AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380018016.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380018016.01.T01 MTR_3g117350 75.146 342 13 3 23 292 30 371 3.06e-169 473
MsG0380018016.01.T01 MTR_4g071540 69.027 339 32 5 27 292 34 372 7.95e-147 417
MsG0380018016.01.T01 MTR_4g071540 65.108 278 24 5 27 231 34 311 1.45e-101 301
MsG0380018016.01.T01 MTR_8g087990 43.072 332 118 9 21 292 28 348 4.12e-73 228
MsG0380018016.01.T01 MTR_8g087990 44.631 298 128 10 21 292 28 314 1.83e-70 220
MsG0380018016.01.T01 MTR_5g026400 35.860 343 144 6 22 290 24 364 1.18e-60 197
MsG0380018016.01.T01 MTR_5g026400 35.714 350 135 6 22 290 26 366 1.28e-60 197
MsG0380018016.01.T01 MTR_5g026400 35.345 348 144 7 22 290 24 369 3.13e-58 191
MsG0380018016.01.T01 MTR_5g026400 36.449 214 84 2 22 183 24 237 7.48e-35 128
MsG0380018016.01.T01 MTR_5g026400 36.449 214 84 2 22 183 26 239 1.39e-34 127
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380018016.01.T01 AT4G34660 57.784 334 69 3 31 292 35 368 4.52e-132 379
MsG0380018016.01.T01 AT4G34660 57.576 330 68 3 35 292 16 345 1.95e-129 372
MsG0380018016.01.T01 AT4G34660 51.438 313 71 4 31 292 35 317 5.26e-101 298
MsG0380018016.01.T01 AT4G18060 42.687 335 118 7 21 292 28 351 5.87e-80 246
MsG0380018016.01.T01 AT4G39020 67.059 85 28 0 208 292 85 169 9.91e-37 129
MsG0380018016.01.T01 AT1G31440 39.151 212 79 3 22 183 26 237 1.50e-36 135
MsG0380018016.01.T01 AT1G31440 42.857 91 49 1 203 290 343 433 5.06e-20 89.7

Find 115 sgRNAs with CRISPR-Local

Find 377 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGAAAATTGATTTGTGATTT+AGG 0.163304 3:-103406771 MsG0380018016.01.T01:three_prime_UTR
CTTTCGCACCTTGTGTTCTT+AGG 0.209218 3:-103406657 MsG0380018016.01.T01:three_prime_UTR
TGCTGAAACAGTTTGGGGCT+GGG 0.260382 3:-103411196 MsG0380018016.01.T01:CDS
GTGCTGAAACAGTTTGGGGC+TGG 0.274861 3:-103411197 MsG0380018016.01.T01:CDS
ACAGTTTGGGGCTGGGGATA+TGG 0.278136 3:-103411189 MsG0380018016.01.T01:CDS
TAATGGCATAACTGACAGTA+TGG 0.305114 3:-103407396 MsG0380018016.01.T01:CDS
ACCCATCACCATTGCTCTTA+AGG 0.311073 3:+103408205 None:intergenic
GTAGAAGGTTACATTGTTAC+TGG 0.311388 3:-103410950 MsG0380018016.01.T01:CDS
ATATGGAGGTTCGGATAATA+TGG 0.313809 3:-103411172 MsG0380018016.01.T01:CDS
AGGCTGTGCTGAAACAGTTT+GGG 0.315561 3:-103411202 MsG0380018016.01.T01:CDS
GAAGTCAAACATGGCCATAT+TGG 0.316099 3:-103407876 MsG0380018016.01.T01:CDS
TGCTGAAAATATTATGAAAC+TGG 0.318785 3:-103407927 MsG0380018016.01.T01:CDS
