AlfalfaGEDB | MsG0880041860.01

M. sativa cultivar ZhongmuNo.1 / MsG0880041860.01

KEGG: -
GO: -
PFAM: PF03140

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880041860.01.T01	XP_013443756.1	94.978	458	23	0	115	572	1	458	0	890

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880041860.01.T01	Q9SD53	28.315	445	264	13	132	556	37	446	3.34E-37	147

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880041860.01.T01	A0A072TKP8	94.978	458	23	0	115	572	1	458	0.0	890

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080047814.01	MsG0880041860.01	0.856565	2.951489e-62	7.074842e-59
MsG0080047974.01	MsG0880041860.01	0.812324	4.490596e-51	2.846486e-48
MsG0080048113.01	MsG0880041860.01	0.807376	5.210765e-50	2.897598e-47
MsG0080048700.01	MsG0880041860.01	0.833374	5.533493e-56	6.360551e-53
MsG0080048701.01	MsG0880041860.01	0.816299	5.939948e-52	4.193244e-49
MsG0080048829.01	MsG0880041860.01	0.809065	2.275130e-50	1.322556e-47
MsG0080048856.01	MsG0880041860.01	0.838261	3.195126e-57	4.256008e-54
MsG0080048952.01	MsG0880041860.01	0.859904	2.994474e-63	8.036786e-60
MsG0080049014.01	MsG0880041860.01	0.827473	1.534851e-54	1.483288e-51
MsG0080049058.01	MsG0880041860.01	0.814601	1.417518e-51	9.553597e-49

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PPI

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Gene1	Gene2	Type
MsG0880041860.01	MsG0880041863.01	PPI
MsG0880041860.01	MsG0880041858.01	PPI
MsG0880041860.01	MsG0880041857.01	PPI
MsG0880041860.01	MsG0880041868.01	PPI
MsG0880041861.01	MsG0880041860.01	PPI
MsG0880041868.01	MsG0880041860.01	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880041860.01.T01	MTR_8g005265	94.978	458	23	0	115	572	1	458	0.0	890
MsG0880041860.01.T01	MTR_4g112660	73.016	441	37	5	136	572	1	363	0.0	620
MsG0880041860.01.T01	MTR_8g005225	60.566	459	162	10	118	569	13	459	0.0	532
MsG0880041860.01.T01	MTR_8g005325	53.215	451	192	6	122	568	37	472	4.14e-157	458
MsG0880041860.01.T01	MTR_8g005235	50.873	458	205	7	115	568	1	442	1.33e-155	453
MsG0880041860.01.T01	MTR_0209s0060	47.865	445	198	10	123	563	11	425	1.62e-131	391
MsG0880041860.01.T01	MTR_0209s0030	47.865	445	198	10	123	563	11	425	1.62e-131	391
MsG0880041860.01.T01	MTR_8g005295	43.922	510	206	12	123	569	19	511	4.04e-130	390
MsG0880041860.01.T01	MTR_8g006525	48.993	447	194	11	122	563	9	426	6.94e-130	387
MsG0880041860.01.T01	MTR_8g005285	45.233	493	210	13	123	569	19	497	3.35e-128	385

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880041860.01.T01	AT2G28580	30.455	440	251	11	139	560	39	441	2.43e-53	189
MsG0880041860.01.T01	AT2G28580	30.455	440	251	11	139	560	107	509	1.82e-52	188
MsG0880041860.01.T01	AT2G28580	30.269	446	256	11	139	566	121	529	2.10e-52	188
MsG0880041860.01.T01	AT4G31980	30.896	424	234	13	137	551	289	662	9.71e-51	186
MsG0880041860.01.T01	AT2G28580	29.698	431	249	10	139	560	107	492	1.39e-50	182
MsG0880041860.01.T01	AT2G28580	29.519	437	254	10	139	566	121	512	1.57e-50	182
MsG0880041860.01.T01	AT2G36430	31.144	411	239	15	141	543	45	419	7.82e-50	179
MsG0880041860.01.T01	AT2G44930	29.047	451	250	13	139	561	82	490	1.09e-49	180
MsG0880041860.01.T01	AT3G50120	27.434	452	269	11	134	558	96	515	1.55e-43	163
MsG0880041860.01.T01	AT3G50170	25.758	528	319	13	66	558	34	523	2.70e-43	162

