AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480023483.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480023483.01.T01 MTR_8g094030 98.933 375 4 0 202 576 353 727 0.0 758
MsG0480023483.01.T01 MTR_3g093120 53.886 193 88 1 11 203 303 494 3.30e-69 233
MsG0480023483.01.T01 MTR_7g026095 51.389 144 70 0 22 165 27 170 2.38e-47 169
MsG0480023483.01.T01 MTR_3g452820 43.147 197 72 3 5 201 5 161 2.70e-46 161
MsG0480023483.01.T01 MTR_6g472230 41.624 197 111 2 30 222 2 198 4.53e-45 172
MsG0480023483.01.T01 MTR_2g075320 42.708 192 79 2 10 201 90 250 7.88e-41 150
MsG0480023483.01.T01 MTR_7g021330 61.798 89 31 2 25 110 22 110 1.42e-28 110
MsG0480023483.01.T01 MTR_8g011410 37.580 157 76 2 50 205 815 950 6.07e-24 107
MsG0480023483.01.T01 MTR_6g060522 47.059 119 52 3 121 236 2 112 7.73e-24 99.8
MsG0480023483.01.T01 MTR_6g033925 42.105 114 63 1 21 134 25 135 1.15e-23 100
MsG0480023483.01.T01 MTR_6g060910 44.828 87 48 0 58 144 38 124 4.03e-23 95.1
MsG0480023483.01.T01 MTR_7g056567 52.632 95 42 2 119 213 16 107 4.33e-22 93.6
MsG0480023483.01.T01 MTR_8g059225 40.594 101 59 1 98 198 73 172 1.35e-21 92.8
MsG0480023483.01.T01 MTR_3g448730 41.667 108 58 3 115 219 102 207 6.15e-21 92.4
MsG0480023483.01.T01 MTR_3g022740 32.778 180 71 4 26 205 9 138 2.61e-17 86.3
MsG0480023483.01.T01 MTR_2g460640 43.210 81 46 0 21 101 22 102 3.93e-17 79.3
MsG0480023483.01.T01 MTR_4g070440 42.574 101 15 1 20 120 42 99 1.51e-16 75.9
MsG0480023483.01.T01 MTR_1g051400 37.778 90 56 0 64 153 73 162 4.17e-16 77.0
MsG0480023483.01.T01 MTR_1g074130 40.909 110 23 1 57 166 1 68 6.87e-16 73.9
MsG0480023483.01.T01 MTR_4g009290 45.977 87 30 2 53 138 71 141 4.00e-15 75.9
MsG0480023483.01.T01 MTR_1g058200 43.373 83 47 0 56 138 56 138 4.36e-15 73.6
MsG0480023483.01.T01 MTR_6g077680 34.586 133 66 4 12 143 528 640 7.47e-15 78.2
MsG0480023483.01.T01 MTR_7g056703 31.690 142 66 2 24 165 1 111 5.48e-13 69.7
MsG0480023483.01.T01 MTR_2g017850 28.358 134 81 3 42 175 188 306 1.21e-12 69.7
MsG0480023483.01.T01 MTR_0233s0060 42.254 71 41 0 84 154 6 76 1.35e-12 69.3
MsG0480023483.01.T01 MTR_1g021460 41.379 87 50 1 24 110 41 126 1.53e-12 65.9
MsG0480023483.01.T01 MTR_0046s0060 28.205 156 80 4 31 186 9 132 2.03e-12 67.0
MsG0480023483.01.T01 MTR_0303s0010 43.548 62 35 0 85 146 103 164 2.30e-12 65.9
MsG0480023483.01.T01 MTR_8g026880 45.556 90 21 2 127 213 2 66 2.75e-12 63.5
MsG0480023483.01.T01 MTR_1g104513 59.184 49 20 0 159 207 95 143 6.07e-12 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480023483.01.T01 AT2G13440 85.311 354 50 1 202 553 349 702 0.0 619
MsG0480023483.01.T01 AT4G23160 48.837 215 109 1 5 218 362 576 5.43e-60 216
MsG0480023483.01.T01 AT4G23160 48.837 215 109 1 5 218 362 576 5.43e-60 216

Find 144 sgRNAs with CRISPR-Local

Find 312 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCCTCCAGGGCATTATTTC+TGG 0.116393 4:+85817148 MsG0480023482.01.T01:intron
TTGAAAAGTGTCAAAATTTC+AGG 0.172651 4:+85817554 MsG0480023482.01.T01:CDS
TTCTTCTCGGGTCAGATAAA+TGG 0.202098 4:+85816924 MsG0480023482.01.T01:CDS
ACTCCTTTGGGTCGTGAAAT+TGG 0.211572 4:+85817461 MsG0480023482.01.T01:CDS
TCCTTGAGCTTTCCTCCTTT+TGG 0.212482 4:-85819387 None:intergenic
TGTCAAACTTCTACCTAATC+AGG 0.301873 4:+85814949 MsG0480023482.01.T01:intron
TCTTACTCTTCCATGATATC+AGG 0.307025 4:-85815276 None:intergenic
TATCTCATTAGGAGGGGATT+TGG 0.309038 4:+85818404 MsG0480023482.01.T01:intron
TTAACGCATTCATGTGTTCT+TGG 0.328980 4:-85815096 None:intergenic
TGATAGCCGTCTCACTCCTT+TGG 0.343963 4:+85817448 MsG0480023482.01.T01:CDS
GCATAGTAATCCAGGTCTTC+AGG 0.348133 4:-85818807 None:intergenic
CTTCTTGATAAGCATGGTTT+TGG 0.360839 4:+85818516 MsG0480023482.01.T01:CDS
AAGAAACCGCACATACAATA+TGG 0.372023 4:+85818492 MsG0480023482.01.T01:CDS
ACCAATCTCCTATATCTTCC+TGG 0.374557 4:-85814989 None:intergenic
TGACAAGAATTTATCAAGAA+TGG 0.376896 4:+85818539 MsG0480023482.01.T01:CDS
ATTGATAGACGATCCACTTC+TGG 0.377561 4:+85815229 MsG0480023482.01.T01:intron
GGTCTCATTTATGAGGATAA+AGG 0.379060 4:+85815157 MsG0480023482.01.T01:intron
CCTTTGCTGAGAACTTTGCC+TGG 0.379636 4:+85816795 MsG0480023482.01.T01:CDS
CAAGCGCTGAGGCAGAATAT+AGG 0.381145 4:+85815320 MsG0480023482.01.T01:intron
GGCAAGGAGAATTTAAGAAT+TGG 0.390420 4:-85815075 None:intergenic
GATAGCCGTCTCACTCCTTT+GGG 0.391537 4:+85817449 MsG0480023482.01.T01:CDS
ATCTTATAGGGGTTCTCAAC+CGG 0.395502 4:+85816750 MsG0480023482.01.T01:intron
TATCTTCCTGGATCAGATAA+AGG 0.395589 4:-85814977 None:intergenic
AAAAGCTACAAAATCATAGA+TGG 0.399707 4:+85819555 MsG0480023482.01.T01:exon
AAACTTCAGGCTCCTCATCT+TGG 0.401204 4:-85819451 None:intergenic
TCTGGGTATTGTGTACTTGT+TGG 0.401860 4:+85815247 MsG0480023482.01.T01:intron
TAGTAACATGTGAACTCATT+TGG 0.408532 4:+85815353 MsG0480023482.01.T01:intron
GTCAGAGAGAAGATTGAATC+TGG 0.409203 4:+85815517 MsG0480023482.01.T01:intron
AAGCGCTGAGGCAGAATATA+GGG 0.416894 4:+85815321 MsG0480023482.01.T01:intron
GTTTCAGTCAAAGAAACTTC+AGG 0.419087 4:-85819464 None:intergenic
TTAAAGAAATGTGTAATTTG+AGG 0.419089 4:+85819655 MsG0480023482.01.T01:exon
TCATCAAATATTTCTTGAAC+CGG 0.420952 4:+85816068 MsG0480023482.01.T01:CDS
TTATCACATATAAGCGTCAT+TGG 0.425918 4:-85815418 None:intergenic
ATCTTGGGTATTAGCTTGAA+TGG 0.427478 4:-85819435 None:intergenic
AATGAGTAGTGCAGTGATAT+CGG 0.429661 4:-85819354 None:intergenic
