AlfalfaGEDB | MsG0180005918.01

M. sativa cultivar ZhongmuNo.1 / MsG0180005918.01

KEGG: -
GO: GO:0005515
PFAM: PF00564

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180005918.01.T01	XP_013470141.1	95.052	768	17	3	1	764	1	751	0	1441

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180005918.01.T01	A0A072VQ77	95.052	768	17	3	1	764	1	751	0.0	1441

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080048507.01	MsG0180005918.01	0.802531	5.367857e-49	2.635584e-46
MsG0080048703.01	MsG0180005918.01	0.835130	2.007630e-56	2.432197e-53
MsG0080048727.01	MsG0180005918.01	-0.821937	3.094782e-53	2.553516e-50
MsG0080048773.01	MsG0180005918.01	-0.868166	7.991416e-66	2.862765e-62
MsG0080048780.01	MsG0180005918.01	-0.811965	5.375458e-51	3.374291e-48
MsG0080048820.01	MsG0180005918.01	-0.803547	3.308633e-49	1.667426e-46
MsG0080048849.01	MsG0180005918.01	-0.804543	2.053931e-49	1.061853e-46
MsG0080048925.01	MsG0180005918.01	-0.801142	1.035288e-48	4.907483e-46
MsG0080049002.01	MsG0180005918.01	-0.820185	7.839808e-53	6.160070e-50
MsG0080049068.01	MsG0180005918.01	-0.835202	1.925310e-56	2.337830e-53

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180005918.01.T01	MTR_1g109470	95.052	768	17	3	1	764	1	751	0.0	1441
MsG0180005918.01.T01	MTR_6g082400	36.030	791	311	32	14	764	4	639	1.27e-95	311
MsG0180005918.01.T01	MTR_8g106245	45.548	292	121	14	26	309	18	279	2.60e-51	189
MsG0180005918.01.T01	MTR_4g091530	47.959	196	89	6	24	216	6	191	4.56e-46	171
MsG0180005918.01.T01	MTR_2g010160	46.099	141	65	3	27	159	8	145	4.62e-32	130
MsG0180005918.01.T01	MTR_4g092850	47.143	140	61	5	27	159	9	142	1.60e-29	123
MsG0180005918.01.T01	MTR_2g461180	40.719	167	82	5	54	211	214	372	1.53e-26	117
MsG0180005918.01.T01	MTR_2g005700	35.669	157	74	4	53	194	11	155	9.39e-25	106
MsG0180005918.01.T01	MTR_4g116520	38.235	170	91	6	54	214	151	315	1.15e-24	111
MsG0180005918.01.T01	MTR_5g067120	47.788	113	55	3	51	162	23	132	9.59e-24	104

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180005918.01.T01	AT2G01190	45.638	791	271	30	27	764	36	720	2.69e-149	453
MsG0180005918.01.T01	AT3G18230	39.869	459	194	14	32	481	38	423	3.00e-63	224
MsG0180005918.01.T01	AT4G05150	37.847	288	124	11	22	280	36	297	4.61e-39	151
MsG0180005918.01.T01	AT5G09620	50.676	148	62	4	27	166	8	152	3.29e-35	141
MsG0180005918.01.T01	AT5G09620	50.676	148	62	4	27	166	8	152	5.10e-35	140
MsG0180005918.01.T01	AT5G64430	48.993	149	59	4	27	161	8	153	2.04e-32	132
MsG0180005918.01.T01	AT1G25300	53.913	115	46	1	46	160	2	109	4.48e-32	126
MsG0180005918.01.T01	AT5G16220	48.462	130	56	3	35	162	19	139	7.37e-26	112
MsG0180005918.01.T01	AT5G49920	38.356	146	71	4	53	194	8	138	5.49e-25	106
MsG0180005918.01.T01	AT1G79570	35.882	170	93	5	51	220	173	326	1.83e-23	107

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Find 247 sgRNAs with CRISPR-Local

