AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0780039805.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780039805.01.T01 MTR_7g079520 92.638 163 6 2 1 157 1 163 2.42e-103 300
MsG0780039805.01.T01 MTR_7g079520 56.442 163 15 3 1 157 1 113 1.69e-42 142
MsG0780039805.01.T01 MTR_4g016930 43.860 114 60 2 45 155 169 281 3.31e-25 102
MsG0780039805.01.T01 MTR_4g088905 49.462 93 47 0 65 157 277 369 1.35e-24 103
MsG0780039805.01.T01 MTR_4g088905 35.220 159 97 2 68 224 151 305 1.09e-23 100
MsG0780039805.01.T01 MTR_4g088905 43.396 106 57 2 53 155 370 475 4.94e-22 95.9
MsG0780039805.01.T01 MTR_2g103130 37.000 100 63 0 60 159 42 141 2.16e-21 89.0
MsG0780039805.01.T01 MTR_8g091830 65.909 44 15 0 193 236 781 824 7.67e-13 69.3
MsG0780039805.01.T01 MTR_2g013980 51.515 66 28 1 193 258 1069 1130 3.89e-12 67.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780039805.01.T01 AT3G54900 64.062 128 41 2 32 157 31 155 6.91e-51 166
MsG0780039805.01.T01 AT2G38270 48.454 97 47 1 62 155 182 278 3.88e-25 102
MsG0780039805.01.T01 AT4G04950 36.170 141 84 2 21 159 103 239 5.63e-25 104
MsG0780039805.01.T01 AT4G04950 51.807 83 40 0 73 155 390 472 3.67e-24 102
MsG0780039805.01.T01 AT4G04950 38.053 113 70 0 45 157 255 367 3.85e-21 93.6
MsG0780039805.01.T01 AT3G15660 41.111 90 53 0 70 159 62 151 2.71e-21 89.0
MsG0780039805.01.T01 AT3G15660 41.111 90 53 0 70 159 62 151 2.71e-21 89.0

Find 70 sgRNAs with CRISPR-Local

Find 171 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCTTCCACTCCCACCTTTC+TGG 0.097663 7:-69273297 MsG0780039805.01.T01:CDS
ACGTTGTTTGAGTTGAATTT+TGG 0.141392 7:+69273194 None:intergenic
GGATGTGTGGTAAGATTAAA+TGG 0.234396 7:-69272456 MsG0780039805.01.T01:CDS
GTCTTTGTGTGGTACAATAT+TGG 0.259625 7:-69272601 MsG0780039805.01.T01:CDS
TCCAATGTGGTCTTCAATTC+AGG 0.267749 7:+69272904 None:intergenic
ATACTACATTGCAATTATTC+TGG 0.297963 7:-69270837 MsG0780039805.01.T01:three_prime_UTR
TCTAAGTTATACAATGGCTT+TGG 0.322177 7:-69270934 MsG0780039805.01.T01:three_prime_UTR
TTTCCTCAGCTCTATATTGA+TGG 0.331430 7:-69272697 MsG0780039805.01.T01:CDS
ACTTCGTCTCATACAACATT+AGG 0.350516 7:+69272542 None:intergenic
TCCACCACAATTCGCTGTTC+TGG 0.367215 7:-69273168 MsG0780039805.01.T01:intron
CAAGGCAACATTGATTGATT+AGG 0.370703 7:+69272578 None:intergenic
CTAAGTTATACAATGGCTTT+GGG 0.393776 7:-69270933 MsG0780039805.01.T01:three_prime_UTR
CTGAGGAAAGGTAGGCCAAC+TGG 0.420603 7:+69272711 None:intergenic
ATATAAGAATGGAGAATTGC+AGG 0.421470 7:-69271015 MsG0780039805.01.T01:CDS
TTTGTTAAACTTCCTTGATC+GGG 0.424035 7:-69270722 MsG0780039805.01.T01:three_prime_UTR
TCATGAGCAAATGAGGCTTC+AGG 0.426017 7:+69270968 None:intergenic
GATTTCACAATTTAAATCAA+TGG 0.428082 7:+69270680 None:intergenic
TTTGTTTATGAAGGGTACTA+AGG 0.428166 7:-69272854 MsG0780039805.01.T01:CDS
ATTGAAGACCACATTGGATA+AGG 0.438141 7:-69272899 MsG0780039805.01.T01:CDS