GACAGTATGGGTTACTTCTT+AGG 0.321074 3:-103407383 MsG0380018016.01.T01:CDS
AAGTCAAACATGGCCATATT+GGG 0.328488 3:-103407875 MsG0380018016.01.T01:CDS
CCATGTTTGACTTCAGGTCT+TGG 0.331661 3:+103407885 None:intergenic
TAGGCTGTGCTGAAACAGTT+TGG 0.335056 3:-103411203 MsG0380018016.01.T01:CDS
TTACTGGAGGAATATATTCT+TGG 0.341447 3:+103406609 None:intergenic
GGATCAAAGCAAGTTGAAAT+AGG 0.341883 3:-103410929 MsG0380018016.01.T01:intron
ATATGGCCATGTTTGACTTC+AGG 0.342498 3:+103407879 None:intergenic
AGCTGCTTCCTTCCCCAATA+TGG 0.361155 3:+103407862 None:intergenic
ATATTCCTCCAGTAATTATA+TGG 0.361319 3:-103406601 MsG0380018016.01.T01:three_prime_UTR
CAATAGCACCATATAATTAC+TGG 0.364454 3:+103406593 None:intergenic
CCCATCACCATTGCTCTTAA+GGG 0.378074 3:+103408206 None:intergenic
AACTTCAGACTCAGCATGAT+AGG 0.393217 3:+103407251 None:intergenic
ATAATTGACAAAATTAGCTT+TGG 0.394974 3:-103406544 None:intergenic
AATGGTGATGGGTGCTCCTT+TGG 0.395581 3:-103408195 MsG0380018016.01.T01:CDS
CACCTCACATGCCGGTTATG+TGG 0.396605 3:-103411379 MsG0380018016.01.T01:CDS
ACCTCACATGCCGGTTATGT+GGG 0.402946 3:-103411378 MsG0380018016.01.T01:CDS
TAACTCTTCCATTGCATTGG+AGG 0.406254 3:-103406695 MsG0380018016.01.T01:three_prime_UTR
TTGAACTGAATTTATCAGTT+GGG 0.407755 3:-103407230 MsG0380018016.01.T01:CDS
GATATTGTCCGTGGAGTAGA+AGG 0.411921 3:-103410965 MsG0380018016.01.T01:CDS
CCCTATGGCAAGAAACCAAC+TGG 0.418105 3:+103406854 None:intergenic
ACACCATTCACTTCTTCATA+TGG 0.418813 3:+103407437 None:intergenic
CCACCTTGCTTGCAAGGACC+TGG 0.436876 3:+103406896 None:intergenic
AAAGCAGGTTGGTTTCCATT+TGG 0.439875 3:-103406937 MsG0380018016.01.T01:CDS
TCTTCATATGGTGGAGGTGG+TGG 0.441768 3:+103407449 None:intergenic
GCTGAAACAGTTTGGGGCTG+GGG 0.444640 3:-103411195 MsG0380018016.01.T01:CDS
ATTGTGAATGTGTTCGTGTT+TGG 0.447303 3:-103406831 MsG0380018016.01.T01:three_prime_UTR
CCAGTTGGTTTCTTGCCATA+GGG 0.447327 3:-103406854 MsG0380018016.01.T01:three_prime_UTR
ATAACTCAACCCCACATAAC+CGG 0.455953 3:+103411368 None:intergenic
TCATAACTCTTCCATTGCAT+TGG 0.457106 3:-103406698 MsG0380018016.01.T01:three_prime_UTR
GAATGGTGTCTATGCTTCTC+AGG 0.460161 3:-103407423 MsG0380018016.01.T01:CDS
CTAAACGCCAGGCAAAAGTA+AGG 0.465429 3:-103407964 MsG0380018016.01.T01:CDS
CTTCTTTCAACAAAACCAAA+TGG 0.466492 3:+103406922 None:intergenic
TATGCTTCTCAGGAACATAA+TGG 0.468519 3:-103407413 MsG0380018016.01.T01:CDS
GACAGGTGTCAAACAATGGA+TGG 0.474962 3:-103406981 MsG0380018016.01.T01:intron
CTTCCGCCACCTTGCTTGCA+AGG 0.475894 3:+103406890 None:intergenic
