGG - Chr1:38290182-38290201 MsG0180002426.01.T01:intron 30.0%
!!! CAATGTTTTTAGCAGAAATC+AGG + Chr1:38289480-38289499 None:intergenic 30.0%
!!! GTTTTCATCTTGTTTTGACA+TGG + Chr1:38289587-38289606 None:intergenic 30.0%
!!! TGTTTTGACATGGTTGATTA+GGG + Chr1:38289577-38289596 None:intergenic 30.0%
!!! TTGTTTTGACATGGTTGATT+AGG + Chr1:38289578-38289597 None:intergenic 30.0%
AACTGATTGAATTGAGCACA+TGG + Chr1:38288150-38288169 None:intergenic 35.0%
AAGTCATACATGCTGAAAGT+AGG + Chr1:38290359-38290378 None:intergenic 35.0%
AATATGCACCCTTTGCAAAA+AGG + Chr1:38289940-38289959 None:intergenic 35.0%
ACTGCATGGTTTATCTTGTA+GGG - Chr1:38288897-38288916 MsG0180002426.01.T01:intron 35.0%
AGATTCACTGACATTAGAGT+GGG + Chr1:38288513-38288532 None:intergenic 35.0%
AGTCATACATGCTGAAAGTA+GGG + Chr1:38290358-38290377 None:intergenic 35.0%
ATGTGCTCAATTCAATCAGT+TGG - Chr1:38288149-38288168 MsG0180002426.01.T01:intron 35.0%
ATTTATAGACCGCTTCACTA+CGG - Chr1:38289009-38289028 MsG0180002426.01.T01:intron 35.0%
CAACCCCAAGAATTTATTAC+AGG - Chr1:38290678-38290697 MsG0180002426.01.T01:CDS 35.0%
CTGTAATAAATTCTTGGGGT+TGG + Chr1:38290680-38290699 None:intergenic 35.0%
GATAATTGTGAGGACCAAAT+TGG - Chr1:38288583-38288602 MsG0180002426.01.T01:intron 35.0%
GGAAAAGGCAAAGTAATGAA+TGG - Chr1:38289637-38289656 MsG0180002426.01.T01:intron 35.0%
GTTCATGTATCATGTGTACT+GGG + Chr1:38290316-38290335 None:intergenic 35.0%
TACTGCATGGTTTATCTTGT+AGG - Chr1:38288896-38288915 MsG0180002426.01.T01:intron 35.0%
TATGAGGGATAACTTAACAG+TGG - Chr1:38288650-38288669 MsG0180002426.01.T01:intron 35.0%
TTGGACTTTCGTTGTTTAAC+TGG - Chr1:38289077-38289096 MsG0180002426.01.T01:intron 35.0%
! ATTAATGGGTCCCTCTATTA+TGG - Chr1:38289135-38289154 MsG0180002426.01.T01:intron 35.0%
! CTACTAAGCTTTATCATGCT+AGG - Chr1:38290086-38290105 MsG0180002426.01.T01:intron 35.0%
! GGAAGTATGAGGGAATTATT+TGG - Chr1:38288441-38288460 MsG0180002426.01.T01:intron 35.0%
! GTGTAGTAGGTTGAACTAAA+AGG - Chr1:38289902-38289921 MsG0180002426.01.T01:CDS 35.0%
! TAAGCTTTATCATGCTAGGT+GGG - Chr1:38290090-38290109 MsG0180002426.01.T01:intron 35.0%
! TTTGCAAAGGGTGCATATTA+GGG - Chr1:38289941-38289960 MsG0180002426.01.T01:CDS 35.0%
!! ATCAAAATCTGGAAAGTGCT+TGG + Chr1:38289455-38289474 None:intergenic 35.0%
!! ATTTGTAGCTCTGATTTCTG+CGG - Chr1:38288694-38288713 MsG0180002426.01.T01:intron 35.0%