TGCAGTAAACATATGAAAGC+TGG 0.474673 7:+69271172 None:intergenic
GGACAATGATATGTTGCGCC+AGG 0.483058 7:-69272749 MsG0780039805.01.T01:CDS
GAGTGGAAGCATGATGTTGT+TGG 0.489165 7:+69273309 None:intergenic
TGTTGTATGAGACGAAGTCT+TGG 0.489490 7:-69272537 MsG0780039805.01.T01:CDS
TGGAATATTCCTTCAGTCCC+TGG 0.492321 7:+69272731 None:intergenic
AAGTAGAATATCTCATTGAA+TGG 0.497886 7:-69270802 MsG0780039805.01.T01:three_prime_UTR
CTAAAACTAACAGTGGCACT+TGG 0.499511 7:-69273436 MsG0780039805.01.T01:five_prime_UTR
AGTGGAAGCATGATGTTGTT+GGG 0.517707 7:+69273310 None:intergenic
GGTGGATGTGATATCACTGT+TGG 0.517878 7:-69272664 MsG0780039805.01.T01:CDS
TTGTTGTTGTTCCAGAAAGG+TGG 0.520239 7:+69273286 None:intergenic
AGGTTGTTGTTGTTCCAGAA+AGG 0.520451 7:+69273283 None:intergenic
TGTAGTAGTTATCCCGATCA+AGG 0.521543 7:+69270710 None:intergenic
GTTGTTGGGTGCAAAGAGAA+TGG 0.526869 7:+69273324 None:intergenic
ACAGTGTGGATTCTCAAATA+CGG 0.531828 7:-69272824 MsG0780039805.01.T01:CDS
TGGAGAATTGCAGGAACTAG+TGG 0.537216 7:-69271006 MsG0780039805.01.T01:CDS
TGTTGTTGTTCCAGAAAGGT+GGG 0.542187 7:+69273287 None:intergenic
ATAATCATAACAGACATTTG+TGG 0.542828 7:+69270874 None:intergenic
CTAATCAATCAATGTTGCCT+TGG 0.546531 7:-69272577 MsG0780039805.01.T01:CDS
TACTTGTTTCTGTCTTTGTG+TGG 0.548444 7:-69272612 MsG0780039805.01.T01:CDS
TTGTTCCAGAAAGGTGGGAG+TGG 0.549856 7:+69273292 None:intergenic
GTTATGCTCATGAGCAAATG+AGG 0.554359 7:+69270961 None:intergenic
TTTACAAATTGCTTTCGAGT+AGG 0.558314 7:-69271199 MsG0780039805.01.T01:CDS
CAGAGATGAGGATGTTGTGT+TGG 0.560879 7:-69272477 MsG0780039805.01.T01:CDS
GCTGCAGAGGCATATAAGAA+TGG 0.563746 7:-69271026 MsG0780039805.01.T01:intron
GCCATTGTATAACTTAGAGA+TGG 0.565648 7:+69270939 None:intergenic
AGGATGTTGTGTTGGATGTG+TGG 0.569926 7:-69272469 MsG0780039805.01.T01:CDS
GTTGTATGAGACGAAGTCTT+GGG 0.569998 7:-69272536 MsG0780039805.01.T01:CDS
CTTGGAAAGAGAATTGCGAT+TGG 0.571749 7:-69273418 MsG0780039805.01.T01:five_prime_UTR
ATTGCAGGAACTAGTGGAGA+AGG 0.576931 7:-69271000 MsG0780039805.01.T01:CDS
GATGTGTGGTAAGATTAAAT+GGG 0.578975 7:-69272455 MsG0780039805.01.T01:CDS
TATGTTGCGCCAGGGACTGA+AGG 0.584756 7:-69272740 MsG0780039805.01.T01:CDS
ATGAAAATCAGAAATTCAAG+AGG 0.590589 7:+69272634 None:intergenic
ACCAGAACAGCGAATTGTGG+TGG 0.597995 7:+69273167 None:intergenic
GACTGAAGGAATATTCCAGT+TGG 0.605067 7:-69272726 MsG0780039805.01.T01:CDS
AACTAAGTGTAGCAGAGATG+AGG 0.606712 7:-69272489 MsG0780039805.01.T01:CDS
ATATAGAGCTGAGGAAAGGT+AGG 0.606983 7:+69272703 None:intergenic
ACCATCTCTAAGTTATACAA+TGG 0.610743 7:-69270940 MsG0780039805.01.T01:three_prime_UTR
GGGTTGGGAATGGAAAATTG+TGG 0.615218 7:+69273215 None:intergenic
ATCAATATAGAGCTGAGGAA+AGG 0.620513 7:+69272699 None:intergenic
GACAATGATATGTTGCGCCA+GGG 0.628102 7:-69272748 MsG0780039805.01.T01:CDS
TCCTGAATTGAAGACCACAT+TGG 0.633554 7:-69272905 MsG0780039805.01.T01:CDS