TCCAGTTGGTTTCTTGCCAT+AGG 0.483850 3:-103406855 MsG0380018016.01.T01:three_prime_UTR
ACTTCTTCATATGGTGGAGG+TGG 0.493280 3:+103407446 None:intergenic
GGGCTGAGGGTGAATGCAAA+GGG 0.500360 3:-103406960 MsG0380018016.01.T01:CDS
GGAAGCAGCTGCAGCAATGA+CGG 0.500902 3:-103407849 MsG0380018016.01.T01:CDS
TTTCTTTCAGCATTATCAAA+GGG 0.513025 3:-103410987 MsG0380018016.01.T01:intron
TATTGAAGTTTCTAAACGCC+AGG 0.513265 3:-103407975 MsG0380018016.01.T01:CDS
GCGACAGGATGCTGAAGCTC+AGG 0.514074 3:-103408136 MsG0380018016.01.T01:intron
GTTGAACTGAATTTATCAGT+TGG 0.517089 3:-103407231 MsG0380018016.01.T01:CDS
TATCTACACTAGGTGTAGGT+GGG 0.518680 3:+103407480 None:intergenic
CCCTTAAGAGCAATGGTGAT+GGG 0.520874 3:-103408206 MsG0380018016.01.T01:CDS
TTATCTACACTAGGTGTAGG+TGG 0.524126 3:+103407479 None:intergenic
GGGCTGGGGATATGGAGGTT+CGG 0.524359 3:-103411181 MsG0380018016.01.T01:CDS
CTGTTATCTACACTAGGTGT+AGG 0.524825 3:+103407476 None:intergenic
TGAACTGAATTTATCAGTTG+GGG 0.532330 3:-103407229 MsG0380018016.01.T01:CDS
CATATCCACACGTGCAGGAA+AGG 0.533423 3:-103411100 MsG0380018016.01.T01:intron
GGTCCTTGCAAGCAAGGTGG+CGG 0.537462 3:-103406893 MsG0380018016.01.T01:CDS
ATCAGAACGGCAGCGTATTG+AGG 0.541345 3:-103407504 MsG0380018016.01.T01:CDS
GGTGAATGCAAAGGGAAAGC+AGG 0.542608 3:-103406952 MsG0380018016.01.T01:CDS
AGCTGCAGCAATGACGGCTG+TGG 0.542761 3:-103407843 MsG0380018016.01.T01:CDS
GGCTGTGCTGAAACAGTTTG+GGG 0.543764 3:-103411201 MsG0380018016.01.T01:CDS
ATTTCTTTCAGCATTATCAA+AGG 0.545451 3:-103410988 MsG0380018016.01.T01:intron
TTCACTTCTTCATATGGTGG+AGG 0.545910 3:+103407443 None:intergenic
GCCCTTAAGAGCAATGGTGA+TGG 0.546031 3:-103408207 MsG0380018016.01.T01:CDS
GGACCAGGTCCTTGCAAGCA+AGG 0.553869 3:-103406899 MsG0380018016.01.T01:CDS
GTCAAACAATGGATGGGCTG+AGG 0.554397 3:-103406974 MsG0380018016.01.T01:CDS
TGGGCTGAGGGTGAATGCAA+AGG 0.554437 3:-103406961 MsG0380018016.01.T01:CDS
CTTTACATATCCACACGTGC+AGG 0.554567 3:-103411105 MsG0380018016.01.T01:CDS
GGATTATATTGTCATTCGAA+AGG 0.558804 3:-103407208 MsG0380018016.01.T01:intron
GCAGTCCTCACCTCACATGC+CGG 0.562434 3:-103411387 MsG0380018016.01.T01:CDS
ACTCCAGCGTCTTATAGCTA+TGG 0.563682 3:-103407798 MsG0380018016.01.T01:intron
CCCCACATAACCGGCATGTG+AGG 0.564177 3:+103411377 None:intergenic
ACTTCAGACTCAGCATGATA+GGG 0.565386 3:+103407252 None:intergenic
GTTTGGGGCTGGGGATATGG+AGG 0.567335 3:-103411186 MsG0380018016.01.T01:CDS
CTGTGGAAGCACAGCAGCAG+AGG 0.569999 3:-103407826 MsG0380018016.01.T01:CDS
