Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380017802.01.T01 | XP_013462164.1 | 96.875 | 448 | 9 | 3 | 1 | 448 | 1 | 443 | 0 | 887 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380017802.01.T01 | Q1PFD1 | 60.377 | 265 | 96 | 6 | 173 | 431 | 19 | 280 | 9.90E-105 | 315 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380017802.01.T01 | A0A072V2D2 | 96.875 | 448 | 9 | 3 | 1 | 448 | 1 | 443 | 0.0 | 887 |
| Gene ID | Type | Classification |
|---|---|---|
| MsG0380017802.01.T01 | TF | HB-BELL |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0180004995.01 | MsG0380017802.01 | 0.804545 | 2.051921e-49 | 1.060867e-46 |
| MsG0180005835.01 | MsG0380017802.01 | 0.806088 | 9.746471e-50 | 5.243161e-47 |
| MsG0380017802.01 | MsG0580025506.01 | 0.817459 | 3.261487e-52 | 2.376696e-49 |
| MsG0380017802.01 | MsG0880041860.01 | 0.802774 | 4.782743e-49 | 2.363063e-46 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380017802.01.T01 | MTR_3g112290 | 96.875 | 448 | 9 | 3 | 1 | 448 | 1 | 443 | 0.0 | 887 |
| MsG0380017802.01.T01 | MTR_1g023050 | 50.903 | 277 | 105 | 8 | 173 | 432 | 173 | 435 | 1.95e-77 | 253 |
| MsG0380017802.01.T01 | MTR_3g112300 | 45.296 | 287 | 123 | 6 | 163 | 432 | 155 | 424 | 1.46e-70 | 232 |
| MsG0380017802.01.T01 | MTR_3g112300 | 44.558 | 294 | 129 | 6 | 163 | 439 | 155 | 431 | 5.72e-70 | 233 |
| MsG0380017802.01.T01 | MTR_4g051532 | 45.936 | 283 | 135 | 6 | 170 | 442 | 217 | 491 | 2.11e-66 | 226 |
| MsG0380017802.01.T01 | MTR_7g106320 | 46.154 | 286 | 121 | 6 | 168 | 432 | 169 | 442 | 9.43e-65 | 220 |
| MsG0380017802.01.T01 | MTR_5g018860 | 42.667 | 300 | 151 | 9 | 136 | 427 | 312 | 598 | 1.42e-64 | 221 |
| MsG0380017802.01.T01 | MTR_1g057790 | 45.418 | 251 | 129 | 4 | 169 | 414 | 160 | 407 | 2.81e-64 | 219 |
| MsG0380017802.01.T01 | MTR_8g078480 | 43.956 | 273 | 136 | 6 | 170 | 431 | 388 | 654 | 1.07e-62 | 218 |
| MsG0380017802.01.T01 | MTR_4g019450 | 40.959 | 271 | 129 | 5 | 167 | 431 | 193 | 438 | 1.46e-59 | 205 |
| MsG0380017802.01.T01 | MTR_7g065050 | 41.573 | 267 | 137 | 4 | 167 | 431 | 134 | 383 | 1.24e-57 | 198 |
| MsG0380017802.01.T01 | MTR_8g098815 | 54.098 | 183 | 74 | 5 | 239 | 416 | 255 | 432 | 6.38e-57 | 198 |
| MsG0380017802.01.T01 | MTR_2g095050 | 40.132 | 304 | 139 | 9 | 159 | 432 | 230 | 520 | 9.26e-56 | 195 |
| MsG0380017802.01.T01 | MTR_3g112300 | 41.569 | 255 | 115 | 6 | 163 | 400 | 155 | 392 | 3.72e-50 | 175 |
| MsG0380017802.01.T01 | MTR_1g016490 | 36.466 | 266 | 147 | 7 | 167 | 422 | 240 | 493 | 7.45e-40 | 150 |
| MsG0380017802.01.T01 | MTR_3g112300 | 38.462 | 234 | 110 | 6 | 163 | 379 | 155 | 371 | 1.16e-37 | 141 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380017802.01.T01 | AT1G75430 | 60.377 | 265 | 96 | 6 | 173 | 431 | 19 | 280 | 1.01e-105 | 315 |
| MsG0380017802.01.T01 | AT1G75410 | 49.265 | 272 | 126 | 4 | 162 | 429 | 159 | 422 | 1.63e-77 | 251 |
| MsG0380017802.01.T01 | AT1G75410 | 49.265 | 272 | 126 | 4 | 162 | 429 | 159 | 422 | 1.63e-77 | 251 |
| MsG0380017802.01.T01 | AT2G16400 | 47.059 | 289 | 129 | 7 | 148 | 433 | 98 | 365 | 1.30e-76 | 247 |
| MsG0380017802.01.T01 | AT1G19700 | 49.123 | 285 | 110 | 7 | 164 | 429 | 159 | 427 | 3.12e-76 | 248 |
| MsG0380017802.01.T01 | AT1G19700 | 49.123 | 285 | 110 | 7 | 164 | 429 | 159 | 427 | 3.12e-76 | 248 |
| MsG0380017802.01.T01 | AT1G19700 | 49.123 | 285 | 110 | 7 | 164 | 429 | 159 | 427 | 3.12e-76 | 248 |
| MsG0380017802.01.T01 | AT1G19700 | 49.123 | 285 | 110 | 7 | 164 | 429 | 159 | 427 | 3.12e-76 | 248 |
