AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380017671.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380017671.01.T01 MTR_3g109870 94.681 376 3 1 1 376 1 359 0.0 718
MsG0380017671.01.T01 MTR_6g071475 54.485 301 137 0 72 372 91 391 6.12e-115 340
MsG0380017671.01.T01 MTR_1g110670 35.689 283 162 9 103 371 81 357 3.27e-46 162
MsG0380017671.01.T01 MTR_6g018490 32.432 333 199 10 60 371 10 337 2.47e-44 156
MsG0380017671.01.T01 MTR_6g025610 35.379 277 162 7 107 371 56 327 4.73e-44 155
MsG0380017671.01.T01 MTR_4g089170 34.694 294 162 11 97 371 41 323 4.00e-40 145
MsG0380017671.01.T01 MTR_4g127220 32.986 288 181 7 95 372 30 315 2.24e-39 143
MsG0380017671.01.T01 MTR_7g007260 31.410 312 184 7 75 370 28 325 1.58e-35 133
MsG0380017671.01.T01 MTR_7g007260 31.329 316 191 9 75 370 28 337 7.59e-35 131
MsG0380017671.01.T01 MTR_1g088470 32.857 280 173 8 103 371 16 291 4.54e-34 129
MsG0380017671.01.T01 MTR_5g056550 31.071 280 179 8 103 371 115 391 5.94e-34 130
MsG0380017671.01.T01 MTR_6g084420 33.000 300 155 9 103 375 62 342 6.84e-34 129
MsG0380017671.01.T01 MTR_7g007260 31.410 312 183 8 75 370 28 324 1.17e-33 128
MsG0380017671.01.T01 MTR_1g115535 31.379 290 184 8 93 371 12 297 6.20e-33 125
MsG0380017671.01.T01 MTR_1g115535 31.379 290 184 8 93 371 8 293 7.77e-33 125
MsG0380017671.01.T01 MTR_7g108770 29.514 288 189 8 93 370 6 289 7.88e-33 125
MsG0380017671.01.T01 MTR_1g095110 30.769 286 166 10 103 368 39 312 1.15e-29 117
MsG0380017671.01.T01 MTR_5g056550 29.964 277 153 10 103 371 115 358 4.16e-25 105
MsG0380017671.01.T01 MTR_5g056550 32.143 140 87 5 103 237 115 251 1.92e-13 70.1
MsG0380017671.01.T01 MTR_5g056550 36.364 110 66 3 103 208 115 224 6.65e-13 68.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380017671.01.T01 AT5G11650 72.513 382 92 4 1 372 1 379 0.0 526
MsG0380017671.01.T01 AT5G11650 68.874 302 81 4 1 292 1 299 1.66e-132 381
MsG0380017671.01.T01 AT1G73480 56.386 321 134 2 52 372 149 463 3.73e-128 376
MsG0380017671.01.T01 AT1G18360 55.247 324 131 4 54 372 68 382 1.10e-124 364
MsG0380017671.01.T01 AT1G52760 33.333 288 180 7 95 372 39 324 2.66e-42 150
MsG0380017671.01.T01 AT2G39420 34.364 291 176 8 93 372 9 295 2.06e-41 148
MsG0380017671.01.T01 AT2G39410 33.557 298 183 8 85 371 1 294 3.20e-41 147
MsG0380017671.01.T01 AT1G11090 32.308 325 179 13 65 371 13 314 1.30e-40 146
MsG0380017671.01.T01 AT5G16120 30.636 346 214 10 47 370 29 370 1.51e-38 142
MsG0380017671.01.T01 AT5G16120 30.636 346 214 10 47 370 15 356 1.84e-38 141
MsG0380017671.01.T01 AT5G16120 30.422 332 207 9 59 370 11 338 1.42e-37 139
MsG0380017671.01.T01 AT5G16120 30.422 332 207 9 59 370 11 338 1.42e-37 139
MsG0380017671.01.T01 AT2G39400 34.767 279 169 6 103 371 13 288 2.33e-37 137
MsG0380017671.01.T01 AT1G77420 32.509 283 173 8 103 372 102 379 6.24e-34 129
MsG0380017671.01.T01 AT3G55180 35.106 282 165 11 103 371 13 289 3.06e-33 126
MsG0380017671.01.T01 AT3G55190 31.773 299 186 10 89 374 5 298 3.99e-32 123
MsG0380017671.01.T01 AT2G47630 32.042 284 176 9 102 371 13 293 1.46e-28 114
MsG0380017671.01.T01 AT3G62860 30.824 279 179 8 103 371 17 291 2.97e-28 113
MsG0380017671.01.T01 AT5G14980 27.143 280 181 7 107 371 44 315 4.99e-28 112
MsG0380017671.01.T01 AT2G47630 32.400 250 157 6 131 371 2 248 1.16e-26 108
MsG0380017671.01.T01 AT3G62860 32.218 239 150 6 142 371 13 248 2.42e-26 107
MsG0380017671.01.T01 AT2G47630 33.054 239 148 6 142 371 33 268 2.43e-26 107
MsG0380017671.01.T01 AT5G19290 28.276 290 174 11 103 371 40 316 2.26e-24 102
MsG0380017671.01.T01 AT2G39400 30.698 215 137 6 103 309 13 223 6.15e-19 85.9

Find 135 sgRNAs with CRISPR-Local

Find 299 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGGATTTATTATCAGGATTT+AGG 0.126422 3:-99419885 None:intergenic
CGCTCTTGGTTCCCGGTTTA+CGG 0.245680 3:+99416257 MsG0380017671.01.T01:CDS
ATATTAACAGGGAGCTTTCT+TGG 0.251583 3:+99417715 MsG0380017671.01.T01:intron
TCGTTCTCCCTCGTCGGAAT+AGG 0.253325 3:+99416057 MsG0380017671.01.T01:CDS
ATATTGTGGGATTTATTATC+AGG 0.282886 3:-99419892 None:intergenic
TGAAGAGAAGGTGGTTGGTT+AGG 0.292925 3:+99416111 MsG0380017671.01.T01:CDS
AAAGAGGCATTCCAGTTTCT+AGG 0.295461 3:+99419258 MsG0380017671.01.T01:CDS
GCTCCAAGGTTCCAATTTAA+AGG 0.300871 3:+99419227 MsG0380017671.01.T01:CDS
TTCACAAGATTTATACAATA+AGG 0.302609 3:+99419460 MsG0380017671.01.T01:CDS
GGATTTATTATCAGGATTTA+GGG 0.306373 3:-99419884 None:intergenic
TGCTTCCGCCACCCACTCTT+CGG 0.306651 3:-99419721 None:intergenic
GCTTCCGCCACCCACTCTTC+GGG 0.308444 3:-99419720 None:intergenic
GGAATACCATGCTTTCTCTT+TGG 0.330795 3:+99417761 MsG0380017671.01.T01:CDS
ATGATATTCGCAGTATTTCA+TGG 0.338631 3:-99419352 None:intergenic
CGTTCTCCCTCGTCGGAATA+GGG 0.345845 3:+99416058 MsG0380017671.01.T01:CDS
GGGAAGAAGAGGATACGTTT+AGG 0.352429 3:+99416132 MsG0380017671.01.T01:CDS
GAAGAGAAGGTGGTTGGTTA+GGG 0.360796 3:+99416112 MsG0380017671.01.T01:CDS
ATCGCTAACGGCGGCGGCGG+TGG 0.362981 3:-99415909 None:intergenic
GGCGGCGGCGGTGGTGGCGG+AGG 0.364066 3:-99415900 None:intergenic
GCAAAACTTACGCCAACTAT+TGG 0.365315 3:-99417986 None:intergenic
TTTCTCTTTGGTCACTCAAC+TGG 0.369424 3:+99417773 MsG0380017671.01.T01:CDS
