AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380017767.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380017767.01.T01 MTR_3g111790 98.964 386 4 0 1 386 1 386 0.0 805
MsG0380017767.01.T01 MTR_1g022075 69.393 379 113 2 8 386 1 376 0.0 561
MsG0380017767.01.T01 MTR_5g019880 56.604 371 156 5 5 373 7 374 2.71e-148 430
MsG0380017767.01.T01 MTR_5g081550 52.088 407 164 12 8 397 1 393 1.43e-133 394
MsG0380017767.01.T01 MTR_3g069720 50.758 396 173 8 8 383 1 394 4.70e-133 394
MsG0380017767.01.T01 MTR_1g106875 50.658 304 143 5 75 373 119 420 1.25e-95 298
MsG0380017767.01.T01 MTR_1g018620 47.115 312 160 4 66 373 109 419 4.33e-93 292
MsG0380017767.01.T01 MTR_3g102670 46.382 304 146 6 80 373 93 389 1.06e-88 279
MsG0380017767.01.T01 MTR_6g445110 39.946 368 201 8 21 373 17 379 5.51e-82 261
MsG0380017767.01.T01 MTR_1g054670 37.537 341 191 7 41 377 28 350 4.70e-68 224
MsG0380017767.01.T01 MTR_3g111800 100.000 87 0 0 390 476 31 117 7.92e-55 181
MsG0380017767.01.T01 MTR_3g111800 100.000 87 0 0 390 476 31 117 1.91e-54 181
MsG0380017767.01.T01 MTR_5g019900 56.452 124 47 3 390 513 50 166 1.46e-33 125
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380017767.01.T01 AT1G75160 59.278 388 136 4 8 373 3 390 3.85e-166 476
MsG0380017767.01.T01 AT5G66740 58.065 372 151 5 8 377 1 369 7.60e-152 439
MsG0380017767.01.T01 AT5G05840 50.384 391 169 8 8 376 1 388 6.62e-127 378
MsG0380017767.01.T01 AT3G55720 43.909 394 188 9 8 373 1 389 1.88e-100 310
MsG0380017767.01.T01 AT3G19540 46.082 319 168 3 58 373 116 433 1.56e-96 301
MsG0380017767.01.T01 AT1G49840 46.835 316 164 3 61 373 127 441 1.08e-95 300
MsG0380017767.01.T01 AT1G27690 44.695 311 165 4 75 379 105 414 2.20e-89 281
MsG0380017767.01.T01 AT1G79420 38.608 316 177 6 75 373 83 398 2.94e-70 231
MsG0380017767.01.T01 AT5G06610 37.082 329 183 7 67 384 47 362 1.19e-64 215
MsG0380017767.01.T01 AT4G36660 65.169 89 29 1 390 478 59 145 9.84e-30 115
MsG0380017767.01.T01 AT5G65650 57.282 103 40 2 390 492 56 154 9.20e-29 113
MsG0380017767.01.T01 AT1G19380 58.947 95 31 2 385 479 45 131 1.11e-26 105

Find 161 sgRNAs with CRISPR-Local

Find 277 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACCCCTTCGTCGCTTCTTTC+AGG 0.160011 3:+100460418 MsG0380017767.01.T01:CDS
GAATGGATTGAGGTTGTTTA+TGG 0.200987 3:-100462286 None:intergenic
CCCTTTGCCTCAACTGGCTT+GGG 0.203973 3:-100459168 None:intergenic
AAGGAAAAGACTCCGTAATT+TGG 0.220976 3:+100460814 MsG0380017767.01.T01:CDS
GGCAAAACAATCCAGATTTA+TGG 0.229633 3:+100460285 MsG0380017767.01.T01:CDS
AATTGTAATGCACACAATAT+TGG 0.245956 3:+100460719 MsG0380017767.01.T01:CDS
TGCTCCTCTTATTCCTCTTC+AGG 0.246021 3:+100459796 MsG0380017767.01.T01:CDS
CCATTGGATTGCCTCAGTTT+TGG 0.254719 3:+100462533 MsG0380017767.01.T01:CDS
AACAAATGATTGAGGAAATA+TGG 0.273846 3:+100460952 MsG0380017767.01.T01:CDS
TGACTTGGATTCTATGATTC+TGG 0.274937 3:+100462314 MsG0380017767.01.T01:CDS
ATTTGGGAGGTAACATTATA+AGG 0.283962 3:-100462924 None:intergenic
AGATACCCCTTTGCCTCAAC+TGG 0.293484 3:-100459174 None:intergenic
AGAGGAAATGTTGACCAATA+TGG 0.294932 3:+100459646 MsG0380017767.01.T01:CDS
CCATCTGCCTTGTCAAAATT+AGG 0.312661 3:-100459593 None:intergenic
AGACAATTTCCACGCTTTAT+AGG 0.322067 3:+100460907 MsG0380017767.01.T01:CDS
AGGAAAAGACTCCGTAATTT+GGG 0.333323 3:+100460815 MsG0380017767.01.T01:CDS
ATTGTAATGCACACAATATT+GGG 0.336668 3:+100460720 MsG0380017767.01.T01:CDS
CCCCTTTGCCTCAACTGGCT+TGG 0.364518 3:-100459169 None:intergenic
GTGAGAATGAAGACAGTTAA+AGG 0.367176 3:+100460795 MsG0380017767.01.T01:CDS
TACGACGGAACAATCTCTAA+TGG 0.376229 3:-100459846 None:intergenic
AATTCCAAGCACCATAAATC+TGG 0.377158 3:-100460296 None:intergenic
CCCCTTGCCTCAACGGACTT+GGG 0.384494 3:-100459367 None:intergenic
AATGTTTGTTTCCCAAATTA+CGG 0.385925 3:-100460826 None:intergenic
AGATTTATGGTGCTTGGAAT+TGG 0.386209 3:+100460298 MsG0380017767.01.T01:CDS
TTGAGAAGAGGATTGGTTCC+AGG 0.393539 3:-100460366 None:intergenic
CAATCCAGATTTATGGTGCT+TGG 0.396630 3:+100460292 MsG0380017767.01.T01:CDS
CAATCCATTCTCTGATGACT+TGG 0.397783 3:+100462299 MsG0380017767.01.T01:CDS
GTCAACATTTCCTCTGGAAT+AGG 0.401725 3:-100459638 None:intergenic
TCACGTACTTAAATATTAGT+TGG 0.406630 3:-100459512 None:intergenic
CTTCAGCTTTGCCTCTTGAA+TGG 0.407585 3:-100460244 None:intergenic
GGGATGATATGTTTGTTGCC+TGG 0.419826 3:-100459346 None:intergenic
AAAATTACTGCTGGTAGTAA+TGG 0.420643 3:+100460335 MsG0380017767.01.T01:CDS
ACCGCATTGCTTAAGCTTGT+GGG 0.425363 3:+100459773 MsG0380017767.01.T01:CDS
TGAACCTGAAGAGGAATAAG+AGG 0.431256 3:-100459800 None:intergenic
AACTTTCTCATGGCTTGTCT+TGG 0.434810 3:-100459566 None:intergenic
AGTGGAGGAGAGGGAGAAGG+TGG 0.441030 3:+100462468 MsG0380017767.01.T01:CDS
AGCTAAGGGTCAGAGCGAAT+TGG 0.443184 3:+100462859 MsG0380017767.01.T01:CDS
AGAAATAGGAAGTGGAGGAG+AGG 0.443708 3:+100462458 MsG0380017767.01.T01:intron
TGCTTGGAATTGGTAGTCTC+TGG 0.445594 3:+100460308 MsG0380017767.01.T01:CDS
CACCGCATTGCTTAAGCTTG+TGG 0.449243 3:+100459772 MsG0380017767.01.T01:CDS
GAAACCAGTGGTGCCCATAT+TGG 0.450559 3:-100459660 None:intergenic