TCTCCATCAATATAGAGCTG+AGG 0.637233 7:+69272694 None:intergenic
GATAAAACTAAAACTAACAG+TGG 0.654005 7:-69273443 MsG0780039805.01.T01:five_prime_UTR
AGTACCAGAACAGCGAATTG+TGG 0.667307 7:+69273164 None:intergenic
TTAGGTTAACATTATCACCA+AGG 0.687400 7:+69272560 None:intergenic
AGTAAACATATGAAAGCTGG+AGG 0.703022 7:+69271175 None:intergenic
AGAACAAGAGATGAACGAGG+TGG 0.704457 7:+69273246 None:intergenic
TGTAACAACCTTATCCAATG+TGG 0.706621 7:+69272891 None:intergenic
AGGTGGAAGAGACAGTGACG+AGG 0.722890 7:+69273263 None:intergenic
TTGAGAACAAGAGATGAACG+AGG 0.740346 7:+69273243 None:intergenic
GTATTTGAGAATCCACACTG+TGG 0.816826 7:+69272826 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAGATAATTAAAGATATTAA+CGG + Chr7:69272380-69272399 None:intergenic 10.0%
!!! TTAAATTTATTTTTTAGCAT+CGG - Chr7:69273032-69273051 MsG0780039805.01.T01:intron 10.0%
!! TAAATCTTCAAAAAATTAGA+AGG + Chr7:69272753-69272772 None:intergenic 15.0%
!! TATACATTAGTTAAAAAGTA+TGG - Chr7:69272484-69272503 MsG0780039805.01.T01:CDS 15.0%
!! TGTATATTAGTAGAAAAATA+CGG + Chr7:69272165-69272184 None:intergenic 15.0%
!!! AAAATAGTTTTGTTTATGAA+GGG - Chr7:69271286-69271305 MsG0780039805.01.T01:intron 15.0%
!! AATATTATACATTGTCAACT+AGG + Chr7:69272125-69272144 None:intergenic 20.0%
!! TAATGAGTTCGATATAAATA+TGG - Chr7:69271934-69271953 MsG0780039805.01.T01:intron 20.0%
!! TAATGGAGATATTATACTAT+AGG - Chr7:69272711-69272730 MsG0780039805.01.T01:CDS 20.0%
!! TAGTTATCATGTTAAACTAA+TGG - Chr7:69272694-69272713 MsG0780039805.01.T01:CDS 20.0%
!!! AAAATTAGAAGGAAGTATAT+AGG + Chr7:69272742-69272761 None:intergenic 20.0%
!!! CAAAATAGTTTTGTTTATGA+AGG - Chr7:69271285-69271304 MsG0780039805.01.T01:intron 20.0%
!!! GTTTTAGTTTTATCAAATCA+TGG + Chr7:69270699-69270718 None:intergenic 20.0%
!!! TTTTGAAACGATAAACATAT+TGG - Chr7:69271378-69271397 MsG0780039805.01.T01:intron 20.0%
! AAAATAGAGTTAACCCTAAA+AGG + Chr7:69271119-69271138 None:intergenic 25.0%
! AAATAGAGTTAACCCTAAAA+GGG + Chr7:69271118-69271137 None:intergenic 25.0%
! AAGTAGAATATCTCATTGAA+TGG - Chr7:69273346-69273365 MsG0780039805.01.T01:CDS 25.0%
! AATTAGAACCTAAAAAGAAG+TGG - Chr7:69272782-69272801 MsG0780039805.01.T01:CDS 25.0%
! ATAATCATAACAGACATTTG+TGG + Chr7:69273277-69273296 None:intergenic 25.0%
! ATACTACATTGCAATTATTC+TGG - Chr7:69273311-69273330 MsG0780039805.01.T01:CDS 25.0%
! ATATTGTCTTAAATGCAACT+TGG - Chr7:69271186-69271205 MsG0780039805.01.T01:CDS 25.0%
! ATGAAAATCAGAAATTCAAG+AGG + Chr7:69271517-69271536 None:intergenic 25.0%
! ATTATCATGTAAGATGTTGT+TGG - Chr7:69272194-69272213 MsG0780039805.01.T01:intron 25.0%
! GATAAAACTAAAACTAACAG+TGG - Chr7:69270705-69270724 MsG0780039805.01.T01:three_prime_UTR 25.0%
! GTGAATTGTGAAAAATTGAA+GGG + Chr7:69271089-69271108 None:intergenic 25.0%
! TACTTTCATTAAAACCAATC+TGG + Chr7:69272863-69272882 None:intergenic 25.0%