!! TTTTGCAAAGGGTGCATATT+AGG - Chr1:38289940-38289959 MsG0180002426.01.T01:CDS 35.0%
AACAACGAAAGTCCAAACAC+AGG + Chr1:38289073-38289092 None:intergenic 40.0%
AATTGAGCACATGGTCTGAA+GGG + Chr1:38288141-38288160 None:intergenic 40.0%
AGATAGAGGCAGTTGTGAAA+GGG - Chr1:38289813-38289832 MsG0180002426.01.T01:intron 40.0%
AGGCAAAGTAATGAATGGAG+TGG - Chr1:38289642-38289661 MsG0180002426.01.T01:intron 40.0%
AGGTTGAACTAAAAGGTCCA+TGG - Chr1:38289909-38289928 MsG0180002426.01.T01:CDS 40.0%
AGTCATGTGAAACCAAGAGA+TGG + Chr1:38290424-38290443 None:intergenic 40.0%
CACACTACATGTAGAAGAAG+CGG + Chr1:38289263-38289282 None:intergenic 40.0%
CATGGTTTATCTTGTAGGGT+TGG - Chr1:38288901-38288920 MsG0180002426.01.T01:intron 40.0%
GAATTAAAGCCGTAGTGAAG+CGG + Chr1:38289021-38289040 None:intergenic 40.0%
GAGATTCACTGACATTAGAG+TGG + Chr1:38288514-38288533 None:intergenic 40.0%
GAGGGAATTATTTGGGGATT+GGG - Chr1:38288449-38288468 MsG0180002426.01.T01:intron 40.0%
GCTCAATTCAATCAGTTGGA+TGG - Chr1:38288153-38288172 MsG0180002426.01.T01:intron 40.0%
GGATTAACATGTCCTAGTCT+TGG - Chr1:38288725-38288744 MsG0180002426.01.T01:intron 40.0%
GGTGTCTAAGTGAATGTTCT+GGG - Chr1:38288870-38288889 MsG0180002426.01.T01:intron 40.0%
GGTTCATGTATCATGTGTAC+TGG + Chr1:38290317-38290336 None:intergenic 40.0%
GTTCACCTGTATGAAGCAAA+GGG - Chr1:38289838-38289857 MsG0180002426.01.T01:intron 40.0%
TAGAGCCAATTGTATTGGAG+AGG + Chr1:38289191-38289210 None:intergenic 40.0%
TAGAGTGAGGGATTTAATGG+CGG + Chr1:38288103-38288122 None:intergenic 40.0%
TGAGGGAATTATTTGGGGAT+TGG - Chr1:38288448-38288467 MsG0180002426.01.T01:intron 40.0%
TGGTCCTCACAATTATCTTG+CGG + Chr1:38288580-38288599 None:intergenic 40.0%
TGTTCACCTGTATGAAGCAA+AGG - Chr1:38289837-38289856 MsG0180002426.01.T01:intron 40.0%
TTCAATCAGTTGGATGGTAG+TGG - Chr1:38288159-38288178 MsG0180002426.01.T01:intron 40.0%
TTCACCTGTATGAAGCAAAG+GGG - Chr1:38289839-38289858 MsG0180002426.01.T01:intron 40.0%
TTGATTGATGTGCCTGTGTT+TGG - Chr1:38289058-38289077 MsG0180002426.01.T01:intron 40.0%
TTTCCAACTTGAAAGCTCGA+CGG + Chr1:38289622-38289641 None:intergenic 40.0%
TTTGCAAAAAGGTTCAGCCA+TGG + Chr1:38289929-38289948 None:intergenic 40.0%
! AACCCATTTTGAGCTTTGCT+AGG - Chr1:38288220-38288239 MsG0180002426.01.T01:intron 40.0%
! AATTCCAAACGGCCCAATTT+TGG + Chr1:38288777-38288796 None:intergenic 40.0%