CAAGTTGCTGATAAGTCATC+TGG 0.451015 3:+100459722 MsG0380017767.01.T01:CDS
AGATGGGTTGGATACGGTTC+TGG 0.451475 3:+100459610 MsG0380017767.01.T01:CDS
TGGAGGTACTTTGTGCTTGG+AGG 0.456963 3:-100460689 None:intergenic
ACAGCGGCGTCTCGAACTGC+TGG 0.461164 3:-100462601 None:intergenic
GAGGAAATGTTGACCAATAT+GGG 0.462092 3:+100459647 MsG0380017767.01.T01:CDS
GGAAGTGGAGGAGAGGGAGA+AGG 0.462877 3:+100462465 MsG0380017767.01.T01:intron
TGTTGGAGGTACTTTGTGCT+TGG 0.463883 3:-100460692 None:intergenic
GAAATAGGAAGTGGAGGAGA+GGG 0.464402 3:+100462459 MsG0380017767.01.T01:intron
CAACAATATGTGGCAGCAAC+CGG 0.466994 3:+100460122 MsG0380017767.01.T01:CDS
GTAGTAATGGCAAAGTATCC+TGG 0.467234 3:+100460348 MsG0380017767.01.T01:CDS
CCCCAAGTCCGTTGAGGCAA+GGG 0.467265 3:+100459366 MsG0380017767.01.T01:five_prime_UTR
GGATGATATGTTTGTTGCCT+GGG 0.470001 3:-100459345 None:intergenic
TCCTAGATGCTGAATGCGTA+GGG 0.471485 3:+100460607 MsG0380017767.01.T01:CDS
ATATTGGTCAACATTTCCTC+TGG 0.471651 3:-100459644 None:intergenic
AAGAAGCGACGAAGGGGTCT+AGG 0.474959 3:-100460413 None:intergenic
CCCAAGCCAGTTGAGGCAAA+GGG 0.477240 3:+100459168 MsG0380017767.01.T01:five_prime_UTR
ACGACGGAACAATCTCTAAT+GGG 0.477836 3:-100459845 None:intergenic
GTTGACATGTGCAGAGCAGC+AGG 0.478114 3:+100462816 MsG0380017767.01.T01:intron
AAGTAGGAGGTTTCGTGCTA+TGG 0.479912 3:+100460264 MsG0380017767.01.T01:CDS
TTGACCAATATGGGCACCAC+TGG 0.483940 3:+100459656 MsG0380017767.01.T01:CDS
AGGACTACTTGTCAAATTTG+AGG 0.484005 3:+100460761 MsG0380017767.01.T01:CDS
TTTGGGCAGAGAGATTCAAT+TGG 0.484487 3:+100460086 MsG0380017767.01.T01:intron
GGGAGGTAACATTATAAGGA+AGG 0.489480 3:-100462920 None:intergenic
CAAGGCAGATGGGTTGGATA+CGG 0.489717 3:+100459604 MsG0380017767.01.T01:CDS
CCCCTACGCATTCAGCATCT+AGG 0.492422 3:-100460608 None:intergenic
TTGCAAAACATGTATGCAAT+GGG 0.492428 3:+100460167 MsG0380017767.01.T01:CDS
CCCTTGCCTCAACGGACTTG+GGG 0.493460 3:-100459366 None:intergenic
CTAGAAAGAGAGAGGGAGGG+AGG 0.494211 3:+100459195 MsG0380017767.01.T01:five_prime_UTR
GAAAAGGTTGAGAAGAGGAT+TGG 0.497410 3:-100460373 None:intergenic
TTGGGCAGAGAGATTCAATT+GGG 0.500645 3:+100460087 MsG0380017767.01.T01:intron
TGAAGCTGCTTATGAGCACT+TGG 0.501959 3:+100462567 MsG0380017767.01.T01:CDS
GGTTGTTTATGGACAATTTG+AGG 0.504394 3:-100462275 None:intergenic
AAGAAAACTTAAGCAAGCTA+AGG 0.505421 3:+100462844 MsG0380017767.01.T01:CDS
CGCAGTCATAGCAACTCCAT+TGG 0.506684 3:+100462517 MsG0380017767.01.T01:CDS
CCTTTGCCTCAACTGGCTTG+GGG 0.508251 3:-100459167 None:intergenic
CCCAAGTCCGTTGAGGCAAG+GGG 0.509300 3:+100459367 MsG0380017767.01.T01:five_prime_UTR
TCTGGTTTCAAAATTACTGC+TGG 0.509410 3:+100460326 MsG0380017767.01.T01:CDS
CAAATTTGAGGACACTAAGT+TGG 0.509456 3:+100460773 MsG0380017767.01.T01:CDS
CATTACAATTTCAGTGTTGG+AGG 0.512089 3:-100460706 None:intergenic
GTAACATTATAAGGAAGGGA+TGG 0.514289 3:-100462915 None:intergenic
CCCCAAGCCAGTTGAGGCAA+AGG 0.515170 3:+100459167 MsG0380017767.01.T01:five_prime_UTR
AGAAGGTGGTGAGGCACATG+TGG 0.515793 3:+100462482 MsG0380017767.01.T01:CDS
GCGGTGAATTCATTATTTGA+AGG 0.516804 3:-100459755 None:intergenic
GCACCACTGGTTTCAATCGT+TGG 0.518096 3:+100459669 MsG0380017767.01.T01:CDS
ATGGTTCAGAGATGCGTCAT+GGG 0.518464 3:+100460204 MsG0380017767.01.T01:CDS
ATTGCAAAACATGTATGCAA+TGG 0.521413 3:+100460166 MsG0380017767.01.T01:CDS
GTATCTAGAAAGAGAGAGGG+AGG 0.521966 3:+100459191 MsG0380017767.01.T01:five_prime_UTR
GTTGTTTATGGACAATTTGA+GGG 0.524857 3:-100462274 None:intergenic
ATTATCAGGGGTTGGATCCA+AGG 0.528639 3:+100460568 MsG0380017767.01.T01:intron
AGAATGAAAAGGTTGAGAAG+AGG 0.530424 3:-100460378 None:intergenic
ATTAGGACACAACTTTCTCA+TGG 0.535033 3:-100459576 None:intergenic
ATTGAAGTTGAAGAGGAAGT+TGG 0.535197 3:-100462672 None:intergenic
GAATCCAAGTCATCAGAGAA+TGG 0.536527 3:-100462303 None:intergenic
GTGCATTACAATTTCAGTGT+TGG 0.537211 3:-100460709 None:intergenic
ATTCAATGCACCTTGTCCAC+CGG 0.538168 3:-100460141 None:intergenic
TCCCCAAGTCCGTTGAGGCA+AGG 0.539159 3:+100459365 MsG0380017767.01.T01:five_prime_UTR
GCGCAGTGCTAGTGACATCT+TGG 0.540565 3:-100462635 None:intergenic
GGGCCTCTGTTAGAATGAAA+AGG 0.540726 3:-100460389 None:intergenic
TCTCATGATCTGAGGGAGGA+AGG 0.542452 3:-100461025 None:intergenic
AATTGAGAAATAGGAAGTGG+AGG 0.547385 3:+100462453 MsG0380017767.01.T01:intron
ATTTCCACGCTTTATAGGTA+CGG 0.549216 3:+100460912 MsG0380017767.01.T01:CDS
ATGGGAGAAGTTAGAATACA+TGG 0.550090 3:+100460185 MsG0380017767.01.T01:CDS
AGAGGCAAAGCTGAAGTAGG+AGG 0.552155 3:+100460251 MsG0380017767.01.T01:CDS
GTGGCAGCAACCGGTGGACA+AGG 0.552242 3:+100460131 MsG0380017767.01.T01:CDS
ATAATATCAAGAAAGAGATA+AGG 0.553482 3:-100459448 None:intergenic
TGAATGGACGCTGTTATCAT+CGG 0.555263 3:-100460228 None:intergenic
TCAAGAGGCAAAGCTGAAGT+AGG 0.557153 3:+100460248 MsG0380017767.01.T01:CDS
GATGATTATAGATGTGTTGG+TGG 0.557671 3:+100460861 MsG0380017767.01.T01:CDS
CATGGTTCAGAGATGCGTCA+TGG 0.558825 3:+100460203 MsG0380017767.01.T01:CDS
ATACATAGTACAACAATATG+TGG 0.563329 3:+100460112 MsG0380017767.01.T01:CDS
ATTGATGATTATAGATGTGT+TGG 0.564981 3:+100460858 MsG0380017767.01.T01:CDS
AGGAGAGGGAGAAGGTGGTG+AGG 0.567478 3:+100462473 MsG0380017767.01.T01:CDS