| MsG0380017802.01.T01 | AT1G19700 | 49.123 | 285 | 110 | 7 | 164 | 429 | 159 | 427 | 3.12e-76 | 248 |
| MsG0380017802.01.T01 | AT4G34610 | 48.175 | 274 | 119 | 7 | 170 | 437 | 140 | 396 | 3.49e-70 | 232 |
| MsG0380017802.01.T01 | AT4G34610 | 48.175 | 274 | 119 | 7 | 170 | 437 | 140 | 396 | 3.49e-70 | 232 |
| MsG0380017802.01.T01 | AT4G34610 | 48.175 | 274 | 119 | 7 | 170 | 437 | 140 | 396 | 3.49e-70 | 232 |
| MsG0380017802.01.T01 | AT4G34610 | 48.175 | 274 | 119 | 7 | 170 | 437 | 140 | 396 | 3.49e-70 | 232 |
| MsG0380017802.01.T01 | AT1G75430 | 54.460 | 213 | 88 | 6 | 173 | 379 | 19 | 228 | 3.26e-67 | 216 |
| MsG0380017802.01.T01 | AT4G36870 | 45.896 | 268 | 118 | 10 | 170 | 422 | 312 | 567 | 5.22e-61 | 211 |
| MsG0380017802.01.T01 | AT4G36870 | 45.896 | 268 | 118 | 10 | 170 | 422 | 312 | 567 | 5.22e-61 | 211 |
| MsG0380017802.01.T01 | AT2G35940 | 41.577 | 279 | 129 | 6 | 163 | 414 | 175 | 446 | 1.08e-57 | 201 |
| MsG0380017802.01.T01 | AT2G35940 | 41.577 | 279 | 129 | 6 | 163 | 414 | 175 | 446 | 1.08e-57 | 201 |
| MsG0380017802.01.T01 | AT2G35940 | 41.577 | 279 | 129 | 6 | 163 | 414 | 175 | 446 | 1.08e-57 | 201 |
| MsG0380017802.01.T01 | AT2G27220 | 42.972 | 249 | 109 | 4 | 176 | 423 | 82 | 298 | 4.69e-57 | 194 |
| MsG0380017802.01.T01 | AT2G27220 | 42.972 | 249 | 109 | 4 | 176 | 423 | 82 | 298 | 4.69e-57 | 194 |
| MsG0380017802.01.T01 | AT2G23760 | 44.238 | 269 | 120 | 8 | 170 | 421 | 237 | 492 | 6.21e-57 | 199 |
| MsG0380017802.01.T01 | AT2G23760 | 44.238 | 269 | 120 | 8 | 170 | 421 | 237 | 492 | 6.21e-57 | 199 |
| MsG0380017802.01.T01 | AT2G23760 | 44.238 | 269 | 120 | 8 | 170 | 421 | 237 | 492 | 6.21e-57 | 199 |
| MsG0380017802.01.T01 | AT5G02030 | 37.377 | 305 | 174 | 3 | 125 | 423 | 125 | 418 | 5.47e-56 | 195 |
| MsG0380017802.01.T01 | AT1G75410 | 44.444 | 243 | 123 | 4 | 162 | 400 | 159 | 393 | 2.56e-55 | 189 |
| MsG0380017802.01.T01 | AT2G27220 | 42.205 | 263 | 109 | 8 | 176 | 423 | 82 | 316 | 1.16e-54 | 189 |
| MsG0380017802.01.T01 | AT2G27990 | 40.769 | 260 | 127 | 4 | 167 | 423 | 259 | 494 | 1.91e-53 | 188 |
| MsG0380017802.01.T01 | AT5G41410 | 40.702 | 285 | 141 | 5 | 171 | 433 | 194 | 472 | 9.95e-52 | 184 |
| MsG0380017802.01.T01 | AT2G23760 | 37.072 | 321 | 120 | 9 | 170 | 421 | 237 | 544 | 2.30e-47 | 173 |
| MsG0380017802.01.T01 | AT4G36870 | 42.510 | 247 | 115 | 10 | 170 | 401 | 312 | 546 | 5.88e-45 | 164 |
| MsG0380017802.01.T01 | AT4G36870 | 42.041 | 245 | 115 | 10 | 170 | 399 | 312 | 544 | 1.13e-43 | 161 |
| MsG0380017802.01.T01 | AT4G32980 | 36.071 | 280 | 149 | 6 | 152 | 422 | 183 | 441 | 6.39e-40 | 149 |
| MsG0380017802.01.T01 | AT4G32980 | 36.071 | 280 | 149 | 6 | 152 | 422 | 183 | 441 | 6.39e-40 | 149 |
| MsG0380017802.01.T01 | AT2G27990 | 34.259 | 216 | 115 | 4 | 167 | 379 | 259 | 450 | 1.19e-27 | 115 |
Find 79 sgRNAs with CRISPR-Local
Find 143 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAGGATTCATGGACATTTAT+TGG | 0.202908 | 3:-100790231 | MsG0380017802.01.T01:CDS |
| GATCATAAGACCTTGATTTA+AGG | 0.203423 | 3:+100790625 | None:intergenic |
| CGTTCTACTTCTACTTCTTA+TGG | 0.209074 | 3:-100790440 | MsG0380017802.01.T01:CDS |
| TGAGAAAAGAAAACTGTTTC+AGG | 0.210768 | 3:-100789376 | MsG0380017802.01.T01:CDS |
| AGCATTTATTTGGGACATTA+TGG | 0.234641 | 3:+100789398 | None:intergenic |
| AGAATTGCTACAGATGTTTC+AGG | 0.303192 | 3:+100789216 | None:intergenic |
| CAAGGTCTATCCCTTTCTTT+AGG | 0.320317 | 3:-100790683 | MsG0380017802.01.T01:CDS |
