AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380017532.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380017532.01.T01 MTR_3g108700 81.323 257 11 1 1 257 49 268 9.67e-135 399
MsG0380017532.01.T01 MTR_3g108700 77.528 178 10 2 258 405 418 595 1.19e-89 283
MsG0380017532.01.T01 MTR_1g088420 30.980 255 121 4 3 257 74 273 1.21e-29 119
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380017532.01.T01 AT5G24850 53.252 246 61 3 15 257 48 242 9.35e-77 248
MsG0380017532.01.T01 AT5G24850 56.497 177 45 4 258 403 392 567 3.99e-54 189
MsG0380017532.01.T01 AT2G47590 34.146 205 81 3 53 257 120 270 2.16e-29 119

Find 114 sgRNAs with CRISPR-Local

Find 323 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTTCTCTAGTTAAAGCTTA+TGG 0.210011 3:-97609554 MsG0380017532.01.T01:CDS
TATGATCCATGTTCTAATTA+TGG 0.211165 3:-97606649 MsG0380017532.01.T01:CDS
GCCCCAAACAAACTGTAATT+TGG 0.214415 3:+97609264 None:intergenic
ACCACTCCTCTTGGTGTTAT+TGG 0.215639 3:+97610566 None:intergenic
TTCCTTCCTAGTTCGTGATA+TGG 0.276629 3:-97606722 MsG0380017532.01.T01:intron
TCATAGACACTTACTTGTTT+TGG 0.288360 3:+97606258 None:intergenic
AATTATGGAAACTGGACTTA+TGG 0.288686 3:-97606634 MsG0380017532.01.T01:CDS
ACAATTTCTCCTTGAATGTT+TGG 0.290513 3:-97609651 MsG0380017532.01.T01:CDS
CAAATTGTGCCTCTCAAGTT+TGG 0.291317 3:-97606026 MsG0380017532.01.T01:CDS
GATGGAACAGGAGATAAATT+TGG 0.292868 3:-97605929 MsG0380017532.01.T01:exon
ACCCCAAATTACAGTTTGTT+TGG 0.297200 3:-97609267 MsG0380017532.01.T01:CDS
TAGAAACGATCTCAGAGTTT+TGG 0.300537 3:-97610520 MsG0380017532.01.T01:CDS
CCCCAAATTACAGTTTGTTT+GGG 0.309463 3:-97609266 MsG0380017532.01.T01:CDS
TATGCAACATATTCACCTTC+TGG 0.320195 3:+97606116 None:intergenic
TTTGCAACCACTTACCATTT+CGG 0.320810 3:-97610423 MsG0380017532.01.T01:CDS
ATGGTTTGAGACATGTCTTT+TGG 0.325858 3:-97606674 MsG0380017532.01.T01:CDS
AGATGCTGAGGGTTCGGATT+TGG 0.332286 3:+97610671 None:intergenic
CCCCAAACAAACTGTAATTT+GGG 0.334412 3:+97609265 None:intergenic
CGACTAGTAGACATAATAAT+GGG 0.355841 3:-97606001 MsG0380017532.01.T01:CDS
TCCTTCCTAGTTCGTGATAT+GGG 0.370362 3:-97606721 MsG0380017532.01.T01:intron
CATGTTCTAATTATGGAAAC+TGG 0.376771 3:-97606642 MsG0380017532.01.T01:CDS
CGAAGAAGATGCTGAGGGTT+CGG 0.386786 3:+97610665 None:intergenic
GAAGTGACTGAAACTTTATT+CGG 0.393889 3:-97610294 MsG0380017532.01.T01:intron
AAGTGTACCTTTGGAATGTT+TGG 0.395594 3:+97610589 None:intergenic
GAGGAAGAATCTAATGAAAC+GGG 0.397025 3:-97609621 MsG0380017532.01.T01:CDS
TGGACTACTTCAATTTCAAC+GGG 0.405114 3:+97605744 None:intergenic
CTTCTTCTGAATCAGGAGTC+GGG 0.411886 3:-97606314 MsG0380017532.01.T01:intron
TCCTGGAGAGATGGTTGTAC+AGG 0.423794 3:-97607114 MsG0380017532.01.T01:CDS
ACGACTAGTAGACATAATAA+TGG 0.424104 3:-97606002 MsG0380017532.01.T01:CDS
GTGAGATACAGTGATATAAC+AGG 0.431367 3:+97605878 None:intergenic
CGAGGATCAATACAATAAAC+AGG 0.433338 3:+97610450 None:intergenic
CGAAATTGAGTATAAACATC+TGG 0.434912 3:+97609193 None:intergenic
CGTACCTTTACCACTCCTCT+TGG 0.440611 3:+97610557 None:intergenic
GTACCATCTGACGGATCCGC+TGG 0.440891 3:-97609313 MsG0380017532.01.T01:CDS
GGCAAACAAGTGACATCAAA+AGG 0.455437 3:+97609214 None:intergenic
TGTTATTGGAAGTGTACCTT+TGG 0.459247 3:+97610580 None:intergenic
TAGGATAGGCTTTGTTTACC+AGG 0.459368 3:-97605800 MsG0380017532.01.T01:three_prime_UTR
ATGCAACATATTCACCTTCT+GGG 0.459620 3:+97606117 None:intergenic
CTGAAATATCGGTCTTCTCT+AGG 0.465039 3:+97606285 None:intergenic
AGAAACTTGTAGCGAAGAGC+TGG 0.468024 3:-97609377 MsG0380017532.01.T01:CDS
AGAGCTAGACTCTAACGAAA+TGG 0.468049 3:-97610625 MsG0380017532.01.T01:CDS
TGAGGAAGAATCTAATGAAA+CGG 0.480156 3:-97609622 MsG0380017532.01.T01:CDS
TCAAGTCATCCAAACATTCA+AGG 0.483691 3:+97609642 None:intergenic
AGAGAAGGAAGAATATCTTC+AGG 0.484237 3:+97609569 None:intergenic
AGATCTTCTAAATGATAGAT+AGG 0.497947 3:-97605819 MsG0380017532.01.T01:three_prime_UTR
ATGAAACTCTCTACAAGGCT+TGG 0.505319 3:-97610494 MsG0380017532.01.T01:CDS
CCATCATCCTCAGTGGGATG+TGG 0.510308 3:-97605842 MsG0380017532.01.T01:three_prime_UTR
CCCTGTACAACCATCTCTCC+AGG 0.511372 3:+97607113 None:intergenic
GGAAACTGGACTTATGGATC+AGG 0.511438 3:-97606628 MsG0380017532.01.T01:intron
TGGAAATCCGAAATGGTAAG+TGG 0.513053 3:+97610416 None:intergenic
TGCTGAGGGTTCGGATTTGG+TGG 0.513186 3:+97610674 None:intergenic
ATAGACGAAATGAAAGAAGA+TGG 0.513267 3:-97605947 MsG0380017532.01.T01:CDS
TTCGTGATATGGGCATAGAT+TGG 0.517775 3:-97606711 MsG0380017532.01.T01:CDS
ATTTCGTTAGAGTCTAGCTC+TGG 0.518530 3:+97610627 None:intergenic
CCACATCCCACTGAGGATGA+TGG 0.519505 3:+97605842 None:intergenic
CTTAATTTGCTTATTCAACA+TGG 0.522203 3:-97609596 MsG0380017532.01.T01:CDS
CCATAAGCTTTAACTAGAGA+AGG 0.528104 3:+97609554 None:intergenic
GGATAATGAAACTCTCTACA+AGG 0.529318 3:-97610499 MsG0380017532.01.T01:CDS
TACCATCTGACGGATCCGCT+GGG 0.531631 3:-97609312 MsG0380017532.01.T01:CDS