! TATTGTCTTAAATGCAACTT+GGG - Chr7:69271187-69271206 MsG0780039805.01.T01:CDS 25.0%
! TGACAAATATTCTATCATGT+CGG - Chr7:69272886-69272905 MsG0780039805.01.T01:CDS 25.0%
! TGTGAATTGTGAAAAATTGA+AGG + Chr7:69271090-69271109 None:intergenic 25.0%
!! TTCTAATCTCACTTTGTTTA+TGG - Chr7:69273100-69273119 MsG0780039805.01.T01:intron 25.0%
!! TTTTGTTAAACTTCCTTGAT+CGG - Chr7:69273425-69273444 MsG0780039805.01.T01:five_prime_UTR 25.0%
!!! ATTGGACATGTATTTTGAAA+CGG - Chr7:69272543-69272562 MsG0780039805.01.T01:CDS 25.0%
!!! CACTTAGTTTATTTTCATGT+TGG + Chr7:69271648-69271667 None:intergenic 25.0%
!!! GTTGTTGTTGTTGTTTAATT+TGG - Chr7:69272022-69272041 MsG0780039805.01.T01:intron 25.0%
!!! TATATTGATGGAGAGTTTTT+TGG - Chr7:69271463-69271482 MsG0780039805.01.T01:intron 25.0%
AAATAAGTGAAAACCCATGA+AGG + Chr7:69271025-69271044 None:intergenic 30.0%
AACACCTATAGTAGAAAAGA+TGG - Chr7:69271758-69271777 MsG0780039805.01.T01:intron 30.0%
AATAGAGTTAACCCTAAAAG+GGG + Chr7:69271117-69271136 None:intergenic 30.0%
AATCTTTGAACATGAGCTAA+GGG - Chr7:69272061-69272080 MsG0780039805.01.T01:intron 30.0%
ACCATCTCTAAGTTATACAA+TGG - Chr7:69273208-69273227 MsG0780039805.01.T01:CDS 30.0%
ATAGTGCACATTGCAAAAAT+TGG - Chr7:69272525-69272544 MsG0780039805.01.T01:CDS 30.0%
ATATAAGAATGGAGAATTGC+AGG - Chr7:69273133-69273152 MsG0780039805.01.T01:intron 30.0%
ATTATGTAAGGAGAGTAGAT+CGG - Chr7:69271829-69271848 MsG0780039805.01.T01:intron 30.0%
ATTGAAGGGTGAAATTGAAA+TGG + Chr7:69271075-69271094 None:intergenic 30.0%
CTAAGTTATACAATGGCTTT+GGG - Chr7:69273215-69273234 MsG0780039805.01.T01:CDS 30.0%
GAAAACCTCTAGATTATGTA+AGG - Chr7:69271817-69271836 MsG0780039805.01.T01:intron 30.0%
GACATGATAGAATATTTGTC+AGG + Chr7:69272887-69272906 None:intergenic 30.0%
GATGTGTGGTAAGATTAAAT+GGG - Chr7:69271693-69271712 MsG0780039805.01.T01:intron 30.0%
TCTAAGTTATACAATGGCTT+TGG - Chr7:69273214-69273233 MsG0780039805.01.T01:CDS 30.0%
TTAGGTTAACATTATCACCA+AGG + Chr7:69271591-69271610 None:intergenic 30.0%
TTGAAGGGTGAAATTGAAAT+GGG + Chr7:69271074-69271093 None:intergenic 30.0%
TTTGTTAAACTTCCTTGATC+GGG - Chr7:69273426-69273445 MsG0780039805.01.T01:five_prime_UTR 30.0%
! AACTCTTTCCACTTCTTTTT+AGG + Chr7:69272793-69272812 None:intergenic 30.0%
! AATTCACAAAAACCCCTTTT+AGG - Chr7:69271102-69271121 MsG0780039805.01.T01:intron 30.0%
! ATTCACAAAAACCCCTTTTA+GGG - Chr7:69271103-69271122 MsG0780039805.01.T01:intron 30.0%
! TTTACAAATTGCTTTCGAGT+AGG - Chr7:69272949-69272968 MsG0780039805.01.T01:intron 30.0%
!! CTTGGACATGTATTTTGAAA+CGG + Chr7:69272322-69272341 None:intergenic 30.0%
!! TAGAAAAGATGGTGGAAATT+AGG - Chr7:69271769-69271788 MsG0780039805.01.T01:intron 30.0%
!! TTTGTTTATGAAGGGTACTA+AGG - Chr7:69271294-69271313 MsG0780039805.01.T01:intron 30.0%
!!! ACGTTGTTTGAGTTGAATTT+TGG + Chr7:69270957-69270976 None:intergenic 30.0%
!!! CGTTGTTTGAGTTGAATTTT+GGG + Chr7:69270956-69270975 None:intergenic 30.0%