Find 295 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACGGAGATTAACGAATCT+AGG	0.578203	1:-97542034	None:intergenic
AAAGCTCTCTGTTATGTCGG+CGG	0.682153	1:+97541891	MsG0180005918.01.T01:CDS
AAAGTCAAGTGGCGGTGGCT+CGG	0.513401	1:+97542967	MsG0180005918.01.T01:CDS
AAATTCAACCTGGAACTACA+AGG	0.546548	1:+97543308	MsG0180005918.01.T01:CDS
AACGAATCTAGGTCTTCGTT+TGG	0.425475	1:-97542023	None:intergenic
AATTATATGACAATCATTTC+AGG	0.285362	1:-97544410	None:intergenic
AATTCAACCTGGAACTACAA+GGG	0.679111	1:+97543309	MsG0180005918.01.T01:CDS
ACAACCACAGCAGAACCAAT+TGG	0.486447	1:-97542752	None:intergenic
ACAACCTGTGGCTGAGGAGT+TGG	0.580416	1:-97542851	None:intergenic
ACAGCAACAGCCCCATCACC+AGG	0.596464	1:+97543624	MsG0180005918.01.T01:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AGCATATTCATAAGCATAAC+TGG	-	Chr1:97543980-97543999	None:intergenic	30.0%
ATTTGCTCTTGATAAACAAC+AGG	-	Chr1:97543286-97543305	None:intergenic	30.0%
CAATTTCAACAAAAGTCAAG+TGG	+	Chr1:97542956-97542975	MsG0180005918.01.T01:CDS	30.0%
CAGAAATATTGTAACCTTGT+TGG	-	Chr1:97543675-97543694	None:intergenic	30.0%
GAAATATTGTAACCTTGTTG+GGG	-	Chr1:97543673-97543692	None:intergenic	30.0%
GGGAATAATCATATTGAACA+AGG	+	Chr1:97542332-97542351	MsG0180005918.01.T01:CDS	30.0%
TGGTTCTTTGATACCATAAA+CGG	+	Chr1:97542224-97542243	MsG0180005918.01.T01:CDS	30.0%
TTATATATGCAGTTCTCGTT+GGG	+	Chr1:97544210-97544229	MsG0180005918.01.T01:three_prime_UTR	30.0%
TTATTATAAACCTAGAGTGG+TGG	+	Chr1:97543174-97543193	MsG0180005918.01.T01:intron	30.0%
TTTATATATGCAGTTCTCGT+TGG	+	Chr1:97544209-97544228	MsG0180005918.01.T01:three_prime_UTR	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr1	gene	97541550	97544540	97541550	ID=MsG0180005918.01;Name=MsG0180005918.01
Chr1	mRNA	97541550	97544540	97541550	ID=MsG0180005918.01.T01;Parent=MsG0180005918.01;Name=MsG0180005918.01.T01;_AED=0.04;_eAED=0.05;_QI=128\|0\|0.66\|1\|1\|1\|3\|385\|764
Chr1	exon	97541550	97543017	97541550	ID=MsG0180005918.01.T01:exon:19583;Parent=MsG0180005918.01.T01
Chr1	exon	97543108	97543152	97543108	ID=MsG0180005918.01.T01:exon:19584;Parent=MsG0180005918.01.T01
Chr1	exon	97543246	97544540	97543246	ID=MsG0180005918.01.T01:exon:19585;Parent=MsG0180005918.01.T01
Chr1	five_prime_UTR	97541550	97541677	97541550	ID=MsG0180005918.01.T01:five_prime_utr;Parent=MsG0180005918.01.T01
Chr1	CDS	97541678	97543017	97541678	ID=MsG0180005918.01.T01:cds;Parent=MsG0180005918.01.T01
Chr1	CDS	97543108	97543152	97543108	ID=MsG0180005918.01.T01:cds;Parent=MsG0180005918.01.T01
Chr1	CDS	97543246	97544155	97543246	ID=MsG0180005918.01.T01:cds;Parent=MsG0180005918.01.T01
Chr1	three_prime_UTR	97544156	97544540	97544156	ID=MsG0180005918.01.T01:three_prime_utr;Parent=MsG0180005918.01.T01