TTGACTGAAACAGCTAGATC+TGG 0.429758 4:+85819476 MsG0480023482.01.T01:exon
AGGACCTGCGAGAGCCTTAC+CGG 0.431505 4:+85817266 MsG0480023482.01.T01:CDS
TTGGTTGAAGCAGCTACTTA+AGG 0.435738 4:+85815372 MsG0480023482.01.T01:intron
TAAATACATCAAAGGTGCTC+CGG 0.438481 4:+85815129 MsG0480023482.01.T01:intron
GTATGTGCGGTTTCTTAAGA+AGG 0.439711 4:-85818485 None:intergenic
GCACAGATAAATATCAAAAT+CGG 0.441890 4:-85819521 None:intergenic
TCAGCAAAGCCAACTTCAAC+AGG 0.445803 4:+85818611 MsG0480023482.01.T01:CDS
GCAATCTATCTCGATATGTT+TGG 0.446752 4:-85815488 None:intergenic
GTAAGGCTCTCGCAGGTCCT+TGG 0.446878 4:-85817263 None:intergenic
GACCTAGAGCATTGATGAGC+AGG 0.447046 4:-85816873 None:intergenic
CTCGCCTGACCAATGGTTTG+AGG 0.449157 4:-85819308 None:intergenic
AACTTCAGGCTCCTCATCTT+GGG 0.449927 4:-85819450 None:intergenic
TGCATGGAACACTGGATTTG+AGG 0.450341 4:-85815461 None:intergenic
ATCAAAGGTGCTCCGGGAAA+AGG 0.450362 4:+85815136 MsG0480023482.01.T01:intron
ATACAAGGATTGTTCTTCTC+GGG 0.451776 4:+85816912 MsG0480023482.01.T01:CDS
TTGATAGACGATCCACTTCT+GGG 0.453664 4:+85815230 MsG0480023482.01.T01:intron
AATACAAGGATTGTTCTTCT+CGG 0.458517 4:+85816911 MsG0480023482.01.T01:CDS
TTTGATGAGACTCTTTGTCT+TGG 0.460619 4:-85816053 None:intergenic
TATCTGATCCAGGAAGATAT+AGG 0.469805 4:+85814981 MsG0480023482.01.T01:intron
CTGTAGTCTCTCAGGCAAAC+CGG 0.472181 4:-85816769 None:intergenic
AAAGGCAACTGTAGTCTCTC+AGG 0.474416 4:-85816777 None:intergenic
TACTCAGATGCTGACTGGGC+AGG 0.475357 4:+85815199 MsG0480023482.01.T01:intron
AGAAGTGGATCGTCTATCAA+TGG 0.478192 4:-85815227 None:intergenic
CTATGAAGAAGCTGCAGCAC+AGG 0.479361 4:+85816956 MsG0480023482.01.T01:CDS
ATAGATTGACAGAGAGGAAA+AGG 0.480473 4:+85819578 MsG0480023482.01.T01:exon
TTGGTTACTCAGATGCTGAC+TGG 0.482264 4:+85815194 MsG0480023482.01.T01:intron
CGATATGTTTGGTCCTTGCA+TGG 0.482470 4:-85815477 None:intergenic
GAGAGAGAGAGCAGTTACAT+AGG 0.486318 4:+85817217 MsG0480023482.01.T01:CDS
AAATTGGATTGATAGATGAT+AGG 0.488648 4:+85817477 MsG0480023482.01.T01:CDS
TAATCCAGGTCTTCAGGAAG+TGG 0.489976 4:-85818801 None:intergenic
TTGGAGGAAACCTGATATCA+TGG 0.491378 4:+85815266 MsG0480023482.01.T01:intron
TAGGTTAGGCCTCAAACCAT+TGG 0.494962 4:+85819299 MsG0480023482.01.T01:intron
GCTGAAATTACTGTTATGTC+TGG 0.496108 4:+85818429 MsG0480023482.01.T01:CDS
GGGTATTGTGTACTTGTTGG+AGG 0.497554 4:+85815250 MsG0480023482.01.T01:intron
AAATCCGAGCCTGCTTCTCC+TGG 0.498604 4:-85817514 None:intergenic
AAATACATCAAAGGTGCTCC+GGG 0.501313 4:+85815130 MsG0480023482.01.T01:intron
AGTAGTGCAGTGATATCGGC+AGG 0.501461 4:-85819350 None:intergenic
TTATCATTGCATAGTAATCC+AGG 0.502501 4:-85818815 None:intergenic
CTAACTGCAAAGGAAATGTC+TGG 0.506146 4:-85815043 None:intergenic
GAAATTGTACCAGGAGAAGC+AGG 0.506810 4:+85817505 MsG0480023482.01.T01:CDS
TAGGCCTCAAACCATTGGTC+AGG 0.506876 4:+85819304 MsG0480023482.01.T01:exon
TAGCGTACCTTGTTAACATC+CGG 0.521224 4:-85817285 None:intergenic
GATTGATAGATGATAGGCGT+TGG 0.521496 4:+85817483 MsG0480023482.01.T01:CDS
GGGGAGCCTTTATCTGATCC+AGG 0.522608 4:+85814971 MsG0480023482.01.T01:intron
TCAGGCACATCTCGACCCTC+CGG 0.523287 4:-85816087 None:intergenic
TACTCTGCTCGCCTGACCAA+TGG 0.524690 4:-85819315 None:intergenic
CGAATTCTTAAATACATCAA+AGG 0.524831 4:+85815121 MsG0480023482.01.T01:intron
AAAGGACATACTCAGATAGT+TGG 0.526869 4:+85815175 MsG0480023482.01.T01:intron
TCCAGGAAGATATAGGAGAT+TGG 0.529433 4:+85814988 MsG0480023482.01.T01:intron
GGAAGATATAGGAGATTGGT+TGG 0.533028 4:+85814992 MsG0480023482.01.T01:intron
GGTCAGATAAATGGAACTAC+AGG 0.534465 4:+85816933 MsG0480023482.01.T01:CDS
TCATATTCCACAGCATATGC+AGG 0.537782 4:-85816843 None:intergenic
TGGTTACTCAGATGCTGACT+GGG 0.539658 4:+85815195 MsG0480023482.01.T01:intron
GGAAAAGGAACTGTTTGTAG+TGG 0.542332 4:+85819593 MsG0480023482.01.T01:exon
GAAGTGGATCGTCTATCAAT+GGG 0.542824 4:-85815226 None:intergenic
TTGGTCCTTGCATGGAACAC+TGG 0.543322 4:-85815469 None:intergenic
ACGGACATACCTGTTGAAGT+TGG 0.544160 4:-85818620 None:intergenic
GGGAAAAGGTCTCATTTATG+AGG 0.545313 4:+85815150 MsG0480023482.01.T01:intron
TCAAATATTTCTTGAACCGG+AGG 0.549373 4:+85816071 MsG0480023482.01.T01:CDS
TTGAAAACTGTTCCATGTTG+AGG 0.551231 4:+85816820 MsG0480023482.01.T01:CDS
TCATTGAGCTCGAAGCCAAA+AGG 0.552850 4:+85819372 MsG0480023482.01.T01:exon
CAAATCCAGTGTTCCATGCA+AGG 0.555536 4:+85815464 MsG0480023482.01.T01:intron
CATTTCCTTTGCAGTTAGTG+TGG 0.557115 4:+85815048 MsG0480023482.01.T01:intron
TATGGACTTCTTGATAAGCA+TGG 0.561182 4:+85818510 MsG0480023482.01.T01:CDS
ATTGGTCAGGCGAGCAGAGT+AGG 0.562350 4:+85819317 MsG0480023482.01.T01:exon
TACCTTGTTAACATCCGGTA+AGG 0.563074 4:-85817280 None:intergenic
CTTATGACTAAGAAAATACA+AGG 0.563517 4:+85816897 MsG0480023482.01.T01:CDS
GAAATTGATATTAAGTACGA+AGG 0.565120 4:+85818576 MsG0480023482.01.T01:CDS
AAGTACACAATACCCAGAAG+TGG 0.565151 4:-85815242 None:intergenic
GTCAAACTTCTACCTAATCA+GGG 0.565379 4:+85814950 MsG0480023482.01.T01:intron
TAAACCACTTCCTGAAGACC+TGG 0.566712 4:+85818797 MsG0480023482.01.T01:CDS
CAATCTTCTCTCTGACGAAG+TGG 0.571933 4:-85815510 None:intergenic
TGTACCAGGAGAAGCAGGCT+CGG 0.581258 4:+85817510 MsG0480023482.01.T01:CDS
GTCAGGCGAGCAGAGTAGGT+GGG 0.582607 4:+85819321 MsG0480023482.01.T01:exon
TAGGCGTTGGAAATTGTACC+AGG 0.582824 4:+85817496 MsG0480023482.01.T01:CDS
TATTTAGCCGCTCAGAGCAT+CGG 0.583046 4:+85817402 MsG0480023482.01.T01:intron