CTTTGAGAAGAGGAATTATA+CGG 0.370807 3:-99415980 None:intergenic
AAGAGAAAGCATGGTATTCC+AGG 0.371380 3:-99417758 None:intergenic
GCATTTGAAAATGTCAATAA+TGG 0.372165 3:+99419606 MsG0380017671.01.T01:exon
GCTAACGGCGGCGGCGGTGG+TGG 0.384604 3:-99415906 None:intergenic
TGGCCAGTTCGAACTCTAAT+AGG 0.393321 3:-99419332 None:intergenic
GCTGCTGGATCCCTAGAAAC+TGG 0.395115 3:-99419269 None:intergenic
TAAATTATATATTGTGTGTA+GGG 0.395581 3:+99419795 MsG0380017671.01.T01:three_prime_UTR
CTCTTTGGTCACTCAACTGG+AGG 0.400550 3:+99417776 MsG0380017671.01.T01:CDS
TAGGGATCCAGCAGCTTTGT+TGG 0.405367 3:+99419277 MsG0380017671.01.T01:CDS
CACATTGAAGTGATGGTAGA+AGG 0.405601 3:+99417920 MsG0380017671.01.T01:CDS
GCGGTGGTGGCGGAGGAAAG+TGG 0.413984 3:-99415893 None:intergenic
GTCTTGATGATGGTTGTTGC+CGG 0.415404 3:+99416186 MsG0380017671.01.T01:CDS
AACGGCGGCGGCGGTGGTGG+CGG 0.419356 3:-99415903 None:intergenic
GAGAAATTTGTACATTCAGC+TGG 0.422724 3:+99419836 MsG0380017671.01.T01:three_prime_UTR
AAGAGGAATTATACGGTTGC+TGG 0.429463 3:-99415973 None:intergenic
TACTTAAGATCACCGTAAAC+CGG 0.431025 3:-99416269 None:intergenic
GCGGAGGAAAGTGGCGGTGG+CGG 0.434146 3:-99415884 None:intergenic
GTGGCGGAGGAAAGTGGCGG+TGG 0.435667 3:-99415887 None:intergenic
TCACTCAACTGGAGGGGCTG+TGG 0.448260 3:+99417784 MsG0380017671.01.T01:CDS
GGCAAAGTACTCTGATCCTC+TGG 0.452619 3:+99419298 MsG0380017671.01.T01:CDS
TCTTGTTCGTTCTCCCTCGT+CGG 0.453724 3:+99416051 MsG0380017671.01.T01:CDS
TTCTACACACTTGCCAACTT+TGG 0.457166 3:-99419686 None:intergenic
GCTCCTTTAAATTGGAACCT+TGG 0.458257 3:-99419230 None:intergenic
CTTCTCTTCAAATTCTTCCT+CGG 0.459294 3:-99416098 None:intergenic
GGAGCTACCAGAGAAAATAT+TGG 0.459523 3:-99419209 None:intergenic
AACTTTCTAACTACCAAAGT+TGG 0.459746 3:+99419673 MsG0380017671.01.T01:three_prime_UTR
TACTTTGCCAACAAAGCTGC+TGG 0.462234 3:-99419284 None:intergenic
AAAGACATAAAGCTTTATGA+TGG 0.463555 3:+99419497 MsG0380017671.01.T01:CDS
CAGTTAACATTGTGCAACTT+TGG 0.464279 3:+99417364 MsG0380017671.01.T01:CDS
TTAAATTATATATTGTGTGT+AGG 0.465601 3:+99419794 MsG0380017671.01.T01:three_prime_UTR
TTGCTGGCACCCGACGTTAG+TGG 0.473238 3:-99415957 None:intergenic
CACGCTCCGGCTCAAACAAA+AGG 0.473659 3:-99419532 None:intergenic
GACATCGCTAACGGCGGCGG+CGG 0.474563 3:-99415912 None:intergenic
TGTTCCTTCTCTTGATCAAG+TGG 0.475105 3:+99417536 MsG0380017671.01.T01:CDS
GTTGGAATGGGTCTTGATGA+TGG 0.478644 3:+99416176 MsG0380017671.01.T01:CDS
AACTTTGGTAGTTAGAAAGT+TGG 0.486077 3:-99419671 None:intergenic
AGAGCGTTGGCGCAGGATGT+TGG 0.496334 3:+99416158 MsG0380017671.01.T01:CDS
TCTTTGGTCACTCAACTGGA+GGG 0.497603 3:+99417777 MsG0380017671.01.T01:CDS
TAGCTCAGGACATTATCAAC+TGG 0.499576 3:+99419561 MsG0380017671.01.T01:CDS
TTGGCGCAGGATGTTGGAAT+GGG 0.501149 3:+99416164 MsG0380017671.01.T01:CDS
AAGATTAGATCAGAGAATCC+TGG 0.506314 3:+99417740 MsG0380017671.01.T01:CDS
GTTGGCGCAGGATGTTGGAA+TGG 0.506491 3:+99416163 MsG0380017671.01.T01:CDS
AGTGGGTGGCGGAAGCAGAT+AGG 0.506924 3:+99419727 MsG0380017671.01.T01:three_prime_UTR
GTGGTTGGTTAGGGAAGAAG+AGG 0.510352 3:+99416121 MsG0380017671.01.T01:CDS
ACATACTACACGATATATTG+TGG 0.511571 3:-99419906 None:intergenic
GAAGACATCGCTAACGGCGG+CGG 0.512381 3:-99415915 None:intergenic
CTTTATCAGCAGTTCCATGC+AGG 0.512579 3:-99419421 None:intergenic
AAGCCATCTCATCCAATAGT+TGG 0.515260 3:+99417974 MsG0380017671.01.T01:CDS
CTTTGGTCACTCAACTGGAG+GGG 0.520149 3:+99417778 MsG0380017671.01.T01:CDS
GAATTTGAAGAGAAGGTGGT+TGG 0.520875 3:+99416106 MsG0380017671.01.T01:CDS
CCCGACGTTAGTGGCTCCAT+CGG 0.522200 3:-99415948 None:intergenic
GATGGCTTCACACGCAAAGC+TGG 0.522765 3:-99417959 None:intergenic
TGGCTCCATCGGCGCATCGA+TGG 0.526428 3:-99415937 None:intergenic
TACGTTTAGGAGAAGAGCGT+TGG 0.532582 3:+99416145 MsG0380017671.01.T01:CDS
TTGAAAATGTCAATAATGGA+AGG 0.532716 3:+99419610 MsG0380017671.01.T01:exon
AAGAGGCATTCCAGTTTCTA+GGG 0.532997 3:+99419259 MsG0380017671.01.T01:CDS
CCGATGGAGCCACTAACGTC+GGG 0.538648 3:+99415948 MsG0380017671.01.T01:CDS
GTACCATTCTTTGTCCTGCA+TGG 0.539898 3:+99419407 MsG0380017671.01.T01:CDS
GGAGCGTGAAGAGATAGCTC+AGG 0.541686 3:+99419547 MsG0380017671.01.T01:CDS
TTGGTGTCTATGCAATGGAC+TGG 0.544681 3:+99417383 MsG0380017671.01.T01:CDS
TTTAAAGGAGCAAACAAAAG+AGG 0.545499 3:+99419242 MsG0380017671.01.T01:CDS
GGTATTATGATCATCATTCA+CGG 0.546448 3:+99417063 MsG0380017671.01.T01:CDS
CATACTACACGATATATTGT+GGG 0.546892 3:-99419905 None:intergenic
TGAGCTATCTCTTCACGCTC+CGG 0.549656 3:-99419545 None:intergenic
AGTGGCGGTGGCGGAAGAAG+CGG 0.550481 3:-99415875 None:intergenic
GTTCCATGCAGGACAAAGAA+TGG 0.551493 3:-99419410 None:intergenic
TGATAAAGTAACTGATCCAT+TGG 0.551814 3:+99419436 MsG0380017671.01.T01:CDS
GGACCTATTAGAGTTCGAAC+TGG 0.553822 3:+99419329 MsG0380017671.01.T01:CDS
AAATTCTTCCTCGGAGAAGA+CGG 0.555599 3:-99416089 None:intergenic
ATGCCCTCACATTGAAGTGA+TGG 0.556636 3:+99417913 MsG0380017671.01.T01:CDS
GCTCTGAACGCTTTGAGAAG+AGG 0.558966 3:-99415990 None:intergenic
CTTCCGCCACCCACTCTTCG+GGG 0.559094 3:-99419719 None:intergenic
TATAAATCTTGTGAAGCCAA+TGG 0.559126 3:-99419452 None:intergenic
GTATTATGATCATCATTCAC+GGG 0.559473 3:+99417064 MsG0380017671.01.T01:CDS
