AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380017593.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380017593.01.T01 MTR_3g109540 98.339 301 5 0 1 301 1 301 0.0 612
MsG0380017593.01.T01 MTR_4g088800 61.966 234 86 2 66 298 64 295 4.27e-104 306
MsG0380017593.01.T01 MTR_3g466440 39.744 156 89 1 85 240 460 610 1.16e-23 101
MsG0380017593.01.T02 MTR_3g109540 97.391 230 6 0 1 230 1 230 5.29e-165 457
MsG0380017593.01.T02 MTR_4g088800 61.446 166 63 1 66 230 64 229 5.95e-70 216
MsG0380017593.01.T02 MTR_3g466440 44.828 116 64 0 118 233 488 603 2.58e-22 95.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380017593.01.T01 AT5G11480 66.460 322 83 5 1 301 1 318 3.47e-137 391
MsG0380017593.01.T01 AT2G22870 59.829 234 91 2 66 298 67 298 2.20e-103 304
MsG0380017593.01.T01 AT5G58370 40.580 138 81 1 103 240 274 410 5.56e-23 98.6
MsG0380017593.01.T01 AT5G58370 40.580 138 81 1 103 240 274 410 6.12e-23 98.6
MsG0380017593.01.T01 AT5G58370 40.580 138 81 1 103 240 274 410 6.12e-23 98.6
MsG0380017593.01.T02 AT5G11480 61.753 251 71 5 1 230 1 247 1.12e-99 293
MsG0380017593.01.T02 AT2G22870 59.639 166 66 1 66 230 67 232 3.25e-68 212
MsG0380017593.01.T02 AT5G58370 42.500 120 69 0 114 233 284 403 3.46e-22 94.7
MsG0380017593.01.T02 AT5G58370 42.500 120 69 0 114 233 284 403 4.04e-22 94.7
MsG0380017593.01.T02 AT5G58370 42.500 120 69 0 114 233 284 403 4.04e-22 94.7

Find 33 sgRNAs with CRISPR-Local

Find 194 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCGGTTAAGGAAATAGTCTT+TGG 0.322070 3:+98265640 None:intergenic
CCAAAGACTATTTCCTTAAC+CGG 0.351830 3:-98265640 MsG0380017593.01.T01:CDS
AAACCAATGTTGACCGGTTA+AGG 0.365120 3:+98265627 None:intergenic
TTGGTGAAGATTAATGTCAT+TGG 0.374167 3:+98264601 None:intergenic
AAATCATTGACATTGTCTTC+AGG 0.377477 3:+98264538 None:intergenic
TGAGCCAGTAGTTCCGGAGC+TGG 0.377582 3:+98264416 None:intergenic
AGTGCTTGAGCCAGTAGTTC+CGG 0.398592 3:+98264410 None:intergenic
CTTGAGTATGCTGCTTGGTT+GGG 0.404038 3:-98265557 MsG0380017593.01.T01:CDS
TGCTTGGTTGGGTGAGAATA+AGG 0.405086 3:-98265546 MsG0380017593.01.T01:intron
TGGTGAAGATTAATGTCATT+GGG 0.416483 3:+98264602 None:intergenic
TCTTGAGTATGCTGCTTGGT+TGG 0.431152 3:-98265558 MsG0380017593.01.T01:CDS
AGTTCCGGAGCTGGGCCATA+TGG 0.447478 3:+98264425 None:intergenic
CGCAGGAACTTAGAATGGAT+TGG 0.455183 3:-98265673 MsG0380017593.01.T01:CDS
GTATCTCATCACGGCCTTGA+TGG 0.455440 3:+98264452 None:intergenic
TGGCCCAGCTCCGGAACTAC+TGG 0.455693 3:-98264420 MsG0380017593.01.T01:CDS
GCAGGAACTTAGAATGGATT+GGG 0.476083 3:-98265672 MsG0380017593.01.T01:CDS
CATTCGAAACCGTGCCTCCA+TGG 0.490848 3:-98264495 MsG0380017593.01.T01:CDS
TAGGTATGCATCTGCGCCGC+AGG 0.492153 3:-98265690 MsG0380017593.01.T01:CDS
TGATGAGATACTACTCCATA+TGG 0.496687 3:-98264440 MsG0380017593.01.T01:CDS
TCTTCACCAAATGTGACAAA+AGG 0.508839 3:-98264588 MsG0380017593.01.T01:CDS
TATCTCATCACGGCCTTGAT+GGG 0.511175 3:+98264453 None:intergenic