| ATACTACTTCTTCCATTTGA+TGG | 0.326054 | 3:+100789517 | None:intergenic |
| TTGTACATTTCTTCTATCAT+TGG | 0.327367 | 3:+100788628 | None:intergenic |
| TGCAAAGCTCATTTCATTGT+TGG | 0.330686 | 3:-100790180 | MsG0380017802.01.T01:CDS |
| CACCACCTAGTAGTAGTTCT+TGG | 0.332157 | 3:+100790864 | None:intergenic |
| TTCAAAACCAACGACAAGTT+TGG | 0.336930 | 3:-100789257 | MsG0380017802.01.T01:CDS |
| GAAGTGACTGTACTGGTTTA+AGG | 0.338310 | 3:+100790378 | None:intergenic |
| TTACACTGCTTTGGCACTTC+AGG | 0.345280 | 3:-100789454 | MsG0380017802.01.T01:CDS |
| AGATGTCACTGTGGAGGATT+AGG | 0.348390 | 3:-100788542 | None:intergenic |
| AGCTGGCGGGTTGGAGTCTT+CGG | 0.349210 | 3:+100788585 | None:intergenic |
| ATTAACTTCTCAGAGTCATT+AGG | 0.369658 | 3:+100789060 | None:intergenic |
| GAAATGTACAAAGAAGAGTT+TGG | 0.376842 | 3:-100788616 | MsG0380017802.01.T01:CDS |
| GTTTCAGGTAACCCTCTAAT+AGG | 0.383713 | 3:+100789231 | None:intergenic |
| CTTGAAGATCTTGTTGATGT+TGG | 0.386052 | 3:-100790356 | MsG0380017802.01.T01:CDS |
| TTAATCCTGGCTTCCCAAAC+AGG | 0.402326 | 3:-100789042 | MsG0380017802.01.T01:CDS |
| GAGTCACACAAGACATTTGA+TGG | 0.404453 | 3:-100790747 | MsG0380017802.01.T01:CDS |
| TGTTGGTTCAGGTGTCAAAT+TGG | 0.407480 | 3:-100788681 | MsG0380017802.01.T01:intron |
| TTTGAAATGATAGCAGGTTT+GGG | 0.408450 | 3:-100789489 | MsG0380017802.01.T01:CDS |
| TGCAAAGTGTTACACTGCTT+TGG | 0.409703 | 3:-100789463 | MsG0380017802.01.T01:CDS |
| AAAGCAGAGTTGAGGATTCA+TGG | 0.417721 | 3:-100790242 | MsG0380017802.01.T01:CDS |
| TCTTATGGAAGTGAGAGTTT+TGG | 0.428359 | 3:-100790425 | MsG0380017802.01.T01:CDS |
| TTGTTTCATGGGAGTAGAAC+AGG | 0.428923 | 3:-100790290 | MsG0380017802.01.T01:CDS |
| CTGTAGCAATTCTTCGTGCT+TGG | 0.430609 | 3:-100789206 | MsG0380017802.01.T01:CDS |
| TTCAATGGTGGAAATGGAGG+TGG | 0.430738 | 3:-100790515 | MsG0380017802.01.T01:CDS |
| TATGCTGAGAAGTTGTTTCA+TGG | 0.434153 | 3:-100790302 | MsG0380017802.01.T01:CDS |
| GAATCCTCAACTCTGCTTTG+AGG | 0.436275 | 3:+100790246 | None:intergenic |
| TGACCAGGCATGAAGTAACT+TGG | 0.451078 | 3:+100790599 | None:intergenic |
| CAAGTTTGGAGACCTATTAG+AGG | 0.455849 | 3:-100789243 | MsG0380017802.01.T01:CDS |
| GGGATAGACCTTGTTGTGTC+TGG | 0.465614 | 3:+100790693 | None:intergenic |
| TTAAACCTGTTTGGGAAGCC+AGG | 0.480873 | 3:+100789037 | None:intergenic |
| CTTGACATAAAATTGTTAGC+TGG | 0.489551 | 3:+100788568 | None:intergenic |
| TGACTCTGAGAAGTTAATCC+TGG | 0.499019 | 3:-100789055 | MsG0380017802.01.T01:CDS |
| TTTGAATGACACCAAGTTGT+TGG | 0.503416 | 3:+100789274 | None:intergenic |
| GCTCATTTCATTGTTGGATG+AGG | 0.504055 | 3:-100790174 | MsG0380017802.01.T01:intron |
| CTTGTTAGATTCTCCACCAC+AGG | 0.504734 | 3:+100790548 | None:intergenic |
| TGAGAAGTACTACCATCAAA+TGG | 0.506912 | 3:-100789529 | MsG0380017802.01.T01:CDS |
| TCCACCACAGGTTGATTACA+AGG | 0.508130 | 3:+100790560 | None:intergenic |
| GAAGATCTTGTTGATGTTGG+TGG | 0.515827 | 3:-100790353 | MsG0380017802.01.T01:CDS |
| AACCCAAGTTACTTCATGCC+TGG | 0.516099 | 3:-100790602 | MsG0380017802.01.T01:CDS |
| TTAATGCAAGGGTACGGCTA+TGG | 0.523142 | 3:-100788654 | MsG0380017802.01.T01:CDS |
| CAAATTGGTTCATTAATGCA+AGG | 0.528439 | 3:-100788666 | MsG0380017802.01.T01:CDS |
| CATGTGAGAGCCTAAAGAAA+GGG | 0.530908 | 3:+100790673 | None:intergenic |
| ATGCTGAGAAGTTGTTTCAT+GGG | 0.532525 | 3:-100790301 | MsG0380017802.01.T01:CDS |
| TGGCACTTCAGGCAATGTCT+AGG | 0.533896 | 3:-100789443 | MsG0380017802.01.T01:CDS |
| TCTTCAAGAAGTGACTGTAC+TGG | 0.534996 | 3:+100790371 | None:intergenic |