CTTGGCGATTTCTGAAACAG+CGG 0.569607 3:-100462617 None:intergenic
GGAGGTAACATTATAAGGAA+GGG 0.569864 3:-100462919 None:intergenic
TTCCTAGATGCTGAATGCGT+AGG 0.572883 3:+100460606 MsG0380017767.01.T01:CDS
GCATTAACATAGCTCATGGT+GGG 0.574990 3:+100460883 MsG0380017767.01.T01:CDS
TAGTTCTCTCTCATGATCTG+AGG 0.575629 3:-100461033 None:intergenic
TAATCACAAACAAATGATTG+AGG 0.575776 3:+100460944 MsG0380017767.01.T01:CDS
TGATCAGATTGAACCTGAAG+AGG 0.575885 3:-100459809 None:intergenic
TAACATTATAAGGAAGGGAT+GGG 0.576312 3:-100462914 None:intergenic
AACAAAACAAGAAAGAGAGA+AGG 0.580177 3:-100459244 None:intergenic
AGAAAACTTAAGCAAGCTAA+GGG 0.580348 3:+100462845 MsG0380017767.01.T01:CDS
AGTTCTCTCTCATGATCTGA+GGG 0.591370 3:-100461032 None:intergenic
GGCTACTTTAGCCAACGCAC+AGG 0.592080 3:+100460741 MsG0380017767.01.T01:CDS
TATCTAGAAAGAGAGAGGGA+GGG 0.592396 3:+100459192 MsG0380017767.01.T01:five_prime_UTR
TCTTCAACTTCAATCACCAC+CGG 0.594507 3:+100462681 MsG0380017767.01.T01:CDS
TCTGGATGATCTAGATGTGT+TGG 0.594613 3:+100462332 MsG0380017767.01.T01:CDS
CCAAAACTGAGGCAATCCAA+TGG 0.595168 3:-100462533 None:intergenic
TACCTGAAAGAAGCGACGAA+GGG 0.595208 3:-100460420 None:intergenic
AAGCGACGAAGGGGTCTAGG+AGG 0.597519 3:-100460410 None:intergenic
TGACAAGTAGTCCTGTGCGT+TGG 0.599783 3:-100460752 None:intergenic
GATAACAGCGTCCATTCAAG+AGG 0.600227 3:+100460233 MsG0380017767.01.T01:CDS
AACAAGTTAGCTATACACCT+TGG 0.605434 3:-100460585 None:intergenic
AGGGGTATCTAGAAAGAGAG+AGG 0.609725 3:+100459187 MsG0380017767.01.T01:five_prime_UTR
GAAGGTGGTGAGGCACATGT+GGG 0.612781 3:+100462483 MsG0380017767.01.T01:CDS
TGGGTTGGATACGGTTCTGG+AGG 0.616121 3:+100459613 MsG0380017767.01.T01:CDS
TATCATCCCCAAGCCAGTTG+AGG 0.625469 3:+100459161 MsG0380017767.01.T01:five_prime_UTR
GGTGGTGATTGAAGTTGAAG+AGG 0.627008 3:-100462679 None:intergenic
AGCGACGAAGGGGTCTAGGA+GGG 0.628272 3:-100460409 None:intergenic
TTACCTGAAAGAAGCGACGA+AGG 0.631053 3:-100460421 None:intergenic
AATCTGATCATACTTTGACT+CGG 0.631496 3:+100459822 MsG0380017767.01.T01:CDS
AGTCATCAGAGAATGGATTG+AGG 0.633243 3:-100462296 None:intergenic
ACCTGAAAGAAGCGACGAAG+GGG 0.640507 3:-100460419 None:intergenic
CAATATGTGGCAGCAACCGG+TGG 0.644017 3:+100460125 MsG0380017767.01.T01:CDS
GGCATTAACATAGCTCATGG+TGG 0.646714 3:+100460882 MsG0380017767.01.T01:CDS
GGGGTATCTAGAAAGAGAGA+GGG 0.647591 3:+100459188 MsG0380017767.01.T01:five_prime_UTR
TCTGGAGGTTCCTATTCCAG+AGG 0.651137 3:+100459628 MsG0380017767.01.T01:CDS
GGTGGCATTAACATAGCTCA+TGG 0.655773 3:+100460879 MsG0380017767.01.T01:CDS
TATCATCCCCAAGTCCGTTG+AGG 0.667315 3:+100459360 MsG0380017767.01.T01:five_prime_UTR
TCTCTCTCATGATCTGAGGG+AGG 0.674252 3:-100461029 None:intergenic
CCAAGCCAGTTGAGGCAAAG+GGG 0.674761 3:+100459169 MsG0380017767.01.T01:five_prime_UTR
CTGCCAACGATTGAAACCAG+TGG 0.678038 3:-100459672 None:intergenic
TGGTTCAGAGATGCGTCATG+GGG 0.681001 3:+100460205 MsG0380017767.01.T01:CDS
AAAGCTTCCAACCAAAACTG+AGG 0.684190 3:-100462544 None:intergenic
CCTAGATGCTGAATGCGTAG+GGG 0.697262 3:+100460608 MsG0380017767.01.T01:CDS
CCAAGTCCGTTGAGGCAAGG+GGG 0.704680 3:+100459368 MsG0380017767.01.T01:five_prime_UTR
GGGATACGCAGAAAGAGACG+AGG 0.708805 3:+100459388 MsG0380017767.01.T01:five_prime_UTR
ACCCACAAGCTTAAGCAATG+CGG 0.717875 3:-100459774 None:intergenic
CGCGCCGTACCTATAAAGCG+TGG 0.721168 3:-100460916 None:intergenic
CACGCTTTATAGGTACGGCG+CGG 0.738073 3:+100460917 MsG0380017767.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATCAAGATAAAAAAAAAAAA+AGG - Chr3:100461469-100461488 None:intergenic 10.0%
!! CGTAAAAAATATATTAATAA+TGG + Chr3:100461381-100461400 MsG0380017767.01.T01:intron 10.0%
!! TAAAAAATTTAATCAAACAT+AGG - Chr3:100461622-100461641 None:intergenic 10.0%
!! AACGTTAAATTATGTATTAT+TGG - Chr3:100462360-100462379 None:intergenic 15.0%
!! TATAATGTAAATGATGTATA+TGG + Chr3:100459950-100459969 MsG0380017767.01.T01:intron 15.0%
!! AAAAATGACAAGAAATCAAA+AGG - Chr3:100459480-100459499 None:intergenic 20.0%
!! AACCTTAAAAATTGTATGTT+AGG + Chr3:100461824-100461843 MsG0380017767.01.T01:intron 20.0%
!! ACTATATATGTCATACAAAT+AGG - Chr3:100459978-100459997 None:intergenic 20.0%
!! ATAATATCAAGAAAGAGATA+AGG - Chr3:100459451-100459470 None:intergenic 20.0%
!! TATGACTTAAATACTACTTT+GGG + Chr3:100462009-100462028 MsG0380017767.01.T01:intron 20.0%
!! TTAAAAATTGTATGTTAGGA+TGG + Chr3:100461828-100461847 MsG0380017767.01.T01:intron 20.0%
!!! ATCCTAACATACAATTTTTA+AGG - Chr3:100461829-100461848 None:intergenic 20.0%
!!! ATTTATGTTTTTACTTTCCA+TGG + Chr3:100462794-100462813 MsG0380017767.01.T01:intron 20.0%
!!! CATTTTATTCTTCTCTTTTA+TGG + Chr3:100459888-100459907 MsG0380017767.01.T01:intron 20.0%
!!! GAAGTTGATTTTAACATTTT+TGG + Chr3:100460984-100461003 MsG0380017767.01.T01:CDS 20.0%
!!! TTTTTATAAGAAAATGCTAG+TGG + Chr3:100460009-100460028 MsG0380017767.01.T01:intron 20.0%
! AACAAATGATTGAGGAAATA+TGG + Chr3:100460952-100460971 MsG0380017767.01.T01:CDS 25.0%
! AAGTAGTATTTAAGTCATAG+TGG - Chr3:100462008-100462027 None:intergenic 25.0%
! AATGTTTGTTTCCCAAATTA+CGG - Chr3:100460829-100460848 None:intergenic 25.0%