TGCGCCGCAGGAACTTAGAA+TGG 0.519575 3:-98265678 MsG0380017593.01.T01:CDS
TACTCCATATGGCCCAGCTC+CGG 0.520727 3:-98264429 MsG0380017593.01.T01:CDS
ACTAGTAATGTCACCCATCA+AGG 0.529857 3:-98264466 MsG0380017593.01.T01:CDS
TTTCCTTAACCGGTCAACAT+TGG 0.555418 3:-98265630 MsG0380017593.01.T01:CDS
GAGCCAGTAGTTCCGGAGCT+GGG 0.563845 3:+98264417 None:intergenic
TTGATCTTGAGTATGCTGCT+TGG 0.585806 3:-98265562 MsG0380017593.01.T01:CDS
ACATTACTAGTCATGATCCA+TGG 0.586698 3:+98264478 None:intergenic
AGACTGAAACCAATGTTGAC+CGG 0.621210 3:+98265621 None:intergenic
CAATCCATTCTAAGTTCCTG+CGG 0.623495 3:+98265674 None:intergenic
AGTCATGATCCATGGAGGCA+CGG 0.640377 3:+98264486 None:intergenic
TATGGAGTAGTATCTCATCA+CGG 0.704699 3:+98264443 None:intergenic
TTACTAGTCATGATCCATGG+AGG 0.783256 3:+98264481 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTTAAATATTATGAACCA+AGG - Chr3:98266442-98266461 MsG0380017593.01.T01:intron 15.0%
!! AGGATTTCATTATTTATAAA+AGG - Chr3:98265278-98265297 MsG0380017593.01.T01:intron 15.0%
!! ATTAAATTTCGCAAATTATA+AGG + Chr3:98265007-98265026 None:intergenic 15.0%
!! TTTCATTATTTATAAAAGGT+TGG - Chr3:98265282-98265301 MsG0380017593.01.T01:intron 15.0%
!!! TGTATATTTTTTTGTTTGTA+GGG - Chr3:98265033-98265052 MsG0380017593.01.T01:intron 15.0%
!!! TTGTATATTTTTTTGTTTGT+AGG - Chr3:98265032-98265051 MsG0380017593.01.T01:intron 15.0%
!!! TTGTTTTATGTTACAAATTT+GGG - Chr3:98265162-98265181 MsG0380017593.01.T01:intron 15.0%
!! AAAAAAAGTCATTGAAGTAA+TGG + Chr3:98266813-98266832 None:intergenic 20.0%
!! AAGGAAAATTAAATTATACC+AGG + Chr3:98266966-98266985 None:intergenic 20.0%
!! AATATACAAACATGTTAGTA+TGG - Chr3:98265208-98265227 MsG0380017593.01.T01:intron 20.0%
!! AGGAAAATTAAATTATACCA+GGG + Chr3:98266965-98266984 None:intergenic 20.0%
!! ATACTAACATGTTTGTATAT+TGG + Chr3:98265209-98265228 None:intergenic 20.0%
!! GAAATTAACTCATAAAATGA+GGG + Chr3:98265585-98265604 None:intergenic 20.0%
!! TAGTGAAATTATAGTTCATA+TGG - Chr3:98265607-98265626 MsG0380017593.01.T01:CDS 20.0%
!! TATGATATATGAACAGATAA+GGG - Chr3:98266391-98266410 MsG0380017593.01.T01:intron 20.0%
!! TTATGATATATGAACAGATA+AGG - Chr3:98266390-98266409 MsG0380017593.01.T01:intron 20.0%
!!! ATTTTAGTCTCATATTGTTA+AGG - Chr3:98265523-98265542 MsG0380017593.01.T01:intron 20.0%
!!! CTTGTTTTATGTTACAAATT+TGG - Chr3:98265161-98265180 MsG0380017593.01.T01:intron 20.0%
!!! TCAAAATTAACTTTTCTTCA+AGG + Chr3:98266478-98266497 None:intergenic 20.0%
!!! TGTTTTATGTTACAAATTTG+GGG - Chr3:98265163-98265182 MsG0380017593.01.T01:intron 20.0%
! AAAAGGAAGAAGAAAAAGAA+TGG - Chr3:98267023-98267042 MsG0380017593.01.T01:CDS 25.0%
! AATACATATATGCATTCCAT+TGG + Chr3:98265355-98265374 None:intergenic 25.0%
! ACATTGTTACATTGTTTACA+GGG + Chr3:98266189-98266208 None:intergenic 25.0%
! ACCTAATGAAAAGAACATAA+AGG + Chr3:98265889-98265908 None:intergenic 25.0%