GCATTCATGTGTTCTTGGCA+AGG 0.583868 4:-85815091 None:intergenic
CTTACTTGCACATAGAGCTC+AGG 0.584501 4:-85816105 None:intergenic
TCAAACTTCTACCTAATCAG+GGG 0.587945 4:+85814951 MsG0480023482.01.T01:intron
TGAGGCAGAATATAGGGCCA+TGG 0.589107 4:+85815327 MsG0480023482.01.T01:intron
TTCACATGTTACTAGTGCCA+TGG 0.592809 4:-85815344 None:intergenic
CCAGGCAAAGTTCTCAGCAA+AGG 0.594246 4:-85816795 None:intergenic
TACCTGCTCATCAATGCTCT+AGG 0.597099 4:+85816871 MsG0480023482.01.T01:CDS
AACTTCAATTCGAAGAAGCA+CGG 0.598197 4:+85815395 MsG0480023482.01.T01:intron
TCAGGCGAGCAGAGTAGGTG+GGG 0.598429 4:+85819322 MsG0480023482.01.T01:exon
AAATATCAAAATCGGTAGAG+TGG 0.599923 4:-85819513 None:intergenic
GGTCAGGCGAGCAGAGTAGG+TGG 0.602163 4:+85819320 MsG0480023482.01.T01:exon
AGCATATGCAGGCCTCAACA+TGG 0.602444 4:-85816832 None:intergenic
ACATCCGGTAAGGCTCTCGC+AGG 0.608313 4:-85817270 None:intergenic
AGAAGTCCATATTGTATGTG+CGG 0.613059 4:-85818498 None:intergenic
CAAATATTTCTTGAACCGGA+GGG 0.614402 4:+85816072 MsG0480023482.01.T01:CDS
AGCCTTACCGGATGTTAACA+AGG 0.617788 4:+85817278 MsG0480023482.01.T01:CDS
GCCAAAAGGAGGAAAGCTCA+AGG 0.618296 4:+85819386 MsG0480023482.01.T01:exon
GCTTACCACACTAACTGCAA+AGG 0.628342 4:-85815053 None:intergenic
AATCCAATTTCACGACCCAA+AGG 0.632364 4:-85817464 None:intergenic
TTGAGCTCGAAGCCAAAAGG+AGG 0.634708 4:+85819375 MsG0480023482.01.T01:exon
GAAGCAGGCTCGGATTTCTG+AGG 0.639153 4:+85817520 MsG0480023482.01.T01:CDS
TCAAGCTAATACCCAAGATG+AGG 0.648293 4:+85819439 MsG0480023482.01.T01:exon
GGAAAGCTCAAGGACAGAGG+AGG 0.648717 4:+85819396 MsG0480023482.01.T01:exon
CACGACCCAAAGGAGTGAGA+CGG 0.651338 4:-85817454 None:intergenic
GGAGGAAAGCTCAAGGACAG+AGG 0.651565 4:+85819393 MsG0480023482.01.T01:exon
AACGCTGCTAGACATGCAGA+TGG 0.655157 4:+85817175 MsG0480023482.01.T01:CDS
AGATGGATAGATTGACAGAG+AGG 0.657489 4:+85819572 MsG0480023482.01.T01:exon
GTTGAGGCCTGCATATGCTG+TGG 0.682972 4:+85816836 MsG0480023482.01.T01:CDS
AATTGATGATCTAGTCACCA+AGG 0.684915 4:+85817246 MsG0480023482.01.T01:CDS
CAAACTTCTACCTAATCAGG+GGG 0.709028 4:+85814952 MsG0480023482.01.T01:intron
GTAGTGCAGTGATATCGGCA+GGG 0.712492 4:-85819349 None:intergenic
AAAGTAACCGATGCTCTGAG+CGG 0.714631 4:-85817409 None:intergenic
AGTTGCAAGATCAAGCGCTG+AGG 0.718838 4:+85815309 MsG0480023482.01.T01:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTATTAATAAGTTTCATT+TGG - Chr4:85816157-85816176 None:intergenic 10.0%
!! GATATAATATTTAAATACTA+TGG + Chr4:85816210-85816229 MsG0480023482.01.T01:intron 10.0%
!!! AAATCAAATAAATTTTCTTT+TGG - Chr4:85818356-85818375 None:intergenic 10.0%
!! AAAAAAAAAAAAAAGCAATC+AGG - Chr4:85817021-85817040 None:intergenic 15.0%
!! AATCAACAAAATAATAGTTA+AGG + Chr4:85816249-85816268 MsG0480023482.01.T01:intron 15.0%
!! TTACTACATTATTCTATAAT+AGG - Chr4:85817774-85817793 None:intergenic 15.0%
!!! AGTATTCTTAATTTTATAAG+GGG - Chr4:85815920-85815939 None:intergenic 15.0%
!!! ATATGTTTTTTTTATCTAGT+AGG + Chr4:85818329-85818348 MsG0480023482.01.T01:intron 15.0%
!!! GAGTATTCTTAATTTTATAA+GGG - Chr4:85815921-85815940 None:intergenic 15.0%
!!! TGAGTATTCTTAATTTTATA+AGG - Chr4:85815922-85815941 None:intergenic 15.0%
!! AAAAAGGATATAACAAGATT+TGG - Chr4:85816399-85816418 None:intergenic 20.0%
!! AAAACTTAGACATAATTAGT+TGG - Chr4:85817605-85817624 None:intergenic 20.0%
!! AAAATTTCTATCAGTTTATC+AGG - Chr4:85816425-85816444 None:intergenic 20.0%
!! AATATATGATCTATGTCTTA+AGG - Chr4:85818164-85818183 None:intergenic 20.0%
!! AATGAAAAAAGTTTATCCTT+TGG + Chr4:85817638-85817657 MsG0480023482.01.T01:intron 20.0%
!! ACAATTTCATAACATAGATT+AGG - Chr4:85819149-85819168 None:intergenic 20.0%
!! ATGAAAAAAGTTTATCCTTT+GGG + Chr4:85817639-85817658 MsG0480023482.01.T01:intron 20.0%
!! ATTTATCAACATAGACAATT+TGG + Chr4:85818884-85818903 MsG0480023482.01.T01:intron 20.0%
!! CATATAACAATAATCTGTAT+TGG - Chr4:85818188-85818207 None:intergenic 20.0%
!! TATTCTTCTTCTATCTTATA+GGG + Chr4:85816738-85816757 MsG0480023482.01.T01:intron 20.0%
!! TTAAAGAAATGTGTAATTTG+AGG + Chr4:85819655-85819674 MsG0480023482.01.T01:exon 20.0%
!! TTATTCTTCTTCTATCTTAT+AGG + Chr4:85816737-85816756 MsG0480023482.01.T01:intron 20.0%
!! TTCAAATATATATTTCGACT+TGG - Chr4:85816578-85816597 None:intergenic 20.0%
!!! GTATTCTTAATTTTATAAGG+GGG - Chr4:85815919-85815938 None:intergenic 20.0%
!!! GTCTAAGTTTTTTCTTTAAA+AGG + Chr4:85817614-85817633 MsG0480023482.01.T01:intron 20.0%
!!! TATATTTGAAACTCAATGAA+AGG + Chr4:85816588-85816607 MsG0480023482.01.T01:intron 20.0%
!!! TTGATTTCAACTTATTTTCA+AGG + Chr4:85819251-85819270 MsG0480023482.01.T01:intron 20.0%
!!! TTGTAGCTTTTATATTTCAT+AGG - Chr4:85819546-85819565 None:intergenic 20.0%
! AAAAGCTACAAAATCATAGA+TGG + Chr4:85819555-85819574 MsG0480023482.01.T01:exon 25.0%
! AAATTGGATTGATAGATGAT+AGG + Chr4:85817477-85817496 MsG0480023482.01.T01:CDS 25.0%
! AGAAGAAGAATAAGAAGTTA+CGG - Chr4:85816730-85816749 None:intergenic 25.0%
! ATATAGAAGTAAGTAGCTTA+GGG - Chr4:85815807-85815826 None:intergenic 25.0%
! ATTCTTCTTCTATCTTATAG+GGG + Chr4:85816739-85816758 MsG0480023482.01.T01:intron 25.0%
! CCACATATATAACTTATTCT+GGG - Chr4:85815613-85815632 None:intergenic 25.0%
! CGAATTCTTAAATACATCAA+AGG + Chr4:85815121-85815140 MsG0480023482.01.T01:intron 25.0%
! CTGTAAATATATCATAGCTT+AGG + Chr4:85815781-85815800 MsG0480023482.01.T01:intron 25.0%
! CTTATGACTAAGAAAATACA+AGG + Chr4:85816897-85816916 MsG0480023482.01.T01:CDS 25.0%