!!! TTTGAGTTGAATTTTGGGTT+GGG + Chr7:69270951-69270970 None:intergenic 30.0%
AACATTAGAGAGAGAGAGTT+AGG - Chr7:69271733-69271752 MsG0780039805.01.T01:intron 35.0%
AATACTGAAGATGACCAGAT+TGG - Chr7:69272846-69272865 MsG0780039805.01.T01:CDS 35.0%
ACAGTGTGGATTCTCAAATA+CGG - Chr7:69271324-69271343 MsG0780039805.01.T01:intron 35.0%
ACATTAGAGAGAGAGAGTTA+GGG - Chr7:69271734-69271753 MsG0780039805.01.T01:intron 35.0%
ACCTATAGTAGAAAAGATGG+TGG - Chr7:69271761-69271780 MsG0780039805.01.T01:intron 35.0%
ACTCTCCTTACATAATCTAG+AGG + Chr7:69271825-69271844 None:intergenic 35.0%
ACTTCGTCTCATACAACATT+AGG + Chr7:69271609-69271628 None:intergenic 35.0%
AGTAAACATATGAAAGCTGG+AGG + Chr7:69272976-69272995 None:intergenic 35.0%
AGTAGTCAAATCACTAGAGA+TGG - Chr7:69271858-69271877 MsG0780039805.01.T01:intron 35.0%
ATCAATATAGAGCTGAGGAA+AGG + Chr7:69271452-69271471 None:intergenic 35.0%
ATCTTTGAACATGAGCTAAG+GGG - Chr7:69272062-69272081 MsG0780039805.01.T01:intron 35.0%
ATTGAAGACCACATTGGATA+AGG - Chr7:69271249-69271268 MsG0780039805.01.T01:intron 35.0%
CATGTTCAAAGATTCCATCA+GGG + Chr7:69272055-69272074 None:intergenic 35.0%
CTAATCAATCAATGTTGCCT+TGG - Chr7:69271571-69271590 MsG0780039805.01.T01:intron 35.0%
GAATCTTTGAACATGAGCTA+AGG - Chr7:69272060-69272079 MsG0780039805.01.T01:intron 35.0%
GCCATTGTATAACTTAGAGA+TGG + Chr7:69273212-69273231 None:intergenic 35.0%
GGATGTGTGGTAAGATTAAA+TGG - Chr7:69271692-69271711 MsG0780039805.01.T01:intron 35.0%
GTCTTTGTGTGGTACAATAT+TGG - Chr7:69271547-69271566 MsG0780039805.01.T01:intron 35.0%
TAACGGTCAAAATTGTGCAT+TGG + Chr7:69272363-69272382 None:intergenic 35.0%
TCAACTGGGTCAAGTAATAT+GGG - Chr7:69272584-69272603 MsG0780039805.01.T01:CDS 35.0%
TCATGTTCAAAGATTCCATC+AGG + Chr7:69272056-69272075 None:intergenic 35.0%
TGAAGGGTGAAATTGAAATG+GGG + Chr7:69271073-69271092 None:intergenic 35.0%
TGCAGTAAACATATGAAAGC+TGG + Chr7:69272979-69272998 None:intergenic 35.0%
TGTAACAACCTTATCCAATG+TGG + Chr7:69271260-69271279 None:intergenic 35.0%
TTTCCTCAGCTCTATATTGA+TGG - Chr7:69271451-69271470 MsG0780039805.01.T01:intron 35.0%
! AAATTAGGCTTAGGTGGTTT+TGG - Chr7:69271784-69271803 MsG0780039805.01.T01:intron 35.0%
! ATACGGTTGTGCAAATTTTG+AGG - Chr7:69271341-69271360 MsG0780039805.01.T01:intron 35.0%
! CAAGGCAACATTGATTGATT+AGG + Chr7:69271573-69271592 None:intergenic 35.0%
! TCAAACCTCTTTTCCTTCAT+GGG - Chr7:69271009-69271028 MsG0780039805.01.T01:CDS 35.0%
! TCACATTTTACATCTGAGCT+AGG - Chr7:69272641-69272660 MsG0780039805.01.T01:CDS 35.0%
! TCCACCATCTTTTCTACTAT+AGG + Chr7:69271765-69271784 None:intergenic 35.0%
!! TACTTGTTTCTGTCTTTGTG+TGG - Chr7:69271536-69271555 MsG0780039805.01.T01:intron 35.0%
!!! ATTGATGGAGAGTTTTTTGG+TGG - Chr7:69271466-69271485 MsG0780039805.01.T01:intron 35.0%
!!! GACATGTATTTTGAAACGGA+GGG - Chr7:69272547-69272566 MsG0780039805.01.T01:CDS 35.0%