GAAATGAAAGAAGATGGAAC+AGG 0.535065 3:-97605941 MsG0380017532.01.T01:CDS
TTATTTGAATCCTGGAGAGA+TGG 0.539657 3:-97607123 MsG0380017532.01.T01:CDS
AACACCAAGAGGAGTGGTAA+AGG 0.541108 3:-97610561 MsG0380017532.01.T01:CDS
TATATATGGTAACTTGAGCA+TGG 0.551997 3:-97605689 MsG0380017532.01.T01:three_prime_UTR
ATGGGCATAGATTGGCGCAT+GGG 0.552805 3:-97606703 MsG0380017532.01.T01:CDS
CAGTTTCCATAATTAGAACA+TGG 0.556417 3:+97606643 None:intergenic
ATGGACTACTTCAATTTCAA+CGG 0.557633 3:+97605743 None:intergenic
GCCCCAGCGGATCCGTCAGA+TGG 0.561396 3:+97609310 None:intergenic
CAACAAATGTCTTCAACAAG+TGG 0.563963 3:-97609338 MsG0380017532.01.T01:CDS
CTCTAACGAAATGGAAAGTG+TGG 0.567651 3:-97610616 MsG0380017532.01.T01:CDS
TGACGAATGTATAAATTACC+AGG 0.571431 3:+97606047 None:intergenic
TTGAATGTTTGGATGACTTG+AGG 0.576608 3:-97609640 MsG0380017532.01.T01:CDS
ATCTGACGGATCCGCTGGGG+CGG 0.582363 3:-97609308 MsG0380017532.01.T01:CDS
TTTGAGATTGCTCTTAACTG+TGG 0.587745 3:+97606086 None:intergenic
AATAATGGGGACAAGTCACT+TGG 0.587812 3:-97605987 MsG0380017532.01.T01:CDS
ATGAAACAAGAATATACCTC+CGG 0.589877 3:+97610389 None:intergenic
TCCAATAACACCAAGAGGAG+TGG 0.596699 3:-97610567 MsG0380017532.01.T01:CDS
ATTGGCGCATGGGAGCAGAA+TGG 0.597062 3:-97606693 MsG0380017532.01.T01:CDS
GCGAAGAGCTGGATGTTGAA+AGG 0.601181 3:-97609366 MsG0380017532.01.T01:CDS
GGAACAGGAGATAAATTTGG+AGG 0.601624 3:-97605926 MsG0380017532.01.T01:exon
CCCAAATTACAGTTTGTTTG+GGG 0.604032 3:-97609265 MsG0380017532.01.T01:CDS
CAAGAGGAGTGGTAAAGGTA+CGG 0.605224 3:-97610556 MsG0380017532.01.T01:CDS
AAGTCACTTGGTGCAAGAAG+AGG 0.607529 3:-97605975 MsG0380017532.01.T01:CDS
TGCATGCCATCATCCTCAGT+GGG 0.609968 3:-97605848 MsG0380017532.01.T01:three_prime_UTR
GAGATAAATTTGGAGGAACA+AGG 0.612614 3:-97605919 MsG0380017532.01.T01:exon
CTAGTCGTTCCAAACTTGAG+AGG 0.615978 3:+97606017 None:intergenic
CCTGGAGAGATGGTTGTACA+GGG 0.618293 3:-97607113 MsG0380017532.01.T01:intron
CATTGACGAAGAAGATGCTG+AGG 0.621299 3:+97610659 None:intergenic
GAAACTGAGATGTCCACACC+GGG 0.627005 3:-97610333 MsG0380017532.01.T01:CDS
GACTACTTCAATTTCAACGG+GGG 0.642001 3:+97605746 None:intergenic
TTCTAAATGATAGATAGGAT+AGG 0.644756 3:-97605814 MsG0380017532.01.T01:three_prime_UTR
TATGGGCATAGATTGGCGCA+TGG 0.647937 3:-97606704 MsG0380017532.01.T01:CDS
AGAAGCTGATGCCGCCCCAG+CGG 0.648296 3:+97609297 None:intergenic
AAGGTGAATATGTTGCATAC+TGG 0.650078 3:-97606112 MsG0380017532.01.T01:CDS
AAACAAACTGTAATTTGGGG+TGG 0.651990 3:+97609269 None:intergenic
GAACAAGGAAATTAGAAACA+TGG 0.662182 3:-97605904 MsG0380017532.01.T01:three_prime_UTR
ATGCATGCCATCATCCTCAG+TGG 0.664973 3:-97605849 MsG0380017532.01.T01:three_prime_UTR
ATCGTCACGGTGGTACATAG+TGG 0.665558 3:+97609240 None:intergenic
ACCATCTGACGGATCCGCTG+GGG 0.671352 3:-97609311 MsG0380017532.01.T01:CDS
TGGCAAACCAAACATTCCAA+AGG 0.672634 3:-97610596 MsG0380017532.01.T01:CDS
TGAAACTGAGATGTCCACAC+CGG 0.673959 3:-97610334 MsG0380017532.01.T01:CDS
TAAGTGGTTGCAAATAGTCG+AGG 0.676581 3:+97610432 None:intergenic
GCACAAACATATGACCCAGA+AGG 0.677856 3:-97606131 MsG0380017532.01.T01:CDS
ACACTTCCAATAACACCAAG+AGG 0.681084 3:-97610572 MsG0380017532.01.T01:CDS
CCCAAACAAACTGTAATTTG+GGG 0.681742 3:+97609266 None:intergenic
CATCAAAAGGAAGATCGTCA+CGG 0.693138 3:+97609227 None:intergenic
GTAAAGGTACGGCAATCGTG+TGG 0.694715 3:-97610545 MsG0380017532.01.T01:CDS
ATTGACGAAGAAGATGCTGA+GGG 0.697365 3:+97610660 None:intergenic
CAAGTGGTAGTACCATCTGA+CGG 0.705025 3:-97609322 MsG0380017532.01.T01:CDS
AGATACAGTGATATAACAGG+TGG 0.706516 3:+97605881 None:intergenic
GACTAGTAGACATAATAATG+GGG 0.715600 3:-97606000 MsG0380017532.01.T01:CDS
AGGAAGAATCTAATGAAACG+GGG 0.715617 3:-97609620 MsG0380017532.01.T01:CDS
AAGATCTCCACATCCCACTG+AGG 0.735007 3:+97605835 None:intergenic
GGACTACTTCAATTTCAACG+GGG 0.746610 3:+97605745 None:intergenic
CAAAAGGAAGATCGTCACGG+TGG 0.770417 3:+97609230 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAATTACAATATAGAAA+TGG + Chr3:97610649-97610668 None:intergenic 10.0%
!!! ATTCAGTAAATTTTTAAATT+TGG - Chr3:97610182-97610201 MsG0380017532.01.T01:intron 10.0%
!!! TTTTAGACAAATTTTATATA+TGG - Chr3:97610667-97610686 MsG0380017532.01.T01:CDS 10.0%
!!! TTTTCCAATTAAAATAATTA+GGG - Chr3:97606270-97606289 MsG0380017532.01.T01:intron 10.0%
!!! TTTTTCCAATTAAAATAATT+AGG - Chr3:97606269-97606288 MsG0380017532.01.T01:intron 10.0%
!! AAATAAGATAAAATCAAGTA+TGG + Chr3:97607340-97607359 None:intergenic 15.0%
!! TAGATTTATATGGATTTATT+TGG - Chr3:97607232-97607251 MsG0380017532.01.T01:intron 15.0%
!! TTCATTGTTTAAAGAATTTA+TGG + Chr3:97610008-97610027 None:intergenic 15.0%
!! TTTAACTATAAATGTTATGT+TGG - Chr3:97607940-97607959 MsG0380017532.01.T01:intron 15.0%
!!! ATTAAATCTACATTTTCATT+TGG + Chr3:97608018-97608037 None:intergenic 15.0%
!!! GAATTACTTTAAAGAATTTA+TGG + Chr3:97609897-97609916 None:intergenic 15.0%