! AATTGTAATGCACACAATAT+TGG + Chr3:100460719-100460738 MsG0380017767.01.T01:CDS 25.0%
! ATAAACTCAAATATCAACCT+TGG + Chr3:100461719-100461738 MsG0380017767.01.T01:intron 25.0%
! ATACATAGTACAACAATATG+TGG + Chr3:100460112-100460131 MsG0380017767.01.T01:CDS 25.0%
! ATATTACTATTTCAACTGTG+GGG + Chr3:100462064-100462083 MsG0380017767.01.T01:intron 25.0%
! ATGACTTAAATACTACTTTG+GGG + Chr3:100462010-100462029 MsG0380017767.01.T01:intron 25.0%
! ATTGTAATGCACACAATATT+GGG + Chr3:100460720-100460739 MsG0380017767.01.T01:CDS 25.0%
! CATACAATATAGACAAGTAT+AGG + Chr3:100461138-100461157 MsG0380017767.01.T01:intron 25.0%
! CTATGACTTAAATACTACTT+TGG + Chr3:100462008-100462027 MsG0380017767.01.T01:intron 25.0%
! GATATTACTATTTCAACTGT+GGG + Chr3:100462063-100462082 MsG0380017767.01.T01:intron 25.0%
! GTTTCTTAAAAATGTGAGAT+GGG - Chr3:100461807-100461826 None:intergenic 25.0%
! TAATCACAAACAAATGATTG+AGG + Chr3:100460944-100460963 MsG0380017767.01.T01:CDS 25.0%
! TCACGTACTTAAATATTAGT+TGG - Chr3:100459515-100459534 None:intergenic 25.0%
! TGATATTACTATTTCAACTG+TGG + Chr3:100462062-100462081 MsG0380017767.01.T01:intron 25.0%
! TGATCTTTCAATTGAGAAAT+AGG + Chr3:100462444-100462463 MsG0380017767.01.T01:intron 25.0%
! TTATAGCATATAAGCTTATG+TGG - Chr3:100461684-100461703 None:intergenic 25.0%
!! AATGCTAGTGGATAATTTAT+AGG + Chr3:100460021-100460040 MsG0380017767.01.T01:intron 25.0%
!! ACTACAATCAAAGTGATTTT+GGG + Chr3:100461919-100461938 MsG0380017767.01.T01:intron 25.0%
!! AGAGTTTTCATTGAAATGTT+TGG + Chr3:100460068-100460087 MsG0380017767.01.T01:intron 25.0%
!! ATTGATGATTATAGATGTGT+TGG + Chr3:100460858-100460877 MsG0380017767.01.T01:CDS 25.0%
!! ATTTTCTTCTATCATCACTT+GGG + Chr3:100459286-100459305 MsG0380017767.01.T01:five_prime_UTR 25.0%
!! GAGTTTTCATTGAAATGTTT+GGG + Chr3:100460069-100460088 MsG0380017767.01.T01:intron 25.0%
!! TACTACAATCAAAGTGATTT+TGG + Chr3:100461918-100461937 MsG0380017767.01.T01:intron 25.0%
!!! AACAAATCTATGTTTTTGTG+AGG + Chr3:100461851-100461870 MsG0380017767.01.T01:intron 25.0%
!!! TAACATTTTTGGATTGTCTA+TGG + Chr3:100460995-100461014 MsG0380017767.01.T01:CDS 25.0%
!!! TTGTGATTTGTTTTAACTGT+TGG + Chr3:100460535-100460554 MsG0380017767.01.T01:intron 25.0%
AAAATTACTGCTGGTAGTAA+TGG + Chr3:100460335-100460354 MsG0380017767.01.T01:CDS 30.0%
AACAAAACAAGAAAGAGAGA+AGG - Chr3:100459247-100459266 None:intergenic 30.0%
AAGAAAACTTAAGCAAGCTA+AGG + Chr3:100462844-100462863 MsG0380017767.01.T01:CDS 30.0%
AAGCTTATGTGGTCAAAATA+AGG - Chr3:100461673-100461692 None:intergenic 30.0%
AATCTGATCATACTTTGACT+CGG + Chr3:100459822-100459841 MsG0380017767.01.T01:CDS 30.0%
ACATAAACCAAAGAGCTATA+AGG - Chr3:100462239-100462258 None:intergenic 30.0%
ACTATGTGATCTTAGTTTAC+CGG - Chr3:100462703-100462722 None:intergenic 30.0%
AGAAAACTTAAGCAAGCTAA+GGG + Chr3:100462845-100462864 MsG0380017767.01.T01:CDS 30.0%
AGCTTATGTGGTCAAAATAA+GGG - Chr3:100461672-100461691 None:intergenic 30.0%
AGTACGTGAAAAAGATAATC+TGG + Chr3:100459526-100459545 MsG0380017767.01.T01:five_prime_UTR 30.0%
ATTGCAAAACATGTATGCAA+TGG + Chr3:100460166-100460185 MsG0380017767.01.T01:CDS 30.0%
GAAAACTGAGAGATATGTAA+TGG + Chr3:100461319-100461338 MsG0380017767.01.T01:intron 30.0%
GGTTTCTTAAAAATGTGAGA+TGG - Chr3:100461808-100461827 None:intergenic 30.0%
GTTGTTTATGGACAATTTGA+GGG - Chr3:100462277-100462296 None:intergenic 30.0%
TATTTGCTCTCTATGTACTT+TGG - Chr3:100462158-100462177 None:intergenic 30.0%
TGGATAATTTATAGGAAGAG+CGG + Chr3:100460029-100460048 MsG0380017767.01.T01:intron 30.0%
TTCAATTGAGAAATAGGAAG+TGG + Chr3:100462450-100462469 MsG0380017767.01.T01:intron 30.0%
TTGCAAAACATGTATGCAAT+GGG + Chr3:100460167-100460186 MsG0380017767.01.T01:CDS 30.0%
TTTGTACATTGTCCTATACT+TGG + Chr3:100461174-100461193 MsG0380017767.01.T01:intron 30.0%
! ATTTTTGACCTTCCAAGTAT+AGG - Chr3:100461189-100461208 None:intergenic 30.0%
! CATTTTCTTCTATCATCACT+TGG + Chr3:100459285-100459304 MsG0380017767.01.T01:five_prime_UTR 30.0%
! TTTTCTTCTATCATCACTTG+GGG + Chr3:100459287-100459306 MsG0380017767.01.T01:five_prime_UTR 30.0%
!! TGGCTTGTTAACTATTATCA+GGG + Chr3:100460555-100460574 MsG0380017767.01.T01:intron 30.0%
!! TTGGCTTGTTAACTATTATC+AGG + Chr3:100460554-100460573 MsG0380017767.01.T01:intron 30.0%
!!! TGGGATTATTTTGAAATGCA+TGG - Chr3:100462898-100462917 None:intergenic 30.0%
AACAAGTTAGCTATACACCT+TGG - Chr3:100460588-100460607 None:intergenic 35.0%
AAGGAAAAGACTCCGTAATT+TGG + Chr3:100460814-100460833 MsG0380017767.01.T01:CDS 35.0%
AATTCCAAGCACCATAAATC+TGG - Chr3:100460299-100460318 None:intergenic 35.0%
AATTGAGAAATAGGAAGTGG+AGG + Chr3:100462453-100462472 MsG0380017767.01.T01:intron 35.0%
AGAATGAAAAGGTTGAGAAG+AGG - Chr3:100460381-100460400 None:intergenic 35.0%
AGACAATTTCCACGCTTTAT+AGG + Chr3:100460907-100460926 MsG0380017767.01.T01:CDS 35.0%
AGAGGAAATGTTGACCAATA+TGG + Chr3:100459646-100459665 MsG0380017767.01.T01:CDS 35.0%
AGATTTATGGTGCTTGGAAT+TGG + Chr3:100460298-100460317 MsG0380017767.01.T01:CDS 35.0%
AGGAAAAGACTCCGTAATTT+GGG + Chr3:100460815-100460834 MsG0380017767.01.T01:CDS 35.0%