! GAAATTGATATTAAGTACGA+AGG + Chr4:85818576-85818595 MsG0480023482.01.T01:CDS 25.0%
! GATAAATATGTTACATACCT+TGG - Chr4:85818871-85818890 None:intergenic 25.0%
! GATTATTGTTATATGCACAA+TGG + Chr4:85818193-85818212 MsG0480023482.01.T01:intron 25.0%
! GCACAGATAAATATCAAAAT+CGG - Chr4:85819524-85819543 None:intergenic 25.0%
! GTTTAGTAATGACGAAAAAA+AGG + Chr4:85818956-85818975 MsG0480023482.01.T01:intron 25.0%
! TAAATTACAATGGATAAGAG+AGG - Chr4:85816648-85816667 None:intergenic 25.0%
! TAAGCTCTTATTATTTATGC+TGG + Chr4:85817078-85817097 MsG0480023482.01.T01:intron 25.0%
! TATATAGAAGTAAGTAGCTT+AGG - Chr4:85815808-85815827 None:intergenic 25.0%
! TATTATCGAGAAATGAGAAA+TGG - Chr4:85817358-85817377 None:intergenic 25.0%
! TATTGAATGTGTATTCTACA+AGG + Chr4:85819119-85819138 MsG0480023482.01.T01:intron 25.0%
! TCAGTTTATCAGGTTAAAAA+AGG - Chr4:85816415-85816434 None:intergenic 25.0%
! TCATCAAATATTTCTTGAAC+CGG + Chr4:85816068-85816087 MsG0480023482.01.T01:CDS 25.0%
! TCTCTTATCCATTGTAATTT+AGG + Chr4:85816647-85816666 MsG0480023482.01.T01:intron 25.0%
! TGAAAAAAGTTTATCCTTTG+GGG + Chr4:85817640-85817659 MsG0480023482.01.T01:intron 25.0%
! TGACAAGAATTTATCAAGAA+TGG + Chr4:85818539-85818558 MsG0480023482.01.T01:CDS 25.0%
! TTATCCATTGTAATTTAGGT+GGG + Chr4:85816651-85816670 MsG0480023482.01.T01:intron 25.0%
!! AGATACTTTGACATTTCTTT+TGG - Chr4:85819087-85819106 None:intergenic 25.0%
!!! ATTTTTCATTTTTTCCCTTG+AGG + Chr4:85816174-85816193 MsG0480023482.01.T01:intron 25.0%
!!! TTGAAAAGTGTCAAAATTTC+AGG + Chr4:85817554-85817573 MsG0480023482.01.T01:CDS 25.0%
!!! TTTTTCATTTTTTCCCTTGA+GGG + Chr4:85816175-85816194 MsG0480023482.01.T01:intron 25.0%
AAATATCAAAATCGGTAGAG+TGG - Chr4:85819516-85819535 None:intergenic 30.0%
AACAATACAGGATAGTGATA+TGG - Chr4:85818685-85818704 None:intergenic 30.0%
AATACAAGGATTGTTCTTCT+CGG + Chr4:85816911-85816930 MsG0480023482.01.T01:CDS 30.0%
ACAATTTGGTCATTAGAGTT+AGG + Chr4:85818898-85818917 MsG0480023482.01.T01:intron 30.0%
ACCTAAATTATCTCATTAGG+AGG + Chr4:85818396-85818415 MsG0480023482.01.T01:intron 30.0%
ACTCAATGAAAGGTGAATTT+AGG + Chr4:85816598-85816617 MsG0480023482.01.T01:intron 30.0%
ACTTACTCTCTAAGTTACTT+AGG + Chr4:85815732-85815751 MsG0480023482.01.T01:intron 30.0%
AGATTAGATTCAGTTGTCAT+TGG + Chr4:85817912-85817931 MsG0480023482.01.T01:intron 30.0%
ATGACAACTGAATCTAATCT+AGG - Chr4:85817912-85817931 None:intergenic 30.0%
CCCAGAATAAGTTATATATG+TGG + Chr4:85815610-85815629 MsG0480023482.01.T01:intron 30.0%
CCTAAATTATCTCATTAGGA+GGG + Chr4:85818397-85818416 MsG0480023482.01.T01:intron 30.0%
CGCAAAAATTAGAACAATAC+AGG - Chr4:85818697-85818716 None:intergenic 30.0%
CTAAATTATCTCATTAGGAG+GGG + Chr4:85818398-85818417 MsG0480023482.01.T01:intron 30.0%
CTCAATGAAAGGTGAATTTA+GGG + Chr4:85816599-85816618 MsG0480023482.01.T01:intron 30.0%
CTCACCTAAATTATCTCATT+AGG + Chr4:85818393-85818412 MsG0480023482.01.T01:intron 30.0%
CTCTTTCTGATGTTGTATAA+TGG + Chr4:85817046-85817065 MsG0480023482.01.T01:intron 30.0%
CTTATCCATTGTAATTTAGG+TGG + Chr4:85816650-85816669 MsG0480023482.01.T01:intron 30.0%
GATTAGATTCAGTTGTCATT+GGG + Chr4:85817913-85817932 MsG0480023482.01.T01:intron 30.0%
GCCACATATATAACTTATTC+TGG - Chr4:85815614-85815633 None:intergenic 30.0%
GCTTCTAGATTATCTACAAT+CGG + Chr4:85817997-85818016 MsG0480023482.01.T01:intron 30.0%
GTTGAATTGAAGCAAGTTAA+TGG + Chr4:85816532-85816551 MsG0480023482.01.T01:intron 30.0%
TACTAAACTTGTGGATCTAA+AGG - Chr4:85818944-85818963 None:intergenic 30.0%
TAGTAACATGTGAACTCATT+TGG + Chr4:85815353-85815372 MsG0480023482.01.T01:intron 30.0%
TATCCATTGTAATTTAGGTG+GGG + Chr4:85816652-85816671 MsG0480023482.01.T01:intron 30.0%
TGCATTGTTAATACATACAC+AGG + Chr4:85818086-85818105 MsG0480023482.01.T01:intron 30.0%
TGTGAAAAACTCTTCAACAT+TGG + Chr4:85818458-85818477 MsG0480023482.01.T01:CDS 30.0%
TTATATGCACAATGGAAACA+TGG + Chr4:85818201-85818220 MsG0480023482.01.T01:intron 30.0%
TTATCACATATAAGCGTCAT+TGG - Chr4:85815421-85815440 None:intergenic 30.0%
TTATCATTGCATAGTAATCC+AGG - Chr4:85818818-85818837 None:intergenic 30.0%
TTTCGTCATTACTAAACTTG+TGG - Chr4:85818953-85818972 None:intergenic 30.0%
! AATGTTGAAGAGTTTTTCAC+AGG - Chr4:85818459-85818478 None:intergenic 30.0%
! AATTTTGTAGTACGAGAATG+TGG + Chr4:85817809-85817828 MsG0480023482.01.T01:intron 30.0%
! ACTTTGACATTTCTTTTGGA+GGG - Chr4:85819083-85819102 None:intergenic 30.0%
! ATTTTGTAGTACGAGAATGT+GGG + Chr4:85817810-85817829 MsG0480023482.01.T01:intron 30.0%
! CAAGTTCTGTCAATGATTTT+AGG + Chr4:85819280-85819299 MsG0480023482.01.T01:intron 30.0%
! CAATATTGACTAGAGATTGA+AGG - Chr4:85819057-85819076 None:intergenic 30.0%
! CAGATCATAACTTTTCTGAA+AGG - Chr4:85815958-85815977 None:intergenic 30.0%
! TACTTTGACATTTCTTTTGG+AGG - Chr4:85819084-85819103 None:intergenic 30.0%
! TTTTAGTCACGTACAATTGT+TGG + Chr4:85817682-85817701 MsG0480023482.01.T01:intron 30.0%
!!! AGTTTTATTTTCTTGCCTGA+TGG + Chr4:85816492-85816511 MsG0480023482.01.T01:intron 30.0%
!!! TATGTACCTGTTTTAAGACA+CGG + Chr4:85816318-85816337 MsG0480023482.01.T01:intron 30.0%
!!! TCTGTCAATGATTTTAGGTT+AGG + Chr4:85819285-85819304 MsG0480023482.01.T01:intron 30.0%
AAACTTGTGGATCTAAAGGT+TGG - Chr4:85818940-85818959 None:intergenic 35.0%
AAAGGACATACTCAGATAGT+TGG + Chr4:85815175-85815194 MsG0480023482.01.T01:intron 35.0%