!!! TTTACCCTAATTATTTTAAT+TGG + Chr3:97606277-97606296 None:intergenic 15.0%
!! AACATTTAAATTTACCTAAC+AGG + Chr3:97606192-97606211 None:intergenic 20.0%
!! AACTTATTTAAGCTTATCTA+CGG - Chr3:97607258-97607277 MsG0380017532.01.T01:intron 20.0%
!! ATTATAACAAAAAGGTTCTA+TGG + Chr3:97609141-97609160 None:intergenic 20.0%
!! GACATATTAAAAAATCTACA+AGG + Chr3:97609853-97609872 None:intergenic 20.0%
!! GCATCAATTATCATAAAATT+TGG + Chr3:97606915-97606934 None:intergenic 20.0%
!! TAGACAGTTAAATAATTACA+CGG - Chr3:97608856-97608875 MsG0380017532.01.T01:intron 20.0%
!! TCCTAAATTAACTCATTATT+CGG + Chr3:97608068-97608087 None:intergenic 20.0%
!! TTTATTAACAGAAAGAAATG+TGG + Chr3:97609827-97609846 None:intergenic 20.0%
!!! GATTCAAATAATTTTTGTCT+TGG + Chr3:97609238-97609257 None:intergenic 20.0%
!!! TCACAATTTACTTTGAAATA+TGG - Chr3:97610141-97610160 MsG0380017532.01.T01:intron 20.0%
!!! TCTATTTTTGAAATTATTCC+CGG + Chr3:97606058-97606077 None:intergenic 20.0%
! AACAGACAATACTTTATCAA+AGG + Chr3:97608523-97608542 None:intergenic 25.0%
! AATTGTGTGCAACATAAAAT+AGG - Chr3:97608192-97608211 MsG0380017532.01.T01:intron 25.0%
! AGAAACACATTAATGTACTT+TGG + Chr3:97609523-97609542 None:intergenic 25.0%
! AGATCTTCTAAATGATAGAT+AGG - Chr3:97610551-97610570 MsG0380017532.01.T01:CDS 25.0%
! ATAATTAGGGTAAAAATGAG+AGG - Chr3:97606283-97606302 MsG0380017532.01.T01:CDS 25.0%
! ATGATAATTGATGCATCTTT+AGG - Chr3:97606921-97606940 MsG0380017532.01.T01:intron 25.0%
! CAAGATCTAAAAATATAGTG+TGG - Chr3:97608272-97608291 MsG0380017532.01.T01:intron 25.0%
! CATGTGTGTTTAGATTTATA+TGG - Chr3:97607222-97607241 MsG0380017532.01.T01:intron 25.0%
! CTAGAAATGTTCAGAAAAAT+TGG - Chr3:97609210-97609229 MsG0380017532.01.T01:CDS 25.0%
! GAAATTTAGTGACAAAGAAA+GGG - Chr3:97608753-97608772 MsG0380017532.01.T01:intron 25.0%
! GAATTAAAGAATGAATAGCT+TGG + Chr3:97608815-97608834 None:intergenic 25.0%
! GAATTAATGTTAGTCATGAT+GGG - Chr3:97607962-97607981 MsG0380017532.01.T01:intron 25.0%
! GACAAAAATTATTTGAATCC+TGG - Chr3:97609239-97609258 MsG0380017532.01.T01:CDS 25.0%
! GAGAATTTAGTAGAATAATG+AGG + Chr3:97608394-97608413 None:intergenic 25.0%
! GCAACATAAAATAGGAAAAA+GGG - Chr3:97608200-97608219 MsG0380017532.01.T01:intron 25.0%
! TATGATCCATGTTCTAATTA+TGG - Chr3:97609721-97609740 MsG0380017532.01.T01:intron 25.0%
! TATGGACAACATAATAATGT+TGG + Chr3:97609879-97609898 None:intergenic 25.0%
! TCCGAATAATGAGTTAATTT+AGG - Chr3:97608064-97608083 MsG0380017532.01.T01:intron 25.0%
! TGAATATCTTAATTAAGTCC+CGG + Chr3:97608254-97608273 None:intergenic 25.0%
! TGATAATTGATGCATCTTTA+GGG - Chr3:97606922-97606941 MsG0380017532.01.T01:intron 25.0%
! TGCAACATAAAATAGGAAAA+AGG - Chr3:97608199-97608218 MsG0380017532.01.T01:intron 25.0%
! TGTTTATACTCAATTTCGTA+AGG - Chr3:97607182-97607201 MsG0380017532.01.T01:intron 25.0%
! TTAAGGAAAGAAAAACTAAC+AGG - Chr3:97608782-97608801 MsG0380017532.01.T01:intron 25.0%
! TTATGGATCAGGTAAATATT+TGG - Chr3:97609753-97609772 MsG0380017532.01.T01:intron 25.0%
! TTCTAAATGATAGATAGGAT+AGG - Chr3:97610556-97610575 MsG0380017532.01.T01:CDS 25.0%
!! AATAAGCTAGTTTAGATTGA+TGG - Chr3:97606884-97606903 MsG0380017532.01.T01:intron 25.0%
!! CAATTTTTCTGAACATTTCT+AGG + Chr3:97609212-97609231 None:intergenic 25.0%
!! GCAGAATATATGAATACTTT+TGG - Chr3:97607884-97607903 MsG0380017532.01.T01:intron 25.0%
!! TACATTTTCATTTGGAGATA+AGG + Chr3:97608010-97608029 None:intergenic 25.0%
!! TAGATTGAAGGTGTATTATT+TGG + Chr3:97606564-97606583 None:intergenic 25.0%
!! TGTAGTCTTTATTTCTTTGT+AGG - Chr3:97609182-97609201 MsG0380017532.01.T01:intron 25.0%
!! TTTTTCATTGTTGAGTTCAA+AGG + Chr3:97607777-97607796 None:intergenic 25.0%
!!! AACTTCTTTGTTTGTTTTGT+TGG - Chr3:97606611-97606630 MsG0380017532.01.T01:intron 25.0%
!!! ATATGAATACTTTTGGAAGA+AGG - Chr3:97607891-97607910 MsG0380017532.01.T01:intron 25.0%
!!! CTTAATTTGCTTATTCAACA+TGG - Chr3:97606774-97606793 MsG0380017532.01.T01:intron 25.0%
!!! TTTTAAATTTGGTTCTGATG+TGG - Chr3:97610193-97610212 MsG0380017532.01.T01:intron 25.0%
AAACCCTGTGAAAATAAAGA+CGG + Chr3:97608924-97608943 None:intergenic 30.0%
AAAGAAAAAAGGAACTTTCC+TGG - Chr3:97610305-97610324 MsG0380017532.01.T01:CDS 30.0%
AACACACAATCTGTCAAAAA+AGG + Chr3:97609630-97609649 None:intergenic 30.0%
AATTATGGAAACTGGACTTA+TGG - Chr3:97609736-97609755 MsG0380017532.01.T01:intron 30.0%
ACAATTTCTCCTTGAATGTT+TGG - Chr3:97606719-97606738 MsG0380017532.01.T01:intron 30.0%
ACACACAATCTGTCAAAAAA+GGG + Chr3:97609629-97609648 None:intergenic 30.0%
ACACTAACACATTAGATTGA+AGG + Chr3:97606576-97606595 None:intergenic 30.0%
ACATGTGTAGGATTTACTAA+AGG - Chr3:97608336-97608355 MsG0380017532.01.T01:intron 30.0%
ACCTTCATGTTTACTCAAAA+AGG + Chr3:97608105-97608124 None:intergenic 30.0%
ACGACTAGTAGACATAATAA+TGG - Chr3:97610368-97610387 MsG0380017532.01.T01:CDS 30.0%
AGGTTTCTATCAGTCAAATA+TGG - Chr3:97608973-97608992 MsG0380017532.01.T01:intron 30.0%