AGGACTACTTGTCAAATTTG+AGG + Chr3:100460761-100460780 MsG0380017767.01.T01:CDS 35.0%
ATATTGGTCAACATTTCCTC+TGG - Chr3:100459647-100459666 None:intergenic 35.0%
ATGGGAGAAGTTAGAATACA+TGG + Chr3:100460185-100460204 MsG0380017767.01.T01:CDS 35.0%
ATTAGGACACAACTTTCTCA+TGG - Chr3:100459579-100459598 None:intergenic 35.0%
ATTGAAGTTGAAGAGGAAGT+TGG - Chr3:100462675-100462694 None:intergenic 35.0%
ATTTCCACGCTTTATAGGTA+CGG + Chr3:100460912-100460931 MsG0380017767.01.T01:CDS 35.0%
CAAATTTGAGGACACTAAGT+TGG + Chr3:100460773-100460792 MsG0380017767.01.T01:CDS 35.0%
CAATTGTCCTTATAGCTCTT+TGG + Chr3:100462229-100462248 MsG0380017767.01.T01:intron 35.0%
CATAAAAACGTTTGATTCCC+AGG + Chr3:100459328-100459347 MsG0380017767.01.T01:five_prime_UTR 35.0%
GAGGAAATGTTGACCAATAT+GGG + Chr3:100459647-100459666 MsG0380017767.01.T01:CDS 35.0%
GATGATTATAGATGTGTTGG+TGG + Chr3:100460861-100460880 MsG0380017767.01.T01:CDS 35.0%
GCGGTGAATTCATTATTTGA+AGG - Chr3:100459758-100459777 None:intergenic 35.0%
GGCAAAACAATCCAGATTTA+TGG + Chr3:100460285-100460304 MsG0380017767.01.T01:CDS 35.0%
GGTTGTTTATGGACAATTTG+AGG - Chr3:100462278-100462297 None:intergenic 35.0%
GTGAGAATGAAGACAGTTAA+AGG + Chr3:100460795-100460814 MsG0380017767.01.T01:CDS 35.0%
GTGCATTACAATTTCAGTGT+TGG - Chr3:100460712-100460731 None:intergenic 35.0%
TACATTGTCCTATACTTGGA+AGG + Chr3:100461178-100461197 MsG0380017767.01.T01:intron 35.0%
TATTTGACCGCTAATCCAAA+CGG + Chr3:100461645-100461664 MsG0380017767.01.T01:intron 35.0%
TGTACATTTCCTACAGATTG+AGG - Chr3:100461120-100461139 None:intergenic 35.0%
TGTATAGTGAATGCTTACGA+CGG - Chr3:100459864-100459883 None:intergenic 35.0%
TGTTAACTATTATCAGGGGT+TGG + Chr3:100460560-100460579 MsG0380017767.01.T01:intron 35.0%
TTAAGTCATAGTGGCAAAAG+TGG - Chr3:100461999-100462018 None:intergenic 35.0%
TTGTGTTGTGTCTATGAGTT+AGG + Chr3:100460461-100460480 MsG0380017767.01.T01:intron 35.0%
! ACAATCAAAGTGATTTTGGG+TGG + Chr3:100461922-100461941 MsG0380017767.01.T01:intron 35.0%
! ATGAGTTAGGATTTTGCTTG+AGG + Chr3:100460474-100460493 MsG0380017767.01.T01:intron 35.0%
! CAACCTTTTCATTCTAACAG+AGG + Chr3:100460386-100460405 MsG0380017767.01.T01:CDS 35.0%
! CATTACAATTTCAGTGTTGG+AGG - Chr3:100460709-100460728 None:intergenic 35.0%
! CTGGGAATCAAACGTTTTTA+TGG - Chr3:100459330-100459349 None:intergenic 35.0%
! TCTGGTTTCAAAATTACTGC+TGG + Chr3:100460326-100460345 MsG0380017767.01.T01:CDS 35.0%
! TGACTTGGATTCTATGATTC+TGG + Chr3:100462314-100462333 MsG0380017767.01.T01:CDS 35.0%
!! CAATCAAAGTGATTTTGGGT+GGG + Chr3:100461923-100461942 MsG0380017767.01.T01:intron 35.0%
!! CTAATTTTGACAAGGCAGAT+GGG + Chr3:100459594-100459613 MsG0380017767.01.T01:CDS 35.0%
!! GAATGGATTGAGGTTGTTTA+TGG - Chr3:100462289-100462308 None:intergenic 35.0%
!! GGCTTGTTAACTATTATCAG+GGG + Chr3:100460556-100460575 MsG0380017767.01.T01:intron 35.0%
!! GTTGTGTCCTAATTTTGACA+AGG + Chr3:100459586-100459605 MsG0380017767.01.T01:CDS 35.0%
AAAAGTGGTTAGGCCTAATG+GGG - Chr3:100461984-100462003 None:intergenic 40.0%
AAAGCTTCCAACCAAAACTG+AGG - Chr3:100462547-100462566 None:intergenic 40.0%
ACGACGGAACAATCTCTAAT+GGG - Chr3:100459848-100459867 None:intergenic 40.0%
AGTTCTCTCTCATGATCTGA+GGG - Chr3:100461035-100461054 None:intergenic 40.0%
ATCAGTATTTGTGACCTGTG+AGG - Chr3:100462101-100462120 None:intergenic 40.0%
ATCCCATCCCTTCCTTATAA+AGG + Chr3:100462912-100462931 MsG0380017767.01.T01:CDS 40.0%
ATCCTTATTCTCCCAAGACA+CGG - Chr3:100461286-100461305 None:intergenic 40.0%
ATGTGATCTTAGTTTACCGG+TGG - Chr3:100462700-100462719 None:intergenic 40.0%
ATGTTGCAAGCCAACTTCAT+TGG + Chr3:100461515-100461534 MsG0380017767.01.T01:intron 40.0%
ATTTGTGACCTGTGAGGTTT+AGG - Chr3:100462095-100462114 None:intergenic 40.0%
CAAAAGTGGTTAGGCCTAAT+GGG - Chr3:100461985-100462004 None:intergenic 40.0%
CAAGTTGCTGATAAGTCATC+TGG + Chr3:100459722-100459741 MsG0380017767.01.T01:CDS 40.0%
CAATCCAGATTTATGGTGCT+TGG + Chr3:100460292-100460311 MsG0380017767.01.T01:CDS 40.0%
CAATCCATTCTCTGATGACT+TGG + Chr3:100462299-100462318 MsG0380017767.01.T01:CDS 40.0%
CATGAAAGCTTTCTTTGCCA+AGG - Chr3:100461739-100461758 None:intergenic 40.0%
CATTAGGACGGAGTAAAAAC+TGG + Chr3:100461881-100461900 MsG0380017767.01.T01:intron 40.0%
CCATCTGCCTTGTCAAAATT+AGG - Chr3:100459596-100459615 None:intergenic 40.0%
CTTCATTGGACACGAAACAT+AGG + Chr3:100461529-100461548 MsG0380017767.01.T01:intron 40.0%
GAAAAGGTTGAGAAGAGGAT+TGG - Chr3:100460376-100460395 None:intergenic 40.0%
GAATCCAAGTCATCAGAGAA+TGG - Chr3:100462306-100462325 None:intergenic 40.0%
GCATACAGTGTCAATGAGTT+AGG + Chr3:100461070-100461089 MsG0380017767.01.T01:intron 40.0%
GCATTAACATAGCTCATGGT+GGG + Chr3:100460883-100460902 MsG0380017767.01.T01:CDS 40.0%
TACGACGGAACAATCTCTAA+TGG - Chr3:100459849-100459868 None:intergenic 40.0%
TAGTTCTCTCTCATGATCTG+AGG - Chr3:100461036-100461055 None:intergenic 40.0%
TATAAGGACAATTGCAGCCA+AGG - Chr3:100462223-100462242 None:intergenic 40.0%
TATCTAGAAAGAGAGAGGGA+GGG + Chr3:100459192-100459211 MsG0380017767.01.T01:five_prime_UTR 40.0%
TCATAGTGGCAAAAGTGGTT+AGG - Chr3:100461994-100462013 None:intergenic 40.0%