! ACCCATTTTGAGCTTTGCTA+GGG - Chr1:38288221-38288240 MsG0180002426.01.T01:intron 40.0%
! ATGGCTGAACCTTTTTGCAA+AGG - Chr1:38289928-38289947 MsG0180002426.01.T01:CDS 40.0%
! CGCTTGGATCCTTTAAAAAG+AGG + Chr1:38289162-38289181 None:intergenic 40.0%
! CTAAGCTTTATCATGCTAGG+TGG - Chr1:38290089-38290108 MsG0180002426.01.T01:intron 40.0%
! GGGATTCAATGACTTTAAGG+CGG - Chr1:38288469-38288488 MsG0180002426.01.T01:intron 40.0%
! GTGGTGTTTGTGTTCTTTTG+AGG - Chr1:38288669-38288688 MsG0180002426.01.T01:intron 40.0%
! TGGCTGAACCTTTTTGCAAA+GGG - Chr1:38289929-38289948 MsG0180002426.01.T01:CDS 40.0%
! TTGCAAAGGGTGCATATTAG+GGG - Chr1:38289942-38289961 MsG0180002426.01.T01:CDS 40.0%
!! GGATTCAATGACTTTAAGGC+GGG - Chr1:38288470-38288489 MsG0180002426.01.T01:intron 40.0%
!! GTCTGCGGACTAATTTGTTA+TGG - Chr1:38288420-38288439 MsG0180002426.01.T01:intron 40.0%
!! TCGAGCTTTCAAGTTGGAAA+AGG - Chr1:38289622-38289641 MsG0180002426.01.T01:intron 40.0%
!! TTTTAAAGGATCCAAGCGTG+TGG - Chr1:38289164-38289183 MsG0180002426.01.T01:intron 40.0%
!!! TCTGATAGTTTTGGAGTGAG+AGG + Chr1:38290286-38290305 None:intergenic 40.0%
AAAATAGAGGGGTTGGACGA+GGG + Chr1:38288050-38288069 None:intergenic 45.0%
AAAATGTGCATGCGTTAGGG+TGG - Chr1:38289780-38289799 MsG0180002426.01.T01:intron 45.0%
AAGAGTCAGAAGGATTGAGC+TGG - Chr1:38288193-38288212 MsG0180002426.01.T01:intron 45.0%
ACTACATGTAGAAGAAGCGG+TGG + Chr1:38289260-38289279 None:intergenic 45.0%
AGAGTCAGAAGGATTGAGCT+GGG - Chr1:38288194-38288213 MsG0180002426.01.T01:intron 45.0%
AGGGGCAATATCTTACCTCT+AGG - Chr1:38288240-38288259 MsG0180002426.01.T01:intron 45.0%
AGTGGTAGCAAAGAGTCAGA+AGG - Chr1:38288183-38288202 MsG0180002426.01.T01:intron 45.0%
ATGTAGAAGAAGCGGTGGAA+AGG + Chr1:38289255-38289274 None:intergenic 45.0%
CCCCTAGCAAAGCTCAAAAT+GGG + Chr1:38288225-38288244 None:intergenic 45.0%
GAATATATTTCTCTCGCGCG+CGG - Chr1:38288330-38288349 MsG0180002426.01.T01:intron 45.0%
GAATTGAGCACATGGTCTGA+AGG + Chr1:38288142-38288161 None:intergenic 45.0%
GAGATAGAGGCAGTTGTGAA+AGG - Chr1:38289812-38289831 MsG0180002426.01.T01:intron 45.0%
GCGTAGAGTGAGGGATTTAA+TGG + Chr1:38288106-38288125 None:intergenic 45.0%
GGAAGAAGGGGAAAATAGAG+GGG + Chr1:38288061-38288080 None:intergenic 45.0%
GGGAAGAAGGGGAAAATAGA+GGG + Chr1:38288062-38288081 None:intergenic 45.0%
GGGAGTTGCATAAGAAAGTG+AGG + Chr1:38290338-38290357 None:intergenic 45.0%