! ATGGAATGCATATATGTATT+TGG - Chr3:98265355-98265374 MsG0380017593.01.T01:intron 25.0%
! CGAAATTAACTCATAAAATG+AGG + Chr3:98265586-98265605 None:intergenic 25.0%
! GTTTAACTACTTAGTAGATT+GGG - Chr3:98266914-98266933 MsG0380017593.01.T01:CDS 25.0%
! TAAAACAAGATTGCTTTGTA+AGG + Chr3:98265150-98265169 None:intergenic 25.0%
! TATTTATGCCCTACAAAATT+CGG + Chr3:98265451-98265470 None:intergenic 25.0%
! TCACATTACCAAAAATTCTT+GGG - Chr3:98265329-98265348 MsG0380017593.01.T01:intron 25.0%
! TCTACTAAGTAGTTAAACAT+CGG + Chr3:98266912-98266931 None:intergenic 25.0%
! TGTAATAATAATAAGAGACC+AGG + Chr3:98264952-98264971 None:intergenic 25.0%
! TGTTTAACTACTTAGTAGAT+TGG - Chr3:98266913-98266932 MsG0380017593.01.T01:CDS 25.0%
! TTCTTCATTAGAAAATCTGA+TGG - Chr3:98266086-98266105 MsG0380017593.01.T01:intron 25.0%
! TTTAACTACTTAGTAGATTG+GGG - Chr3:98266915-98266934 MsG0380017593.01.T01:CDS 25.0%
!! GAAGTTCTTATTTAAAGTAG+AGG + Chr3:98266678-98266697 None:intergenic 25.0%
!! TTCTTATTTAAAGTAGAGGA+GGG + Chr3:98266674-98266693 None:intergenic 25.0%
!! TTGGGGTTAACAATTTATTT+TGG - Chr3:98266932-98266951 MsG0380017593.01.T01:CDS 25.0%
!!! ATTTTCGAGTTAATGATAGT+TGG - Chr3:98265075-98265094 MsG0380017593.01.T01:intron 25.0%
AAATCATTGACATTGTCTTC+AGG + Chr3:98267059-98267078 None:intergenic 30.0%
AATACTGTCATAGCACATAT+TGG - Chr3:98266358-98266377 MsG0380017593.01.T01:intron 30.0%
ACAAATTTGGGGATTAACAT+TGG - Chr3:98265174-98265193 MsG0380017593.01.T01:intron 30.0%
AGGAAGATGAAATTGTGAAA+AGG + Chr3:98264537-98264556 None:intergenic 30.0%
ATACTGTCATAGCACATATT+GGG - Chr3:98266359-98266378 MsG0380017593.01.T01:intron 30.0%
ATAGACACTAGTAGTAATTG+AGG + Chr3:98266838-98266857 None:intergenic 30.0%
CACATTGTTACATTGTTTAC+AGG + Chr3:98266190-98266209 None:intergenic 30.0%
CGTTTCTCTTCTATATAGAT+GGG + Chr3:98266337-98266356 None:intergenic 30.0%
CTCACATTACCAAAAATTCT+TGG - Chr3:98265328-98265347 MsG0380017593.01.T01:intron 30.0%
GGAAGATGAAATTGTGAAAA+GGG + Chr3:98264536-98264555 None:intergenic 30.0%
GTAATCATACAAACTAGCAT+TGG + Chr3:98265764-98265783 None:intergenic 30.0%
GTCAACTTAAAATCAAGTGA+GGG + Chr3:98266270-98266289 None:intergenic 30.0%
TAAAGGTCAGATCATAAAGA+AGG - Chr3:98266629-98266648 MsG0380017593.01.T01:intron 30.0%
TAGCACTTGATATACTCTAA+AGG - Chr3:98266612-98266631 MsG0380017593.01.T01:intron 30.0%
TCGTTTCTCTTCTATATAGA+TGG + Chr3:98266338-98266357 None:intergenic 30.0%
TGAAATTGTGAAAAGGGAAA+AGG + Chr3:98264530-98264549 None:intergenic 30.0%
TGGTGAAGATTAATGTCATT+GGG + Chr3:98266995-98267014 None:intergenic 30.0%
TTGGTGAAGATTAATGTCAT+TGG + Chr3:98266996-98267015 None:intergenic 30.0%
TTGTAGTTATGCTGAAGAAA+AGG + Chr3:98265807-98265826 None:intergenic 30.0%
TTTCTCAATAGAGTGTGATA+TGG - Chr3:98264480-98264499 MsG0380017593.01.T01:CDS 30.0%
! AGACAATGTCAATGATTTTC+AGG - Chr3:98267061-98267080 MsG0380017593.01.T01:CDS 30.0%
! ATATGTAGCACATACACTTT+TGG - Chr3:98266730-98266749 MsG0380017593.01.T01:CDS 30.0%