TCTGGATGATCTAGATGTGT+TGG + Chr3:100462332-100462351 MsG0380017767.01.T01:CDS 40.0%
TCTTCAACTTCAATCACCAC+CGG + Chr3:100462681-100462700 MsG0380017767.01.T01:CDS 40.0%
TGAACCTGAAGAGGAATAAG+AGG - Chr3:100459803-100459822 None:intergenic 40.0%
TGAATGGACGCTGTTATCAT+CGG - Chr3:100460231-100460250 None:intergenic 40.0%
TGATCAGATTGAACCTGAAG+AGG - Chr3:100459812-100459831 None:intergenic 40.0%
TGCTCTCTATGTACTTTGGA+AGG - Chr3:100462154-100462173 None:intergenic 40.0%
TGTTTCGTGTCCAATGAAGT+TGG - Chr3:100461528-100461547 None:intergenic 40.0%
TTGGGCAGAGAGATTCAATT+GGG + Chr3:100460087-100460106 MsG0380017767.01.T01:intron 40.0%
TTTGGGCAGAGAGATTCAAT+TGG + Chr3:100460086-100460105 MsG0380017767.01.T01:intron 40.0%
! AACTTTCTCATGGCTTGTCT+TGG - Chr3:100459569-100459588 None:intergenic 40.0%
! CTCTCTATGTACTTTGGAAG+GGG - Chr3:100462152-100462171 None:intergenic 40.0%
! GCTCTCTATGTACTTTGGAA+GGG - Chr3:100462153-100462172 None:intergenic 40.0%
! GCTCTTTGGTTTATGTTCAC+AGG + Chr3:100462243-100462262 MsG0380017767.01.T01:intron 40.0%
! GGATGATATGTTTGTTGCCT+GGG - Chr3:100459348-100459367 None:intergenic 40.0%
! GTAGTAATGGCAAAGTATCC+TGG + Chr3:100460348-100460367 MsG0380017767.01.T01:CDS 40.0%
! TTGTTTTCTCGCAAGTGTGA+GGG - Chr3:100461779-100461798 None:intergenic 40.0%
!! AGTCATCAGAGAATGGATTG+AGG - Chr3:100462299-100462318 None:intergenic 40.0%
!! CCTAATTTTGACAAGGCAGA+TGG + Chr3:100459593-100459612 MsG0380017767.01.T01:CDS 40.0%
!! GTCAACATTTCCTCTGGAAT+AGG - Chr3:100459641-100459660 None:intergenic 40.0%
AAAACCATGACTCCGTGTCT+TGG + Chr3:100461271-100461290 MsG0380017767.01.T01:intron 45.0%
AAACCATGACTCCGTGTCTT+GGG + Chr3:100461272-100461291 MsG0380017767.01.T01:intron 45.0%
AAGTAGGAGGTTTCGTGCTA+TGG + Chr3:100460264-100460283 MsG0380017767.01.T01:CDS 45.0%
ACATAGCATCTCAAGTGGGT+AGG - Chr3:100461956-100461975 None:intergenic 45.0%
ACCCACAAGCTTAAGCAATG+CGG - Chr3:100459777-100459796 None:intergenic 45.0%
ACCGCATTGCTTAAGCTTGT+GGG + Chr3:100459773-100459792 MsG0380017767.01.T01:CDS 45.0%
AGAAATAGGAAGTGGAGGAG+AGG + Chr3:100462458-100462477 MsG0380017767.01.T01:intron 45.0%
ATGGTTCAGAGATGCGTCAT+GGG + Chr3:100460204-100460223 MsG0380017767.01.T01:CDS 45.0%
ATTATCAGGGGTTGGATCCA+AGG + Chr3:100460568-100460587 MsG0380017767.01.T01:intron 45.0%
ATTCAATGCACCTTGTCCAC+CGG - Chr3:100460144-100460163 None:intergenic 45.0%
CAACAATATGTGGCAGCAAC+CGG + Chr3:100460122-100460141 MsG0380017767.01.T01:CDS 45.0%
CAGATTGAGGAGTTGAGAGA+AGG - Chr3:100461107-100461126 None:intergenic 45.0%
CCAAAACTGAGGCAATCCAA+TGG - Chr3:100462536-100462555 None:intergenic 45.0%
CTCTCAACTCCTCAATCTGT+AGG + Chr3:100461108-100461127 MsG0380017767.01.T01:intron 45.0%
CTTCAGCTTTGCCTCTTGAA+TGG - Chr3:100460247-100460266 None:intergenic 45.0%
GAAATAGGAAGTGGAGGAGA+GGG + Chr3:100462459-100462478 MsG0380017767.01.T01:intron 45.0%
GATAACAGCGTCCATTCAAG+AGG + Chr3:100460233-100460252 MsG0380017767.01.T01:CDS 45.0%
GCAAAAGTGGTTAGGCCTAA+TGG - Chr3:100461986-100462005 None:intergenic 45.0%
GCACTACAAGTTATGTGCCT+TGG + Chr3:100462203-100462222 MsG0380017767.01.T01:intron 45.0%
GGCATTAACATAGCTCATGG+TGG + Chr3:100460882-100460901 MsG0380017767.01.T01:CDS 45.0%
GGGCCTCTGTTAGAATGAAA+AGG - Chr3:100460392-100460411 None:intergenic 45.0%
GGTCAAAATAAGGGTCCGTT+TGG - Chr3:100461663-100461682 None:intergenic 45.0%
GGTGGCATTAACATAGCTCA+TGG + Chr3:100460879-100460898 MsG0380017767.01.T01:CDS 45.0%
GGTGGTGATTGAAGTTGAAG+AGG - Chr3:100462682-100462701 None:intergenic 45.0%
GTATCTAGAAAGAGAGAGGG+AGG + Chr3:100459191-100459210 MsG0380017767.01.T01:five_prime_UTR 45.0%
GTGTCTTGGGAGAATAAGGA+TGG + Chr3:100461285-100461304 MsG0380017767.01.T01:intron 45.0%
TACCTGAAAGAAGCGACGAA+GGG - Chr3:100460423-100460442 None:intergenic 45.0%
TCAAGAGGCAAAGCTGAAGT+AGG + Chr3:100460248-100460267 MsG0380017767.01.T01:CDS 45.0%
TCCTAGATGCTGAATGCGTA+GGG + Chr3:100460607-100460626 MsG0380017767.01.T01:CDS 45.0%
TGAAGCTGCTTATGAGCACT+TGG + Chr3:100462567-100462586 MsG0380017767.01.T01:CDS 45.0%
TGCTCCTCTTATTCCTCTTC+AGG + Chr3:100459796-100459815 MsG0380017767.01.T01:CDS 45.0%
TGGCACATAGCATCTCAAGT+GGG - Chr3:100461960-100461979 None:intergenic 45.0%
TTACCTGAAAGAAGCGACGA+AGG - Chr3:100460424-100460443 None:intergenic 45.0%
TTCCTAGATGCTGAATGCGT+AGG + Chr3:100460606-100460625 MsG0380017767.01.T01:CDS 45.0%
TTGGCACATAGCATCTCAAG+TGG - Chr3:100461961-100461980 None:intergenic 45.0%
! CCATTGGATTGCCTCAGTTT+TGG + Chr3:100462533-100462552 MsG0380017767.01.T01:CDS 45.0%
! GGGATGATATGTTTGTTGCC+TGG - Chr3:100459349-100459368 None:intergenic 45.0%
! GGGGTATCTAGAAAGAGAGA+GGG + Chr3:100459188-100459207 MsG0380017767.01.T01:five_prime_UTR 45.0%
! TAAGGGTCCGTTTGGATTAG+CGG - Chr3:100461655-100461674 None:intergenic 45.0%
! TGCTTGGAATTGGTAGTCTC+TGG + Chr3:100460308-100460327 MsG0380017767.01.T01:CDS 45.0%
! TGTTTTCTCGCAAGTGTGAG+GGG - Chr3:100461778-100461797 None:intergenic 45.0%
! TTTGTGAGGAAGCACGCATT+AGG + Chr3:100461865-100461884 MsG0380017767.01.T01:intron 45.0%
! TTTTGACAAGGCAGATGGGT+TGG + Chr3:100459598-100459617 MsG0380017767.01.T01:CDS 45.0%