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Find 63 sgRNAs with CRISPR-Local

Find 383 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATAAACAAACTTTAGCTT+TGG	0.384668	8:+359949	MsG0880041860.01.T01:CDS
AAATCAGTGAAATGGTTGCA+AGG	0.586489	8:-360382	None:intergenic
AACATAGGCTCAATGATTTC+TGG	0.230505	8:-359758	None:intergenic
AACATTATATGGGAATGTTA+AGG	0.469604	8:+360953	MsG0880041860.01.T01:CDS
AACTGGTGGAAACATTATAT+GGG	0.515685	8:+360943	MsG0880041860.01.T01:CDS
AAGAGAAATTTGTGTTACTA+TGG	0.254918	8:+359694	MsG0880041860.01.T01:CDS
AAGCAACAGAATGTGTTCTT+AGG	0.348136	8:+360674	MsG0880041860.01.T01:CDS
AATCAACAATTAGATATGCC+TGG	0.506412	8:+354066	None:intergenic
AATTAAGACTCTTCAAGAAA+AGG	0.498314	8:+354106	MsG0880041860.01.T01:CDS
AATTCCTCCAAAACAAACAT+AGG	0.529945	8:-360208	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAATGCTACCCAAAAATTTC+TGG	-	Chr8:356368-356387	None:intergenic	30.0%
AACTGGTGGAAACATTATAT+GGG	+	Chr8:360943-360962	MsG0880041860.01.T01:CDS	30.0%
AAGTCCCATATAAAATGGAT+CGG	+	Chr8:357504-357523	MsG0880041860.01.T01:intron	30.0%
AATTCCTCCAAAACAAACAT+AGG	-	Chr8:360211-360230	None:intergenic	30.0%
ACACCAAAGTTTATCTCAAT+TGG	+	Chr8:359845-359864	MsG0880041860.01.T01:CDS	30.0%
AGCTTCCCAAATTCAAATAT+CGG	-	Chr8:358556-358575	None:intergenic	30.0%
AGTACATATTCTGGTCTAAA+AGG	-	Chr8:360475-360494	None:intergenic	30.0%
ATAACACATCGATGATATAG+AGG	-	Chr8:356526-356545	None:intergenic	30.0%
ATACCCATGTAAAACTCAAA+TGG	+	Chr8:355521-355540	MsG0880041860.01.T01:intron	30.0%
ATATATTATTGGTGCAACGA+AGG	-	Chr8:355769-355788	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr8	gene	354081	361089	354081	ID=MsG0880041860.01;Name=MsG0880041860.01
Chr8	mRNA	354081	361089	354081	ID=MsG0880041860.01.T01;Parent=MsG0880041860.01;Name=MsG0880041860.01.T01;_AED=0.57;_eAED=0.58;_QI=0\|0\|0\|0.5\|1\|1\|2\|0\|572
Chr8	exon	354081	354392	354081	ID=MsG0880041860.01.T01:exon:253;Parent=MsG0880041860.01.T01
Chr8	exon	359683	361089	359683	ID=MsG0880041860.01.T01:exon:252;Parent=MsG0880041860.01.T01
Chr8	CDS	354081	354392	354081	ID=MsG0880041860.01.T01:cds;Parent=MsG0880041860.01.T01
Chr8	CDS	359683	361089	359683	ID=MsG0880041860.01.T01:cds;Parent=MsG0880041860.01.T01