GGGTGTCTAAGTGAATGTTC+TGG - Chr1:38288869-38288888 MsG0180002426.01.T01:intron 45.0%
GTATCCAAAATTGGGCCGTT+TGG - Chr1:38288770-38288789 MsG0180002426.01.T01:intron 45.0%
GTGGACCTCTCCAATACAAT+TGG - Chr1:38289183-38289202 MsG0180002426.01.T01:intron 45.0%
GTGTTGCGAAGCGAAGAAAT+TGG - Chr1:38288923-38288942 MsG0180002426.01.T01:intron 45.0%
TAGGCCGCAAGATAATTGTG+AGG - Chr1:38288573-38288592 MsG0180002426.01.T01:intron 45.0%
TGGCGTGAGGATGAGTAAAT+GGG + Chr1:38288013-38288032 None:intergenic 45.0%
TTCCAACTTGAAAGCTCGAC+GGG + Chr1:38289621-38289640 None:intergenic 45.0%
! ATGTTCTGGGTTCTACTGCA+TGG - Chr1:38288883-38288902 MsG0180002426.01.T01:intron 45.0%
! ATTTAATGGCGGAGTGAGGA+TGG + Chr1:38288092-38288111 None:intergenic 45.0%
! CCCATTTTGAGCTTTGCTAG+GGG - Chr1:38288222-38288241 MsG0180002426.01.T01:intron 45.0%
!! ATATAGAGAGAGGCACCTAG+AGG + Chr1:38288258-38288277 None:intergenic 45.0%
!! TCAAAAAAAAAAAAAAAAAA+AGG + Chr1:38289868-38289887 None:intergenic 5.0%
ACTAGCCCAAAGAGTCCAAC+AGG + Chr1:38288968-38288987 None:intergenic 50.0%
ATGAGGATGAATGTGGCGTG+AGG + Chr1:38288026-38288045 None:intergenic 50.0%
CATGGCCTGTTGGACTCTTT+GGG - Chr1:38288960-38288979 MsG0180002426.01.T01:intron 50.0%
CGAGGGAATGAGGATGAATG+TGG + Chr1:38288033-38288052 None:intergenic 50.0%
CGGGAAGAAGGGGAAAATAG+AGG + Chr1:38288063-38288082 None:intergenic 50.0%
CGTGAGGATGAGTAAATGGG+CGG + Chr1:38288010-38288029 None:intergenic 50.0%
CTGATTTCTGCGGTGACGTT+AGG - Chr1:38288704-38288723 MsG0180002426.01.T01:intron 50.0%
GAAAATAGAGGGGTTGGACG+AGG + Chr1:38288051-38288070 None:intergenic 50.0%
GAAGGGGAAAATAGAGGGGT+TGG + Chr1:38288057-38288076 None:intergenic 50.0%
GCCCCTAGCAAAGCTCAAAA+TGG + Chr1:38288226-38288245 None:intergenic 50.0%
GTGGCGTGAGGATGAGTAAA+TGG + Chr1:38288014-38288033 None:intergenic 50.0%
TCAACAGCGCAACCAAGACT+AGG + Chr1:38288740-38288759 None:intergenic 50.0%
TCCAACTTGAAAGCTCGACG+GGG + Chr1:38289620-38289639 None:intergenic 50.0%
TTGGTGCAGCTGTAGAAGCA+TGG - Chr1:38288942-38288961 MsG0180002426.01.T01:intron 50.0%
! AGGGATTTAATGGCGGAGTG+AGG + Chr1:38288096-38288115 None:intergenic 50.0%
! CGGGCTAGAGCCAATTGTAT+TGG + Chr1:38289196-38289215 None:intergenic 50.0%
!! CAGTTGGATGGTAGTGGTAG+TGG - Chr1:38288165-38288184 MsG0180002426.01.T01:intron 50.0%
AGCACATGGTCTGAAGGGAG+TGG + Chr1:38288136-38288155 None:intergenic 55.0%