AGTGAAGAAAAAGTCAATAC+AGG + Chr3:97609408-97609427 None:intergenic 30.0%
ATAGACGAAATGAAAGAAGA+TGG - Chr3:97610423-97610442 MsG0380017532.01.T01:CDS 30.0%
ATATATGGTAACTTGAGCAT+GGG - Chr3:97610682-97610701 MsG0380017532.01.T01:CDS 30.0%
ATGAAACAAGAATATACCTC+CGG + Chr3:97605984-97606003 None:intergenic 30.0%
ATGAAAGAATTATCCACTAC+AGG - Chr3:97609467-97609486 MsG0380017532.01.T01:intron 30.0%
CAGTTTCCATAATTAGAACA+TGG + Chr3:97609730-97609749 None:intergenic 30.0%
CATGTTCTAATTATGGAAAC+TGG - Chr3:97609728-97609747 MsG0380017532.01.T01:intron 30.0%
CCTTCATGTTTACTCAAAAA+GGG + Chr3:97608104-97608123 None:intergenic 30.0%
CGAAATTGAGTATAAACATC+TGG + Chr3:97607180-97607199 None:intergenic 30.0%
CGAAATTTAGTGACAAAGAA+AGG - Chr3:97608752-97608771 MsG0380017532.01.T01:intron 30.0%
CGACTAGTAGACATAATAAT+GGG - Chr3:97610369-97610388 MsG0380017532.01.T01:CDS 30.0%
CTTCATGTTTACTCAAAAAG+GGG + Chr3:97608103-97608122 None:intergenic 30.0%
GAACAAGGAAATTAGAAACA+TGG - Chr3:97610466-97610485 MsG0380017532.01.T01:CDS 30.0%
GAAGAAAAAGTAAGAGAGTA+TGG + Chr3:97610040-97610059 None:intergenic 30.0%
GAAGTGACTGAAACTTTATT+CGG - Chr3:97606076-97606095 MsG0380017532.01.T01:CDS 30.0%
GACTAGTAGACATAATAATG+GGG - Chr3:97610370-97610389 MsG0380017532.01.T01:CDS 30.0%
GAGCAATCTCAAAAGAAAAA+AGG - Chr3:97610294-97610313 MsG0380017532.01.T01:intron 30.0%
GATAGACTTATATCAGATAG+CGG - Chr3:97606136-97606155 MsG0380017532.01.T01:intron 30.0%
GATATAAGTCTATCCAGTAT+CGG + Chr3:97606130-97606149 None:intergenic 30.0%
GATATCCACAAGTATACTTA+TGG + Chr3:97607736-97607755 None:intergenic 30.0%
GGAATTAATGTTAGTCATGA+TGG - Chr3:97607961-97607980 MsG0380017532.01.T01:intron 30.0%
TATATAAAGAGACCCGAAAT+GGG - Chr3:97608359-97608378 MsG0380017532.01.T01:intron 30.0%
TATATATGGTAACTTGAGCA+TGG - Chr3:97610681-97610700 MsG0380017532.01.T01:CDS 30.0%
TCAAACGAAAATATGTTCAC+TGG - Chr3:97608223-97608242 MsG0380017532.01.T01:intron 30.0%
TCGCTAAAAGAAAAAACTAC+AGG + Chr3:97609378-97609397 None:intergenic 30.0%
TCTACAGTATAGTAATTGCT+AGG - Chr3:97609540-97609559 MsG0380017532.01.T01:intron 30.0%
TGACGAATGTATAAATTACC+AGG + Chr3:97610326-97610345 None:intergenic 30.0%
TGAGGAAGAATCTAATGAAA+CGG - Chr3:97606748-97606767 MsG0380017532.01.T01:intron 30.0%
TTCAAGAGTTATCACTGATA+GGG - Chr3:97608124-97608143 MsG0380017532.01.T01:intron 30.0%
TTCATATATTCTGCTCAATG+CGG + Chr3:97607878-97607897 None:intergenic 30.0%
! AACTGTTTTCACATAAGCTA+TGG + Chr3:97607397-97607416 None:intergenic 30.0%
! AAGTATTGTCTGTTCATCAT+AGG - Chr3:97608529-97608548 MsG0380017532.01.T01:intron 30.0%
! AGTCTTTATTTCTTTGTAGG+TGG - Chr3:97609185-97609204 MsG0380017532.01.T01:intron 30.0%
! ATGGACTACTTCAATTTCAA+CGG + Chr3:97610630-97610649 None:intergenic 30.0%
! TCATAGACACTTACTTGTTT+TGG + Chr3:97610115-97610134 None:intergenic 30.0%
! TTTTGCCATAAGTATACTTG+TGG - Chr3:97607728-97607747 MsG0380017532.01.T01:intron 30.0%
!! AAACTTCTGCTGGTTTAATA+TGG - Chr3:97609071-97609090 MsG0380017532.01.T01:intron 30.0%
!! ACCATTATATACTTGTTGTC+AGG - Chr3:97610217-97610236 MsG0380017532.01.T01:intron 30.0%
!! ACTTTTTCTTCTTCTGAATC+AGG - Chr3:97610049-97610068 MsG0380017532.01.T01:intron 30.0%
!! GGAAATTCACTTTTCCATAT+AGG - Chr3:97608994-97609013 MsG0380017532.01.T01:intron 30.0%
!! GTTTTGGTATGCTGAAATAT+CGG + Chr3:97610099-97610118 None:intergenic 30.0%
!! TCACTTTTCCATATAGGTAT+GGG - Chr3:97609000-97609019 MsG0380017532.01.T01:intron 30.0%
!! TTCACTTTTCCATATAGGTA+TGG - Chr3:97608999-97609018 MsG0380017532.01.T01:intron 30.0%
!!! AATCCGTCTTTATTTTCACA+GGG - Chr3:97608918-97608937 MsG0380017532.01.T01:intron 30.0%
AAACAAACTGTAATTTGGGG+TGG + Chr3:97607104-97607123 None:intergenic 35.0%
AAACTTGTACACTAAGCTAG+CGG - Chr3:97606442-97606461 MsG0380017532.01.T01:intron 35.0%
AACAAGGGGATGAAATTTGT+GGG - Chr3:97607841-97607860 MsG0380017532.01.T01:intron 35.0%
AACGAAAATATGTTCACTGG+TGG - Chr3:97608226-97608245 MsG0380017532.01.T01:intron 35.0%
AAGGGTAATCTTTCATGTTC+CGG + Chr3:97609611-97609630 None:intergenic 35.0%
AAGGTGAATATGTTGCATAC+TGG - Chr3:97610258-97610277 MsG0380017532.01.T01:intron 35.0%
AATGCGTTACAAGAAGATGT+AGG + Chr3:97608889-97608908 None:intergenic 35.0%
AATGCTTTATGCTCGTAGAA+AGG - Chr3:97606388-97606407 MsG0380017532.01.T01:intron 35.0%
ACAAATGTTACATTCAGGCT+CGG + Chr3:97606483-97606502 None:intergenic 35.0%
AGAGAAGGAAGAATATCTTC+AGG + Chr3:97606804-97606823 None:intergenic 35.0%
AGATACAGTGATATAACAGG+TGG + Chr3:97610492-97610511 None:intergenic 35.0%
AGGAAGAATCTAATGAAACG+GGG - Chr3:97606750-97606769 MsG0380017532.01.T01:intron 35.0%
ATACTCAATTTCGTAAGGCA+TGG - Chr3:97607187-97607206 MsG0380017532.01.T01:intron 35.0%
ATGCAACATATTCACCTTCT+GGG + Chr3:97610256-97610275 None:intergenic 35.0%
ATTCTACTAAATTCTCGCCA+TGG - Chr3:97608398-97608417 MsG0380017532.01.T01:intron 35.0%