| ACATAAAATTGTTAGCTGGC+GGG | 0.535342 | 3:+100788572 | None:intergenic |
| AGAAACCGTTCCTTAAATCA+AGG | 0.535526 | 3:-100790635 | MsG0380017802.01.T01:CDS |
| TAGGTCTCCAAACTTGTCGT+TGG | 0.537318 | 3:+100789250 | None:intergenic |
| GATGTACCTAAAATTAATAG+TGG | 0.538946 | 3:-100789354 | MsG0380017802.01.T01:CDS |
| GCATGTGAGAGCCTAAAGAA+AGG | 0.546878 | 3:+100790672 | None:intergenic |
| TAAGACCTTGATTTAAGGAA+CGG | 0.549373 | 3:+100790630 | None:intergenic |
| AGACATTTGATGGATCTACT+TGG | 0.551807 | 3:-100790737 | MsG0380017802.01.T01:CDS |
| AAAATTGTTAGCTGGCGGGT+TGG | 0.557706 | 3:+100788576 | None:intergenic |
| AGAATGTCTCTCCAACAACT+TGG | 0.557966 | 3:-100789285 | MsG0380017802.01.T01:CDS |
| GACCAGGCATGAAGTAACTT+GGG | 0.566873 | 3:+100790600 | None:intergenic |
| GAGAACCAAGAACTACTACT+AGG | 0.567546 | 3:-100790869 | MsG0380017802.01.T01:CDS |
| GGTTCATTAATGCAAGGGTA+CGG | 0.572871 | 3:-100788660 | MsG0380017802.01.T01:CDS |
| AAATTGGTTCATTAATGCAA+GGG | 0.576729 | 3:-100788665 | MsG0380017802.01.T01:CDS |
| GACATAAAATTGTTAGCTGG+CGG | 0.577181 | 3:+100788571 | None:intergenic |
| AAGTTTGGAGACCTATTAGA+GGG | 0.581283 | 3:-100789242 | MsG0380017802.01.T01:CDS |
| TCACGTGTCTGATCTTGACC+AGG | 0.591778 | 3:+100790584 | None:intergenic |
| CAACTCTGCTTTGAGGTCAG+AGG | 0.594657 | 3:+100790253 | None:intergenic |
| CATAAGAAGTAGAAGTAGAA+CGG | 0.599560 | 3:+100790441 | None:intergenic |
| AATGCATATCATGAATCACT+TGG | 0.609154 | 3:-100790812 | MsG0380017802.01.T01:CDS |
| AACAATATTGGACTAGCACA+AGG | 0.612707 | 3:-100790779 | MsG0380017802.01.T01:CDS |
| GCCTTGTAATCAACCTGTGG+TGG | 0.623528 | 3:-100790561 | MsG0380017802.01.T01:CDS |
| AATAATCACCAGACACAACA+AGG | 0.630483 | 3:-100790701 | MsG0380017802.01.T01:CDS |
| AAGGGAAGATGTCACTGTGG+AGG | 0.641601 | 3:-100788548 | MsG0380017802.01.T01:CDS |
| CAAGAACTACTACTAGGTGG+TGG | 0.646214 | 3:-100790863 | MsG0380017802.01.T01:CDS |
| CTGACCTCAAAGCAGAGTTG+AGG | 0.668038 | 3:-100790250 | MsG0380017802.01.T01:CDS |
| AACCAAGAACTACTACTAGG+TGG | 0.711092 | 3:-100790866 | MsG0380017802.01.T01:CDS |
| TGAGCCTTGTAATCAACCTG+TGG | 0.732645 | 3:-100790564 | MsG0380017802.01.T01:CDS |
| GTCAAGGGAAGATGTCACTG+TGG | 0.757361 | 3:-100788551 | MsG0380017802.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAGTAATTCATTTTTTTTC+CGG | - | Chr3:100790783-100790802 | MsG0380017802.01.T01:CDS | 15.0% |
| !!! | AATCAAAAATCAAATTGTTT+TGG | - | Chr3:100789515-100789534 | MsG0380017802.01.T01:CDS | 15.0% |
| !! | AAAAAGAAAAACAAATTGAG+AGG | - | Chr3:100789729-100789748 | MsG0380017802.01.T01:intron | 20.0% |
| !! | AGCTAAATTAACATATCATT+AGG | + | Chr3:100790556-100790575 | None:intergenic | 20.0% |
| !! | ATTAATGAAATGCTAATTTG+AGG | - | Chr3:100790419-100790438 | MsG0380017802.01.T01:CDS | 20.0% |
| !! | TTAACATATCATTAGGAAAA+AGG | + | Chr3:100790549-100790568 | None:intergenic | 20.0% |
| !!! | ACAAGTGATTATTTTTTCAA+TGG | - | Chr3:100788990-100789009 | MsG0380017802.01.T01:intron | 20.0% |
| !!! | AGAATTTTGATATAAGCTTA+CGG | + | Chr3:100790361-100790380 | None:intergenic | 20.0% |
| !!! | GTGAATTTCATATACTTTTA+AGG | - | Chr3:100790716-100790735 | MsG0380017802.01.T01:CDS | 20.0% |
| !!! | TAAAAGTATATGAAATTCAC+CGG | + | Chr3:100790716-100790735 | None:intergenic | 20.0% |
| !!! | TCTTTCACTTTATCTTTTAT+GGG | - | Chr3:100790642-100790661 | MsG0380017802.01.T01:CDS | 20.0% |
| !!! | TTCTTTCACTTTATCTTTTA+TGG | - | Chr3:100790641-100790660 | MsG0380017802.01.T01:CDS | 20.0% |
| ! | AAGTTCATTAGAATAAGTGT+AGG | - | Chr3:100789773-100789792 | MsG0380017802.01.T01:intron | 25.0% |