! GCCTTTATGTTCTTTTCATT+AGG - Chr3:98265885-98265904 MsG0380017593.01.T01:intron 30.0%
! GTTCTTATTTAAAGTAGAGG+AGG + Chr3:98266675-98266694 None:intergenic 30.0%
! TATTGGAACCGAATTTTGTA+GGG - Chr3:98265440-98265459 MsG0380017593.01.T01:intron 30.0%
! TCTTATTTAAAGTAGAGGAG+GGG + Chr3:98266673-98266692 None:intergenic 30.0%
! TTTGTTTAAGAGTGTGGTTA+AGG + Chr3:98264590-98264609 None:intergenic 30.0%
!! GTTATTATGGGTTCTAGATT+TGG + Chr3:98264643-98264662 None:intergenic 30.0%
!! TATGGGTATGTATGGTTTTA+AGG - Chr3:98265119-98265138 MsG0380017593.01.T01:intron 30.0%
!! TCAAGATCAATCTTTTTAGC+AGG + Chr3:98266022-98266041 None:intergenic 30.0%
!! TCTGACATTTAATTTGTCTC+TGG - Chr3:98265714-98265733 MsG0380017593.01.T01:intron 30.0%
!!! AAGAGTTTTTCGAGAGATAA+GGG + Chr3:98264679-98264698 None:intergenic 30.0%
!!! TTTATTTTGGTAATTGACCC+TGG - Chr3:98266945-98266964 MsG0380017593.01.T01:CDS 30.0%
AAAAGGGAAAAGGATAACCT+TGG + Chr3:98264520-98264539 None:intergenic 35.0%
AAACCCGTTTAGCATAGTAT+TGG - Chr3:98265423-98265442 MsG0380017593.01.T01:intron 35.0%
AAGTTAAAGCGAGTTTCTTG+CGG + Chr3:98264921-98264940 None:intergenic 35.0%
ACATTACTAGTCATGATCCA+TGG + Chr3:98267119-98267138 None:intergenic 35.0%
AGCTTTCTACAAAACTGAAC+AGG + Chr3:98265844-98265863 None:intergenic 35.0%
AGGAAGAAGAAAAAGAATGG+AGG - Chr3:98267026-98267045 MsG0380017593.01.T01:CDS 35.0%
CAATGTGTATGTACTGAGAA+TGG - Chr3:98266203-98266222 MsG0380017593.01.T01:intron 35.0%
CAGGGCATGTAAAGATAAAA+TGG + Chr3:98266171-98266190 None:intergenic 35.0%
CCAAAGACTATTTCCTTAAC+CGG - Chr3:98265954-98265973 MsG0380017593.01.T01:intron 35.0%
CGTCAACTTAAAATCAAGTG+AGG + Chr3:98266271-98266290 None:intergenic 35.0%
CTCATATTGTTAAGGTTCCT+TGG - Chr3:98265531-98265550 MsG0380017593.01.T01:intron 35.0%
GACAACGCAAGAATCTTAAA+CGG - Chr3:98264727-98264746 MsG0380017593.01.T01:intron 35.0%
GGTTCCAATACTATGCTAAA+CGG + Chr3:98265430-98265449 None:intergenic 35.0%
GTGTCAAACATCATAACAGT+AGG - Chr3:98265258-98265277 MsG0380017593.01.T01:intron 35.0%
GTTCCAATACTATGCTAAAC+GGG + Chr3:98265429-98265448 None:intergenic 35.0%
TAATGTCATTGGGATCTGAA+AGG + Chr3:98266985-98267004 None:intergenic 35.0%
TATGGAGTAGTATCTCATCA+CGG + Chr3:98267154-98267173 None:intergenic 35.0%
TCTTCACCAAATGTGACAAA+AGG - Chr3:98267006-98267025 MsG0380017593.01.T01:CDS 35.0%
TGATGAGATACTACTCCATA+TGG - Chr3:98267154-98267173 MsG0380017593.01.T01:five_prime_UTR 35.0%
TTAAACATCGGACATAGTAG+TGG + Chr3:98266900-98266919 None:intergenic 35.0%
! AGTTAATGATAGTTGGTACC+TGG - Chr3:98265082-98265101 MsG0380017593.01.T01:intron 35.0%
! CTTCTTCCTTTTGTCACATT+TGG + Chr3:98267015-98267034 None:intergenic 35.0%
! GAAGTTGTGAGAGATGATTT+TGG + Chr3:98264616-98264635 None:intergenic 35.0%
! GCTTTAACTTCAAAGAAACC+TGG - Chr3:98264931-98264950 MsG0380017593.01.T01:intron 35.0%
! GTATTGGAACCGAATTTTGT+AGG - Chr3:98265439-98265458 MsG0380017593.01.T01:intron 35.0%