GGAGGTAGCGATGGATTACA+TGG 0.561526 3:+99417510 MsG0380017671.01.T01:CDS
CGAGGAAGAATTTGAAGAGA+AGG 0.564528 3:+99416099 MsG0380017671.01.T01:CDS
GTCTTCCATCGATGCGCCGA+TGG 0.566115 3:+99415932 MsG0380017671.01.T01:CDS
TAGGAGAAGAGCGTTGGCGC+AGG 0.566223 3:+99416151 MsG0380017671.01.T01:CDS
TTGATGATGGTTGTTGCCGG+TGG 0.569503 3:+99416189 MsG0380017671.01.T01:CDS
GTGAAGTCGCCCCGAAGAGT+GGG 0.572279 3:+99419710 MsG0380017671.01.T01:three_prime_UTR
ACGCCAACTATTGGATGAGA+TGG 0.572335 3:-99417977 None:intergenic
ATTGTGTGTAGGGATTGTAT+TGG 0.573014 3:+99419805 MsG0380017671.01.T01:three_prime_UTR
ACAGGTCATGGAGGTAGCGA+TGG 0.580290 3:+99417501 MsG0380017671.01.T01:intron
TGAATGTACAAATTTCTCAA+TGG 0.581196 3:-99419831 None:intergenic
GAAGATATGCAGATTTCGCT+AGG 0.582302 3:+99417341 MsG0380017671.01.T01:CDS
GTGGTGGCGGAGGAAAGTGG+CGG 0.584967 3:-99415890 None:intergenic
GAGTGACCAAAGAGAAAGCA+TGG 0.586609 3:-99417767 None:intergenic
ACTTAAGATCACCGTAAACC+GGG 0.587787 3:-99416268 None:intergenic
AGTGAAGTCGCCCCGAAGAG+TGG 0.591565 3:+99419709 MsG0380017671.01.T01:three_prime_UTR
ATTATCAGGATTTAGGGCCA+CGG 0.603366 3:-99419878 None:intergenic
AAGTCGCCCCGAAGAGTGGG+TGG 0.603817 3:+99419713 MsG0380017671.01.T01:three_prime_UTR
GAACGAACAAGAGAAAAGAG+AGG 0.604398 3:-99416040 None:intergenic
GGAAGAATTTGAAGAGAAGG+TGG 0.613934 3:+99416102 MsG0380017671.01.T01:CDS
TCGCCCCGAAGAGTGGGTGG+CGG 0.617674 3:+99419716 MsG0380017671.01.T01:three_prime_UTR
CTACCATCACTTCAATGTGA+GGG 0.619815 3:-99417916 None:intergenic
TCAGGACATTATCAACTGGA+TGG 0.624877 3:+99419565 MsG0380017671.01.T01:CDS
AGAAAATCGAAGTATTCCAC+CGG 0.625417 3:-99416205 None:intergenic
CAACTTTGGTGTCTATGCAA+TGG 0.631929 3:+99417378 MsG0380017671.01.T01:CDS
TCTACCATCACTTCAATGTG+AGG 0.638241 3:-99417917 None:intergenic
TGTGTAGACGAAGATGAGAG+AGG 0.642743 3:-99416012 None:intergenic
TCGATGGAAGACATCGCTAA+CGG 0.645152 3:-99415921 None:intergenic
GCAACCACTTGATCAAGAGA+AGG 0.648753 3:-99417540 None:intergenic
CGGCTCCACCGTCTTCTCCG+AGG 0.656016 3:+99416081 MsG0380017671.01.T01:CDS
GAGCCGCCCTATTCCGACGA+GGG 0.658206 3:-99416064 None:intergenic
GCCGATGGAGCCACTAACGT+CGG 0.664482 3:+99415947 MsG0380017671.01.T01:CDS
ATAGGTCCTGTGTAGACCAG+AGG 0.665370 3:-99419314 None:intergenic
TCTGATCCTCTGGTCTACAC+AGG 0.667077 3:+99419308 MsG0380017671.01.T01:CDS
TTCACGGGCTTAATGAACAC+AGG 0.671284 3:+99417079 MsG0380017671.01.T01:CDS
TTCTTCCTCGGAGAAGACGG+TGG 0.672952 3:-99416086 None:intergenic
GTCTATGCAATGGACTGGAT+AGG 0.677930 3:+99417388 MsG0380017671.01.T01:CDS
TCTCCCTCGTCGGAATAGGG+CGG 0.690876 3:+99416061 MsG0380017671.01.T01:CDS
ATGGAAGACATCGCTAACGG+CGG 0.697848 3:-99415918 None:intergenic
TTTATTGCTACAGGTCATGG+AGG 0.698534 3:+99417492 MsG0380017671.01.T01:intron
GGAGCCGCCCTATTCCGACG+AGG 0.713676 3:-99416065 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAACATATTAAGTTAAAAA+AGG - Chr3:99416889-99416908 None:intergenic 10.0%
!! AAACATATTAAGTTAAAAAA+GGG - Chr3:99416888-99416907 None:intergenic 10.0%
!! ATATTTATTTATATGTATTG+GGG - Chr3:99417243-99417262 None:intergenic 10.0%
!!! CTAAAAAAAAATCATATTTT+GGG - Chr3:99417196-99417215 None:intergenic 10.0%
!!! TAAATATTTGTTTTTATACT+TGG + Chr3:99417600-99417619 MsG0380017671.01.T01:intron 10.0%
!! GTTTATGTTTATGATAAAAA+TGG + Chr3:99416777-99416796 MsG0380017671.01.T01:intron 15.0%
!! TAAATTATATATTGTGTGTA+GGG + Chr3:99419795-99419814 MsG0380017671.01.T01:three_prime_UTR 15.0%
!! TAAATTTATGAAATCATTGT+TGG + Chr3:99417849-99417868 MsG0380017671.01.T01:intron 15.0%
!! TTAAATTATATATTGTGTGT+AGG + Chr3:99419794-99419813 MsG0380017671.01.T01:three_prime_UTR 15.0%
!! TTCATAAATTTAATAACAGA+AGG - Chr3:99417841-99417860 None:intergenic 15.0%
!!! ATTTTATTTTATTTAGGTGT+TGG + Chr3:99419758-99419777 MsG0380017671.01.T01:three_prime_UTR 15.0%
!!! ATTTTTTTTTAGCTTTTGTT+GGG + Chr3:99417204-99417223 MsG0380017671.01.T01:intron 15.0%
!!! GCTAAAAAAAAATCATATTT+TGG - Chr3:99417197-99417216 None:intergenic 15.0%
!! AAATGAAAAAAAAAAGTGGT+TGG - Chr3:99418537-99418556 None:intergenic 20.0%
!! AACCAAATGAAAAAAAAAAG+TGG - Chr3:99418541-99418560 None:intergenic 20.0%
!! ATATAGTGATTAGAATGATA+GGG - Chr3:99418471-99418490 None:intergenic 20.0%
!! GAGTTTCATTTATATCTTAA+AGG + Chr3:99416665-99416684 MsG0380017671.01.T01:intron 20.0%
!! TATATAGTGATTAGAATGAT+AGG - Chr3:99418472-99418491 None:intergenic 20.0%
!! TCATTCTAATCACTATATAA+AGG + Chr3:99418473-99418492 MsG0380017671.01.T01:intron 20.0%
!! TCGATAAATTCAAATGAATT+AGG - Chr3:99418239-99418258 None:intergenic 20.0%
!! TGATCGTAATAATATTAACA+GGG + Chr3:99417704-99417723 MsG0380017671.01.T01:intron 20.0%
!! TTCACAAGATTTATACAATA+AGG + Chr3:99419460-99419479 MsG0380017671.01.T01:CDS 20.0%
!!! AACCACTTTTTTTTTTCATT+TGG + Chr3:99418536-99418555 MsG0380017671.01.T01:intron 20.0%
!!! CTTGATAATTATGTATGTTA+AGG + Chr3:99416370-99416389 MsG0380017671.01.T01:intron 20.0%
!!! GATTTTTTTTTAGCTTTTGT+TGG + Chr3:99417203-99417222 MsG0380017671.01.T01:intron 20.0%
!!! TAATTTCTGCATTTTTATGT+AGG + Chr3:99417883-99417902 MsG0380017671.01.T01:intron 20.0%
!!! TTTCAAATTTTTCGATTGAT+TGG + Chr3:99419928-99419947 MsG0380017671.01.T01:three_prime_UTR 20.0%