| ! | AGCTATCTTAGAGAATTTAT+AGG | - | Chr3:100789590-100789609 | MsG0380017802.01.T01:intron | 25.0% |
| ! | ATATAAGTGTTAGATATGCT+TGG | + | Chr3:100789893-100789912 | None:intergenic | 25.0% |
| ! | ATATCATTAGGAAAAAGGAA+AGG | + | Chr3:100790544-100790563 | None:intergenic | 25.0% |
| ! | GATGTACCTAAAATTAATAG+TGG | - | Chr3:100790166-100790185 | MsG0380017802.01.T01:intron | 25.0% |
| ! | TAGCATTTCATTAATAAGAC+AGG | + | Chr3:100790414-100790433 | None:intergenic | 25.0% |
| ! | TATAAGTGTTAGATATGCTT+GGG | + | Chr3:100789892-100789911 | None:intergenic | 25.0% |
| ! | TATCATTAGGAAAAAGGAAA+GGG | + | Chr3:100790543-100790562 | None:intergenic | 25.0% |
| ! | TTGTACATTTCTTCTATCAT+TGG | + | Chr3:100790895-100790914 | None:intergenic | 25.0% |
| !! | AAAGTTGGTTAGTAATTAGT+TGG | + | Chr3:100789849-100789868 | None:intergenic | 25.0% |
| !! | AAATTGGTTCATTAATGCAA+GGG | - | Chr3:100790855-100790874 | MsG0380017802.01.T01:CDS | 25.0% |
| !! | AAGTTGGTTAGTAATTAGTT+GGG | + | Chr3:100789848-100789867 | None:intergenic | 25.0% |
| !! | AGCTAACAATTTTATGTCAA+GGG | - | Chr3:100790954-100790973 | MsG0380017802.01.T01:five_prime_UTR | 25.0% |
| !! | AGGAAAATGTCAAATAGTTT+TGG | - | Chr3:100789610-100789629 | MsG0380017802.01.T01:intron | 25.0% |
| !! | GACAATCCACTATTAATTTT+AGG | + | Chr3:100790175-100790194 | None:intergenic | 25.0% |
| !! | GGAACATTTTCTAACAATAT+TGG | - | Chr3:100788729-100788748 | MsG0380017802.01.T01:intron | 25.0% |
| !! | TCTTTTCTCAGCATTTATTT+GGG | + | Chr3:100790134-100790153 | None:intergenic | 25.0% |
| !! | TTCTTTTCTCAGCATTTATT+TGG | + | Chr3:100790135-100790154 | None:intergenic | 25.0% |
| !!! | AGTGATTATTTTTTCAATGG+TGG | - | Chr3:100788993-100789012 | MsG0380017802.01.T01:intron | 25.0% |
| !!! | ATTTGTTGTGCTTAATTTTC+AGG | - | Chr3:100789955-100789974 | MsG0380017802.01.T01:intron | 25.0% |
| !!! | GTTCTCAAATTGATTTTGAT+GGG | + | Chr3:100788637-100788656 | None:intergenic | 25.0% |
| !!! | TATTTTTTCAATGGTGGAAA+TGG | - | Chr3:100788999-100789018 | MsG0380017802.01.T01:intron | 25.0% |
| !!! | TCATATTTTGAAATGATAGC+AGG | - | Chr3:100790025-100790044 | MsG0380017802.01.T01:intron | 25.0% |
| AATAATAAGCACTTGTGAGA+CGG | + | Chr3:100789687-100789706 | None:intergenic | 30.0% | |
| AATGCATATCATGAATCACT+TGG | - | Chr3:100788708-100788727 | MsG0380017802.01.T01:intron | 30.0% | |
| ATACTACTTCTTCCATTTGA+TGG | + | Chr3:100790006-100790025 | None:intergenic | 30.0% | |
| ATCACCATCATAAATAACTC+CGG | + | Chr3:100790805-100790824 | None:intergenic | 30.0% | |
| ATCATTAGGAAAAAGGAAAG+GGG | + | Chr3:100790542-100790561 | None:intergenic | 30.0% | |
| ATTAACTTCTCAGAGTCATT+AGG | + | Chr3:100790463-100790482 | None:intergenic | 30.0% | |
| CATAAGAAGTAGAAGTAGAA+CGG | + | Chr3:100789082-100789101 | None:intergenic | 30.0% | |
| CTTGACATAAAATTGTTAGC+TGG | + | Chr3:100790955-100790974 | None:intergenic | 30.0% | |
| GAAATGTACAAAGAAGAGTT+TGG | - | Chr3:100790904-100790923 | MsG0380017802.01.T01:CDS | 30.0% | |
| GATCATAAGACCTTGATTTA+AGG | + | Chr3:100788898-100788917 | None:intergenic | 30.0% | |
| GATGTTAATGTATTGAGTGT+TGG | - | Chr3:100790822-100790841 | MsG0380017802.01.T01:CDS | 30.0% | |
| GTGCTTATTATTGAGAAACA+TGG | - | Chr3:100789695-100789714 | MsG0380017802.01.T01:intron | 30.0% | |
| TAAGACCTTGATTTAAGGAA+CGG | + | Chr3:100788893-100788912 | None:intergenic | 30.0% | |
| TGAGAAAAGAAAACTGTTTC+AGG | - | Chr3:100790144-100790163 | MsG0380017802.01.T01:intron | 30.0% | |