ACGTTATGACAGAATGCGAC+AGG 0.570308 3:-103408151 MsG0380018016.01.T01:CDS
TTAACAAGTGTTTATATGTG+GGG 0.570902 3:-103411410 None:intergenic
TGCAGAGCCCTTAAGAGCAA+TGG 0.574125 3:-103408213 MsG0380018016.01.T01:CDS
AGTAACCTTTCCTGCACGTG+TGG 0.574166 3:+103411095 None:intergenic
ATCTACACTAGGTGTAGGTG+GGG 0.575722 3:+103407481 None:intergenic
TCAAACAATGGATGGGCTGA+GGG 0.578585 3:-103406973 MsG0380018016.01.T01:CDS
TATGAACACCTCCAATGCAA+TGG 0.578677 3:+103406687 None:intergenic
GAACACATTCACAATCCCTA+TGG 0.586341 3:+103406839 None:intergenic
CCACCATATGAAGAAGTGAA+TGG 0.586782 3:-103407440 MsG0380018016.01.T01:CDS
CCATTCACTTCTTCATATGG+TGG 0.591442 3:+103407440 None:intergenic
GGTGCTCCTTTGGAGATGCT+AGG 0.592069 3:-103408185 MsG0380018016.01.T01:CDS
CTTAATAACCTAAGAACACA+AGG 0.598861 3:+103406649 None:intergenic
AAACATGGCCATATTGGGGA+AGG 0.604010 3:-103407870 MsG0380018016.01.T01:CDS
TAACAAGTGTTTATATGTGG+GGG 0.607460 3:-103411409 None:intergenic
AATGCAAAGGGAAAGCAGGT+TGG 0.608458 3:-103406948 MsG0380018016.01.T01:CDS
TCTATCGATCGATAATCGCA+TGG 0.614516 3:+103406736 None:intergenic
TATGGGTTACTTCTTAGGAG+AGG 0.616229 3:-103407378 MsG0380018016.01.T01:intron
CCAAGACCTGAAGTCAAACA+TGG 0.625705 3:-103407885 MsG0380018016.01.T01:CDS
CCTCACATGCCGGTTATGTG+GGG 0.626377 3:-103411377 MsG0380018016.01.T01:intron
TAAACGCCAGGCAAAAGTAA+GGG 0.626804 3:-103407963 MsG0380018016.01.T01:CDS
CAATGTAACCTTCTACTCCA+CGG 0.635038 3:+103410957 None:intergenic
AGTCAAACATGGCCATATTG+GGG 0.637825 3:-103407874 MsG0380018016.01.T01:CDS
ATACCATAGCTATAAGACGC+TGG 0.640354 3:+103407795 None:intergenic
AATGGCATAACTGACAGTAT+GGG 0.640455 3:-103407395 MsG0380018016.01.T01:CDS
TATCAAAGGGATATTGTCCG+TGG 0.648998 3:-103410974 MsG0380018016.01.T01:CDS
GGCATGCTGTTATCTACACT+AGG 0.651577 3:+103407470 None:intergenic
CATAACCGGCATGTGAGGTG+AGG 0.653232 3:+103411382 None:intergenic
ACAGGTGTCAAACAATGGAT+GGG 0.661310 3:-103406980 MsG0380018016.01.T01:intron
AATGATAGATGATATCAGAA+CGG 0.667024 3:-103407517 MsG0380018016.01.T01:intron
AAGATGCCTAGCATCTCCAA+AGG 0.667073 3:+103408179 None:intergenic
GGATAATATGGTTACTGACG+AGG 0.675143 3:-103411160 MsG0380018016.01.T01:CDS
CCAGGTCCTTGCAAGCAAGG+TGG 0.677427 3:-103406896 MsG0380018016.01.T01:CDS
GCAAAAGTAAGGGAAACACC+AGG 0.682366 3:-103407953 MsG0380018016.01.T01:CDS
TAGCACCATATAATTACTGG+AGG 0.687741 3:+103406596 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAGAAAAAATAAAAAAC+TGG + Chr3:103409858-103409877 None:intergenic 10.0%