!!! GACATGTATTTTGAAACGGA+GGG + Chr7:69272566-69272547 None:intergenic 35.0%
!!! GTTTGAGTTGAATTTTGGGT+TGG + Chr7:69270952-69270971 None:intergenic 35.0%
AACTAAGTGTAGCAGAGATG+AGG - Chr7:69271659-69271678 MsG0780039805.01.T01:intron 40.0%
AGTATGTGTCAGAGTCAACT+GGG - Chr7:69272570-69272589 MsG0780039805.01.T01:CDS 40.0%
AGTCAAATCACTAGAGATGG+AGG - Chr7:69271861-69271880 MsG0780039805.01.T01:intron 40.0%
ATATAGAGCTGAGGAAAGGT+AGG + Chr7:69271448-69271467 None:intergenic 40.0%
CTAAAACTAACAGTGGCACT+TGG - Chr7:69270712-69270731 MsG0780039805.01.T01:three_prime_UTR 40.0%
CTTGGAAAGAGAATTGCGAT+TGG - Chr7:69270730-69270749 MsG0780039805.01.T01:three_prime_UTR 40.0%
GAAAACCCATGAAGGAAAAG+AGG + Chr7:69271017-69271036 None:intergenic 40.0%
GAAGGGTGAAATTGAAATGG+GGG + Chr7:69271072-69271091 None:intergenic 40.0%
GACTGAAGGAATATTCCAGT+TGG - Chr7:69271422-69271441 MsG0780039805.01.T01:intron 40.0%
GTATTTGAGAATCCACACTG+TGG + Chr7:69271325-69271344 None:intergenic 40.0%
GTCAACTAGGTCATCTATTG+CGG + Chr7:69272112-69272131 None:intergenic 40.0%
GTCAACTGGGTCAAGTAATA+TGG - Chr7:69272583-69272602 MsG0780039805.01.T01:CDS 40.0%
GTTATGCTCATGAGCAAATG+AGG + Chr7:69273190-69273209 None:intergenic 40.0%
GTTGTATGAGACGAAGTCTT+GGG - Chr7:69271612-69271631 MsG0780039805.01.T01:intron 40.0%
TCAACTAGGTCATCTATTGC+GGG + Chr7:69272111-69272130 None:intergenic 40.0%
TCCAATGTGGTCTTCAATTC+AGG + Chr7:69271247-69271266 None:intergenic 40.0%
TCCTGAATTGAAGACCACAT+TGG - Chr7:69271243-69271262 MsG0780039805.01.T01:intron 40.0%
TCTCCATCAATATAGAGCTG+AGG + Chr7:69271457-69271476 None:intergenic 40.0%
TGTAGTAGTTATCCCGATCA+AGG + Chr7:69273441-69273460 None:intergenic 40.0%
TGTTGTATGAGACGAAGTCT+TGG - Chr7:69271611-69271630 MsG0780039805.01.T01:intron 40.0%
TTGAGAACAAGAGATGAACG+AGG + Chr7:69270908-69270927 None:intergenic 40.0%
! AAGCCTTATCCCACTAAATG+GGG + Chr7:69272001-69272020 None:intergenic 40.0%
! ACTAAGGATTTTCCACAGTG+TGG - Chr7:69271310-69271329 MsG0780039805.01.T01:intron 40.0%
! AGGTTGTTGTTGTTCCAGAA+AGG + Chr7:69270868-69270887 None:intergenic 40.0%
! AGTGGAAGCATGATGTTGTT+GGG + Chr7:69270841-69270860 None:intergenic 40.0%
! CAAGCCTTATCCCACTAAAT+GGG + Chr7:69272002-69272021 None:intergenic 40.0%
! CTCAAACCTCTTTTCCTTCA+TGG - Chr7:69271008-69271027 MsG0780039805.01.T01:CDS 40.0%
! TGTTGTTGTTCCAGAAAGGT+GGG + Chr7:69270864-69270883 None:intergenic 40.0%
! TTGTTGTTGTTCCAGAAAGG+TGG + Chr7:69270865-69270884 None:intergenic 40.0%
!! AATTTGGTTTGCTTCCCTGA+TGG - Chr7:69272038-69272057 MsG0780039805.01.T01:intron 40.0%
!! AGATGGTGGAAATTAGGCTT+AGG - Chr7:69271775-69271794 MsG0780039805.01.T01:intron 40.0%
!!! GGACATGTATTTTGAAACGG+AGG - Chr7:69272546-69272565 MsG0780039805.01.T01:CDS 40.0%
!!! GGACATGTATTTTGAAACGG+AGG + Chr7:69272565-69272546 None:intergenic 40.0%
!!! GTTGAATTTTGGGTTGGGAA+TGG + Chr7:69270946-69270965 None:intergenic 40.0%