| ! | AGCATTTATTTGGGACATTA+TGG | + | Chr3:100790125-100790144 | None:intergenic | 30.0% |
| ! | CAAATTGGTTCATTAATGCA+AGG | - | Chr3:100790854-100790873 | MsG0380017802.01.T01:CDS | 30.0% |
| ! | CAGCTAACAATTTTATGTCA+AGG | - | Chr3:100790953-100790972 | MsG0380017802.01.T01:five_prime_UTR | 30.0% |
| ! | TCACTTTATCTTTTATGGGT+AGG | - | Chr3:100790646-100790665 | MsG0380017802.01.T01:CDS | 30.0% |
| ! | TTTGAAATGATAGCAGGTTT+GGG | - | Chr3:100790031-100790050 | MsG0380017802.01.T01:intron | 30.0% |
| ! | TTTTCCGGAGTTATTTATGA+TGG | - | Chr3:100790798-100790817 | MsG0380017802.01.T01:CDS | 30.0% |
| ! | TTTTTGGATAAGGGATTACT+TGG | + | Chr3:100790516-100790535 | None:intergenic | 30.0% |
| !! | AAATTGATTTTGATGGGTCA+TGG | + | Chr3:100788631-100788650 | None:intergenic | 30.0% |
| !! | ATAAGGGATTACTTGGTTTT+TGG | + | Chr3:100790509-100790528 | None:intergenic | 30.0% |
| !! | GGTTCTCAAATTGATTTTGA+TGG | + | Chr3:100788638-100788657 | None:intergenic | 30.0% |
| !! | GTTAAAGGTACTTACAAAGT+TGG | + | Chr3:100789864-100789883 | None:intergenic | 30.0% |
| !!! | AGAGTTTTGGTTCTGTTATT+GGG | - | Chr3:100789108-100789127 | MsG0380017802.01.T01:intron | 30.0% |
| !!! | GTTTTTGGTTAAACCTGTTT+GGG | + | Chr3:100790494-100790513 | None:intergenic | 30.0% |
| !!! | TTTTGAAATGATAGCAGGTT+TGG | - | Chr3:100790030-100790049 | MsG0380017802.01.T01:intron | 30.0% |
| AAGTTTGGAGACCTATTAGA+GGG | - | Chr3:100790278-100790297 | MsG0380017802.01.T01:CDS | 35.0% | |
| AATAATCACCAGACACAACA+AGG | - | Chr3:100788819-100788838 | MsG0380017802.01.T01:intron | 35.0% | |
| ACATAAAATTGTTAGCTGGC+GGG | + | Chr3:100790951-100790970 | None:intergenic | 35.0% | |
| AGAAACCGTTCCTTAAATCA+AGG | - | Chr3:100788885-100788904 | MsG0380017802.01.T01:intron | 35.0% | |
| AGAATTGCTACAGATGTTTC+AGG | + | Chr3:100790307-100790326 | None:intergenic | 35.0% | |
| ATTTCATTGTTGGATGAGGT+TGG | - | Chr3:100789350-100789369 | MsG0380017802.01.T01:CDS | 35.0% | |
| CAACAGTCACATACATTAAC+CGG | - | Chr3:100790694-100790713 | MsG0380017802.01.T01:CDS | 35.0% | |
| CGTTCTACTTCTACTTCTTA+TGG | - | Chr3:100789080-100789099 | MsG0380017802.01.T01:intron | 35.0% | |
| CTTGAAGATCTTGTTGATGT+TGG | - | Chr3:100789164-100789183 | MsG0380017802.01.T01:intron | 35.0% | |
| GACATAAAATTGTTAGCTGG+CGG | + | Chr3:100790952-100790971 | None:intergenic | 35.0% | |
| GAGGATTCATGGACATTTAT+TGG | - | Chr3:100789289-100789308 | MsG0380017802.01.T01:CDS | 35.0% | |
| TGCAAAGCTCATTTCATTGT+TGG | - | Chr3:100789340-100789359 | MsG0380017802.01.T01:CDS | 35.0% | |
| TTATGGGTAGGAATCAAGTT+AGG | - | Chr3:100790658-100790677 | MsG0380017802.01.T01:CDS | 35.0% | |
| TTCAAAACCAACGACAAGTT+TGG | - | Chr3:100790263-100790282 | MsG0380017802.01.T01:CDS | 35.0% | |
| TTTGAATGACACCAAGTTGT+TGG | + | Chr3:100790249-100790268 | None:intergenic | 35.0% | |
| ! | AAAAGGAAAGGGGTAGTTTT+TGG | + | Chr3:100790532-100790551 | None:intergenic | 35.0% |
| ! | ACACTGCAAACATTAACTTG+AGG | - | Chr3:100790749-100790768 | MsG0380017802.01.T01:CDS | 35.0% |
| ! | AGACATTTGATGGATCTACT+TGG | - | Chr3:100788783-100788802 | MsG0380017802.01.T01:intron | 35.0% |
| ! | ATGCTGAGAAGTTGTTTCAT+GGG | - | Chr3:100789219-100789238 | MsG0380017802.01.T01:CDS | 35.0% |
| ! | CACTGCAAACATTAACTTGA+GGG | - | Chr3:100790750-100790769 | MsG0380017802.01.T01:CDS | 35.0% |
| ! | TATGCTGAGAAGTTGTTTCA+TGG | - | Chr3:100789218-100789237 | MsG0380017802.01.T01:CDS | 35.0% |
| ! | TCTTATGGAAGTGAGAGTTT+TGG | - | Chr3:100789095-100789114 | MsG0380017802.01.T01:intron | 35.0% |