AACATATGTTGCCAAGAGAA+TGG - Chr4:85818316-85818335 None:intergenic 35.0%
AACTTCAATTCGAAGAAGCA+CGG + Chr4:85815395-85815414 MsG0480023482.01.T01:intron 35.0%
AAGAAACCGCACATACAATA+TGG + Chr4:85818492-85818511 MsG0480023482.01.T01:CDS 35.0%
AATGAGTAGTGCAGTGATAT+CGG - Chr4:85819357-85819376 None:intergenic 35.0%
AATGGAAACATGGTACTTAG+TGG + Chr4:85818211-85818230 MsG0480023482.01.T01:intron 35.0%
AATTACATCCTTGTTCCATC+AGG - Chr4:85816510-85816529 None:intergenic 35.0%
ACTATAGGAAAAACAGGACT+TGG - Chr4:85817736-85817755 None:intergenic 35.0%
AGAAGTCCATATTGTATGTG+CGG - Chr4:85818501-85818520 None:intergenic 35.0%
AGTTATATATGTGGCAAGCT+TGG + Chr4:85815619-85815638 MsG0480023482.01.T01:intron 35.0%
ATACAAGGATTGTTCTTCTC+GGG + Chr4:85816912-85816931 MsG0480023482.01.T01:CDS 35.0%
ATAGATTGACAGAGAGGAAA+AGG + Chr4:85819578-85819597 MsG0480023482.01.T01:exon 35.0%
ATAGTCATCAATCGCAAAAG+TGG + Chr4:85816277-85816296 MsG0480023482.01.T01:intron 35.0%
ATCCATTGTAATTTAGGTGG+GGG + Chr4:85816653-85816672 MsG0480023482.01.T01:intron 35.0%
ATTACTGTTGTCCATTCTCT+TGG + Chr4:85818302-85818321 MsG0480023482.01.T01:intron 35.0%
ATTTCTACTTCACACTAGCA+TGG - Chr4:85818268-85818287 None:intergenic 35.0%
CAAATATTTCTTGAACCGGA+GGG + Chr4:85816072-85816091 MsG0480023482.01.T01:CDS 35.0%
CAATTGTACGTGACTAAAAG+AGG - Chr4:85817681-85817700 None:intergenic 35.0%
CCCTCCTAATGAGATAATTT+AGG - Chr4:85818400-85818419 None:intergenic 35.0%
CTACAGACTATAGGAAAAAC+AGG - Chr4:85817742-85817761 None:intergenic 35.0%
CTACTGGTATATTTGTCTAG+TGG + Chr4:85818237-85818256 MsG0480023482.01.T01:intron 35.0%
CTATAGGAAAAACAGGACTT+GGG - Chr4:85817735-85817754 None:intergenic 35.0%
CTCTCCTTCTCAAGATAAAA+AGG - Chr4:85816703-85816722 None:intergenic 35.0%
GAGAAATGAGAAATGGAATG+AGG - Chr4:85817351-85817370 None:intergenic 35.0%
GATGGAACAAGGATGTAATT+TGG + Chr4:85816510-85816529 MsG0480023482.01.T01:intron 35.0%
GCAATCTATCTCGATATGTT+TGG - Chr4:85815491-85815510 None:intergenic 35.0%
GCTCCAGTTAACATGTATAA+CGG - Chr4:85818642-85818661 None:intergenic 35.0%
GCTGAAATTACTGTTATGTC+TGG + Chr4:85818429-85818448 MsG0480023482.01.T01:CDS 35.0%
GGCAAGGAGAATTTAAGAAT+TGG - Chr4:85815078-85815097 None:intergenic 35.0%
GGTCTCATTTATGAGGATAA+AGG + Chr4:85815157-85815176 MsG0480023482.01.T01:intron 35.0%
GTCAAACTTCTACCTAATCA+GGG + Chr4:85814950-85814969 MsG0480023482.01.T01:intron 35.0%
GTCAAATCTCATTGTTGTGT+TGG + Chr4:85818746-85818765 MsG0480023482.01.T01:intron 35.0%
GTTTCAGTCAAAGAAACTTC+AGG - Chr4:85819467-85819486 None:intergenic 35.0%
TACTGTTAGCTACAGACTAT+AGG - Chr4:85817751-85817770 None:intergenic 35.0%
TAGATTATCTACAATCGGCT+TGG + Chr4:85818002-85818021 MsG0480023482.01.T01:intron 35.0%
TATAGGAAAAACAGGACTTG+GGG - Chr4:85817734-85817753 None:intergenic 35.0%
TATCTGATCCAGGAAGATAT+AGG + Chr4:85814981-85815000 MsG0480023482.01.T01:intron 35.0%
TATCTTCCTGGATCAGATAA+AGG - Chr4:85814980-85814999 None:intergenic 35.0%
TATGGACTTCTTGATAAGCA+TGG + Chr4:85818510-85818529 MsG0480023482.01.T01:CDS 35.0%
TCAAACTTCTACCTAATCAG+GGG + Chr4:85814951-85814970 MsG0480023482.01.T01:intron 35.0%
TCAAATATTTCTTGAACCGG+AGG + Chr4:85816071-85816090 MsG0480023482.01.T01:CDS 35.0%
TCCTTCTCAAGATAAAAAGG+AGG - Chr4:85816700-85816719 None:intergenic 35.0%
TCTTACTCTTCCATGATATC+AGG - Chr4:85815279-85815298 None:intergenic 35.0%
TGCGCATTATAGAATTTCAG+AGG + Chr4:85818713-85818732 MsG0480023482.01.T01:intron 35.0%
TGTCAAACTTCTACCTAATC+AGG + Chr4:85814949-85814968 MsG0480023482.01.T01:intron 35.0%
TGTCCGTTATACATGTTAAC+TGG + Chr4:85818636-85818655 MsG0480023482.01.T01:intron 35.0%
TTAACGCATTCATGTGTTCT+TGG - Chr4:85815099-85815118 None:intergenic 35.0%
TTGAAAACTGTTCCATGTTG+AGG + Chr4:85816820-85816839 MsG0480023482.01.T01:CDS 35.0%
TTGGTCATTAGAGTTAGGTT+GGG + Chr4:85818903-85818922 MsG0480023482.01.T01:intron 35.0%
TTGTTGAGTAACCATCTACA+TGG - Chr4:85818775-85818794 None:intergenic 35.0%
TTTGATGAGACTCTTTGTCT+TGG - Chr4:85816056-85816075 None:intergenic 35.0%
TTTGGTCATTAGAGTTAGGT+TGG + Chr4:85818902-85818921 MsG0480023482.01.T01:intron 35.0%
! AATTGATGATCTAGTCACCA+AGG + Chr4:85817246-85817265 MsG0480023482.01.T01:CDS 35.0%
! ATCTTGGGTATTAGCTTGAA+TGG - Chr4:85819438-85819457 None:intergenic 35.0%
! CAGGTACATATATTTGTTGC+AGG - Chr4:85816308-85816327 None:intergenic 35.0%
! CTTCTTGATAAGCATGGTTT+TGG + Chr4:85818516-85818535 MsG0480023482.01.T01:CDS 35.0%
! CTTTTTATCTTGAGAAGGAG+AGG + Chr4:85816701-85816720 MsG0480023482.01.T01:intron 35.0%
! GATTGAAGGTTTGTTTGACT+CGG - Chr4:85819043-85819062 None:intergenic 35.0%
! GTTTTTACAAAATCTCTGCG+AGG + Chr4:85815586-85815605 MsG0480023482.01.T01:intron 35.0%
! TCATAAATGAGACCTTTTCC+CGG - Chr4:85815151-85815170 None:intergenic 35.0%
!! TAAATACATCAAAGGTGCTC+CGG + Chr4:85815129-85815148 MsG0480023482.01.T01:intron 35.0%
!! TATTTGCTGTACACAACGAT+GGG - Chr4:85819213-85819232 None:intergenic 35.0%
!!! CTACTCTTTTTTATCCTCCA+GGG + Chr4:85817136-85817155 MsG0480023482.01.T01:intron 35.0%
!!! TCTACTCTTTTTTATCCTCC+AGG + Chr4:85817135-85817154 MsG0480023482.01.T01:intron 35.0%
AAGTACACAATACCCAGAAG+TGG - Chr4:85815245-85815264 None:intergenic 40.0%
AATCCAATTTCACGACCCAA+AGG - Chr4:85817467-85817486 None:intergenic 40.0%
AATTAGTTGGCACACATGCA+TGG - Chr4:85817592-85817611 None:intergenic 40.0%
ACCAATCTCCTATATCTTCC+TGG - Chr4:85814992-85815011 None:intergenic 40.0%