!! AATCTTTTTAGCAGGAATGC+TGG + Chr3:98266014-98266033 None:intergenic 35.0%
!! CTTCTATATAGATGGGTTGT+AGG + Chr3:98266330-98266349 None:intergenic 35.0%
!! TTTTGGTTGAAGTCGTGTTT+GGG - Chr3:98266747-98266766 MsG0380017593.01.T01:CDS 35.0%
!!! GAAGAGTTTTTCGAGAGATA+AGG + Chr3:98264680-98264699 None:intergenic 35.0%
!!! TCGGTTTTAGGGGTTATTAT+GGG + Chr3:98264655-98264674 None:intergenic 35.0%
!!! TTCGGTTTTAGGGGTTATTA+TGG + Chr3:98264656-98264675 None:intergenic 35.0%
!!! TTTTAAGTTGACGACATCTG+TGG - Chr3:98266278-98266297 MsG0380017593.01.T01:intron 35.0%
!!! TTTTTCGAGAGATAAGGGTT+CGG + Chr3:98264674-98264693 None:intergenic 35.0%
AAACCAATGTTGACCGGTTA+AGG + Chr3:98265970-98265989 None:intergenic 40.0%
AACCATACATACCCATATCC+AGG + Chr3:98265116-98265135 None:intergenic 40.0%
AAGAATCGATAAGAGCTGAG+CGG - Chr3:98266129-98266148 MsG0380017593.01.T01:intron 40.0%
AAGAGTAGTTCATCTACACC+AGG - Chr3:98266570-98266589 MsG0380017593.01.T01:intron 40.0%
AAGCGATGATTTCCCAACAT+TGG + Chr3:98264881-98264900 None:intergenic 40.0%
ACACTCTATTGAGAAACACG+CGG + Chr3:98264476-98264495 None:intergenic 40.0%
ACCAAAAATTCTTGGGCCAA+TGG - Chr3:98265336-98265355 MsG0380017593.01.T01:intron 40.0%
ACTAGTAATGTCACCCATCA+AGG - Chr3:98267128-98267147 MsG0380017593.01.T01:five_prime_UTR 40.0%
AGACTGAAACCAATGTTGAC+CGG + Chr3:98265976-98265995 None:intergenic 40.0%
AGGATAACCTTGGTAGATGA+AGG + Chr3:98264510-98264529 None:intergenic 40.0%
ATAGAGTCTGCGAGAAAATG+AGG + Chr3:98264557-98264576 None:intergenic 40.0%
ATGTATACATTGCACAGCCA+AGG + Chr3:98265551-98265570 None:intergenic 40.0%
ATGTGCTACATATACTGCCT+AGG + Chr3:98266723-98266742 None:intergenic 40.0%
ATTATGAACCAAGGTAAGCG+TGG - Chr3:98266451-98266470 MsG0380017593.01.T01:intron 40.0%
CAATCCATTCTAAGTTCCTG+CGG + Chr3:98265923-98265942 None:intergenic 40.0%
CATGGAAAGTGGATCACTTA+AGG + Chr3:98266700-98266719 None:intergenic 40.0%
CCGGTTAAGGAAATAGTCTT+TGG + Chr3:98265957-98265976 None:intergenic 40.0%
CGTGGCTTCTATTTAGATAG+AGG + Chr3:98266513-98266532 None:intergenic 40.0%
GTGTTGTGGAAATATCTCAG+CGG + Chr3:98264448-98264467 None:intergenic 40.0%
TAAAGAAGGAAAGCCTCTAG+CGG - Chr3:98266643-98266662 MsG0380017593.01.T01:intron 40.0%
TCGATCTCACTCTCAAAAGT+TGG + Chr3:98265404-98265423 None:intergenic 40.0%
TGCGAGACAATGATATGTGT+CGG + Chr3:98266776-98266795 None:intergenic 40.0%
TTACTAGTCATGATCCATGG+AGG + Chr3:98267116-98267135 None:intergenic 40.0%
TTGATCTTGAGTATGCTGCT+TGG - Chr3:98266032-98266051 MsG0380017593.01.T01:intron 40.0%
TTGTTGGTCGTTCCAATGTT+GGG - Chr3:98264866-98264885 MsG0380017593.01.T01:intron 40.0%
TTTCCTTAACCGGTCAACAT+TGG - Chr3:98265964-98265983 MsG0380017593.01.T01:intron 40.0%
! GCAGGAACTTAGAATGGATT+GGG - Chr3:98265922-98265941 MsG0380017593.01.T01:intron 40.0%
! GTTGTGAGAGATGATTTTGG+TGG + Chr3:98264613-98264632 None:intergenic 40.0%
! TCCATTGGCCCAAGAATTTT+TGG + Chr3:98265340-98265359 None:intergenic 40.0%