CAAAGAAAGGGTAATGCTTA+AGG - Chr3:97608765-97608784 MsG0380017532.01.T01:intron 35.0%
CAACAAATGTCTTCAACAAG+TGG - Chr3:97607032-97607051 MsG0380017532.01.T01:intron 35.0%
CATTTCGGATTTCCAAAAAC+CGG - Chr3:97605962-97605981 MsG0380017532.01.T01:CDS 35.0%
CCCAAACAAACTGTAATTTG+GGG + Chr3:97607107-97607126 None:intergenic 35.0%
CCCCAAACAAACTGTAATTT+GGG + Chr3:97607108-97607127 None:intergenic 35.0%
CCTTCTCTAGTTAAAGCTTA+TGG - Chr3:97606816-97606835 MsG0380017532.01.T01:intron 35.0%
CGAGGATCAATACAATAAAC+AGG + Chr3:97605923-97605942 None:intergenic 35.0%
CTATACAACTGCATACAGAA+TGG - Chr3:97608156-97608175 MsG0380017532.01.T01:intron 35.0%
CTCTTGATGTAGGTTAACAA+GGG - Chr3:97607826-97607845 MsG0380017532.01.T01:intron 35.0%
GAAATGAAAGAAGATGGAAC+AGG - Chr3:97610429-97610448 MsG0380017532.01.T01:CDS 35.0%
GAGATAAATTTGGAGGAACA+AGG - Chr3:97610451-97610470 MsG0380017532.01.T01:CDS 35.0%
GAGGAAGAATCTAATGAAAC+GGG - Chr3:97606749-97606768 MsG0380017532.01.T01:intron 35.0%
GATGGAACAGGAGATAAATT+TGG - Chr3:97610441-97610460 MsG0380017532.01.T01:CDS 35.0%
GCAAAAGCCATTTCCTATTT+CGG + Chr3:97607548-97607567 None:intergenic 35.0%
GCCTGACAACAAGTATATAA+TGG + Chr3:97610221-97610240 None:intergenic 35.0%
GCGATCAAAGTAAAGCTATT+TGG + Chr3:97606420-97606439 None:intergenic 35.0%
GCTTTAACTCCATCTAGAAA+AGG - Chr3:97608723-97608742 MsG0380017532.01.T01:intron 35.0%
GGATAATGAAACTCTCTACA+AGG - Chr3:97605871-97605890 MsG0380017532.01.T01:three_prime_UTR 35.0%
GTATATAAAGAGACCCGAAA+TGG - Chr3:97608358-97608377 MsG0380017532.01.T01:intron 35.0%
GTGAGATACAGTGATATAAC+AGG + Chr3:97610495-97610514 None:intergenic 35.0%
GTTCAAGAGTTATCACTGAT+AGG - Chr3:97608123-97608142 MsG0380017532.01.T01:intron 35.0%
GTTTGACATAAATCCTGTAG+TGG + Chr3:97609483-97609502 None:intergenic 35.0%
TAACAAGGGGATGAAATTTG+TGG - Chr3:97607840-97607859 MsG0380017532.01.T01:intron 35.0%
TATGCAACATATTCACCTTC+TGG + Chr3:97610257-97610276 None:intergenic 35.0%
TCAAGTCATCCAAACATTCA+AGG + Chr3:97606731-97606750 None:intergenic 35.0%
TCACTATGTAATACACCTTC+AGG - Chr3:97609423-97609442 MsG0380017532.01.T01:intron 35.0%
TCTTAAGCTTGTACATGTGT+AGG - Chr3:97608324-97608343 MsG0380017532.01.T01:intron 35.0%
TCTTGATGTAGGTTAACAAG+GGG - Chr3:97607827-97607846 MsG0380017532.01.T01:intron 35.0%
TGGACTACTTCAATTTCAAC+GGG + Chr3:97610629-97610648 None:intergenic 35.0%
TTATTTGAATCCTGGAGAGA+TGG - Chr3:97609247-97609266 MsG0380017532.01.T01:CDS 35.0%
TTCATGTTTGCATCTATCAG+AGG + Chr3:97609452-97609471 None:intergenic 35.0%
TTGAACAACCCATACCTATA+TGG + Chr3:97609011-97609030 None:intergenic 35.0%
TTGAATGTTTGGATGACTTG+AGG - Chr3:97606730-97606749 MsG0380017532.01.T01:intron 35.0%
TTGGTGAATGTGAAATTGTC+AGG - Chr3:97606957-97606976 MsG0380017532.01.T01:intron 35.0%
TTTCATGTTCCGGTTACAAA+AGG + Chr3:97609601-97609620 None:intergenic 35.0%
TTTGCAACCACTTACCATTT+CGG - Chr3:97605947-97605966 MsG0380017532.01.T01:CDS 35.0%
! AAGAATATACCTCCGGTTTT+TGG + Chr3:97605977-97605996 None:intergenic 35.0%
! AAGCAAATAGTTCTACCTAC+TGG - Chr3:97608576-97608595 MsG0380017532.01.T01:intron 35.0%
! ACCCCAAATTACAGTTTGTT+TGG - Chr3:97607103-97607122 MsG0380017532.01.T01:intron 35.0%
! ATTATCTTTTGATACGCTCC+TGG + Chr3:97610591-97610610 None:intergenic 35.0%
! ATTTCAAGTGTTAGCCTGTT+AGG - Chr3:97606175-97606194 MsG0380017532.01.T01:intron 35.0%
! CCATAAGCTTTAACTAGAGA+AGG + Chr3:97606819-97606838 None:intergenic 35.0%
! CCCAAATTACAGTTTGTTTG+GGG - Chr3:97607105-97607124 MsG0380017532.01.T01:intron 35.0%
! CCCCAAATTACAGTTTGTTT+GGG - Chr3:97607104-97607123 MsG0380017532.01.T01:intron 35.0%
! TAGAAACGATCTCAGAGTTT+TGG - Chr3:97605850-97605869 MsG0380017532.01.T01:three_prime_UTR 35.0%
! TCATGGATTAAAACTTCTGC+TGG - Chr3:97609061-97609080 MsG0380017532.01.T01:intron 35.0%
! TGTTATTGGAAGTGTACCTT+TGG + Chr3:97605793-97605812 None:intergenic 35.0%
! TTTGAGATTGCTCTTAACTG+TGG + Chr3:97610287-97610306 None:intergenic 35.0%
!! AAGTGTACCTTTGGAATGTT+TGG + Chr3:97605784-97605803 None:intergenic 35.0%
!! AATTGATGCATCTTTAGGGT+TGG - Chr3:97606926-97606945 MsG0380017532.01.T01:intron 35.0%
!! ATGGTTTGAGACATGTCTTT+TGG - Chr3:97609696-97609715 MsG0380017532.01.T01:intron 35.0%
!! CTTGTTTTCATAAGCTATCC+TGG + Chr3:97607374-97607393 None:intergenic 35.0%
!!! CCCTTTTTGAGTAAACATGA+AGG - Chr3:97608101-97608120 MsG0380017532.01.T01:intron 35.0%
!!! GAATCCGTCTTTATTTTCAC+AGG - Chr3:97608917-97608936 MsG0380017532.01.T01:intron 35.0%
!!! TTTTGAAATTATTCCCGGTG+TGG + Chr3:97606053-97606072 None:intergenic 35.0%
AAAGCCATTTCCTATTTCGG+TGG + Chr3:97607545-97607564 None:intergenic 40.0%
ACAACTGCATACAGAATGGA+AGG - Chr3:97608160-97608179 MsG0380017532.01.T01:intron 40.0%
ACAAGGGGATGAAATTTGTG+GGG - Chr3:97607842-97607861 MsG0380017532.01.T01:intron 40.0%
ACACTTCCAATAACACCAAG+AGG - Chr3:97605798-97605817 MsG0380017532.01.T01:three_prime_UTR 40.0%