AGAACAAGAGATGAACGAGG+TGG + Chr7:69270905-69270924 None:intergenic 45.0%
AGGATGTTGTGTTGGATGTG+TGG - Chr7:69271679-69271698 MsG0780039805.01.T01:intron 45.0%
AGTACCAGAACAGCGAATTG+TGG + Chr7:69270987-69271006 None:intergenic 45.0%
ATGTAGCTGACCCCATTTAG+TGG - Chr7:69271988-69272007 MsG0780039805.01.T01:intron 45.0%
ATTGCAGGAACTAGTGGAGA+AGG - Chr7:69273148-69273167 MsG0780039805.01.T01:intron 45.0%
CAGAGATGAGGATGTTGTGT+TGG - Chr7:69271671-69271690 MsG0780039805.01.T01:intron 45.0%
CATGTGTGAAGTGGTTGACT+TGG + Chr7:69272340-69272359 None:intergenic 45.0%
CCATTTAGTGGGATAAGGCT+TGG - Chr7:69272000-69272019 MsG0780039805.01.T01:intron 45.0%
CTGGGTCAAGTAATATGGGA+CGG - Chr7:69272588-69272607 MsG0780039805.01.T01:CDS 45.0%
GACAATGATATGTTGCGCCA+GGG - Chr7:69271400-69271419 MsG0780039805.01.T01:intron 45.0%
GAGTATGTGTCAGAGTCAAC+TGG - Chr7:69272569-69272588 MsG0780039805.01.T01:CDS 45.0%
GGGTTGGGAATGGAAAATTG+TGG + Chr7:69270936-69270955 None:intergenic 45.0%
GGTGGATGTGATATCACTGT+TGG - Chr7:69271484-69271503 MsG0780039805.01.T01:intron 45.0%
GTCAAGTAATATGGGACGGA+GGG - Chr7:69272592-69272611 MsG0780039805.01.T01:CDS 45.0%
GTTGTTGGGTGCAAAGAGAA+TGG + Chr7:69270827-69270846 None:intergenic 45.0%
TCATGAGCAAATGAGGCTTC+AGG + Chr7:69273183-69273202 None:intergenic 45.0%
TGACCCCATTTAGTGGGATA+AGG - Chr7:69271995-69272014 MsG0780039805.01.T01:intron 45.0%
TGGAATATTCCTTCAGTCCC+TGG + Chr7:69271420-69271439 None:intergenic 45.0%
TGGAGAATTGCAGGAACTAG+TGG - Chr7:69273142-69273161 MsG0780039805.01.T01:intron 45.0%
TGGTGGAAATTAGGCTTAGG+TGG - Chr7:69271778-69271797 MsG0780039805.01.T01:intron 45.0%
TGTAGCTGACCCCATTTAGT+GGG - Chr7:69271989-69272008 MsG0780039805.01.T01:intron 45.0%
! CACTTTGTTTATGGCTGCAG+AGG - Chr7:69273109-69273128 MsG0780039805.01.T01:intron 45.0%
! CCAAGCCTTATCCCACTAAA+TGG + Chr7:69272003-69272022 None:intergenic 45.0%
! GAGTGGAAGCATGATGTTGT+TGG + Chr7:69270842-69270861 None:intergenic 45.0%
! GCTGCAGAGGCATATAAGAA+TGG - Chr7:69273122-69273141 MsG0780039805.01.T01:intron 45.0%
ACCAGAACAGCGAATTGTGG+TGG + Chr7:69270984-69271003 None:intergenic 50.0%
CTAGGTCATCTATTGCGGGA+CGG + Chr7:69272107-69272126 None:intergenic 50.0%
GGACAATGATATGTTGCGCC+AGG - Chr7:69271399-69271418 MsG0780039805.01.T01:intron 50.0%
GGTCAAGTAATATGGGACGG+AGG - Chr7:69272591-69272610 MsG0780039805.01.T01:CDS 50.0%
TATGGGACGGAGGGAGTAAT+AGG - Chr7:69272601-69272620 MsG0780039805.01.T01:CDS 50.0%
TCCACCACAATTCGCTGTTC+TGG - Chr7:69270980-69270999 MsG0780039805.01.T01:exon 50.0%
TTGTTCCAGAAAGGTGGGAG+TGG + Chr7:69270859-69270878 None:intergenic 50.0%
! GTGCATTGGCATGTGTGAAG+TGG + Chr7:69272349-69272368 None:intergenic 50.0%
AGGTGGAAGAGACAGTGACG+AGG + Chr7:69270888-69270907 None:intergenic 55.0%
CTGAGGAAAGGTAGGCCAAC+TGG + Chr7:69271440-69271459 None:intergenic 55.0%
GTCATCTATTGCGGGACGGA+GGG + Chr7:69272103-69272122 None:intergenic 55.0%