!! AGGGGTATCTAGAAAGAGAG+AGG + Chr3:100459187-100459206 MsG0380017767.01.T01:five_prime_UTR 45.0%
!! CTTGGCGATTTCTGAAACAG+CGG - Chr3:100462620-100462639 None:intergenic 45.0%
!! GTTGTTTTCTCGCAAGTGTG+AGG - Chr3:100461780-100461799 None:intergenic 45.0%
!! TGGATTGCCTCAGTTTTGGT+TGG + Chr3:100462537-100462556 MsG0380017767.01.T01:CDS 45.0%
!! TGTTGGAGGTACTTTGTGCT+TGG - Chr3:100460695-100460714 None:intergenic 45.0%
!! TTGAGAAGAGGATTGGTTCC+AGG - Chr3:100460369-100460388 None:intergenic 45.0%
AATATGCATGCACGTGCTGC+TGG + Chr3:100462174-100462193 MsG0380017767.01.T01:intron 50.0%
ACCTGAAAGAAGCGACGAAG+GGG - Chr3:100460422-100460441 None:intergenic 50.0%
AGAGGCAAAGCTGAAGTAGG+AGG + Chr3:100460251-100460270 MsG0380017767.01.T01:CDS 50.0%
AGATACCCCTTTGCCTCAAC+TGG - Chr3:100459177-100459196 None:intergenic 50.0%
AGCTAAGGGTCAGAGCGAAT+TGG + Chr3:100462859-100462878 MsG0380017767.01.T01:CDS 50.0%
CACCGCATTGCTTAAGCTTG+TGG + Chr3:100459772-100459791 MsG0380017767.01.T01:CDS 50.0%
CATGGTTCAGAGATGCGTCA+TGG + Chr3:100460203-100460222 MsG0380017767.01.T01:CDS 50.0%
CCTAGATGCTGAATGCGTAG+GGG + Chr3:100460608-100460627 MsG0380017767.01.T01:CDS 50.0%
CGCAGTCATAGCAACTCCAT+TGG + Chr3:100462517-100462536 MsG0380017767.01.T01:CDS 50.0%
CTCCGTGTCTTGGGAGAATA+AGG + Chr3:100461281-100461300 MsG0380017767.01.T01:intron 50.0%
CTGCCAACGATTGAAACCAG+TGG - Chr3:100459675-100459694 None:intergenic 50.0%
GAAACCAGTGGTGCCCATAT+TGG - Chr3:100459663-100459682 None:intergenic 50.0%
GGGATACACCTAAACCTCAC+AGG + Chr3:100462084-100462103 MsG0380017767.01.T01:intron 50.0%
TATCATCCCCAAGCCAGTTG+AGG + Chr3:100459161-100459180 MsG0380017767.01.T01:five_prime_UTR 50.0%
TATCATCCCCAAGTCCGTTG+AGG + Chr3:100459360-100459379 MsG0380017767.01.T01:five_prime_UTR 50.0%
TCTCATGATCTGAGGGAGGA+AGG - Chr3:100461028-100461047 None:intergenic 50.0%
TCTCTCTCATGATCTGAGGG+AGG - Chr3:100461032-100461051 None:intergenic 50.0%
TCTGGAGGTTCCTATTCCAG+AGG + Chr3:100459628-100459647 MsG0380017767.01.T01:CDS 50.0%
TGACAAGTAGTCCTGTGCGT+TGG - Chr3:100460755-100460774 None:intergenic 50.0%
TGCTATGTGCCAACCCCATT+AGG + Chr3:100461968-100461987 MsG0380017767.01.T01:intron 50.0%
TGCTCTGCACATGTCAACCA+TGG - Chr3:100462814-100462833 None:intergenic 50.0%
TGGTTCAGAGATGCGTCATG+GGG + Chr3:100460205-100460224 MsG0380017767.01.T01:CDS 50.0%
TTGACCAATATGGGCACCAC+TGG + Chr3:100459656-100459675 MsG0380017767.01.T01:CDS 50.0%
! ACTTTGGAAGGGGCTTTCAC+AGG - Chr3:100462142-100462161 None:intergenic 50.0%
! CGTCGCTTCTTTCAGGTAAC+AGG + Chr3:100460425-100460444 MsG0380017767.01.T01:intron 50.0%
! GTTTTCTCGCAAGTGTGAGG+GGG - Chr3:100461777-100461796 None:intergenic 50.0%
! TGAGGAAGCACGCATTAGGA+CGG + Chr3:100461869-100461888 MsG0380017767.01.T01:intron 50.0%
!! AGATGGGTTGGATACGGTTC+TGG + Chr3:100459610-100459629 MsG0380017767.01.T01:CDS 50.0%
!! CAAGGCAGATGGGTTGGATA+CGG + Chr3:100459604-100459623 MsG0380017767.01.T01:CDS 50.0%
!! GCACCACTGGTTTCAATCGT+TGG + Chr3:100459669-100459688 MsG0380017767.01.T01:CDS 50.0%
!! TGGAGGTACTTTGTGCTTGG+AGG - Chr3:100460692-100460711 None:intergenic 50.0%
AAGAAGCGACGAAGGGGTCT+AGG - Chr3:100460416-100460435 None:intergenic 55.0%
ACCCCTTCGTCGCTTCTTTC+AGG + Chr3:100460418-100460437 MsG0380017767.01.T01:CDS 55.0%
AGAAGGTGGTGAGGCACATG+TGG + Chr3:100462482-100462501 MsG0380017767.01.T01:CDS 55.0%
CAATATGTGGCAGCAACCGG+TGG + Chr3:100460125-100460144 MsG0380017767.01.T01:CDS 55.0%
CACGCTTTATAGGTACGGCG+CGG + Chr3:100460917-100460936 MsG0380017767.01.T01:CDS 55.0%
CCAAGCCAGTTGAGGCAAAG+GGG + Chr3:100459169-100459188 MsG0380017767.01.T01:five_prime_UTR 55.0%
CCCAAGCCAGTTGAGGCAAA+GGG + Chr3:100459168-100459187 MsG0380017767.01.T01:five_prime_UTR 55.0%
CCCCTACGCATTCAGCATCT+AGG - Chr3:100460611-100460630 None:intergenic 55.0%
CTAGAAAGAGAGAGGGAGGG+AGG + Chr3:100459195-100459214 MsG0380017767.01.T01:five_prime_UTR 55.0%
GAAGGTGGTGAGGCACATGT+GGG + Chr3:100462483-100462502 MsG0380017767.01.T01:CDS 55.0%
GCGCAGTGCTAGTGACATCT+TGG - Chr3:100462638-100462657 None:intergenic 55.0%
GGGATACGCAGAAAGAGACG+AGG + Chr3:100459388-100459407 MsG0380017767.01.T01:five_prime_UTR 55.0%
GTGGTTAGGCCTAATGGGGT+TGG - Chr3:100461980-100461999 None:intergenic 55.0%
GTTGACATGTGCAGAGCAGC+AGG + Chr3:100462816-100462835 MsG0380017767.01.T01:intron 55.0%
TCTCCCAAGACACGGAGTCA+TGG - Chr3:100461278-100461297 None:intergenic 55.0%
! CCCTTTGCCTCAACTGGCTT+GGG - Chr3:100459171-100459190 None:intergenic 55.0%
! GGCTACTTTAGCCAACGCAC+AGG + Chr3:100460741-100460760 MsG0380017767.01.T01:CDS 55.0%
! TGGGTTGGATACGGTTCTGG+AGG + Chr3:100459613-100459632 MsG0380017767.01.T01:CDS 55.0%
!! CCTTTGCCTCAACTGGCTTG+GGG - Chr3:100459170-100459189 None:intergenic 55.0%
AAGCGACGAAGGGGTCTAGG+AGG - Chr3:100460413-100460432 None:intergenic 60.0%
AGCGACGAAGGGGTCTAGGA+GGG - Chr3:100460412-100460431 None:intergenic 60.0%
AGGAGAGGGAGAAGGTGGTG+AGG + Chr3:100462473-100462492 MsG0380017767.01.T01:CDS 60.0%
AGTGGAGGAGAGGGAGAAGG+TGG + Chr3:100462468-100462487 MsG0380017767.01.T01:CDS 60.0%
CCAAGTCCGTTGAGGCAAGG+GGG + Chr3:100459368-100459387 MsG0380017767.01.T01:five_prime_UTR 60.0%