ACTTATATGCTCCAGCTTGA+GGG + Chr4:85815650-85815669 MsG0480023482.01.T01:intron 40.0%
AGAAGTGGATCGTCTATCAA+TGG - Chr4:85815230-85815249 None:intergenic 40.0%
AGATGGATAGATTGACAGAG+AGG + Chr4:85819572-85819591 MsG0480023482.01.T01:exon 40.0%
AGCTCGTGAAAAACTTTCCA+AGG + Chr4:85818851-85818870 MsG0480023482.01.T01:CDS 40.0%
ATCTTATAGGGGTTCTCAAC+CGG + Chr4:85816750-85816769 MsG0480023482.01.T01:intron 40.0%
ATTGATAGACGATCCACTTC+TGG + Chr4:85815229-85815248 MsG0480023482.01.T01:intron 40.0%
ATTGCTCATACCTCAGATGT+AGG - Chr4:85816374-85816393 None:intergenic 40.0%
CAAACTTCTACCTAATCAGG+GGG + Chr4:85814952-85814971 MsG0480023482.01.T01:intron 40.0%
CATCGTTGTGTACAGCAAAT+AGG + Chr4:85819212-85819231 MsG0480023482.01.T01:intron 40.0%
CATTTCCTTTGCAGTTAGTG+TGG + Chr4:85815048-85815067 MsG0480023482.01.T01:intron 40.0%
CTAACTGCAAAGGAAATGTC+TGG - Chr4:85815046-85815065 None:intergenic 40.0%
GAAGTGGATCGTCTATCAAT+GGG - Chr4:85815229-85815248 None:intergenic 40.0%
GATTGATAGATGATAGGCGT+TGG + Chr4:85817483-85817502 MsG0480023482.01.T01:CDS 40.0%
GGAAAAGGAACTGTTTGTAG+TGG + Chr4:85819593-85819612 MsG0480023482.01.T01:exon 40.0%
GGAAGATATAGGAGATTGGT+TGG + Chr4:85814992-85815011 MsG0480023482.01.T01:intron 40.0%
GGGAAAAGGTCTCATTTATG+AGG + Chr4:85815150-85815169 MsG0480023482.01.T01:intron 40.0%
GGTCAGATAAATGGAACTAC+AGG + Chr4:85816933-85816952 MsG0480023482.01.T01:CDS 40.0%
GTATGTGCGGTTTCTTAAGA+AGG - Chr4:85818488-85818507 None:intergenic 40.0%
GTCAGAGAGAAGATTGAATC+TGG + Chr4:85815517-85815536 MsG0480023482.01.T01:intron 40.0%
TACCTTGTTAACATCCGGTA+AGG - Chr4:85817283-85817302 None:intergenic 40.0%
TAGCGTACCTTGTTAACATC+CGG - Chr4:85817288-85817307 None:intergenic 40.0%
TATCTCATTAGGAGGGGATT+TGG + Chr4:85818404-85818423 MsG0480023482.01.T01:intron 40.0%
TCAAGCTAATACCCAAGATG+AGG + Chr4:85819439-85819458 MsG0480023482.01.T01:exon 40.0%
TCATATTCCACAGCATATGC+AGG - Chr4:85816846-85816865 None:intergenic 40.0%
TCCAGGAAGATATAGGAGAT+TGG + Chr4:85814988-85815007 MsG0480023482.01.T01:intron 40.0%
TCCATTGTAATTTAGGTGGG+GGG + Chr4:85816654-85816673 MsG0480023482.01.T01:intron 40.0%
TGATACCAGAAATAATGCCC+TGG - Chr4:85817156-85817175 None:intergenic 40.0%
TGGTACTTAGTGGAAACTAC+TGG + Chr4:85818221-85818240 MsG0480023482.01.T01:intron 40.0%
TGTGTTGGATTCCATGTAGA+TGG + Chr4:85818761-85818780 MsG0480023482.01.T01:intron 40.0%
TTCACATGTTACTAGTGCCA+TGG - Chr4:85815347-85815366 None:intergenic 40.0%
TTCTTCTCGGGTCAGATAAA+TGG + Chr4:85816924-85816943 MsG0480023482.01.T01:CDS 40.0%
TTGACTGAAACAGCTAGATC+TGG + Chr4:85819476-85819495 MsG0480023482.01.T01:exon 40.0%
TTGATAGACGATCCACTTCT+GGG + Chr4:85815230-85815249 MsG0480023482.01.T01:intron 40.0%
TTGGAGGAAACCTGATATCA+TGG + Chr4:85815266-85815285 MsG0480023482.01.T01:intron 40.0%
TTGGTTGAAGCAGCTACTTA+AGG + Chr4:85815372-85815391 MsG0480023482.01.T01:intron 40.0%
! GCCTCCTTTTTATCTTGAGA+AGG + Chr4:85816696-85816715 MsG0480023482.01.T01:intron 40.0%
! TCTGGGTATTGTGTACTTGT+TGG + Chr4:85815247-85815266 MsG0480023482.01.T01:intron 40.0%
! TTTTCTTGCCTGATGGAACA+AGG + Chr4:85816499-85816518 MsG0480023482.01.T01:intron 40.0%
!! AAATACATCAAAGGTGCTCC+GGG + Chr4:85815130-85815149 MsG0480023482.01.T01:intron 40.0%
!! CTATTTGCTGTACACAACGA+TGG - Chr4:85819214-85819233 None:intergenic 40.0%
!!! ATGGAACAGTTTTCAAGTCC+AGG - Chr4:85816816-85816835 None:intergenic 40.0%
!!! TCATTTTTTCCCTTGAGGGT+GGG + Chr4:85816179-85816198 MsG0480023482.01.T01:intron 40.0%
!!! TTCATTTTTTCCCTTGAGGG+TGG + Chr4:85816178-85816197 MsG0480023482.01.T01:intron 40.0%
AAACTTCAGGCTCCTCATCT+TGG - Chr4:85819454-85819473 None:intergenic 45.0%
AAAGGCAACTGTAGTCTCTC+AGG - Chr4:85816780-85816799 None:intergenic 45.0%
AACTTCAGGCTCCTCATCTT+GGG - Chr4:85819453-85819472 None:intergenic 45.0%
ACCCCCCACCTAAATTACAA+TGG - Chr4:85816658-85816677 None:intergenic 45.0%
ACGGACATACCTGTTGAAGT+TGG - Chr4:85818623-85818642 None:intergenic 45.0%
ACTCCTTTGGGTCGTGAAAT+TGG + Chr4:85817461-85817480 MsG0480023482.01.T01:CDS 45.0%
AGCCTTACCGGATGTTAACA+AGG + Chr4:85817278-85817297 MsG0480023482.01.T01:CDS 45.0%
CAAATCCAGTGTTCCATGCA+AGG + Chr4:85815464-85815483 MsG0480023482.01.T01:intron 45.0%
CAATCTTCTCTCTGACGAAG+TGG - Chr4:85815513-85815532 None:intergenic 45.0%
CCAACTTTACGAAACAACGC+AGG + Chr4:85816453-85816472 MsG0480023482.01.T01:intron 45.0%
CGATATGTTTGGTCCTTGCA+TGG - Chr4:85815480-85815499 None:intergenic 45.0%
CGTGTGTCTGAATAGCACAA+CGG - Chr4:85815840-85815859 None:intergenic 45.0%
CTTACTTGCACATAGAGCTC+AGG - Chr4:85816108-85816127 None:intergenic 45.0%
CTTATATGCTCCAGCTTGAG+GGG + Chr4:85815651-85815670 MsG0480023482.01.T01:intron 45.0%
GAAATTGTACCAGGAGAAGC+AGG + Chr4:85817505-85817524 MsG0480023482.01.T01:CDS 45.0%
GACTTATATGCTCCAGCTTG+AGG + Chr4:85815649-85815668 MsG0480023482.01.T01:intron 45.0%
GAGAGAGAGAGCAGTTACAT+AGG + Chr4:85817217-85817236 MsG0480023482.01.T01:CDS 45.0%
GCATAGTAATCCAGGTCTTC+AGG - Chr4:85818810-85818829 None:intergenic 45.0%
GCATCACCGTGTCTTAAAAC+AGG - Chr4:85816327-85816346 None:intergenic 45.0%
GCATTCATGTGTTCTTGGCA+AGG - Chr4:85815094-85815113 None:intergenic 45.0%
GCTTACCACACTAACTGCAA+AGG - Chr4:85815056-85815075 None:intergenic 45.0%
GTAATTTAGGTGGGGGGTTA+TGG + Chr4:85816660-85816679 MsG0480023482.01.T01:intron 45.0%
TAAACCACTTCCTGAAGACC+TGG + Chr4:85818797-85818816 MsG0480023482.01.T01:CDS 45.0%