!!! TTTTTTTTTAGCTTTTGTTG+GGG + Chr3:99417205-99417224 MsG0380017671.01.T01:intron 20.0%
! AATATGAATCTGCTAGATAT+AGG - Chr3:99418710-99418729 None:intergenic 25.0%
! AGATGATGATATGAAGTATA+AGG - Chr3:99417447-99417466 None:intergenic 25.0%
! AGTATATTGATATGCTATAC+TGG + Chr3:99416634-99416653 MsG0380017671.01.T01:intron 25.0%
! ATATCTAGCAGATTCATATT+AGG + Chr3:99418710-99418729 MsG0380017671.01.T01:intron 25.0%
! ATATTGTGGGATTTATTATC+AGG - Chr3:99419895-99419914 None:intergenic 25.0%
! ATCAGGATTCAATTATGAAT+CGG - Chr3:99418766-99418785 None:intergenic 25.0%
! ATGAAGAACAACATAAATAC+AGG - Chr3:99416593-99416612 None:intergenic 25.0%
! CAGAAAATCTTAAGATTATG+TGG + Chr3:99419070-99419089 MsG0380017671.01.T01:intron 25.0%
! CGAAAACATTAAATGGTATT+TGG - Chr3:99417667-99417686 None:intergenic 25.0%
! CTAAGGAAAATTTAGAAACT+GGG + Chr3:99416551-99416570 MsG0380017671.01.T01:intron 25.0%
! CTGAATCATGTTTATTGTAA+TGG + Chr3:99419098-99419117 MsG0380017671.01.T01:intron 25.0%
! CTGATCGTAATAATATTAAC+AGG + Chr3:99417703-99417722 MsG0380017671.01.T01:intron 25.0%
! GAACTTCAATTTCACAAATT+TGG - Chr3:99416478-99416497 None:intergenic 25.0%
! GCATTTGAAAATGTCAATAA+TGG + Chr3:99419606-99419625 MsG0380017671.01.T01:exon 25.0%
! GGATTTATTATCAGGATTTA+GGG - Chr3:99419887-99419906 None:intergenic 25.0%
! TAAAACAAATAACTTCAGAC+CGG - Chr3:99417476-99417495 None:intergenic 25.0%
! TAAATAAGCCTAGGAAATAA+AGG - Chr3:99418910-99418929 None:intergenic 25.0%
! TACAAAGTTGACAAAAAAAG+CGG - Chr3:99418511-99418530 None:intergenic 25.0%
! TACTATGTAAAATAACAGCT+AGG - Chr3:99418284-99418303 None:intergenic 25.0%
! TATAGTGATTAGAATGATAG+GGG - Chr3:99418470-99418489 None:intergenic 25.0%
! TCTAAGGAAAATTTAGAAAC+TGG + Chr3:99416550-99416569 MsG0380017671.01.T01:intron 25.0%
! TGAATGTACAAATTTCTCAA+TGG - Chr3:99419834-99419853 None:intergenic 25.0%
! TTGAAATTGTGAGATTTCTA+AGG + Chr3:99416534-99416553 MsG0380017671.01.T01:intron 25.0%
! TTGTGAAATTGAAGTTCAAT+TGG + Chr3:99416481-99416500 MsG0380017671.01.T01:intron 25.0%
!! AAAGACATAAAGCTTTATGA+TGG + Chr3:99419497-99419516 MsG0380017671.01.T01:CDS 25.0%
!! AAGACATTTTAAATAAGCCT+AGG - Chr3:99418919-99418938 None:intergenic 25.0%
!! TTGAAAATGTCAATAATGGA+AGG + Chr3:99419610-99419629 MsG0380017671.01.T01:exon 25.0%
!!! ACACATCCTTTTAAGTTTTA+AGG - Chr3:99419165-99419184 None:intergenic 25.0%
!!! GTTATTTGTTTTATTGCTAC+AGG + Chr3:99417483-99417502 MsG0380017671.01.T01:intron 25.0%
!!! TTTTCATTTGGTTTATGACT+TGG + Chr3:99418548-99418567 MsG0380017671.01.T01:intron 25.0%
!!! TTTTGGGAAAAAGTAAGTAA+AGG - Chr3:99417180-99417199 None:intergenic 25.0%
!!! TTTTGTTTGCTCCTTTAAAT+TGG - Chr3:99419241-99419260 None:intergenic 25.0%
!!! TTTTTTTTAGCTTTTGTTGG+GGG + Chr3:99417206-99417225 MsG0380017671.01.T01:intron 25.0%
AAAGCACAAAGTACATTCAA+AGG - Chr3:99419129-99419148 None:intergenic 30.0%
AACCCAAATAAAAGCAAGAA+AGG - Chr3:99416973-99416992 None:intergenic 30.0%
AACTTTCTAACTACCAAAGT+TGG + Chr3:99419673-99419692 MsG0380017671.01.T01:three_prime_UTR 30.0%
AAGCATGATCAATGCTTAAA+TGG - Chr3:99419006-99419025 None:intergenic 30.0%
ACATACTACACGATATATTG+TGG - Chr3:99419909-99419928 None:intergenic 30.0%
ACCCAAATAAAAGCAAGAAA+GGG - Chr3:99416972-99416991 None:intergenic 30.0%
ATAAAAATGGCGTACTGTAT+TGG + Chr3:99416790-99416809 MsG0380017671.01.T01:intron 30.0%
ATCATGCTTTCTTTGATGAA+GGG + Chr3:99419017-99419036 MsG0380017671.01.T01:intron 30.0%
ATGATATTCGCAGTATTTCA+TGG - Chr3:99419355-99419374 None:intergenic 30.0%
CATACTACACGATATATTGT+GGG - Chr3:99419908-99419927 None:intergenic 30.0%
CATACTTCAAAACCAAATTG+TGG - Chr3:99416701-99416720 None:intergenic 30.0%
CTTGGAATGAAAAGAACTTT+AGG + Chr3:99417618-99417637 MsG0380017671.01.T01:intron 30.0%
CTTTGCATGTTGAAATTTGA+AGG + Chr3:99416344-99416363 MsG0380017671.01.T01:intron 30.0%
GACATTAACAGTTGAAAAGA+AGG - Chr3:99418151-99418170 None:intergenic 30.0%
GGGATTTATTATCAGGATTT+AGG - Chr3:99419888-99419907 None:intergenic 30.0%
GGTATTATGATCATCATTCA+CGG + Chr3:99417063-99417082 MsG0380017671.01.T01:CDS 30.0%
GTATTATGATCATCATTCAC+GGG + Chr3:99417064-99417083 MsG0380017671.01.T01:CDS 30.0%
TAGATGATATATGAGCTTGT+AGG + Chr3:99418594-99418613 MsG0380017671.01.T01:intron 30.0%
TATAAATCTTGTGAAGCCAA+TGG - Chr3:99419455-99419474 None:intergenic 30.0%
TATGAGCCTAAATATGAGAA+GGG - Chr3:99418975-99418994 None:intergenic 30.0%
TATTTGTCTCTTTAGTCTCT+AGG + Chr3:99416733-99416752 MsG0380017671.01.T01:intron 30.0%
TCTCTAGTGTGTATCTTTAT+TGG + Chr3:99418425-99418444 MsG0380017671.01.T01:intron 30.0%
TGATAAAGTAACTGATCCAT+TGG + Chr3:99419436-99419455 MsG0380017671.01.T01:CDS 30.0%
TGATCAATGCTTAAATGGAA+AGG - Chr3:99419001-99419020 None:intergenic 30.0%
TGTGTTGTAGTATCTTGATT+TGG + Chr3:99418375-99418394 MsG0380017671.01.T01:intron 30.0%
TTATTTGCATTTGACAGTCA+GGG - Chr3:99418177-99418196 None:intergenic 30.0%
TTCATATTAGGATTCGATTC+AGG + Chr3:99418722-99418741 MsG0380017671.01.T01:intron 30.0%
TTCCTGCCTTAAAACTTAAA+AGG + Chr3:99419156-99419175 MsG0380017671.01.T01:intron 30.0%
TTTAAAGGAGCAAACAAAAG+AGG + Chr3:99419242-99419261 MsG0380017671.01.T01:CDS 30.0%