| !! | AAAGGGGTAGTTTTTGGATA+AGG | + | Chr3:100790526-100790545 | None:intergenic | 35.0% |
| !! | AACAATATTGGACTAGCACA+AGG | - | Chr3:100788741-100788760 | MsG0380017802.01.T01:intron | 35.0% |
| !! | AAGGGGTAGTTTTTGGATAA+GGG | + | Chr3:100790525-100790544 | None:intergenic | 35.0% |
| !! | AATGTATTGAGTGTTGGTTC+AGG | - | Chr3:100790828-100790847 | MsG0380017802.01.T01:CDS | 35.0% |
| !! | TATGCTTGGGAGTTTGTTAA+AGG | + | Chr3:100789879-100789898 | None:intergenic | 35.0% |
| !! | TGAGAAGTACTACCATCAAA+TGG | - | Chr3:100789991-100790010 | MsG0380017802.01.T01:intron | 35.0% |
| !! | TTTTTCAATGGTGGAAATGG+AGG | - | Chr3:100789002-100789021 | MsG0380017802.01.T01:intron | 35.0% |
| !!! | GAGAGTTTTGGTTCTGTTAT+TGG | - | Chr3:100789107-100789126 | MsG0380017802.01.T01:intron | 35.0% |
| !!! | GGTTTTTGGTTAAACCTGTT+TGG | + | Chr3:100790495-100790514 | None:intergenic | 35.0% |
| !!! | GTGCTTAATTTTCAGGTTGA+GGG | - | Chr3:100789962-100789981 | MsG0380017802.01.T01:intron | 35.0% |
| !!! | TGTGCTTAATTTTCAGGTTG+AGG | - | Chr3:100789961-100789980 | MsG0380017802.01.T01:intron | 35.0% |
| AAAGCAGAGTTGAGGATTCA+TGG | - | Chr3:100789278-100789297 | MsG0380017802.01.T01:CDS | 40.0% | |
| AACCAAGAACTACTACTAGG+TGG | - | Chr3:100788654-100788673 | MsG0380017802.01.T01:CDS | 40.0% | |
| AGAATGTCTCTCCAACAACT+TGG | - | Chr3:100790235-100790254 | MsG0380017802.01.T01:CDS | 40.0% | |
| CAAGGTCTATCCCTTTCTTT+AGG | - | Chr3:100788837-100788856 | MsG0380017802.01.T01:intron | 40.0% | |
| CAAGTTTGGAGACCTATTAG+AGG | - | Chr3:100790277-100790296 | MsG0380017802.01.T01:CDS | 40.0% | |
| CATGTGAGAGCCTAAAGAAA+GGG | + | Chr3:100788850-100788869 | None:intergenic | 40.0% | |
| GAAGATCTTGTTGATGTTGG+TGG | - | Chr3:100789167-100789186 | MsG0380017802.01.T01:intron | 40.0% | |
| GAGAACCAAGAACTACTACT+AGG | - | Chr3:100788651-100788670 | MsG0380017802.01.T01:CDS | 40.0% | |
| GAGTCACACAAGACATTTGA+TGG | - | Chr3:100788773-100788792 | MsG0380017802.01.T01:intron | 40.0% | |
| GCTCATTTCATTGTTGGATG+AGG | - | Chr3:100789346-100789365 | MsG0380017802.01.T01:CDS | 40.0% | |
| GGTTCATTAATGCAAGGGTA+CGG | - | Chr3:100790860-100790879 | MsG0380017802.01.T01:CDS | 40.0% | |
| TCTTCAAGAAGTGACTGTAC+TGG | + | Chr3:100789152-100789171 | None:intergenic | 40.0% | |
| TTGTTTCATGGGAGTAGAAC+AGG | - | Chr3:100789230-100789249 | MsG0380017802.01.T01:CDS | 40.0% | |
| ! | GTTTCAGGTAACCCTCTAAT+AGG | + | Chr3:100790292-100790311 | None:intergenic | 40.0% |
| ! | TGACTCTGAGAAGTTAATCC+TGG | - | Chr3:100790465-100790484 | MsG0380017802.01.T01:CDS | 40.0% |
| ! | TGCAAAGTGTTACACTGCTT+TGG | - | Chr3:100790057-100790076 | MsG0380017802.01.T01:intron | 40.0% |
| !! | GAAGTGACTGTACTGGTTTA+AGG | + | Chr3:100789145-100789164 | None:intergenic | 40.0% |
| !! | TGTTGGTTCAGGTGTCAAAT+TGG | - | Chr3:100790839-100790858 | MsG0380017802.01.T01:CDS | 40.0% |
| AACCCAAGTTACTTCATGCC+TGG | - | Chr3:100788918-100788937 | MsG0380017802.01.T01:intron | 45.0% | |
| CAAGAACTACTACTAGGTGG+TGG | - | Chr3:100788657-100788676 | MsG0380017802.01.T01:CDS | 45.0% | |
| CACCACCTAGTAGTAGTTCT+TGG | + | Chr3:100788659-100788678 | None:intergenic | 45.0% | |
| CTGTAGCAATTCTTCGTGCT+TGG | - | Chr3:100790314-100790333 | MsG0380017802.01.T01:CDS | 45.0% | |
| CTTGTTAGATTCTCCACCAC+AGG | + | Chr3:100788975-100788994 | None:intergenic | 45.0% | |
| GAATCCTCAACTCTGCTTTG+AGG | + | Chr3:100789277-100789296 | None:intergenic | 45.0% | |
| GACCAGGCATGAAGTAACTT+GGG | + | Chr3:100788923-100788942 | None:intergenic | 45.0% | |