TAATCCAGGTCTTCAGGAAG+TGG - Chr4:85818804-85818823 None:intergenic 45.0%
TACCAGAAATAATGCCCTGG+AGG - Chr4:85817153-85817172 None:intergenic 45.0%
TACCTGCTCATCAATGCTCT+AGG + Chr4:85816871-85816890 MsG0480023482.01.T01:CDS 45.0%
TAGGTTAGGCCTCAAACCAT+TGG + Chr4:85819299-85819318 MsG0480023482.01.T01:intron 45.0%
TATTTAGCCGCTCAGAGCAT+CGG + Chr4:85817402-85817421 MsG0480023482.01.T01:intron 45.0%
TCAGCAAAGCCAACTTCAAC+AGG + Chr4:85818611-85818630 MsG0480023482.01.T01:CDS 45.0%
TCATTGAGCTCGAAGCCAAA+AGG + Chr4:85819372-85819391 MsG0480023482.01.T01:exon 45.0%
TGCATGGAACACTGGATTTG+AGG - Chr4:85815464-85815483 None:intergenic 45.0%
TTACGAAACAACGCAGGAAG+AGG + Chr4:85816459-85816478 MsG0480023482.01.T01:intron 45.0%
TTATATGCTCCAGCTTGAGG+GGG + Chr4:85815652-85815671 MsG0480023482.01.T01:intron 45.0%
TTGGTTACTCAGATGCTGAC+TGG + Chr4:85815194-85815213 MsG0480023482.01.T01:intron 45.0%
! AAAGTAACCGATGCTCTGAG+CGG - Chr4:85817412-85817431 None:intergenic 45.0%
! AACCAACTTGCTTTCCCCAA+AGG - Chr4:85817657-85817676 None:intergenic 45.0%
! ATCCTCCAGGGCATTATTTC+TGG + Chr4:85817148-85817167 MsG0480023482.01.T01:intron 45.0%
! ATCCTTTGGGGAAAGCAAGT+TGG + Chr4:85817652-85817671 MsG0480023482.01.T01:intron 45.0%
! CCTGCGTTGTTTCGTAAAGT+TGG - Chr4:85816456-85816475 None:intergenic 45.0%
! CGTTGTGCTATTCAGACACA+CGG + Chr4:85815838-85815857 MsG0480023482.01.T01:intron 45.0%
! GGGTATTGTGTACTTGTTGG+AGG + Chr4:85815250-85815269 MsG0480023482.01.T01:intron 45.0%
! TCCTTGAGCTTTCCTCCTTT+TGG - Chr4:85819390-85819409 None:intergenic 45.0%
! TGGTTACTCAGATGCTGACT+GGG + Chr4:85815195-85815214 MsG0480023482.01.T01:intron 45.0%
!! AAGCGCTGAGGCAGAATATA+GGG + Chr4:85815321-85815340 MsG0480023482.01.T01:intron 45.0%
!! GTAGAAGCATCCTACATCTG+AGG + Chr4:85816361-85816380 MsG0480023482.01.T01:intron 45.0%
!! TAGGCGTTGGAAATTGTACC+AGG + Chr4:85817496-85817515 MsG0480023482.01.T01:CDS 45.0%
!! TTGGCCTTGATTGAGACAAC+AGG + Chr4:85817701-85817720 MsG0480023482.01.T01:intron 45.0%
AAAAACAGGACTTGGGGAGG+GGG - Chr4:85817728-85817747 None:intergenic 50.0%
AACGCTGCTAGACATGCAGA+TGG + Chr4:85817175-85817194 MsG0480023482.01.T01:CDS 50.0%
AGCATATGCAGGCCTCAACA+TGG - Chr4:85816835-85816854 None:intergenic 50.0%
AGGAAAAACAGGACTTGGGG+AGG - Chr4:85817731-85817750 None:intergenic 50.0%
AGTAGTGCAGTGATATCGGC+AGG - Chr4:85819353-85819372 None:intergenic 50.0%
CCAGGCAAAGTTCTCAGCAA+AGG - Chr4:85816798-85816817 None:intergenic 50.0%
CCTTTGCTGAGAACTTTGCC+TGG + Chr4:85816795-85816814 MsG0480023482.01.T01:CDS 50.0%
CTATGAAGAAGCTGCAGCAC+AGG + Chr4:85816956-85816975 MsG0480023482.01.T01:CDS 50.0%
CTGTAGTCTCTCAGGCAAAC+CGG - Chr4:85816772-85816791 None:intergenic 50.0%
GAAAAACAGGACTTGGGGAG+GGG - Chr4:85817729-85817748 None:intergenic 50.0%
GAGAATGTGGGAGCAAGTGA+TGG + Chr4:85817822-85817841 MsG0480023482.01.T01:intron 50.0%
GATAAAGGCTCCCCCTGATT+AGG - Chr4:85814965-85814984 None:intergenic 50.0%
GATAGCCGTCTCACTCCTTT+GGG + Chr4:85817449-85817468 MsG0480023482.01.T01:CDS 50.0%
GCCAAAAGGAGGAAAGCTCA+AGG + Chr4:85819386-85819405 MsG0480023482.01.T01:exon 50.0%
GGAAAAACAGGACTTGGGGA+GGG - Chr4:85817730-85817749 None:intergenic 50.0%
GGATTGACGTCTCTCTGTCA+TGG - Chr4:85819192-85819211 None:intergenic 50.0%
GTAGTGCAGTGATATCGGCA+GGG - Chr4:85819352-85819371 None:intergenic 50.0%
TAGGCCTCAAACCATTGGTC+AGG + Chr4:85819304-85819323 MsG0480023482.01.T01:exon 50.0%
TGACGTCTCTCTGTCATGGT+CGG - Chr4:85819188-85819207 None:intergenic 50.0%
TGAGGCAGAATATAGGGCCA+TGG + Chr4:85815327-85815346 MsG0480023482.01.T01:intron 50.0%
TGATAGCCGTCTCACTCCTT+TGG + Chr4:85817448-85817467 MsG0480023482.01.T01:CDS 50.0%
TTGAGCTCGAAGCCAAAAGG+AGG + Chr4:85819375-85819394 MsG0480023482.01.T01:exon 50.0%
TTGGTCCTTGCATGGAACAC+TGG - Chr4:85815472-85815491 None:intergenic 50.0%
! AGTTGCAAGATCAAGCGCTG+AGG + Chr4:85815309-85815328 MsG0480023482.01.T01:intron 50.0%
! GCTCTGAGCGGCTAAATATC+AGG - Chr4:85817400-85817419 None:intergenic 50.0%
!! ATCAAAGGTGCTCCGGGAAA+AGG + Chr4:85815136-85815155 MsG0480023482.01.T01:intron 50.0%
!! CAAGCGCTGAGGCAGAATAT+AGG + Chr4:85815320-85815339 MsG0480023482.01.T01:intron 50.0%
!! GACCTAGAGCATTGATGAGC+AGG - Chr4:85816876-85816895 None:intergenic 50.0%
!! TCGGCTTGGCTTATGTCATG+TGG + Chr4:85818016-85818035 MsG0480023482.01.T01:intron 50.0%
AAAACAGGACTTGGGGAGGG+GGG - Chr4:85817727-85817746 None:intergenic 55.0%
AAATCCGAGCCTGCTTCTCC+TGG - Chr4:85817517-85817536 None:intergenic 55.0%
ATCAACACTCCCCCTCAAGC+TGG - Chr4:85815664-85815683 None:intergenic 55.0%
ATTGGTCAGGCGAGCAGAGT+AGG + Chr4:85819317-85819336 MsG0480023482.01.T01:exon 55.0%
CACGACCCAAAGGAGTGAGA+CGG - Chr4:85817457-85817476 None:intergenic 55.0%
CTCGCCTGACCAATGGTTTG+AGG - Chr4:85819311-85819330 None:intergenic 55.0%
CTGACTCAACCCACCCTCAA+GGG - Chr4:85816191-85816210 None:intergenic 55.0%
GAAGCAGGCTCGGATTTCTG+AGG + Chr4:85817520-85817539 MsG0480023482.01.T01:CDS 55.0%
GGAAAGCTCAAGGACAGAGG+AGG + Chr4:85819396-85819415 MsG0480023482.01.T01:exon 55.0%
GGAGGAAAGCTCAAGGACAG+AGG + Chr4:85819393-85819412 MsG0480023482.01.T01:exon 55.0%
GGGGAGCCTTTATCTGATCC+AGG + Chr4:85814971-85814990 MsG0480023482.01.T01:intron 55.0%
GGGGCCTGTTGTCTCAATCA+AGG - Chr4:85817708-85817727 None:intergenic 55.0%
GTCTCTCTGTCATGGTCGGT+CGG - Chr4:85819184-85819203 None:intergenic 55.0%