! TGGTTATGTTGTGACTTGTG+TGG - Chr3:98266106-98266125 MsG0380017593.01.T01:intron 40.0%
!! AGAGATAAGGGTTCGGTTTT+AGG + Chr3:98264667-98264686 None:intergenic 40.0%
!! AGATAAGGGTTCGGTTTTAG+GGG + Chr3:98264665-98264684 None:intergenic 40.0%
!! CTTTTGGTTGAAGTCGTGTT+TGG - Chr3:98266746-98266765 MsG0380017593.01.T01:CDS 40.0%
!! GAGATAAGGGTTCGGTTTTA+GGG + Chr3:98264666-98264685 None:intergenic 40.0%
!! TGGTGGTTTGTTTAAGAGTG+TGG + Chr3:98264596-98264615 None:intergenic 40.0%
!! TGGTTGATTTGCCTGGATAT+GGG - Chr3:98265102-98265121 MsG0380017593.01.T01:intron 40.0%
!!! GATTTTCAGGAGTTGATACG+TGG - Chr3:98267074-98267093 MsG0380017593.01.T01:CDS 40.0%
ACCATCGGAAGGACAATCTT+CGG + Chr3:98264830-98264849 None:intergenic 45.0%
AGTTGACGACATCTGTGGAT+CGG - Chr3:98266283-98266302 MsG0380017593.01.T01:intron 45.0%
CAATACAGCATGAGTGACAC+AGG + Chr3:98266548-98266567 None:intergenic 45.0%
CACAGGTTTGATGTTAGACG+TGG + Chr3:98266531-98266550 None:intergenic 45.0%
CATATCCAGGCAAATCAACC+AGG + Chr3:98265103-98265122 None:intergenic 45.0%
CGCAGGAACTTAGAATGGAT+TGG - Chr3:98265921-98265940 MsG0380017593.01.T01:intron 45.0%
CTACATATACTGCCTAGGCA+TGG + Chr3:98266718-98266737 None:intergenic 45.0%
CTTGTTGGTCGTTCCAATGT+TGG - Chr3:98264865-98264884 MsG0380017593.01.T01:intron 45.0%
GTAGTTCATCTACACCAGGT+TGG - Chr3:98266574-98266593 MsG0380017593.01.T01:intron 45.0%
TATCTCATCACGGCCTTGAT+GGG + Chr3:98267144-98267163 None:intergenic 45.0%
TCGTGAGTGACATGAGTGTT+TGG + Chr3:98264709-98264728 None:intergenic 45.0%
TGAGTGACATGAGTGTTTGG+AGG + Chr3:98264706-98264725 None:intergenic 45.0%
TGCCTGGATATGGGTATGTA+TGG - Chr3:98265111-98265130 MsG0380017593.01.T01:intron 45.0%
TGCTTGGTTGGGTGAGAATA+AGG - Chr3:98266048-98266067 MsG0380017593.01.T01:intron 45.0%
TGGTTGTCCTTCATCTACCA+AGG - Chr3:98264500-98264519 MsG0380017593.01.T01:CDS 45.0%
! CTTGAGTATGCTGCTTGGTT+GGG - Chr3:98266037-98266056 MsG0380017593.01.T01:intron 45.0%
! TCTTGAGTATGCTGCTTGGT+TGG - Chr3:98266036-98266055 MsG0380017593.01.T01:intron 45.0%
!! CTGGTTGATTTGCCTGGATA+TGG - Chr3:98265101-98265120 MsG0380017593.01.T01:intron 45.0%
!! GAGTGTTTTTGCTCGCGATA+CGG + Chr3:98264424-98264443 None:intergenic 45.0%
!!! AATAATTTTTAATATAGTTA+TGG - Chr3:98266234-98266253 MsG0380017593.01.T01:intron 5.0%
AACTCAGGAAGACCATCGGA+AGG + Chr3:98264841-98264860 None:intergenic 50.0%
ACCGAAGATTGTCCTTCCGA+TGG - Chr3:98264826-98264845 MsG0380017593.01.T01:intron 50.0%
AGCGAACTCAGGAAGACCAT+CGG + Chr3:98264845-98264864 None:intergenic 50.0%
AGTCATGATCCATGGAGGCA+CGG + Chr3:98267111-98267130 None:intergenic 50.0%
AGTGCTTGAGCCAGTAGTTC+CGG + Chr3:98267187-98267206 None:intergenic 50.0%
CTTCCTGAGTTCGCTCTTGT+TGG - Chr3:98264850-98264869 MsG0380017593.01.T01:intron 50.0%
GTATCTCATCACGGCCTTGA+TGG + Chr3:98267145-98267164 None:intergenic 50.0%
GTGATCCACTTTCCATGCCT+AGG - Chr3:98266703-98266722 MsG0380017593.01.T01:CDS 50.0%
TACTGCCTAGGCATGGAAAG+TGG + Chr3:98266711-98266730 None:intergenic 50.0%