ACAGGATTTATGTCAAACCG+AGG - Chr3:97609485-97609504 MsG0380017532.01.T01:intron 40.0%
ACGCATAAGTTAACCGATAC+TGG - Chr3:97606114-97606133 MsG0380017532.01.T01:CDS 40.0%
AGAGCTAGACTCTAACGAAA+TGG - Chr3:97605745-97605764 MsG0380017532.01.T01:three_prime_UTR 40.0%
ATCAAACTGCCAACATCACT+TGG - Chr3:97607630-97607649 MsG0380017532.01.T01:intron 40.0%
ATCTATCAGAGGATACCTGA+AGG + Chr3:97609441-97609460 None:intergenic 40.0%
ATGAAACTCTCTACAAGGCT+TGG - Chr3:97605876-97605895 MsG0380017532.01.T01:three_prime_UTR 40.0%
ATTGACGAAGAAGATGCTGA+GGG + Chr3:97605713-97605732 None:intergenic 40.0%
CAAATTGTGCCTCTCAAGTT+TGG - Chr3:97610344-97610363 MsG0380017532.01.T01:CDS 40.0%
CAACTGCATACAGAATGGAA+GGG - Chr3:97608161-97608180 MsG0380017532.01.T01:intron 40.0%
CATCAAAAGGAAGATCGTCA+CGG + Chr3:97607146-97607165 None:intergenic 40.0%
CCTCTTGATGTAGGTTAACA+AGG - Chr3:97607825-97607844 MsG0380017532.01.T01:intron 40.0%
CCTTGTTAACCTACATCAAG+AGG + Chr3:97607828-97607847 None:intergenic 40.0%
CGCTGACAAATGTTACATTC+AGG + Chr3:97606488-97606507 None:intergenic 40.0%
CTCTAACGAAATGGAAAGTG+TGG - Chr3:97605754-97605773 MsG0380017532.01.T01:three_prime_UTR 40.0%
CTGAAATATCGGTCTTCTCT+AGG + Chr3:97610088-97610107 None:intergenic 40.0%
CTTATTTCCATAAGCTCTCC+AGG - Chr3:97607353-97607372 MsG0380017532.01.T01:intron 40.0%
GACTACTTCAATTTCAACGG+GGG + Chr3:97610627-97610646 None:intergenic 40.0%
GATTTATGTCAAACCGAGGA+CGG - Chr3:97609489-97609508 MsG0380017532.01.T01:intron 40.0%
GCACAAGGTCATGTTCATAA+AGG + Chr3:97606687-97606706 None:intergenic 40.0%
GCCCCAAACAAACTGTAATT+TGG + Chr3:97607109-97607128 None:intergenic 40.0%
GGAACAGGAGATAAATTTGG+AGG - Chr3:97610444-97610463 MsG0380017532.01.T01:CDS 40.0%
GGACTACTTCAATTTCAACG+GGG + Chr3:97610628-97610647 None:intergenic 40.0%
GGCAAACAAGTGACATCAAA+AGG + Chr3:97607159-97607178 None:intergenic 40.0%
TAAGTGGTTGCAAATAGTCG+AGG + Chr3:97605941-97605960 None:intergenic 40.0%
TCAAGTATGGACGTCTTACA+AGG + Chr3:97607327-97607346 None:intergenic 40.0%
TCCTTCCTAGTTCGTGATAT+GGG - Chr3:97609649-97609668 MsG0380017532.01.T01:CDS 40.0%
TCTTCTTCTGAATCAGGAGT+CGG - Chr3:97610055-97610074 MsG0380017532.01.T01:intron 40.0%
TGCTATGGAGGGATTACTTT+AGG - Chr3:97608953-97608972 MsG0380017532.01.T01:intron 40.0%
TGGAAATCCGAAATGGTAAG+TGG + Chr3:97605957-97605976 None:intergenic 40.0%
TGGCAAACCAAACATTCCAA+AGG - Chr3:97605774-97605793 MsG0380017532.01.T01:three_prime_UTR 40.0%
TGTTTGCTTCCTCTTGATGT+AGG - Chr3:97607816-97607835 MsG0380017532.01.T01:intron 40.0%
TTCAAAGTCTTTGATGCCTC+TGG - Chr3:97609026-97609045 MsG0380017532.01.T01:intron 40.0%
TTCCTTCCTAGTTCGTGATA+TGG - Chr3:97609648-97609667 MsG0380017532.01.T01:CDS 40.0%
TTCGTGATATGGGCATAGAT+TGG - Chr3:97609659-97609678 MsG0380017532.01.T01:CDS 40.0%
TTGTCCACCGAAATAGGAAA+TGG - Chr3:97607538-97607557 MsG0380017532.01.T01:intron 40.0%
! AATAATGGGGACAAGTCACT+TGG - Chr3:97610383-97610402 MsG0380017532.01.T01:CDS 40.0%
! ATGTTAGTCATGATGGGAGT+AGG - Chr3:97607968-97607987 MsG0380017532.01.T01:intron 40.0%
! ATTTCGTTAGAGTCTAGCTC+TGG + Chr3:97605746-97605765 None:intergenic 40.0%
! GAAAACGAAGTGTTACCAGT+AGG + Chr3:97608594-97608613 None:intergenic 40.0%
! GTTAAGTTGTCCACCGAAAT+AGG - Chr3:97607532-97607551 MsG0380017532.01.T01:intron 40.0%
! TGTTAGTCATGATGGGAGTA+GGG - Chr3:97607969-97607988 MsG0380017532.01.T01:intron 40.0%
! TTGCACACACCTTTTGTAAC+CGG - Chr3:97609589-97609608 MsG0380017532.01.T01:CDS 40.0%
!! CGGTTTTTGGAAATCCGAAA+TGG + Chr3:97605964-97605983 None:intergenic 40.0%
!! CTTCTGCTGGTTTAATATGG+CGG - Chr3:97609074-97609093 MsG0380017532.01.T01:intron 40.0%
!! TACTTTTGGAAGAAGGTCAG+AGG - Chr3:97607898-97607917 MsG0380017532.01.T01:intron 40.0%
!! TAGGATAGGCTTTGTTTACC+AGG - Chr3:97610570-97610589 MsG0380017532.01.T01:CDS 40.0%
!! TTTAGGGTTGGTTGGTTCAT+TGG - Chr3:97606938-97606957 MsG0380017532.01.T01:intron 40.0%
!! TTTGTTCGAGTTGCTATGGA+GGG - Chr3:97608942-97608961 MsG0380017532.01.T01:intron 40.0%
!!! TTTTGTTCGAGTTGCTATGG+AGG - Chr3:97608941-97608960 MsG0380017532.01.T01:intron 40.0%
AACACCAAGAGGAGTGGTAA+AGG - Chr3:97605809-97605828 MsG0380017532.01.T01:three_prime_UTR 45.0%
AAGCTATCCTGGAGAGCTTA+TGG + Chr3:97607363-97607382 None:intergenic 45.0%
AAGGACTAGAGTCTCTTGCA+TGG + Chr3:97607758-97607777 None:intergenic 45.0%
AAGGGGATGAAATTTGTGGG+GGG - Chr3:97607844-97607863 MsG0380017532.01.T01:intron 45.0%
AATATGTTCACTGGTGGCTC+CGG - Chr3:97608232-97608251 MsG0380017532.01.T01:intron 45.0%
ACATCCCCAATCCTCAATTG+GGG + Chr3:97607664-97607683 None:intergenic 45.0%
AGAAACTTGTAGCGAAGAGC+TGG - Chr3:97606993-97607012 MsG0380017532.01.T01:intron 45.0%
AGACATCCCCAATCCTCAAT+TGG + Chr3:97607666-97607685 None:intergenic 45.0%
AGACCCGAAATGGGATGTTA+GGG - Chr3:97608368-97608387 MsG0380017532.01.T01:intron 45.0%
CAAGAGGAGTGGTAAAGGTA+CGG - Chr3:97605814-97605833 MsG0380017532.01.T01:three_prime_UTR 45.0%