CCCAAGTCCGTTGAGGCAAG+GGG + Chr3:100459367-100459386 MsG0380017767.01.T01:five_prime_UTR 60.0%
CCCCAAGCCAGTTGAGGCAA+AGG + Chr3:100459167-100459186 MsG0380017767.01.T01:five_prime_UTR 60.0%
CCCCAAGTCCGTTGAGGCAA+GGG + Chr3:100459366-100459385 MsG0380017767.01.T01:five_prime_UTR 60.0%
CCCCTTTGCCTCAACTGGCT+TGG - Chr3:100459172-100459191 None:intergenic 60.0%
CGCGCCGTACCTATAAAGCG+TGG - Chr3:100460919-100460938 None:intergenic 60.0%
GCGTATCCCCCTTGCCTCAA+CGG - Chr3:100459377-100459396 None:intergenic 60.0%
GGAAGTGGAGGAGAGGGAGA+AGG + Chr3:100462465-100462484 MsG0380017767.01.T01:intron 60.0%
TCCCCAAGTCCGTTGAGGCA+AGG + Chr3:100459365-100459384 MsG0380017767.01.T01:five_prime_UTR 60.0%
! ATGCACGTGCTGCTGGCAAG+AGG + Chr3:100462181-100462200 MsG0380017767.01.T01:intron 60.0%
! CCCCTTGCCTCAACGGACTT+GGG - Chr3:100459370-100459389 None:intergenic 60.0%
! CCCTTGCCTCAACGGACTTG+GGG - Chr3:100459369-100459388 None:intergenic 60.0%
ACAGCGGCGTCTCGAACTGC+TGG - Chr3:100462604-100462623 None:intergenic 65.0%
GTGGCAGCAACCGGTGGACA+AGG + Chr3:100460131-100460150 MsG0380017767.01.T01:CDS 65.0%
! CCCCCTTGCCTCAACGGACT+TGG - Chr3:100459371-100459390 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
Chr3 gene 100459106 100462931 100459106 ID=MsG0380017767.01;Name=MsG0380017767.01
Chr3 mRNA 100459106 100462931 100459106 ID=MsG0380017767.01.T01;Parent=MsG0380017767.01;Name=MsG0380017767.01.T01;_AED=0.26;_eAED=0.28;_QI=451|0.4|0.33|1|1|1|6|0|530
Chr3 exon 100459106 100459865 100459106 ID=MsG0380017767.01.T01:exon:13003;Parent=MsG0380017767.01.T01
Chr3 exon 100460095 100460439 100460095 ID=MsG0380017767.01.T01:exon:13004;Parent=MsG0380017767.01.T01
Chr3 exon 100460576 100461086 100460576 ID=MsG0380017767.01.T01:exon:13005;Parent=MsG0380017767.01.T01
Chr3 exon 100462265 100462353 100462265 ID=MsG0380017767.01.T01:exon:13006;Parent=MsG0380017767.01.T01
Chr3 exon 100462466 100462702 100462466 ID=MsG0380017767.01.T01:exon:13007;Parent=MsG0380017767.01.T01
Chr3 exon 100462830 100462931 100462830 ID=MsG0380017767.01.T01:exon:13008;Parent=MsG0380017767.01.T01
Chr3 five_prime_UTR 100459106 100459556 100459106 ID=MsG0380017767.01.T01:five_prime_utr;Parent=MsG0380017767.01.T01
Chr3 CDS 100459557 100459865 100459557 ID=MsG0380017767.01.T01:cds;Parent=MsG0380017767.01.T01
Chr3 CDS 100460095 100460439 100460095 ID=MsG0380017767.01.T01:cds;Parent=MsG0380017767.01.T01
Chr3 CDS 100460576 100461086 100460576 ID=MsG0380017767.01.T01:cds;Parent=MsG0380017767.01.T01
Chr3 CDS 100462265 100462353 100462265 ID=MsG0380017767.01.T01:cds;Parent=MsG0380017767.01.T01
Chr3 CDS 100462466 100462702 100462466 ID=MsG0380017767.01.T01:cds;Parent=MsG0380017767.01.T01
Chr3 CDS 100462830 100462931 100462830 ID=MsG0380017767.01.T01:cds;Parent=MsG0380017767.01.T01
Gene Sequence

>MsG0380017767.01.T01

ATGTTACTTCCAAGACAAGCCATGAGAAAGTTGTGTCCTAATTTTGACAAGGCAGATGGGTTGGATACGGTTCTGGAGGTTCCTATTCCAGAGGAAATGTTGACCAATATGGGCACCACTGGTTTCAATCGTTGGCAGAATTTGAAAACTCTAATGAATAATGCTCAAGTTGCTGATAAGTCATCTGGTCTATCTGCACCTTCAAATAATGAATTCACCGCATTGCTTAAGCTTGTGGGTGCTCCTCTTATTCCTCTTCAGGTTCAATCTGATCATACTTTGACTCGGCCCATTAGAGATTGTTCCGTCAGAGATTCAATTGGGAAATACATAGTACAACAATATGTGGCAGCAACCGGTGGACAAGGTGCATTGAATTCATTGCAAAACATGTATGCAATGGGAGAAGTTAGAATACATGGTTCAGAGATGCGTCATGGGGCCGATGATAACAGCGTCCATTCAAGAGGCAAAGCTGAAGTAGGAGGTTTCGTGCTATGGCAAAACAATCCAGATTTATGGTGCTTGGAATTGGTAGTCTCTGGTTTCAAAATTACTGCTGGTAGTAATGGCAAAGTATCCTGGAACCAATCCTCTTCTCAACCTTTTCATTCTAACAGAGGCCCTCCTAGACCCCTTCGTCGCTTCTTTCAGGGGTTGGATCCAAGGTGTATAGCTAACTTGTTCCTAGATGCTGAATGCGTAGGGGAGAACGAAATTAACAATGATTTGTGTTTCATACTAAAATTACAAACAGAACAACACATCCTCCAAGCACAAAGTACCTCCAACACTGAAATTGTAATGCACACAATATTGGGCTACTTTAGCCAACGCACAGGACTACTTGTCAAATTTGAGGACACTAAGTTGGTGAGAATGAAGACAGTTAAAGGAAAAGACTCCGTAATTTGGGAAACAAACATTGAGTCTACTATTGATGATTATAGATGTGTTGGTGGCATTAACATAGCTCATGGTGGGAAGACAATTTCCACGCTTTATAGGTACGGCGCGGCACATAATCACAAACAAATGATTGAGGAAATATGGAGTATTGAAGAAGTTGATTTTAACATTTTTGGATTGTCTATGGATTGTTTCCTTCCTCCCTCAGATCATGAGAGAGAACTACATGATGTTGCAGAGCATACAGTGTCAATGAGCTCTATCACCCTCAAATTGTCCATAAACAACCTCAATCCATTCTCTGATGACTTGGATTCTATGATTCTGGATGATCTAGATGTGTTGGAAGTGGAGGAGAGGGAGAAGGTGGTGAGGCACATGTGGGATGTGTACACTCGCAGTCATAGCAACTCCATTGGATTGCCTCAGTTTTGGTTGGAAGCTTTTGAAGCTGCTTATGAGCACTTGGTCAGTGATGTTCCAGCAGTTCGAGACGCCGCTGTTTCAGAAATCGCCAAGATGTCACTAGCACTGCGCTCACACATTTTACACCAACTTCCTCTTCAACTTCAATCACCACCGAGCAGCAGGAGATCAAGAAAACTTAAGCAAGCTAAGGGTCAGAGCGAATTGGATCATTATGAAGACCATGCATTTCAAAATAATCCCATCCCTTCCTTATAA
Protein sequence

>MsG0380017767.01.T01

MLLPRQAMRKLCPNFDKADGLDTVLEVPIPEEMLTNMGTTGFNRWQNLKTLMNNAQVADKSSGLSAPSNNEFTALLKLVGAPLIPLQVQSDHTLTRPIRDCSVRDSIGKYIVQQYVAATGGQGALNSLQNMYAMGEVRIHGSEMRHGADDNSVHSRGKAEVGGFVLWQNNPDLWCLELVVSGFKITAGSNGKVSWNQSSSQPFHSNRGPPRPLRRFFQGLDPRCIANLFLDAECVGENEINNDLCFILKLQTEQHILQAQSTSNTEIVMHTILGYFSQRTGLLVKFEDTKLVRMKTVKGKDSVIWETNIESTIDDYRCVGGINIAHGGKTISTLYRYGAAHNHKQMIEEIWSIEEVDFNIFGLSMDCFLPPSDHERELHDVAEHTVSMSSITLKLSINNLNPFSDDLDSMILDDLDVLEVEEREKVVRHMWDVYTRSHSNSIGLPQFWLEAFEAAYEHLVSDVPAVRDAAVSEIAKMSLALRSHILHQLPLQLQSPPSSRRSRKLKQAKGQSELDHYEDHAFQNNPIPSL*