TATTGAGAAACACGCGGACG+CGG + Chr3:98264470-98264489 None:intergenic 50.0%
TCAATACCCATGCTCGCATG+TGG + Chr3:98265497-98265516 None:intergenic 50.0%
TGCAGCTTGATTGTCCAACC+TGG + Chr3:98266591-98266610 None:intergenic 50.0%
TTCAAGGTCCACGCTTACCT+TGG + Chr3:98266462-98266481 None:intergenic 50.0%
! GTTTTTGCTCGCGATACGGT+CGG + Chr3:98264420-98264439 None:intergenic 50.0%
!! TGGTACCTGGTTGATTTGCC+TGG - Chr3:98265095-98265114 MsG0380017593.01.T01:intron 50.0%
CATTCGAAACCGTGCCTCCA+TGG - Chr3:98267099-98267118 MsG0380017593.01.T01:intron 55.0%
CGACCAACAAGAGCGAACTC+AGG + Chr3:98264856-98264875 None:intergenic 55.0%
CTCGCATGTGGTGTGGGTTT+AGG + Chr3:98265485-98265504 None:intergenic 55.0%
TACTCCATATGGCCCAGCTC+CGG - Chr3:98267165-98267184 MsG0380017593.01.T01:five_prime_UTR 55.0%
TGCGCCGCAGGAACTTAGAA+TGG - Chr3:98265916-98265935 MsG0380017593.01.T01:intron 55.0%
ACCCACACCACATGCGAGCA+TGG - Chr3:98265487-98265506 MsG0380017593.01.T01:intron 60.0%
ACCCATGCTCGCATGTGGTG+TGG + Chr3:98265492-98265511 None:intergenic 60.0%
AGTTCCGGAGCTGGGCCATA+TGG + Chr3:98267172-98267191 None:intergenic 60.0%
CCCACACCACATGCGAGCAT+GGG - Chr3:98265488-98265507 MsG0380017593.01.T01:intron 60.0%
CCCATGCTCGCATGTGGTGT+GGG + Chr3:98265491-98265510 None:intergenic 60.0%
GACGACATCTGTGGATCGGC+TGG - Chr3:98266287-98266306 MsG0380017593.01.T01:intron 60.0%
GAGCCAGTAGTTCCGGAGCT+GGG + Chr3:98267180-98267199 None:intergenic 60.0%
GAGGAGGGGTAAACCGCTAG+AGG + Chr3:98266659-98266678 None:intergenic 60.0%
TAGGTATGCATCTGCGCCGC+AGG - Chr3:98265904-98265923 MsG0380017593.01.T01:intron 60.0%
TGAGCCAGTAGTTCCGGAGC+TGG + Chr3:98267181-98267200 None:intergenic 60.0%
TGGCCCAGCTCCGGAACTAC+TGG - Chr3:98267174-98267193 MsG0380017593.01.T01:five_prime_UTR 65.0%
! AACACGCGGACGCGGTGTTG+TGG + Chr3:98264462-98264481 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
Chr3 gene 98264408 98267208 98264408 ID=MsG0380017593.01;Name=MsG0380017593.01
Chr3 mRNA 98264408 98267208 98264408 ID=MsG0380017593.01.T01;Parent=MsG0380017593.01;Name=MsG0380017593.01.T01;_AED=0.49;_eAED=0.49;_QI=91|1|1|1|1|1|4|0|301
Chr3 exon 98264408 98264626 98264408 ID=MsG0380017593.01.T01:exon:4158;Parent=MsG0380017593.01.T01
Chr3 exon 98265547 98265709 98265547 ID=MsG0380017593.01.T01:exon:4157;Parent=MsG0380017593.01.T01
Chr3 five_prime_UTR 98267118 98267208 98267118 ID=MsG0380017593.01.T01:five_prime_utr;Parent=MsG0380017593.01.T01
Chr3 CDS 98266664 98267117 98266664 ID=MsG0380017593.01.T01:cds;Parent=MsG0380017593.01.T01
Chr3 CDS 98266493 98266562 98266493 ID=MsG0380017593.01.T01:cds;Parent=MsG0380017593.01.T01
Chr3 CDS 98265547 98265709 98265547 ID=MsG0380017593.01.T01:cds;Parent=MsG0380017593.01.T01
Chr3 CDS 98264408 98264626 98264408 ID=MsG0380017593.01.T01:cds;Parent=MsG0380017593.01.T01
Chr3 mRNA 98265520 98267208 98265520 ID=MsG0380017593.01.T02;Parent=MsG0380017593.01;Name=MsG0380017593.01.T02;_AED=0.49;_eAED=0.49;_QI=91|1|1|1|1|1|3|0|237