CAAGGGGATGAAATTTGTGG+GGG - Chr3:97607843-97607862 MsG0380017532.01.T01:intron 45.0%
CAAGTGGTAGTACCATCTGA+CGG - Chr3:97607048-97607067 MsG0380017532.01.T01:intron 45.0%
CATTGACGAAGAAGATGCTG+AGG + Chr3:97605714-97605733 None:intergenic 45.0%
CTAGTCGTTCCAAACTTGAG+AGG + Chr3:97610356-97610375 None:intergenic 45.0%
CTATGCCCATATCACGAACT+AGG + Chr3:97609657-97609676 None:intergenic 45.0%
CTTCTTCTGAATCAGGAGTC+GGG - Chr3:97610056-97610075 MsG0380017532.01.T01:intron 45.0%
GACATCCCCAATCCTCAATT+GGG + Chr3:97607665-97607684 None:intergenic 45.0%
GCACAAACATATGACCCAGA+AGG - Chr3:97610239-97610258 MsG0380017532.01.T01:intron 45.0%
GGAAACTGGACTTATGGATC+AGG - Chr3:97609742-97609761 MsG0380017532.01.T01:intron 45.0%
GGACTTTCCTCACAGAATGT+AGG - Chr3:97607705-97607724 MsG0380017532.01.T01:intron 45.0%
GGCAAAACCTACATTCTGTG+AGG + Chr3:97607715-97607734 None:intergenic 45.0%
TCCAATAACACCAAGAGGAG+TGG - Chr3:97605803-97605822 MsG0380017532.01.T01:three_prime_UTR 45.0%
TGAAACTGAGATGTCCACAC+CGG - Chr3:97606036-97606055 MsG0380017532.01.T01:CDS 45.0%
TGATGCCTCTGGCGATTTAT+CGG - Chr3:97609037-97609056 MsG0380017532.01.T01:intron 45.0%
TGTGTTCTCAATGCTGCACA+AGG + Chr3:97606702-97606721 None:intergenic 45.0%
TTCGGATTTCCAAAAACCGG+AGG - Chr3:97605965-97605984 MsG0380017532.01.T01:CDS 45.0%
TTGGGGATGTCTTCCTTCAT+TGG - Chr3:97607674-97607693 MsG0380017532.01.T01:intron 45.0%
!! AAGTCACTTGGTGCAAGAAG+AGG - Chr3:97610395-97610414 MsG0380017532.01.T01:CDS 45.0%
!! ACCACTCCTCTTGGTGTTAT+TGG + Chr3:97605807-97605826 None:intergenic 45.0%
!! GATGCATCTTTAGGGTTGGT+TGG - Chr3:97606930-97606949 MsG0380017532.01.T01:intron 45.0%
!! GGCGGTGTTATTCATAGTTG+TGG - Chr3:97609092-97609111 MsG0380017532.01.T01:intron 45.0%
!!! GGGTTTTGTTCGAGTTGCTA+TGG - Chr3:97608938-97608957 MsG0380017532.01.T01:intron 45.0%
!!! TCGCACTAGCCTTTTCTAGA+TGG + Chr3:97608735-97608754 None:intergenic 45.0%
!! ATAAATTAATTATAACAAAA+AGG + Chr3:97609149-97609168 None:intergenic 5.0%
AAGATCTCCACATCCCACTG+AGG + Chr3:97610538-97610557 None:intergenic 50.0%
ACCTCCCCCAATTGAGGATT+GGG - Chr3:97607656-97607675 MsG0380017532.01.T01:intron 50.0%
ACCTCTTCGTGTATGAGACG+AGG + Chr3:97608445-97608464 None:intergenic 50.0%
AGATGCTGAGGGTTCGGATT+TGG + Chr3:97605702-97605721 None:intergenic 50.0%
AGGCCCTAACATCCCATTTC+GGG + Chr3:97608374-97608393 None:intergenic 50.0%
ATATGTTCACTGGTGGCTCC+GGG - Chr3:97608233-97608252 MsG0380017532.01.T01:intron 50.0%
ATCGTCACGGTGGTACATAG+TGG + Chr3:97607133-97607152 None:intergenic 50.0%
ATGACCCGATAAATCGCCAG+AGG + Chr3:97609045-97609064 None:intergenic 50.0%
ATGCATGCCATCATCCTCAG+TGG - Chr3:97610521-97610540 MsG0380017532.01.T01:CDS 50.0%
CAAAAGGAAGATCGTCACGG+TGG + Chr3:97607143-97607162 None:intergenic 50.0%
CAGTTTGATGCATGAGCGCA+CGG + Chr3:97607619-97607638 None:intergenic 50.0%
CATCCCCAATCCTCAATTGG+GGG + Chr3:97607663-97607682 None:intergenic 50.0%
CCTGGAGAGATGGTTGTACA+GGG - Chr3:97609257-97609276 MsG0380017532.01.T01:CDS 50.0%
CGAAGAAGATGCTGAGGGTT+CGG + Chr3:97605708-97605727 None:intergenic 50.0%
CGTACCTTTACCACTCCTCT+TGG + Chr3:97605816-97605835 None:intergenic 50.0%
CTTCCTTCATTGGAGCTGCT+GGG - Chr3:97607684-97607703 MsG0380017532.01.T01:intron 50.0%
GAAACTGAGATGTCCACACC+GGG - Chr3:97606037-97606056 MsG0380017532.01.T01:CDS 50.0%
GAGACCCGAAATGGGATGTT+AGG - Chr3:97608367-97608386 MsG0380017532.01.T01:intron 50.0%
GAGGCCCTAACATCCCATTT+CGG + Chr3:97608375-97608394 None:intergenic 50.0%
GATGCCTCTGGCGATTTATC+GGG - Chr3:97609038-97609057 MsG0380017532.01.T01:intron 50.0%
GCCCATATCACGAACTAGGA+AGG + Chr3:97609653-97609672 None:intergenic 50.0%
GCGAAGAGCTGGATGTTGAA+AGG - Chr3:97607004-97607023 MsG0380017532.01.T01:intron 50.0%
TCCTCGTCTCATACACGAAG+AGG - Chr3:97608441-97608460 MsG0380017532.01.T01:intron 50.0%
TCCTGGAGAGATGGTTGTAC+AGG - Chr3:97609256-97609275 MsG0380017532.01.T01:CDS 50.0%
TCTGGCGATTTATCGGGTCA+TGG - Chr3:97609044-97609063 MsG0380017532.01.T01:intron 50.0%
TCTTCCTTCATTGGAGCTGC+TGG - Chr3:97607683-97607702 MsG0380017532.01.T01:intron 50.0%
TGCATGCCATCATCCTCAGT+GGG - Chr3:97610522-97610541 MsG0380017532.01.T01:CDS 50.0%
! AGTCATGATGGGAGTAGGGA+TGG - Chr3:97607973-97607992 MsG0380017532.01.T01:intron 50.0%
! CATTCAGGCTCGGTTTAGCA+AGG + Chr3:97606473-97606492 None:intergenic 50.0%
! GTAAAGGTACGGCAATCGTG+TGG - Chr3:97605825-97605844 MsG0380017532.01.T01:three_prime_UTR 50.0%
AAGCTTCCGGATGCAAGCCA+TGG + Chr3:97608418-97608437 None:intergenic 55.0%
AGTCCCAGCAGCTCCAATGA+AGG + Chr3:97607690-97607709 None:intergenic 55.0%
CAATCCTCAATTGGGGGAGG+TGG + Chr3:97607657-97607676 None:intergenic 55.0%
CACCTCCCCCAATTGAGGAT+TGG - Chr3:97607655-97607674 MsG0380017532.01.T01:intron 55.0%
CCACATCCCACTGAGGATGA+TGG + Chr3:97610531-97610550 None:intergenic 55.0%
CCATCATCCTCAGTGGGATG+TGG - Chr3:97610528-97610547 MsG0380017532.01.T01:CDS 55.0%