TATGTTGCGCCAGGGACTGA+AGG - Chr7:69271408-69271427 MsG0780039805.01.T01:intron 55.0%
TGCTTCCACTCCCACCTTTC+TGG - Chr7:69270851-69270870 MsG0780039805.01.T01:three_prime_UTR 55.0%
GGTCATCTATTGCGGGACGG+AGG + Chr7:69272104-69272123 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
Chr7 gene 69270694 69273476 69270694 ID=MsG0780039805.01;Name=MsG0780039805.01
Chr7 mRNA 69270694 69273476 69270694 ID=MsG0780039805.01.T01;Parent=MsG0780039805.01;Name=MsG0780039805.01.T01;_AED=0.41;_eAED=0.48;_QI=106|0.33|0.5|1|0|0|4|292|296
Chr7 exon 69270694 69271041 69270694 ID=MsG0780039805.01.T01:exon:12439;Parent=MsG0780039805.01.T01
Chr7 exon 69271143 69271255 69271143 ID=MsG0780039805.01.T01:exon:12438;Parent=MsG0780039805.01.T01
Chr7 exon 69272415 69272934 69272415 ID=MsG0780039805.01.T01:exon:12437;Parent=MsG0780039805.01.T01
Chr7 exon 69273169 69273476 69273169 ID=MsG0780039805.01.T01:exon:12436;Parent=MsG0780039805.01.T01
Chr7 five_prime_UTR 69273371 69273476 69273371 ID=MsG0780039805.01.T01:five_prime_utr;Parent=MsG0780039805.01.T01
Chr7 CDS 69273169 69273370 69273169 ID=MsG0780039805.01.T01:cds;Parent=MsG0780039805.01.T01
Chr7 CDS 69272415 69272934 69272415 ID=MsG0780039805.01.T01:cds;Parent=MsG0780039805.01.T01
Chr7 CDS 69271143 69271255 69271143 ID=MsG0780039805.01.T01:cds;Parent=MsG0780039805.01.T01
Chr7 CDS 69270986 69271041 69270986 ID=MsG0780039805.01.T01:cds;Parent=MsG0780039805.01.T01
Chr7 three_prime_UTR 69270694 69270985 69270694 ID=MsG0780039805.01.T01:three_prime_utr;Parent=MsG0780039805.01.T01
Gene Sequence

>MsG0780039805.01.T01

ATGTCTTTCAGTTCGTGCGTTAAACCATTCTCTTTGCACCCAACAACATCATGCTTCCACTCCCACCTTTCTGGAACAACAACAACCTCGTCACTGTCTCTTCCACCTCGTTCATCTCTTGTTCTCAAACAAACCACAATTTTCCATTCCCAACCCAAAATTCAACTCAAACAACGTTTTTCCACCACAATTCGCTGTTCTGCTTTGACTCCTGAATTGAAGACCACATTGGATAAGGTTGTTACATCAAACAAAATAGTTTTGTTTATGAAGGGTACTAAGGATTTTCCACAGTGTGGATTCTCAAATACGGTTGTGCAAATTTTGAGGTCTTTGAATGCGTCTTTTGAAACGATAAACATATTGGACAATGATATGTTGCGCCAGGGACTGAAGGAATATTCCAGTTGGCCTACCTTTCCTCAGCTCTATATTGATGGAGAGTTTTTTGGTGGATGTGATATCACTGTTGGTATATGTCCTCTTGAATTTCTGATTTTCATACTTGTTTCTGTCTTTGTGTGGTACAATATTGGCCTAATCAATCAATGTTGCCTTGGTGATAATGTTAACCTAATGTTGTATGAGACGAAGTCTTGGGCTGTCAAGAACCAACATGAAAATAAACTAAGTGTAGCAGAGATGAGGATGTTGTGTTGGATGTGTGGTAAGATTAAATGGGATATGATTAGAAATGATAACATTAGAGAGAGAGAGTTAGGAGATGTTTTTTTATCAGCTATTGCAAAATCGATGTTTACAAATTGCTTTCGAGTAGGTCCTCCAGCTTTCATATGTTTACTGCATGATGTTACTATTGACTGCATAACAATCAAGGCATATAAGAATGGAGAATTGCAGGAACTAGTGGAGAAGGCAATGTGCTCCTGA

Protein sequence

>MsG0780039805.01.T01

MSFSSCVKPFSLHPTTSCFHSHLSGTTTTSSLSLPPRSSLVLKQTTIFHSQPKIQLKQRFSTTIRCSALTPELKTTLDKVVTSNKIVLFMKGTKDFPQCGFSNTVVQILRSLNASFETINILDNDMLRQGLKEYSSWPTFPQLYIDGEFFGGCDITVGICPLEFLIFILVSVFVWYNIGLINQCCLGDNVNLMLYETKSWAVKNQHENKLSVAEMRMLCWMCGKIKWDMIRNDNIRERELGDVFLSAIAKSMFTNCFRVGPPAFICLLHDVTIDCITIKAYKNGELQELVEKAMCS*