Chr3 exon 98265520 98265709 98265520 ID=MsG0380017593.01.T02:exon:4159;Parent=MsG0380017593.01.T02
Chr3 five_prime_UTR 98267118 98267208 98267118 ID=MsG0380017593.01.T02:five_prime_utr;Parent=MsG0380017593.01.T02
Chr3 CDS 98266664 98267117 98266664 ID=MsG0380017593.01.T02:cds;Parent=MsG0380017593.01.T02
Chr3 CDS 98266493 98266562 98266493 ID=MsG0380017593.01.T02:cds;Parent=MsG0380017593.01.T02
Chr3 CDS 98265520 98265709 98265520 ID=MsG0380017593.01.T02:cds;Parent=MsG0380017593.01.T02
Gene Sequence

>MsG0380017593.01.T01

ATGGTTGTCCTTCATCTACCAAGGTTATCCTTTTCCCTTTTCACAATTTCATCTTCCTCATTTTCTCGCAGACTCTATTCAACAAACACCTTAACCACACTCTTAAACAAACCACCAAAATCATCTCTCACAACTTCAGTACCAAATCTAGAACCCATAATAACCCCTAAAACCGAACCCTTATCTCTCGAAAAACTCTTCATTCCTCCAAACACTCATGTCACTCACGACAACGCAAGAATCTTAAACGGTTCAAATATATTACTCAGTAACTACGCTAATGATGCTCAAATTATACAAGCAGATTTTGTCAAAAGCAGTGTTAGAACCGAAGATTGTCCTTCCGATGGTCTTCCTGAGTTCGCTCTTGTTGGTCGTTCCAATGTTGGGAAATCATCGCTTCTTAATTCTATTGTTCGCCGCAAGAAACTCGCTTTAACTTCAAAGAAACCTGGGAAGACGCAATTGATTAATCATTTTCGAGTTAATGATAGTTGGTACCTGGTTGATTTGCCTGGATATGGGTATGCATCTGCGCCGCAGGAACTTAGAATGGATTGGGCGAAATTCACCAAAGACTATTTCCTTAACCGGTCAACATTGGTTTCAGTCTTTCTTCTAATAGACGCCAGCATTCCTGCTAAAAAGATTGATCTTGAGTATGCTGCTTGGTTGGGTGAGAATAAGATCCCAATGACATTAATCTTCACCAAATGTGACAAAAGGAAGAAGAAAAAGAATGGAGGCAAAAGACCTGAAGACAATGTCAATGATTTTCAGGAGTTGATACGTGGCTCATTCGAAACCGTGCCTCCATGGATCATGACTAGTAATGTCACCCATCAAGGCCGTGATGAGATACTACTCCATATGGCCCAGCTCCGGAACTACTGGCTCAAGCACTAG

>MsG0380017593.01.T02

ATGGTTGTCCTTCATCTACCAAGGTTATCCTTTTCCCTTTTCACAATTTCATCTTCCTCATTTTCTCGCAGACTCTATTCAACAAACACCTTAACCACACTCTTAAACAAACCACCAAAATCATCTCTCACAACTTCAGTACCAAATCTAGAACCCATAATAACCCCTAAAACCGAACCCTTATCTCTCGAAAAACTCTTCATTCCTCCAAACACTCATGTCACTCACGACAACGCAAGAATCTTAAACGGTTCAAATATATTACTCAGTAACTACGCTAATGATGCTCAAATTATACAAGCAGATTTTGTCAAAAGCAGTGTTAGAACCGAAGATTGTCCTTCCGATGGTCTTCCTGAGTTCGCTCTTGTTGGTCGTTCCAATGTTGGGAAATCATCGCTTCTTAATTCTATTGTTCGCCGCAAGAAACTCGCTTTAACTTCAAAGAAACCTGGGAAGACGCAATTGATTAATCATTTTCGAGTTAATGATAGTTGGTACCTGGTTGATTTGCCTGGATATGGGTATGCATCTGCGCCGCAGGAACTTAGAATGGATTGGGCGAAATTCACCAAAGACTATTTCCTTAACCGGTCAACATTGGTTTCAGTCTTTCTTCTAATAGACGCCAGCATTCCTGCTAAAAAGATTGATCTTGAGTATGCTGCTTGGTTGGGTGAGAATAAGGTAATGCATCAAAAATTTCTTCATTAG
Protein sequence

>MsG0380017593.01.T01

MVVLHLPRLSFSLFTISSSSFSRRLYSTNTLTTLLNKPPKSSLTTSVPNLEPIITPKTEPLSLEKLFIPPNTHVTHDNARILNGSNILLSNYANDAQIIQADFVKSSVRTEDCPSDGLPEFALVGRSNVGKSSLLNSIVRRKKLALTSKKPGKTQLINHFRVNDSWYLVDLPGYGYASAPQELRMDWAKFTKDYFLNRSTLVSVFLLIDASIPAKKIDLEYAAWLGENKIPMTLIFTKCDKRKKKKNGGKRPEDNVNDFQELIRGSFETVPPWIMTSNVTHQGRDEILLHMAQLRNYWLKH*

>MsG0380017593.01.T02

MVVLHLPRLSFSLFTISSSSFSRRLYSTNTLTTLLNKPPKSSLTTSVPNLEPIITPKTEPLSLEKLFIPPNTHVTHDNARILNGSNILLSNYANDAQIIQADFVKSSVRTEDCPSDGLPEFALVGRSNVGKSSLLNSIVRRKKLALTSKKPGKTQLINHFRVNDSWYLVDLPGYGYASAPQELRMDWAKFTKDYFLNRSTLVSVFLLIDASIPAKKIDLEYAAWLGENKVMHQKFLH*