GTTGAGGCCTGCATATGCTG+TGG + Chr4:85816836-85816855 MsG0480023482.01.T01:CDS 55.0%
TACTCTGCTCGCCTGACCAA+TGG - Chr4:85819318-85819337 None:intergenic 55.0%
TCTGACTCAACCCACCCTCA+AGG - Chr4:85816192-85816211 None:intergenic 55.0%
TGTACCAGGAGAAGCAGGCT+CGG + Chr4:85817510-85817529 MsG0480023482.01.T01:CDS 55.0%
! TACTCAGATGCTGACTGGGC+AGG + Chr4:85815199-85815218 MsG0480023482.01.T01:intron 55.0%
ACATCCGGTAAGGCTCTCGC+AGG - Chr4:85817273-85817292 None:intergenic 60.0%
AGGACCTGCGAGAGCCTTAC+CGG + Chr4:85817266-85817285 MsG0480023482.01.T01:CDS 60.0%
GTAAGGCTCTCGCAGGTCCT+TGG - Chr4:85817266-85817285 None:intergenic 60.0%
GTCAGGCGAGCAGAGTAGGT+GGG + Chr4:85819321-85819340 MsG0480023482.01.T01:exon 60.0%
TCAGGCACATCTCGACCCTC+CGG - Chr4:85816090-85816109 None:intergenic 60.0%
TCAGGCGAGCAGAGTAGGTG+GGG + Chr4:85819322-85819341 MsG0480023482.01.T01:exon 60.0%
GGTCAGGCGAGCAGAGTAGG+TGG + Chr4:85819320-85819339 MsG0480023482.01.T01:exon 65.0%
Chromosome Type Strat End Strand Name
Chr4 gene 85814938 85819708 85814938 ID=MsG0480023483.01;Name=MsG0480023483.01
Chr4 mRNA 85814938 85819708 85814938 ID=MsG0480023483.01.T01;Parent=MsG0480023483.01;Name=MsG0480023483.01.T01;_AED=0.49;_eAED=0.65;_QI=0|0.85|0.87|1|1|1|8|206|576
Chr4 exon 85814938 85815546 85814938 ID=MsG0480023483.01.T01:exon:6287;Parent=MsG0480023483.01.T01
Chr4 exon 85816042 85816122 85816042 ID=MsG0480023483.01.T01:exon:6288;Parent=MsG0480023483.01.T01
Chr4 exon 85816759 85816977 85816759 ID=MsG0480023483.01.T01:exon:6289;Parent=MsG0480023483.01.T01
Chr4 exon 85817157 85817299 85817157 ID=MsG0480023483.01.T01:exon:6290;Parent=MsG0480023483.01.T01
Chr4 exon 85817409 85817575 85817409 ID=MsG0480023483.01.T01:exon:6291;Parent=MsG0480023483.01.T01
Chr4 exon 85818415 85818632 85818415 ID=MsG0480023483.01.T01:exon:6292;Parent=MsG0480023483.01.T01
Chr4 exon 85818780 85818872 85818780 ID=MsG0480023483.01.T01:exon:6293;Parent=MsG0480023483.01.T01
Chr4 exon 85819302 85819708 85819302 ID=MsG0480023483.01.T01:exon:6294;Parent=MsG0480023483.01.T01
Chr4 CDS 85814938 85815546 85814938 ID=MsG0480023483.01.T01:cds;Parent=MsG0480023483.01.T01
Chr4 CDS 85816042 85816122 85816042 ID=MsG0480023483.01.T01:cds;Parent=MsG0480023483.01.T01
Chr4 CDS 85816759 85816977 85816759 ID=MsG0480023483.01.T01:cds;Parent=MsG0480023483.01.T01
Chr4 CDS 85817157 85817299 85817157 ID=MsG0480023483.01.T01:cds;Parent=MsG0480023483.01.T01
Chr4 CDS 85817409 85817575 85817409 ID=MsG0480023483.01.T01:cds;Parent=MsG0480023483.01.T01
Chr4 CDS 85818415 85818632 85818415 ID=MsG0480023483.01.T01:cds;Parent=MsG0480023483.01.T01
Chr4 CDS 85818780 85818872 85818780 ID=MsG0480023483.01.T01:cds;Parent=MsG0480023483.01.T01
Chr4 CDS 85819302 85819502 85819302 ID=MsG0480023483.01.T01:cds;Parent=MsG0480023483.01.T01
Chr4 three_prime_UTR 85819503 85819708 85819503 ID=MsG0480023483.01.T01:three_prime_utr;Parent=MsG0480023483.01.T01
Gene Sequence

>MsG0480023483.01.T01

ATGTTACTATGTGTCAAACTTCTACCTAATCAGGGGGAGCCTTTATCTGATCCAGGAAGATATAGGAGATTGGTTGGAAAATTGAATTATCTCACAGTCACTCGTCCAGACATTTCCTTTGCAGTTAGTGTGGTAAGCCAATTCTTAAATTCTCCTTGCCAAGAACACATGAATGCGTTAATTCGAATTCTTAAATACATCAAAGGTGCTCCGGGAAAAGGTCTCATTTATGAGGATAAAGGACATACTCAGATAGTTGGTTACTCAGATGCTGACTGGGCAGGTTCACCCATTGATAGACGATCCACTTCTGGGTATTGTGTACTTGTTGGAGGAAACCTGATATCATGGAAGAGTAAGAAACAAAATGTAGTTGCAAGATCAAGCGCTGAGGCAGAATATAGGGCCATGGCACTAGTAACATGTGAACTCATTTGGTTGAAGCAGCTACTTAAGGAACTTCAATTCGAAGAAGCACGGCCAATGACGCTTATATGTGATAATCAAGCTGCGTTGCATATCGCCTCAAATCCAGTGTTCCATGCAAGGACCAAACATATCGAGATAGATTGCCACTTCGTCAGAGAGAAGATTGAATCTGGAGACATCATTGTAAGATTCCAAGACAAAGAGTCTCATCAAATATTTCTTGAACCGGAGGGTCGAGATGTGCCTGAGCTCTATGTGCAAGGGTTCTCAACCGGTTTGCCTGAGAGACTACAGTTGCCTTTGCTGAGAACTTTGCCTGGACTTGAAAACTGTTCCATGTTGAGGCCTGCATATGCTGTGGAATATGATTATTTACCTGCTCATCAATGCTCTAGGTCTCTTATGACTAAGAAAATACAAGGATTGTTCTTCTCGGGTCAGATAAATGGAACTACAGGCTATGAAGAAGCTGCAGCACAGGGCATTATTTCTGGTATCAACGCTGCTAGACATGCAGATGGTAAATCACTCATTGTTCTTGAGAGAGAGAGCAGTTACATAGGAACATTAATTGATGATCTAGTCACCAAGGACCTGCGAGAGCCTTACCGGATGTTAACAAGCCGCTCAGAGCATCGGTTACTTTTGAGATCTGATAATGCTGATAGCCGTCTCACTCCTTTGGGTCGTGAAATTGGATTGATAGATGATAGGCGTTGGAAATTGTACCAGGAGAAGCAGGCTCGGATTTCTGAGGAAAAGAAGCGATTGAAAAGTGTCAAAATTTCAGGAGGGGATTTGGCTGCTGAAATTACTGTTATGTCTGGTCAGCCTGTGAAAAACTCTTCAACATTGGAAAGCCTTCTTAAGAAACCGCACATACAATATGGACTTCTTGATAAGCATGGTTTTGGTGACAAGAATTTATCAAGAATGGAAAAAGAATGTGTTGAAATTGATATTAAGTACGAAGGTTTCATCTTGCGTCAGCAAAGCCAACTTCAACAGATGGTTACTCAACAACATAAACCACTTCCTGAAGACCTGGATTACTATGCAATGATAAATTTGTCTATTGAAGCTCGTGAAAAACTTTCCAAGGTTAGGCCTCAAACCATTGGTCAGGCGAGCAGAGTAGGTGGGGTGAGCCCTGCCGATATCACTGCACTACTCATTGAGCTCGAAGCCAAAAGGAGGAAAGCTCAAGGACAGAGGAGGTACAAAATGATAAATGCCATTCAAGCTAATACCCAAGATGAGGAGCCTGAAGTTTCTTTGACTGAAACAGCTAGATCTGGATAA

Protein sequence

>MsG0480023483.01.T01

MLLCVKLLPNQGEPLSDPGRYRRLVGKLNYLTVTRPDISFAVSVVSQFLNSPCQEHMNALIRILKYIKGAPGKGLIYEDKGHTQIVGYSDADWAGSPIDRRSTSGYCVLVGGNLISWKSKKQNVVARSSAEAEYRAMALVTCELIWLKQLLKELQFEEARPMTLICDNQAALHIASNPVFHARTKHIEIDCHFVREKIESGDIIVRFQDKESHQIFLEPEGRDVPELYVQGFSTGLPERLQLPLLRTLPGLENCSMLRPAYAVEYDYLPAHQCSRSLMTKKIQGLFFSGQINGTTGYEEAAAQGIISGINAARHADGKSLIVLERESSYIGTLIDDLVTKDLREPYRMLTSRSEHRLLLRSDNADSRLTPLGREIGLIDDRRWKLYQEKQARISEEKKRLKSVKISGGDLAAEITVMSGQPVKNSSTLESLLKKPHIQYGLLDKHGFGDKNLSRMEKECVEIDIKYEGFILRQQSQLQQMVTQQHKPLPEDLDYYAMINLSIEAREKLSKVRPQTIGQASRVGGVSPADITALLIELEAKRRKAQGQRRYKMINAIQANTQDEEPEVSLTETARSG*