Gene Sequence

>MsG0880041860.01.T01

ATGCCTGGATTAGATCTTATAACAGAATTAAGACTCTTCAAGAAAAGGCTAGAAGACATAGTCTATGAAATAGAATTGTATTATGAAAGAATTGTTTTTAAACAAATTCTTTACAATTCTAGAGAATTTGTTATATATCATATAGAATATATTGAAGATCTATTAAGAGATACAGAAGATTTAGAAAATCTTACTCAGATACAAAAACAAAGAGCTAAAACACTCTTAAAACCTTTTCAAGGATTATTTAAAATCGAACAAATGTTAAAAGAAGTTCGAGAAAATTCTGCAGAAAACCCCACATCAAACCTGGTAAAAAAAGGAAGAGAAATTTGTGTTACTATGGGTTCTGAAACTATACCACAGATTCAGCACATAATCAACATTCCAGAAATCATTGAGCCTATGTTACATGAAAAATGTTGCATTTACAAGGTTCCTCACCATCTCTTGAAGTTGAATGAAGATGCTTTTACACCAAAGTTTATCTCAATTGGTCCTTTTCATAGTCAGAATCCAGAACTTAATCAAGAGAAACAGAAACAAAGGTACTTTCATGCTTTTTGGAAACGTTTATCAAATAAACAAACTTTAGCTTTGGTACAATATAAAGCTTTTCTTGAAGAAAACAGAGAAAATATTGCTAATTGTTATTCCAAACAAGAACTTTGCCAGGATGAGAAGTTTTTGGAAATGATTTTGTTAGACTCAGTTTTCATAATGGAGTTGTTTTTGAGAAAAGTTAATGAATCTGAACAGAAAAATGATTTCATGTTTACAACATCATGGATTTACAAAATGACACAAAGGGATTTGTTGCTGCTTGAAAATCAAATTCCTATGTTTGTTTTGGAGGAATTACACAGAGGGGTGTTATTAGCTGAAAAGAATGGTTGCAATAGCAATAAGGAAAATTCTGCTAGTTTTATTGATCTTGCTTTTAACTACTTTGAAGATTATTATCCTCAAAAGTTAACAAGTCAAAAATTGGAGTTGACTCAAAATTGCAAACCTTGCAACCATTTCACTGATTTGATTAGATATACTTATCTTCCAAGAGAAATTCAAGTAAAGGGTGTGAATCCATCAAAAAGTTTCACACCTTTTAGACCAGAATATGTACTAAGAACAGCTACAAAGTTGAGTGAAGCAGGTATTAGTTTCGAGAAAGTTCAAGGTAAAAGCTATTGTGACTTAAAGTTTAAGAAGACGCCGATTTTGAGCTGGTTTTTGTGCTTAGGTTGTGTACCATGTTTTAAATTTGTCGAATCTAAGTTACAAATCCCGCATTTGAATGTAGACCAAGCAACAGAATGTGTTCTTAGGAACCTAATCGCGTTCGAACAATGTCACTATTCAGACCAACCTTTCATATGCAACTATGTTTCTTTAATTGATTCTTTGATTCATACACATGAAGATGTTGAGTTGTTGGTTGACACAGAAATCATTAGCCATGAACTTGGAAGTCATGCAGAATTGGCAACATTGGTTAATGGTCTTTGCAAATATGTTGTGGTGACATCAAATTGTTATGGAAAGATCATTAAGGAAATGAATGAACATTATAATAACTGGTGGAAACATTATATGGGAATGTTAAGGTCGGTGTATTTTCGTGATCCTTGGAGAGTTAGTTCAACTGTTGTTGGAATTGCTATTTTCTTATTTGCTGCTGTCAATTTTCTTAGAGTTATTGGTGTATTTCGTTTGAAGTAG

Protein sequence

>MsG0880041860.01.T01

MPGLDLITELRLFKKRLEDIVYEIELYYERIVFKQILYNSREFVIYHIEYIEDLLRDTEDLENLTQIQKQRAKTLLKPFQGLFKIEQMLKEVRENSAENPTSNLVKKGREICVTMGSETIPQIQHIINIPEIIEPMLHEKCCIYKVPHHLLKLNEDAFTPKFISIGPFHSQNPELNQEKQKQRYFHAFWKRLSNKQTLALVQYKAFLEENRENIANCYSKQELCQDEKFLEMILLDSVFIMELFLRKVNESEQKNDFMFTTSWIYKMTQRDLLLLENQIPMFVLEELHRGVLLAEKNGCNSNKENSASFIDLAFNYFEDYYPQKLTSQKLELTQNCKPCNHFTDLIRYTYLPREIQVKGVNPSKSFTPFRPEYVLRTATKLSEAGISFEKVQGKSYCDLKFKKTPILSWFLCLGCVPCFKFVESKLQIPHLNVDQATECVLRNLIAFEQCHYSDQPFICNYVSLIDSLIHTHEDVELLVDTEIISHELGSHAELATLVNGLCKYVVVTSNCYGKIIKEMNEHYNNWWKHYMGMLRSVYFRDPWRVSSTVVGIAIFLFAAVNFLRVIGVFRLK*