CCCTGTACAACCATCTCTCC+AGG + Chr3:97609260-97609279 None:intergenic 55.0%
CCTCCCCCAATTGAGGATTG+GGG - Chr3:97607657-97607676 MsG0380017532.01.T01:intron 55.0%
GAGACGAGGAGACAAGCTTC+CGG + Chr3:97608431-97608450 None:intergenic 55.0%
GGAGGTGGTCCAAGTGATGT+TGG + Chr3:97607642-97607661 None:intergenic 55.0%
TATGTCAAACCGAGGACGGC+AGG - Chr3:97609493-97609512 MsG0380017532.01.T01:intron 55.0%
TGCTGAGGGTTCGGATTTGG+TGG + Chr3:97605699-97605718 None:intergenic 55.0%
! TACCATCTGACGGATCCGCT+GGG - Chr3:97607058-97607077 MsG0380017532.01.T01:intron 55.0%
! TTCTCGCCATGGCTTGCATC+CGG - Chr3:97608409-97608428 MsG0380017532.01.T01:intron 55.0%
! TTTGGTTCACCTGCCGTCCT+CGG + Chr3:97609505-97609524 None:intergenic 55.0%
CCCCAATCCTCAATTGGGGG+AGG + Chr3:97607660-97607679 None:intergenic 60.0%
TGGACCACCTCCCCCAATTG+AGG - Chr3:97607650-97607669 MsG0380017532.01.T01:intron 60.0%
! ACCATCTGACGGATCCGCTG+GGG - Chr3:97607059-97607078 MsG0380017532.01.T01:intron 60.0%
! GTACCATCTGACGGATCCGC+TGG - Chr3:97607057-97607076 MsG0380017532.01.T01:intron 60.0%
AGAAGCTGATGCCGCCCCAG+CGG + Chr3:97607076-97607095 None:intergenic 65.0%
! ATCTGACGGATCCGCTGGGG+CGG - Chr3:97607062-97607081 MsG0380017532.01.T01:intron 65.0%
GCCCCAGCGGATCCGTCAGA+TGG + Chr3:97607063-97607082 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
Chr3 gene 97605689 97610703 97605689 ID=MsG0380017532.01;Name=MsG0380017532.01
Chr3 mRNA 97605689 97610703 97605689 ID=MsG0380017532.01.T01;Parent=MsG0380017532.01;Name=MsG0380017532.01.T01;_AED=0.49;_eAED=0.52;_QI=0|0.33|0.28|1|1|1|7|246|405
Chr3 exon 97605689 97606153 97605689 ID=MsG0380017532.01.T01:exon:5285;Parent=MsG0380017532.01.T01
Chr3 exon 97606272 97606321 97606272 ID=MsG0380017532.01.T01:exon:5284;Parent=MsG0380017532.01.T01
Chr3 exon 97606629 97606733 97606629 ID=MsG0380017532.01.T01:exon:5283;Parent=MsG0380017532.01.T01
Chr3 exon 97607114 97607188 97607114 ID=MsG0380017532.01.T01:exon:5282;Parent=MsG0380017532.01.T01
Chr3 exon 97609194 97609413 97609194 ID=MsG0380017532.01.T01:exon:5281;Parent=MsG0380017532.01.T01
Chr3 exon 97609544 97609683 97609544 ID=MsG0380017532.01.T01:exon:5280;Parent=MsG0380017532.01.T01
Chr3 exon 97610295 97610703 97610295 ID=MsG0380017532.01.T01:exon:5279;Parent=MsG0380017532.01.T01
Chr3 CDS 97610295 97610703 97610295 ID=MsG0380017532.01.T01:cds;Parent=MsG0380017532.01.T01
Chr3 CDS 97609544 97609683 97609544 ID=MsG0380017532.01.T01:cds;Parent=MsG0380017532.01.T01
Chr3 CDS 97609194 97609413 97609194 ID=MsG0380017532.01.T01:cds;Parent=MsG0380017532.01.T01
Chr3 CDS 97607114 97607188 97607114 ID=MsG0380017532.01.T01:cds;Parent=MsG0380017532.01.T01
Chr3 CDS 97606629 97606733 97606629 ID=MsG0380017532.01.T01:cds;Parent=MsG0380017532.01.T01
Chr3 CDS 97606272 97606321 97606272 ID=MsG0380017532.01.T01:cds;Parent=MsG0380017532.01.T01
Chr3 CDS 97605935 97606153 97605935 ID=MsG0380017532.01.T01:cds;Parent=MsG0380017532.01.T01
Chr3 three_prime_UTR 97605689 97605934 97605689 ID=MsG0380017532.01.T01:three_prime_utr;Parent=MsG0380017532.01.T01
Gene Sequence

>MsG0380017532.01.T01

ATGTGCACCACCAAATCCGAACCCTCAGCATCTTCTTCGTCAATGCAGCACGTGCCAGAGCTAGACTCTAACGAAATGGAAAGTGTGGCAAACCAAACATTCCAAAGGTACACTTCCAATAACACCAAGAGGAGTGGTAAAGGTACGGCAATCGTGTGGTTTAGAAACGATCTCAGAGTTTTGGATAATGAAACTCTCTACAAGGCTTGGCTTTCTTCTCAAACTCTCTTGCCTGTTTATTGTATTGATCCTCGACTATTTGCAACCACTTACCATTTCGGATTTCCAAAAACCGGAGGTATATTCTTGTTTCATTACTGTCTTTTATCTCTTTTCTTCAATGACATTGAAACTGAGATGTCCACACCGGGAATAATTTCAAAAATAGAAGTGACTGAAACTTTATTCGCATTGAGAACACAATTTCTCCTTGAATGTTTGGATGACTTGAGGAAGAATCTAATGAAACGGGGACTTAATTTGCTTATTCAACATGGCAAACCTGAAGATATTCTTCCTTCTCTAGTTAAAGCTTATGGAGCTCATACAGTTTATGCACAGAAAGAAACTTGTAGCGAAGAGCTGGATGTTGAAAGGTCTCTCAACAAATGTCTTCAACAAGTGGTAGTACCATCTGACGGATCCGCTGGGGCGGCATCAGCTTCTAACAGCCACCCCAAATTACAGTTTGTTTGGGGCACCACTATGTACCACCGTGACGATCTTCCTTTTGATGTCACTTGTTTGCCAGATGTTTATACTCAATTTCGTGGACCTAGAAATGTTCAGAAAAATTGGAGCCAAGACAAAAATTATTTGAATCCTGGAGAGATGGTTGTACAGGTTCGTGATATGGGCATAGATTGGCGCATGGGAGCAGAATGGTTTGAGACATGTCTTTTGGATTATGATCCATGTTCTAATTATGGAAACTGGACTTATGGATCAGGAGTCGGGAATGATCCTAGAGAAGACCGATATTTCAGCATACCAAAACAAGCACAAACATATGACCCAGAAGGTGAATATGTTGCATACTGGTTGCCACAGTTAAGAGCAATCTCAAAAGAAAAAAGGAACTTTCCTGGTAATTTATACATTCGTCAAATTGTGCCTCTCAAGTTTGGAACGACTAGTAGACATAATAATGGGGACAAGTCACTTGGTGCAAGAAGAGGTGATGATAGACGAAATGAAAGAAGATGGAACAGGAGATAA

Protein sequence

>MsG0380017532.01.T01

MCTTKSEPSASSSSMQHVPELDSNEMESVANQTFQRYTSNNTKRSGKGTAIVWFRNDLRVLDNETLYKAWLSSQTLLPVYCIDPRLFATTYHFGFPKTGGIFLFHYCLLSLFFNDIETEMSTPGIISKIEVTETLFALRTQFLLECLDDLRKNLMKRGLNLLIQHGKPEDILPSLVKAYGAHTVYAQKETCSEELDVERSLNKCLQQVVVPSDGSAGAASASNSHPKLQFVWGTTMYHRDDLPFDVTCLPDVYTQFRGPRNVQKNWSQDKNYLNPGEMVVQVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGSGVGNDPREDRYFSIPKQAQTYDPEGEYVAYWLPQLRAISKEKRNFPGNLYIRQIVPLKFGTTSRHNNGDKSLGARRGDDRRNERRWNRR*