Gene Sequence

>MsG0180005918.01.T01

ATGGAGGCGCAACCCCAACCTCCAACGCCGTCAACCGGACCACCGTTATCCTCCGTGGCTCCACCACCACCACACCTCAACTACCCCGATTCCGTTGATTCCTCCCCTCGTTCCCGCAACAACGACTCATGGGACGAACCTTTCCCTCCAGCCACATCCAAACTCCGTCTGATGTGCAGTTACGGTGGCCACATCGTCCCTCGTCCAACCGACAAAGCTCTCTGTTATGTCGGCGGTGACACTCGCATCGTTGTTGTTGAACGCGCCACCTCACTCGCGGATTTATCCACGCGCCTCTCCAAAACCTTGCTTAATGGAAGACCTTTCACTTTCAAGTATCAGCTTCCAAACGAAGACCTAGATTCGTTAATCTCCGTTTCAACCGATGAAGATTTAGAAAACATGATCGATGAATACGATCGAACGAATTCTACGAATTCTTCTGTGAAACCCTCGCGAATTCGTCTTTTTCTGTTTCCATCGAAACCTGAATCTGCTCAATCAATTCCACCGCAAATTCTCGATCCTACTGTTAGATCCGGTGAATGGTTCTTTGATACCATAAACGGTGCCGTTTCGTCGCTTAATCGAGGTTTTTCTGATTCTGCTGCTTCTTCTGTGAATCATCTTTTAGGTCTTGATGATGATGTTGCTGGGAATAATCATATTGAACAAGGTTCCACTGGAGAAGCTCCTGATGGTGTTTCTCAACCTGGATCTTTTGGGAATTGTAAGAATTTGAAGCAGGATGTTCATTCTGTTCCTGATTCGCCTATGATGGAGACTTCTTCGTCCTTTGGTTCGACTTCTTCGTCTCCGTCTTTGGCGAATTTGCCTCCTATTAGGGTGCATGTTGAAGATGGTGGTTCTGGTGGTGTTAGGGTTCAACAGCAGCAACAATTGCAACAGCAGCAGCAGCAGCAGGATCAGAAGGTTTTGGGGATTGATGAACAGTTTGCTCAAATGGTTGTTGGTGTTGGTGGTATTGGACAGAGGCTACAGGATGAGGGTTTTGCTGTCATGTCTTCACCGCCTCATCCTCCAGTGCCAACTACGCTGGCGGCGGTTGGTGTTCCAATTGGTTCTGCTGTGGTTGTTGGTGATTACCAGAATAGGGTATTCTCTGATGATGAGAGATCGGATCATGGTGTGCCTGTGGGATATAGAAAACCACCAACTCCTCAGCCACAGGTTGTTCAAGTTCAACCTCAAGCTCAAAATCAAGCTCAGGCACAATCTCAGGCACAGTCACAAGCACAGACACAGTCACAAGCTCCTCAATTTCAACAAAAGTCAAGTGGCGGTGGCTCGGATTTGCCTTCTCCTGATTCAGTTTCAAGGATTGTTCAATTCATTAACGTGTATGTTGTTAATTGCACTGATTTTGATAGTAGTCTTTCAAATGCGATGTCACGTCAAAAACCTGTTGTTTATCAAGAGCAAATTCAAATTCAACCTGGAACTACAAGGGTGGATACAAAAATCAATTTGTCCGATCCACATGGTAGGATCCAGGTGCAGCAACATGTACAGGATCCTGGTTATTTGCTGCAACAGCAATTTGAACTCCAGCAGCAGCAACAACAATTTGAACTCCATCAGCAGCAACAACAGCCTCAACATCAGCCGCAGCAACCACAACCTCAACATCAGCCGCAGCAGCAACAACAGCTTCAACATCATCAGCAGCAGCAGTTTATTCATGGGGGACACTACATTCATCATAACCCTGCAATTCCTACATACTATCCTGTATATCCATCACAGCAACAGCCCCATCACCAGGTTTACTATGTACCTGCAAGACAGCCCCAACAAGGTTACAATATTTCTGTGCAGCAGGCTAATATGGGTGAATCTGCCACAACAATCCCTTCTAGCAGACCCCAAAATCCTCCAACCCCCACCACATTGGTTCAACAAAATGCAGCTTACAACCCCATTAGAAGTGCTCCCCTACCCAAAACTGAAATGACGGCTGCTGCTTACAGAGCTGCAACTGGAGGCAGTCCTCAATTTGTGCAAGTTCCTACAAGTCAGCATCAACAGCAGTATGTCACTTACTCCCAGATCCACCATCCGTCTCAGTCCATGGCTCCTAATCCTGCTGCCCCTGCCAGTTATGCTTATGAATATGCTGATCCTGCTCAAGTATACTACTCTCAGCCTATGGCGCCCACAATGCCTTCACAGTACCAGACCATGGCAGCTGCTACTATGATGCAACCGGAAGTTCCTGCACAGCATCCGTCAGACGGCATGAAGCAGCAGATAAGAACCTCACAGCCACTATAA

Protein sequence

>MsG0180005918.01.T01

MEAQPQPPTPSTGPPLSSVAPPPPHLNYPDSVDSSPRSRNNDSWDEPFPPATSKLRLMCSYGGHIVPRPTDKALCYVGGDTRIVVVERATSLADLSTRLSKTLLNGRPFTFKYQLPNEDLDSLISVSTDEDLENMIDEYDRTNSTNSSVKPSRIRLFLFPSKPESAQSIPPQILDPTVRSGEWFFDTINGAVSSLNRGFSDSAASSVNHLLGLDDDVAGNNHIEQGSTGEAPDGVSQPGSFGNCKNLKQDVHSVPDSPMMETSSSFGSTSSSPSLANLPPIRVHVEDGGSGGVRVQQQQQLQQQQQQQDQKVLGIDEQFAQMVVGVGGIGQRLQDEGFAVMSSPPHPPVPTTLAAVGVPIGSAVVVGDYQNRVFSDDERSDHGVPVGYRKPPTPQPQVVQVQPQAQNQAQAQSQAQSQAQTQSQAPQFQQKSSGGGSDLPSPDSVSRIVQFINVYVVNCTDFDSSLSNAMSRQKPVVYQEQIQIQPGTTRVDTKINLSDPHGRIQVQQHVQDPGYLLQQQFELQQQQQQFELHQQQQQPQHQPQQPQPQHQPQQQQQLQHHQQQQFIHGGHYIHHNPAIPTYYPVYPSQQQPHHQVYYVPARQPQQGYNISVQQANMGESATTIPSSRPQNPPTPTTLVQQNAAYNPIRSAPLPKTEMTAAAYRAATGGSPQFVQVPTSQHQQQYVTYSQIHHPSQSMAPNPAAPASYAYEYADPAQVYYSQPMAPTMPSQYQTMAAATMMQPEVPAQHPSDGMKQQIRTSQPL*