| GCATGTGAGAGCCTAAAGAA+AGG | + | Chr3:100788851-100788870 | None:intergenic | 45.0% | |
| TAGGTCTCCAAACTTGTCGT+TGG | + | Chr3:100790273-100790292 | None:intergenic | 45.0% | |
| TGACCAGGCATGAAGTAACT+TGG | + | Chr3:100788924-100788943 | None:intergenic | 45.0% | |
| TTAAACCTGTTTGGGAAGCC+AGG | + | Chr3:100790486-100790505 | None:intergenic | 45.0% | |
| TTAATCCTGGCTTCCCAAAC+AGG | - | Chr3:100790478-100790497 | MsG0380017802.01.T01:CDS | 45.0% | |
| TTACACTGCTTTGGCACTTC+AGG | - | Chr3:100790066-100790085 | MsG0380017802.01.T01:intron | 45.0% | |
| ! | AAAATTGTTAGCTGGCGGGT+TGG | + | Chr3:100790947-100790966 | None:intergenic | 45.0% |
| ! | AAGCACTTGTGAGACGGATT+AGG | + | Chr3:100789681-100789700 | None:intergenic | 45.0% |
| ! | TGAGCCTTGTAATCAACCTG+TGG | - | Chr3:100788956-100788975 | MsG0380017802.01.T01:intron | 45.0% |
| ! | TTAATGCAAGGGTACGGCTA+TGG | - | Chr3:100790866-100790885 | MsG0380017802.01.T01:CDS | 45.0% |
| ! | TTCAATGGTGGAAATGGAGG+TGG | - | Chr3:100789005-100789024 | MsG0380017802.01.T01:intron | 45.0% |
| !! | TCCACCACAGGTTGATTACA+AGG | + | Chr3:100788963-100788982 | None:intergenic | 45.0% |
| AAGGGAAGATGTCACTGTGG+AGG | - | Chr3:100790972-100790991 | MsG0380017802.01.T01:five_prime_UTR | 50.0% | |
| CTGACCTCAAAGCAGAGTTG+AGG | - | Chr3:100789270-100789289 | MsG0380017802.01.T01:CDS | 50.0% | |
| GCCTTGTAATCAACCTGTGG+TGG | - | Chr3:100788959-100788978 | MsG0380017802.01.T01:intron | 50.0% | |
| GTCAAGGGAAGATGTCACTG+TGG | - | Chr3:100790969-100790988 | MsG0380017802.01.T01:five_prime_UTR | 50.0% | |
| TCACGTGTCTGATCTTGACC+AGG | + | Chr3:100788939-100788958 | None:intergenic | 50.0% | |
| TGGCACTTCAGGCAATGTCT+AGG | - | Chr3:100790077-100790096 | MsG0380017802.01.T01:intron | 50.0% | |
| ! | GGAGGTGGAACTTTTGCTTC+AGG | - | Chr3:100789020-100789039 | MsG0380017802.01.T01:intron | 50.0% |
| ! | GGGATAGACCTTGTTGTGTC+TGG | + | Chr3:100788830-100788849 | None:intergenic | 50.0% |
| !! | CAACTCTGCTTTGAGGTCAG+AGG | + | Chr3:100789270-100789289 | None:intergenic | 50.0% |
| !! | AGCTGGCGGGTTGGAGTCTT+CGG | + | Chr3:100790938-100790957 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr3 | gene | 100788543 | 100790999 | 100788543 | ID=MsG0380017802.01;Name=MsG0380017802.01 |
| Chr3 | mRNA | 100788543 | 100790999 | 100788543 | ID=MsG0380017802.01.T01;Parent=MsG0380017802.01;Name=MsG0380017802.01.T01;_AED=0.46;_eAED=0.46;_QI=72|0.66|0.5|1|1|1|4|0|448 |
| Chr3 | exon | 100788543 | 100788692 | 100788543 | ID=MsG0380017802.01.T01:exon:35883;Parent=MsG0380017802.01.T01 |
| Chr3 | exon | 100789026 | 100789086 | 100789026 | ID=MsG0380017802.01.T01:exon:35882;Parent=MsG0380017802.01.T01 |
| Chr3 | exon | 100789183 | 100789565 | 100789183 | ID=MsG0380017802.01.T01:exon:35881;Parent=MsG0380017802.01.T01 |
| Chr3 | exon | 100790175 | 100790999 | 100790175 | ID=MsG0380017802.01.T01:exon:35880;Parent=MsG0380017802.01.T01 |
| Chr3 | five_prime_UTR | 100790928 | 100790999 | 100790928 | ID=MsG0380017802.01.T01:five_prime_utr;Parent=MsG0380017802.01.T01 |
| Chr3 | CDS | 100790175 | 100790927 | 100790175 | ID=MsG0380017802.01.T01:cds;Parent=MsG0380017802.01.T01 |
| Chr3 | CDS | 100789183 | 100789565 | 100789183 | ID=MsG0380017802.01.T01:cds;Parent=MsG0380017802.01.T01 |
| Chr3 | CDS | 100789026 | 100789086 | 100789026 | ID=MsG0380017802.01.T01:cds;Parent=MsG0380017802.01.T01 |
| Chr3 | CDS | 100788543 | 100788692 | 100788543 | ID=MsG0380017802.01.T01:cds;Parent=MsG0380017802.01.T01 |
| Gene Sequence |
| Protein sequence |