ATGTGCATGCGTTAGGGTGG+TGG - Chr1:38289783-38289802 MsG0180002426.01.T01:intron 55.0%
ATTGGAGAGGTCCACACGCT+TGG + Chr1:38289178-38289197 None:intergenic 55.0%
CACATGGTCTGAAGGGAGTG+GGG + Chr1:38288134-38288153 None:intergenic 55.0%
GAGGATGAGTAAATGGGCGG+TGG + Chr1:38288007-38288026 None:intergenic 55.0%
GCACATGGTCTGAAGGGAGT+GGG + Chr1:38288135-38288154 None:intergenic 55.0%
GCATGGCCTGTTGGACTCTT+TGG - Chr1:38288959-38288978 MsG0180002426.01.T01:intron 55.0%
GTCGCCCCTTTGCTTCATAC+AGG + Chr1:38289846-38289865 None:intergenic 55.0%
! ACCCCGTCGAGCTTTCAAGT+TGG - Chr1:38289616-38289635 MsG0180002426.01.T01:intron 55.0%
! GCTGTAGAAGCATGGCCTGT+TGG - Chr1:38288950-38288969 MsG0180002426.01.T01:intron 55.0%
AGGGGTTGGACGAGGGAATG+AGG + Chr1:38288043-38288062 None:intergenic 60.0%
ATGGTCTGAAGGGAGTGGGG+CGG + Chr1:38288131-38288150 None:intergenic 60.0%
! ATGCGTTAGGGTGGTGGCGA+AGG - Chr1:38289789-38289808 MsG0180002426.01.T01:intron 60.0%
! GTGGTGGCGAAGGGAGATAG+AGG - Chr1:38289799-38289818 MsG0180002426.01.T01:intron 60.0%
! TGCGTTAGGGTGGTGGCGAA+GGG - Chr1:38289790-38289809 MsG0180002426.01.T01:intron 60.0%
ATGGCGAGGGCGGGAAGAAG+GGG + Chr1:38288073-38288092 None:intergenic 65.0%
CCTAGTTCAGCCCCCGCACT+CGG - Chr1:38287963-38287982 MsG0180002426.01.T01:CDS 65.0%
GATGGCGAGGGCGGGAAGAA+GGG + Chr1:38288074-38288093 None:intergenic 65.0%
TGGCGGAGTGAGGATGGCGA+GGG + Chr1:38288086-38288105 None:intergenic 65.0%
! ATGGCGGAGTGAGGATGGCG+AGG + Chr1:38288087-38288106 None:intergenic 65.0%
AGTTCAGCCCCCGCACTCGG+CGG - Chr1:38287966-38287985 MsG0180002426.01.T01:CDS 70.0%
ATGACCTCCGCCGAGTGCGG+GGG + Chr1:38287976-38287995 None:intergenic 70.0%
CACTCGGCGGAGGTCATGGC+GGG - Chr1:38287979-38287998 MsG0180002426.01.T01:CDS 70.0%
CATGACCTCCGCCGAGTGCG+GGG + Chr1:38287977-38287996 None:intergenic 70.0%
CCATGACCTCCGCCGAGTGC+GGG + Chr1:38287978-38287997 None:intergenic 70.0%
CCGAGTGCGGGGGCTGAACT+AGG + Chr1:38287966-38287985 None:intergenic 70.0%
CGGAGTGAGGATGGCGAGGG+CGG + Chr1:38288083-38288102 None:intergenic 70.0%
GCACTCGGCGGAGGTCATGG+CGG - Chr1:38287978-38287997 MsG0180002426.01.T01:CDS 70.0%
GCCATGACCTCCGCCGAGTG+CGG + Chr1:38287979-38287998 None:intergenic 70.0%
GGAGTGAGGATGGCGAGGGC+GGG + Chr1:38288082-38288101 None:intergenic 70.0%
GGATGGCGAGGGCGGGAAGA+AGG + Chr1:38288075-38288094 None:intergenic 70.0%