TTTATTTGCATTTGACAGTC+AGG - Chr3:99418178-99418197 None:intergenic 30.0%
! AACTTTGGTAGTTAGAAAGT+TGG - Chr3:99419674-99419693 None:intergenic 30.0%
! ATTTTCGCTTATGTTCTTTC+AGG + Chr3:99417040-99417059 MsG0380017671.01.T01:intron 30.0%
! CTTTGAGAAGAGGAATTATA+CGG - Chr3:99415983-99416002 None:intergenic 30.0%
! TAAATTTCAGTGATTTTCCG+TGG + Chr3:99419861-99419880 MsG0380017671.01.T01:three_prime_UTR 30.0%
! TGGAATACTTCGATTTTCTA+TGG + Chr3:99416209-99416228 MsG0380017671.01.T01:CDS 30.0%
! TTTCTGCATTTTTATGTAGG+CGG + Chr3:99417886-99417905 MsG0380017671.01.T01:intron 30.0%
! TTTTCGCTTATGTTCTTTCA+GGG + Chr3:99417041-99417060 MsG0380017671.01.T01:intron 30.0%
!! AAAAAGGGAGATTTTAATCG+AGG - Chr3:99416873-99416892 None:intergenic 30.0%
!! GAGATTTTAATCGAGGATTT+GGG - Chr3:99416866-99416885 None:intergenic 30.0%
!!! AGGGTTTTGGTTTAGATTTT+TGG + Chr3:99416440-99416459 MsG0380017671.01.T01:intron 30.0%
!!! ATCCTTTTAAGTTTTAAGGC+AGG - Chr3:99419161-99419180 None:intergenic 30.0%
!!! GTTTTGGTTTAGATTTTTGG+TGG + Chr3:99416443-99416462 MsG0380017671.01.T01:intron 30.0%
!!! TTTTTTTAGCTTTTGTTGGG+GGG + Chr3:99417207-99417226 MsG0380017671.01.T01:intron 30.0%
AACTGGGTAGATCGAATTAT+TGG + Chr3:99416567-99416586 MsG0380017671.01.T01:intron 35.0%
AAGATTAGATCAGAGAATCC+TGG + Chr3:99417740-99417759 MsG0380017671.01.T01:CDS 35.0%
AAGCTTCATAGTGTGAAAAG+AGG + Chr3:99416420-99416439 MsG0380017671.01.T01:intron 35.0%
AAGTCAGCACCAAAAAAAAG+GGG + Chr3:99419642-99419661 MsG0380017671.01.T01:three_prime_UTR 35.0%
AAGTTGACAAAAAAAGCGGT+TGG - Chr3:99418507-99418526 None:intergenic 35.0%
AGAAGTCAGCACCAAAAAAA+AGG + Chr3:99419640-99419659 MsG0380017671.01.T01:three_prime_UTR 35.0%
AGCTTCATAGTGTGAAAAGA+GGG + Chr3:99416421-99416440 MsG0380017671.01.T01:intron 35.0%
ATATTAACAGGGAGCTTTCT+TGG + Chr3:99417715-99417734 MsG0380017671.01.T01:intron 35.0%
ATTGTGTGTAGGGATTGTAT+TGG + Chr3:99419805-99419824 MsG0380017671.01.T01:three_prime_UTR 35.0%
CAGTTAACATTGTGCAACTT+TGG + Chr3:99417364-99417383 MsG0380017671.01.T01:CDS 35.0%
CATATCATCATCTTTGTGTC+CGG + Chr3:99417454-99417473 MsG0380017671.01.T01:intron 35.0%
CGCATAGCGAAAACATTAAA+TGG - Chr3:99417674-99417693 None:intergenic 35.0%
CTTCTCTTCAAATTCTTCCT+CGG - Chr3:99416101-99416120 None:intergenic 35.0%
GAAGTCAGCACCAAAAAAAA+GGG + Chr3:99419641-99419660 MsG0380017671.01.T01:three_prime_UTR 35.0%
GAGAAATTTGTACATTCAGC+TGG + Chr3:99419836-99419855 MsG0380017671.01.T01:three_prime_UTR 35.0%
GATAGAAAACTCTTGCCTAT+TGG + Chr3:99416943-99416962 MsG0380017671.01.T01:intron 35.0%
GATCATGCTTTCTTTGATGA+AGG + Chr3:99419016-99419035 MsG0380017671.01.T01:intron 35.0%
GTATGAGCCTAAATATGAGA+AGG - Chr3:99418976-99418995 None:intergenic 35.0%
GTTTACGGTGATCTTAAGTA+AGG + Chr3:99416272-99416291 MsG0380017671.01.T01:intron 35.0%
TAACAGTTGAAAAGAAGGCA+GGG - Chr3:99418146-99418165 None:intergenic 35.0%
TACTTAAGATCACCGTAAAC+CGG - Chr3:99416272-99416291 None:intergenic 35.0%
TCAAAACCAAATTGTGGAGA+TGG - Chr3:99416695-99416714 None:intergenic 35.0%
TCAATGCTTAAATGGAAAGG+AGG - Chr3:99418998-99419017 None:intergenic 35.0%
TGGTACAAAACTGAACTCAA+TGG + Chr3:99418395-99418414 MsG0380017671.01.T01:intron 35.0%
TTAACAGTTGAAAAGAAGGC+AGG - Chr3:99418147-99418166 None:intergenic 35.0%
TTACACTGAGTGGTTAAATC+AGG - Chr3:99418783-99418802 None:intergenic 35.0%
TTCTATTCCATACAGTTGTG+CGG + Chr3:99416991-99417010 MsG0380017671.01.T01:intron 35.0%
TTTCGCTTATGTTCTTTCAG+GGG + Chr3:99417042-99417061 MsG0380017671.01.T01:intron 35.0%
! AGAAAATCGAAGTATTCCAC+CGG - Chr3:99416208-99416227 None:intergenic 35.0%
! ATAGTGTGAAAAGAGGGTTT+TGG + Chr3:99416427-99416446 MsG0380017671.01.T01:intron 35.0%
! TCAATAGTTGTTACTTGCTG+TGG + Chr3:99417142-99417161 MsG0380017671.01.T01:intron 35.0%
! TGCGGCTCTTTTTAAACATT+TGG + Chr3:99417009-99417028 MsG0380017671.01.T01:intron 35.0%
! TGTTGCTCCAATATTTTCTC+TGG + Chr3:99419202-99419221 MsG0380017671.01.T01:CDS 35.0%
!! AAATAAGAGCACTAGATGCA+GGG - Chr3:99418854-99418873 None:intergenic 35.0%
!! AATGAGTACTGAGTCAGAAT+TGG - Chr3:99417313-99417332 None:intergenic 35.0%
!! ACTCAGTACTCATTTTTCAG+CGG + Chr3:99417319-99417338 MsG0380017671.01.T01:intron 35.0%
!! AGCCCTTTCTTGCTTTTATT+TGG + Chr3:99416967-99416986 MsG0380017671.01.T01:intron 35.0%
!! ATGAGTACTGAGTCAGAATT+GGG - Chr3:99417312-99417331 None:intergenic 35.0%
!! CAATAGTTGTTACTTGCTGT+GGG + Chr3:99417143-99417162 MsG0380017671.01.T01:intron 35.0%
!! GCCCTTTCTTGCTTTTATTT+GGG + Chr3:99416968-99416987 MsG0380017671.01.T01:intron 35.0%
!! GGAGATTTTAATCGAGGATT+TGG - Chr3:99416867-99416886 None:intergenic 35.0%
!! TGCTCTTATTTCTGATCTGT+TGG + Chr3:99418863-99418882 MsG0380017671.01.T01:intron 35.0%
!! TGTTTTATTGCTACAGGTCA+TGG + Chr3:99417489-99417508 MsG0380017671.01.T01:intron 35.0%
!! TTGTACTGAAGAGTGTTAGA+TGG + Chr3:99416840-99416859 MsG0380017671.01.T01:intron 35.0%
AAATTCTTCCTCGGAGAAGA+CGG - Chr3:99416092-99416111 None:intergenic 40.0%
AAGAGGAATTATACGGTTGC+TGG - Chr3:99415976-99415995 None:intergenic 40.0%
AAGCCATCTCATCCAATAGT+TGG + Chr3:99417974-99417993 MsG0380017671.01.T01:CDS 40.0%
ACTTAAGATCACCGTAAACC+GGG - Chr3:99416271-99416290 None:intergenic 40.0%
AGTCAGCACCAAAAAAAAGG+GGG + Chr3:99419643-99419662 MsG0380017671.01.T01:three_prime_UTR 40.0%
ATTTCTCAGCAGTACTTTCC+CGG + Chr3:99418819-99418838 MsG0380017671.01.T01:intron 40.0%
CACATTGAAGTGATGGTAGA+AGG + Chr3:99417920-99417939 MsG0380017671.01.T01:CDS 40.0%
CAGTAGTATGATGTGAGCTT+TGG + Chr3:99418199-99418218 MsG0380017671.01.T01:intron 40.0%
CCACATCCCTTCTCATATTT+AGG + Chr3:99418966-99418985 MsG0380017671.01.T01:intron 40.0%
CCTAAATATGAGAAGGGATG+TGG - Chr3:99418969-99418988 None:intergenic 40.0%
CGAGGAAGAATTTGAAGAGA+AGG + Chr3:99416099-99416118 MsG0380017671.01.T01:CDS 40.0%
CTACCATCACTTCAATGTGA+GGG - Chr3:99417919-99417938 None:intergenic 40.0%
GAACGAACAAGAGAAAAGAG+AGG - Chr3:99416043-99416062 None:intergenic 40.0%
GAAGATATGCAGATTTCGCT+AGG + Chr3:99417341-99417360 MsG0380017671.01.T01:CDS 40.0%
GAATTTGAAGAGAAGGTGGT+TGG + Chr3:99416106-99416125 MsG0380017671.01.T01:CDS 40.0%
GATAAACCTGACTAGATCTG+AGG + Chr3:99418306-99418325 MsG0380017671.01.T01:intron 40.0%
GCAAAACTTACGCCAACTAT+TGG - Chr3:99417989-99418008 None:intergenic 40.0%
GCTAGATATAGGACTCCTAA+GGG - Chr3:99418699-99418718 None:intergenic 40.0%
GCTCCAAGGTTCCAATTTAA+AGG + Chr3:99419227-99419246 MsG0380017671.01.T01:CDS 40.0%
GCTCCTTTAAATTGGAACCT+TGG - Chr3:99419233-99419252 None:intergenic 40.0%
GGAAGAATTTGAAGAGAAGG+TGG + Chr3:99416102-99416121 MsG0380017671.01.T01:CDS 40.0%
GGAATACCATGCTTTCTCTT+TGG + Chr3:99417761-99417780 MsG0380017671.01.T01:CDS 40.0%
GGAGCTACCAGAGAAAATAT+TGG - Chr3:99419212-99419231 None:intergenic 40.0%
GGCATGAATGATGCTAAAAC+CGG + Chr3:99418884-99418903 MsG0380017671.01.T01:intron 40.0%
TAAGCCTAGGAAATAAAGGC+CGG - Chr3:99418906-99418925 None:intergenic 40.0%
TAGCTCAGGACATTATCAAC+TGG + Chr3:99419561-99419580 MsG0380017671.01.T01:CDS 40.0%
TCAGGACATTATCAACTGGA+TGG + Chr3:99419565-99419584 MsG0380017671.01.T01:CDS 40.0%
TCTACCATCACTTCAATGTG+AGG - Chr3:99417920-99417939 None:intergenic 40.0%
TGCTAGATATAGGACTCCTA+AGG - Chr3:99418700-99418719 None:intergenic 40.0%
TGTTCCTTCTCTTGATCAAG+TGG + Chr3:99417536-99417555 MsG0380017671.01.T01:CDS 40.0%
TTCTACACACTTGCCAACTT+TGG - Chr3:99419689-99419708 None:intergenic 40.0%
TTTATTGCTACAGGTCATGG+AGG + Chr3:99417492-99417511 MsG0380017671.01.T01:intron 40.0%
TTTCTCTTTGGTCACTCAAC+TGG + Chr3:99417773-99417792 MsG0380017671.01.T01:CDS 40.0%
! AAAACCGGCCTTTATTTCCT+AGG + Chr3:99418899-99418918 MsG0380017671.01.T01:intron 40.0%
! AAGAGAAAGCATGGTATTCC+AGG - Chr3:99417761-99417780 None:intergenic 40.0%
! ATTATCAGGATTTAGGGCCA+CGG - Chr3:99419881-99419900 None:intergenic 40.0%
! CTGTTAGTTCTTATGCCCTT+AGG + Chr3:99418681-99418700 MsG0380017671.01.T01:intron 40.0%
! TATTTTCTCTGGTAGCTCCA+AGG + Chr3:99419213-99419232 MsG0380017671.01.T01:CDS 40.0%
!! AAAGAGGCATTCCAGTTTCT+AGG + Chr3:99419258-99419277 MsG0380017671.01.T01:CDS 40.0%
!! AAGAGGCATTCCAGTTTCTA+GGG + Chr3:99419259-99419278 MsG0380017671.01.T01:CDS 40.0%
!! AATAAGAGCACTAGATGCAG+GGG - Chr3:99418853-99418872 None:intergenic 40.0%
!! CAACTTTGGTGTCTATGCAA+TGG + Chr3:99417378-99417397 MsG0380017671.01.T01:CDS 40.0%
!! GAAATAAGAGCACTAGATGC+AGG - Chr3:99418855-99418874 None:intergenic 40.0%
!!! ATGCTTTGTTTTGTCGCTCT+TGG + Chr3:99416243-99416262 MsG0380017671.01.T01:CDS 40.0%
AAAAGAGCCGCACAACTGTA+TGG - Chr3:99417001-99417020 None:intergenic 45.0%
ACGCCAACTATTGGATGAGA+TGG - Chr3:99417980-99417999 None:intergenic 45.0%
AGGCAGGGATGTTTCTTTCA+TGG - Chr3:99418131-99418150 None:intergenic 45.0%
ATGCCCTCACATTGAAGTGA+TGG + Chr3:99417913-99417932 MsG0380017671.01.T01:CDS 45.0%
ATTTGCCTTTGCACGAGGAA+TGG + Chr3:99416921-99416940 MsG0380017671.01.T01:intron 45.0%
CCACTCACATTTACACTGAG+TGG - Chr3:99418793-99418812 None:intergenic 45.0%
CCACTCAGTGTAAATGTGAG+TGG + Chr3:99418790-99418809 MsG0380017671.01.T01:intron 45.0%
CTTTATCAGCAGTTCCATGC+AGG - Chr3:99419424-99419443 None:intergenic 45.0%
GAGTGACCAAAGAGAAAGCA+TGG - Chr3:99417770-99417789 None:intergenic 45.0%
GCAACCACTTGATCAAGAGA+AGG - Chr3:99417543-99417562 None:intergenic 45.0%
GGACCTATTAGAGTTCGAAC+TGG + Chr3:99419329-99419348 MsG0380017671.01.T01:CDS 45.0%
GGATCACCATCTCCACAATT+TGG + Chr3:99416686-99416705 MsG0380017671.01.T01:intron 45.0%
GGGAAGAAGAGGATACGTTT+AGG + Chr3:99416132-99416151 MsG0380017671.01.T01:CDS 45.0%
GTACCATTCTTTGTCCTGCA+TGG + Chr3:99419407-99419426 MsG0380017671.01.T01:CDS 45.0%
GTCAGCACCAAAAAAAAGGG+GGG + Chr3:99419644-99419663 MsG0380017671.01.T01:three_prime_UTR 45.0%
GTTCCATGCAGGACAAAGAA+TGG - Chr3:99419413-99419432 None:intergenic 45.0%
GTTGGAATGGGTCTTGATGA+TGG + Chr3:99416176-99416195 MsG0380017671.01.T01:CDS 45.0%
TACTTTGCCAACAAAGCTGC+TGG - Chr3:99419287-99419306 None:intergenic 45.0%
TCAGCACCAAAAAAAAGGGG+GGG + Chr3:99419645-99419664 MsG0380017671.01.T01:three_prime_UTR 45.0%
TCGATGGAAGACATCGCTAA+CGG - Chr3:99415924-99415943 None:intergenic 45.0%
TCTATCCATTCCTCGTGCAA+AGG - Chr3:99416929-99416948 None:intergenic 45.0%
TCTTTGGTCACTCAACTGGA+GGG + Chr3:99417777-99417796 MsG0380017671.01.T01:CDS 45.0%
TGGCCAGTTCGAACTCTAAT+AGG - Chr3:99419335-99419354 None:intergenic 45.0%
TGTGTAGACGAAGATGAGAG+AGG - Chr3:99416015-99416034 None:intergenic 45.0%