GGGGCGGTGGCGTAGAGTGA+GGG + Chr1:38288115-38288134 None:intergenic 70.0%
GTCTGAAGGGAGTGGGGCGG+TGG + Chr1:38288128-38288147 None:intergenic 70.0%
TGGGGCGGTGGCGTAGAGTG+AGG + Chr1:38288116-38288135 None:intergenic 70.0%
CCCGCACTCGGCGGAGGTCA+TGG - Chr1:38287975-38287994 MsG0180002426.01.T01:CDS 75.0%
! TCAGCCCCCGCACTCGGCGG+AGG - Chr1:38287969-38287988 MsG0180002426.01.T01:CDS 80.0%
Chromosome Type Strat End Strand Name
Chr1 gene 38287961 38290725 38287961 ID=MsG0180002426.01;Name=MsG0180002426.01
Chr1 mRNA 38287961 38290725 38287961 ID=MsG0180002426.01.T01;Parent=MsG0180002426.01;Name=MsG0180002426.01.T01;_AED=0.48;_eAED=0.52;_QI=0|0.66|0.25|1|0|0|4|0|208
Chr1 exon 38290391 38290725 38290391 ID=MsG0180002426.01.T01:exon:12946;Parent=MsG0180002426.01.T01
Chr1 exon 38289877 38289995 38289877 ID=MsG0180002426.01.T01:exon:12947;Parent=MsG0180002426.01.T01
Chr1 exon 38289701 38289768 38289701 ID=MsG0180002426.01.T01:exon:12948;Parent=MsG0180002426.01.T01
Chr1 exon 38287961 38288065 38287961 ID=MsG0180002426.01.T01:exon:12949;Parent=MsG0180002426.01.T01
Chr1 CDS 38290391 38290725 38290391 ID=MsG0180002426.01.T01:cds;Parent=MsG0180002426.01.T01
Chr1 CDS 38289877 38289995 38289877 ID=MsG0180002426.01.T01:cds;Parent=MsG0180002426.01.T01
Chr1 CDS 38289701 38289768 38289701 ID=MsG0180002426.01.T01:cds;Parent=MsG0180002426.01.T01
Chr1 CDS 38287961 38288065 38287961 ID=MsG0180002426.01.T01:cds;Parent=MsG0180002426.01.T01
Gene Sequence

>MsG0180002426.01.T01

TGCCTAGTTCAGCCCCCGCACTCGGCGGAGGTCATGGCGGGAACCACCGCCCATTTACTCATCCTCACGCCACATTCATCCTCATTCCCTCGTCCAACCCCTCTATTTTCCCCTTCTTCCCGCCCTCGCCATCCTCACTCCGCCATTAAATCCCTCACTCTACGCCACCGCCCCACTCCCTTCAGACCATGTGCTCAATTCAATCAGTTGGATGGTAGTGGTAGTGGTAGCAAAGAGTCAGAAGGATTGAGCTGGGTTGAACCCATTTTGAGCTTTGCTAGGGGCAATATCTTACCTCTAGGTGCCTCTCTCTATATCAATGCTTTTCAAATTTTGAAATTTGTAGCTCTGATTTCTGCGGTGACGTTAGGATTAACATGTCCTAGTCTTGGTTGCGCTGTTGACAAATATCATGTATCCAAAATTGGGCCGTTTGGAATTTTTGTTATCTCAGGGTTGGTGTTGCGAAGCGAAGAAATTGGTGCAGCTGTAGAAGCATGGCCTGTTGGACTCTTTGGGCTAGTATCTATTTTATTTCTTACACCATACTTTTCTAGGGTAATATTACAAATTCAGCTCCAACCCCAAGAATTTATTACAGGTTTAGCCATTTACATTCTACTCTAA

Protein sequence

>MsG0180002426.01.T01

CLVQPPHSAEVMAGTTAHLLILTPHSSSFPRPTPLFSPSSRPRHPHSAIKSLTLRHRPTPFRPCAQFNQLDGSGSGSKESEGLSWVEPILSFARGNILPLGASLYINAFQILKFVALISAVTLGLTCPSLGCAVDKYHVSKIGPFGIFVISGLVLRSEEIGAAVEAWPVGLFGLVSILFLTPYFSRVILQIQLQPQEFITGLAIYILL*