TTCACGGGCTTAATGAACAC+AGG + Chr3:99417079-99417098 MsG0380017671.01.T01:CDS 45.0%
! AGTACTGAGTCAGAATTGGG+TGG - Chr3:99417309-99417328 None:intergenic 45.0%
! GAAGAGAAGGTGGTTGGTTA+GGG + Chr3:99416112-99416131 MsG0380017671.01.T01:CDS 45.0%
! GATGTGTAACGTGTTGATGC+AGG + Chr3:99419178-99419197 MsG0380017671.01.T01:intron 45.0%
! GGCGTAAGTTTTGCACTTCT+TGG + Chr3:99417995-99418014 MsG0380017671.01.T01:intron 45.0%
! TACGTTTAGGAGAAGAGCGT+TGG + Chr3:99416145-99416164 MsG0380017671.01.T01:CDS 45.0%
! TGAAGAGAAGGTGGTTGGTT+AGG + Chr3:99416111-99416130 MsG0380017671.01.T01:CDS 45.0%
! TGTTGCTTCTGTGCTCAGTT+TGG + Chr3:99418054-99418073 MsG0380017671.01.T01:intron 45.0%
! TTGGTGTCTATGCAATGGAC+TGG + Chr3:99417383-99417402 MsG0380017671.01.T01:CDS 45.0%
!! GATTGATTTGCCTTTGCACG+AGG + Chr3:99416916-99416935 MsG0380017671.01.T01:intron 45.0%
!! GTCTATGCAATGGACTGGAT+AGG + Chr3:99417388-99417407 MsG0380017671.01.T01:CDS 45.0%
!! GTCTTGATGATGGTTGTTGC+CGG + Chr3:99416186-99416205 MsG0380017671.01.T01:CDS 45.0%
!! AAATATTTATTTATATGTAT+TGG - Chr3:99417245-99417264 None:intergenic 5.0%
!! AATATTTATTTATATGTATT+GGG - Chr3:99417244-99417263 None:intergenic 5.0%
!! ATATAAATAAATATTTCTTA+TGG + Chr3:99417249-99417268 MsG0380017671.01.T01:intron 5.0%
!!! ATTCATATTTTATTTTATTT+AGG + Chr3:99419752-99419771 MsG0380017671.01.T01:three_prime_UTR 5.0%
!!! TAAAAATATCATATTTTTAT+TGG + Chr3:99418641-99418660 MsG0380017671.01.T01:intron 5.0%
AGCAAGAAAGGGCTGCCAAT+AGG - Chr3:99416961-99416980 None:intergenic 50.0%
ATAGGTCCTGTGTAGACCAG+AGG - Chr3:99419317-99419336 None:intergenic 50.0%
ATGGAAGACATCGCTAACGG+CGG - Chr3:99415921-99415940 None:intergenic 50.0%
CTCTTTGGTCACTCAACTGG+AGG + Chr3:99417776-99417795 MsG0380017671.01.T01:CDS 50.0%
CTTTGGTCACTCAACTGGAG+GGG + Chr3:99417778-99417797 MsG0380017671.01.T01:CDS 50.0%
TCTGATCCTCTGGTCTACAC+AGG + Chr3:99419308-99419327 MsG0380017671.01.T01:CDS 50.0%
TCTTGTTCGTTCTCCCTCGT+CGG + Chr3:99416051-99416070 MsG0380017671.01.T01:CDS 50.0%
TGAGCTATCTCTTCACGCTC+CGG - Chr3:99419548-99419567 None:intergenic 50.0%
TTGGCGCAGGATGTTGGAAT+GGG + Chr3:99416164-99416183 MsG0380017671.01.T01:CDS 50.0%
! AGCTTTTGTTGGGGGGTCTT+CGG + Chr3:99417214-99417233 MsG0380017671.01.T01:intron 50.0%
! CTGACTAGATCTGAGGCACT+CGG + Chr3:99418313-99418332 MsG0380017671.01.T01:intron 50.0%
! GGCAAAGTACTCTGATCCTC+TGG + Chr3:99419298-99419317 MsG0380017671.01.T01:CDS 50.0%
! GTGGTTGGTTAGGGAAGAAG+AGG + Chr3:99416121-99416140 MsG0380017671.01.T01:CDS 50.0%
! GTTTTGTCGCTCTTGGTTCC+CGG + Chr3:99416250-99416269 MsG0380017671.01.T01:CDS 50.0%
! TAGGGATCCAGCAGCTTTGT+TGG + Chr3:99419277-99419296 MsG0380017671.01.T01:CDS 50.0%
!! GCACGACCTTTTGTTTGAGC+CGG + Chr3:99419526-99419545 MsG0380017671.01.T01:CDS 50.0%
!! GCTCTGAACGCTTTGAGAAG+AGG - Chr3:99415993-99416012 None:intergenic 50.0%
!! GGAGGTAGCGATGGATTACA+TGG + Chr3:99417510-99417529 MsG0380017671.01.T01:CDS 50.0%
!! TTGATGATGGTTGTTGCCGG+TGG + Chr3:99416189-99416208 MsG0380017671.01.T01:CDS 50.0%
!!! TGGCAACCCCCCCTTTTTTT+TGG - Chr3:99419654-99419673 None:intergenic 50.0%
ACAGGTCATGGAGGTAGCGA+TGG + Chr3:99417501-99417520 MsG0380017671.01.T01:intron 55.0%
CACGCTCCGGCTCAAACAAA+AGG - Chr3:99419535-99419554 None:intergenic 55.0%
CGAGTGCCTCAGATCTAGTC+AGG - Chr3:99418315-99418334 None:intergenic 55.0%
CGCTCTTGGTTCCCGGTTTA+CGG + Chr3:99416257-99416276 MsG0380017671.01.T01:CDS 55.0%
CGTTCTCCCTCGTCGGAATA+GGG + Chr3:99416058-99416077 MsG0380017671.01.T01:CDS 55.0%
GATGGCTTCACACGCAAAGC+TGG - Chr3:99417962-99417981 None:intergenic 55.0%
GCTGCTGGATCCCTAGAAAC+TGG - Chr3:99419272-99419291 None:intergenic 55.0%
GGAGCGTGAAGAGATAGCTC+AGG + Chr3:99419547-99419566 MsG0380017671.01.T01:CDS 55.0%
GTTGGCGCAGGATGTTGGAA+TGG + Chr3:99416163-99416182 MsG0380017671.01.T01:CDS 55.0%
TCGTTCTCCCTCGTCGGAAT+AGG + Chr3:99416057-99416076 MsG0380017671.01.T01:CDS 55.0%
TTCTTCCTCGGAGAAGACGG+TGG - Chr3:99416089-99416108 None:intergenic 55.0%
! GCTTTTGTTGGGGGGTCTTC+GGG + Chr3:99417215-99417234 MsG0380017671.01.T01:intron 55.0%
AGTGAAGTCGCCCCGAAGAG+TGG + Chr3:99419709-99419728 MsG0380017671.01.T01:three_prime_UTR 60.0%
CCCGACGTTAGTGGCTCCAT+CGG - Chr3:99415951-99415970 None:intergenic 60.0%
CCGATGGAGCCACTAACGTC+GGG + Chr3:99415948-99415967 MsG0380017671.01.T01:CDS 60.0%
GAAGACATCGCTAACGGCGG+CGG - Chr3:99415918-99415937 None:intergenic 60.0%
GCCGATGGAGCCACTAACGT+CGG + Chr3:99415947-99415966 MsG0380017671.01.T01:CDS 60.0%
GTCTTCCATCGATGCGCCGA+TGG + Chr3:99415932-99415951 MsG0380017671.01.T01:CDS 60.0%
GTGAAGTCGCCCCGAAGAGT+GGG + Chr3:99419710-99419729 MsG0380017671.01.T01:three_prime_UTR 60.0%
TCACTCAACTGGAGGGGCTG+TGG + Chr3:99417784-99417803 MsG0380017671.01.T01:CDS 60.0%
TCTCCCTCGTCGGAATAGGG+CGG + Chr3:99416061-99416080 MsG0380017671.01.T01:CDS 60.0%
TGCTTCCGCCACCCACTCTT+CGG - Chr3:99419724-99419743 None:intergenic 60.0%
TTGCTGGCACCCGACGTTAG+TGG - Chr3:99415960-99415979 None:intergenic 60.0%
!! AGAGCGTTGGCGCAGGATGT+TGG + Chr3:99416158-99416177 MsG0380017671.01.T01:CDS 60.0%
!! AGTGGGTGGCGGAAGCAGAT+AGG + Chr3:99419727-99419746 MsG0380017671.01.T01:three_prime_UTR 60.0%
!! TAGGAGAAGAGCGTTGGCGC+AGG + Chr3:99416151-99416170 MsG0380017671.01.T01:CDS 60.0%
AAGTCGCCCCGAAGAGTGGG+TGG + Chr3:99419713-99419732 MsG0380017671.01.T01:three_prime_UTR 65.0%
AGATGCAGGGGACGCGATGC+CGG - Chr3:99418841-99418860 None:intergenic 65.0%
CTTCCGCCACCCACTCTTCG+GGG - Chr3:99419722-99419741 None:intergenic 65.0%
GAGCCGCCCTATTCCGACGA+GGG - Chr3:99416067-99416086 None:intergenic 65.0%
GCTTCCGCCACCCACTCTTC+GGG - Chr3:99419723-99419742 None:intergenic 65.0%
TGGCTCCATCGGCGCATCGA+TGG - Chr3:99415940-99415959 None:intergenic 65.0%
!! AGTGGCGGTGGCGGAAGAAG+CGG - Chr3:99415878-99415897 None:intergenic 65.0%
!! GTGGTGGCGGAGGAAAGTGG+CGG - Chr3:99415893-99415912 None:intergenic 65.0%
CGGCTCCACCGTCTTCTCCG+AGG + Chr3:99416081-99416100 MsG0380017671.01.T01:CDS 70.0%
GACATCGCTAACGGCGGCGG+CGG - Chr3:99415915-99415934 None:intergenic 70.0%
GATGCAGGGGACGCGATGCC+GGG - Chr3:99418840-99418859 None:intergenic 70.0%
GCGGAGGAAAGTGGCGGTGG+CGG - Chr3:99415887-99415906 None:intergenic 70.0%
GGAGCCGCCCTATTCCGACG+AGG - Chr3:99416068-99416087 None:intergenic 70.0%
TCGCCCCGAAGAGTGGGTGG+CGG + Chr3:99419716-99419735 MsG0380017671.01.T01:three_prime_UTR 70.0%
! GTGGCGGAGGAAAGTGGCGG+TGG - Chr3:99415890-99415909 None:intergenic 70.0%
!! GCGGTGGTGGCGGAGGAAAG+TGG - Chr3:99415896-99415915 None:intergenic 70.0%
ATCGCTAACGGCGGCGGCGG+TGG - Chr3:99415912-99415931 None:intergenic 75.0%
! GCTAACGGCGGCGGCGGTGG+TGG - Chr3:99415909-99415928 None:intergenic 80.0%
!! AACGGCGGCGGCGGTGGTGG+CGG - Chr3:99415906-99415925 None:intergenic 80.0%
!!! GGCGGCGGCGGTGGTGGCGG+AGG - Chr3:99415903-99415922 None:intergenic 90.0%
Chromosome Type Strat End Strand Name
Chr3 gene 99415798 99420023 99415798 ID=MsG0380017671.01;Name=MsG0380017671.01
Chr3 mRNA 99415798 99420023 99415798 ID=MsG0380017671.01.T01;Parent=MsG0380017671.01;Name=MsG0380017671.01.T01;_AED=0.33;_eAED=0.33;_QI=132|1|1|1|1|1|7|410|376
Chr3 exon 99415798 99416288 99415798 ID=MsG0380017671.01.T01:exon:2183;Parent=MsG0380017671.01.T01
Chr3 exon 99417062 99417100 99417062 ID=MsG0380017671.01.T01:exon:2184;Parent=MsG0380017671.01.T01
Chr3 exon 99417339 99417409 99417339 ID=MsG0380017671.01.T01:exon:2185;Parent=MsG0380017671.01.T01
Chr3 exon 99417505 99417569 99417505 ID=MsG0380017671.01.T01:exon:2186;Parent=MsG0380017671.01.T01
Chr3 exon 99417725 99417814 99417725 ID=MsG0380017671.01.T01:exon:2187;Parent=MsG0380017671.01.T01
Chr3 exon 99417905 99417997 99417905 ID=MsG0380017671.01.T01:exon:2188;Parent=MsG0380017671.01.T01
Chr3 exon 99419200 99420023 99419200 ID=MsG0380017671.01.T01:exon:2189;Parent=MsG0380017671.01.T01
Chr3 five_prime_UTR 99415798 99415929 99415798 ID=MsG0380017671.01.T01:five_prime_utr;Parent=MsG0380017671.01.T01
Chr3 CDS 99415930 99416288 99415930 ID=MsG0380017671.01.T01:cds;Parent=MsG0380017671.01.T01
Chr3 CDS 99417062 99417100 99417062 ID=MsG0380017671.01.T01:cds;Parent=MsG0380017671.01.T01
Chr3 CDS 99417339 99417409 99417339 ID=MsG0380017671.01.T01:cds;Parent=MsG0380017671.01.T01
Chr3 CDS 99417505 99417569 99417505 ID=MsG0380017671.01.T01:cds;Parent=MsG0380017671.01.T01
Chr3 CDS 99417725 99417814 99417725 ID=MsG0380017671.01.T01:cds;Parent=MsG0380017671.01.T01
Chr3 CDS 99417905 99417997 99417905 ID=MsG0380017671.01.T01:cds;Parent=MsG0380017671.01.T01
Chr3 CDS 99419200 99419613 99419200 ID=MsG0380017671.01.T01:cds;Parent=MsG0380017671.01.T01
Chr3 three_prime_UTR 99419614 99420023 99419614 ID=MsG0380017671.01.T01:three_prime_utr;Parent=MsG0380017671.01.T01
Gene Sequence

>MsG0380017671.01.T01

ATGTCTTCCATCGATGCGCCGATGGAGCCACTAACGTCGGGTGCCAGCAACCGTATAATTCCTCTTCTCAAAGCGTTCAGAGCCTCTCTCATCTTCGTCTACACATTCTTCCTCTCTTTTCTCTTGTTCGTTCTCCCTCGTCGGAATAGGGCGGCTCCACCGTCTTCTCCGAGGAAGAATTTGAAGAGAAGGTGGTTGGTTAGGGAAGAAGAGGATACGTTTAGGAGAAGAGCGTTGGCGCAGGATGTTGGAATGGGTCTTGATGATGGTTGTTGCCGGTGGAATACTTCGATTTTCTATGGTGTTAGAAATAATGCTTTGTTTTGTCGCTCTTGGTTCCCGGTTTACGGTGATCTTAAGGGTATTATGATCATCATTCACGGGCTTAATGAACACAGCGGAAGATATGCAGATTTCGCTAGGCAGTTAACATTGTGCAACTTTGGTGTCTATGCAATGGACTGGATAGGTCATGGAGGTAGCGATGGATTACATGGTTATGTTCCTTCTCTTGATCAAGTGGTTGCAGACACAGGAGCTTTCTTGGAAAAGATTAGATCAGAGAATCCTGGAATACCATGCTTTCTCTTTGGTCACTCAACTGGAGGGGCTGTGGTTTTGAAAGCGGCATCATGCCCTCACATTGAAGTGATGGTAGAAGGAATCATTTTAACATCACCAGCTTTGCGTGTGAAGCCATCTCATCCAATAGTTGGCGCTGTTGCTCCAATATTTTCTCTGGTAGCTCCAAGGTTCCAATTTAAAGGAGCAAACAAAAGAGGCATTCCAGTTTCTAGGGATCCAGCAGCTTTGTTGGCAAAGTACTCTGATCCTCTGGTCTACACAGGACCTATTAGAGTTCGAACTGGCCATGAAATACTGCGAATATCATCATACTTAATGCGAAACTTCAAGTCTGTGACAGTACCATTCTTTGTCCTGCATGGAACTGCTGATAAAGTAACTGATCCATTGGCTTCACAAGATTTATACAATAAGGCAGCTTCTGAGTTCAAAGACATAAAGCTTTATGATGGTTTCTTGCACGACCTTTTGTTTGAGCCGGAGCGTGAAGAGATAGCTCAGGACATTATCAACTGGATGGAAAACAGATTATTTACTAGCATTTGA
Protein sequence

>MsG0380017671.01.T01

MSSIDAPMEPLTSGASNRIIPLLKAFRASLIFVYTFFLSFLLFVLPRRNRAAPPSSPRKNLKRRWLVREEEDTFRRRALAQDVGMGLDDGCCRWNTSIFYGVRNNALFCRSWFPVYGDLKGIMIIIHGLNEHSGRYADFARQLTLCNFGVYAMDWIGHGGSDGLHGYVPSLDQVVADTGAFLEKIRSENPGIPCFLFGHSTGGAVVLKAASCPHIEVMVEGIILTSPALRVKPSHPIVGAVAPIFSLVAPRFQFKGANKRGIPVSRDPAALLAKYSDPLVYTGPIRVRTGHEILRISSYLMRNFKSVTVPFFVLHGTADKVTDPLASQDLYNKAASEFKDIKLYDGFLHDLLFEPEREEIAQDIINWMENRLFTSI*