!!! AGTTTTTTATTTTTTCTTTT+TGG - Chr3:103409857-103409876 MsG0380018016.01.T01:intron 10.0%
!!! TTATTTATTTTTTGAAAACT+TGG - Chr3:103408710-103408729 MsG0380018016.01.T01:intron 10.0%
!! ATCAAAAAGAAAACAATATT+GGG + Chr3:103409261-103409280 None:intergenic 15.0%
!! CAGTTTATGATAAAATAAAT+CGG + Chr3:103407904-103407923 None:intergenic 15.0%
!! TATCAAAAAGAAAACAATAT+TGG + Chr3:103409262-103409281 None:intergenic 15.0%
!! TTGAAATTGGTAAAAAATAT+TGG + Chr3:103409229-103409248 None:intergenic 15.0%
!! TTGTGATATTGATAAAATAT+TGG + Chr3:103408071-103408090 None:intergenic 15.0%
!!! TGATTTTAAAACAAAAAAAC+CGG - Chr3:103409022-103409041 MsG0380018016.01.T01:intron 15.0%
!!! TTATTTTTAAACTTGTCTTT+TGG - Chr3:103408935-103408954 MsG0380018016.01.T01:intron 15.0%
!!! TTCTATACATGTTATTTAAT+AGG - Chr3:103407231-103407250 MsG0380018016.01.T01:CDS 15.0%
!!! TTGTTCGTAATTTATTTTTT+CGG - Chr3:103410900-103410919 MsG0380018016.01.T01:intron 15.0%
!!! TTGTTTTCTATTTTTGTTTT+TGG - Chr3:103407636-103407655 MsG0380018016.01.T01:intron 15.0%
!!! TTTCTATTTTAAAATGATCT+GGG - Chr3:103409295-103409314 MsG0380018016.01.T01:intron 15.0%
!! AAAATTGAAACAATTCAACA+AGG + Chr3:103409515-103409534 None:intergenic 20.0%
!! AAATCACAATCATATTTGTT+AGG + Chr3:103410939-103410958 None:intergenic 20.0%
!! AAATTCAATGACAATATGAT+AGG + Chr3:103407207-103407226 None:intergenic 20.0%
!! AAATTGAAACAATTCAACAA+GGG + Chr3:103409514-103409533 None:intergenic 20.0%
!! AATATCTTATATTCATGCAT+TGG - Chr3:103407156-103407175 MsG0380018016.01.T01:intron 20.0%
!! AATGTTAAATTATCATTGCT+TGG - Chr3:103407523-103407542 MsG0380018016.01.T01:intron 20.0%
!! ATAAGATATTAGAAATAGAG+AGG + Chr3:103407146-103407165 None:intergenic 20.0%
!! ATGATAATTTAACATTACAG+TGG + Chr3:103407519-103407538 None:intergenic 20.0%
!! ATTTGTAACCTTAAAAGAAA+TGG + Chr3:103410594-103410613 None:intergenic 20.0%
!! CAAGTAAAAAATAGAAAAGA+GGG + Chr3:103410845-103410864 None:intergenic 20.0%
!! CTTGATATCAAAAGATAATT+CGG + Chr3:103410378-103410397 None:intergenic 20.0%
!! GAATTAAATCAATAATGCAA+TGG + Chr3:103408572-103408591 None:intergenic 20.0%
!! TACTCAGTTAGATTTAATAT+TGG + Chr3:103409580-103409599 None:intergenic 20.0%
!! TTATTTGAACATTGAAGTAT+TGG - Chr3:103409692-103409711 MsG0380018016.01.T01:intron 20.0%
!! TTGATTTATGAAAAACAAAC+CGG - Chr3:103409052-103409071 MsG0380018016.01.T01:intron 20.0%
!! TTTATTTGTTTAAAAACCTC+AGG - Chr3:103408998-103409017 MsG0380018016.01.T01:intron 20.0%
!!! AAATAGATTGCTATTTTAAG+TGG + Chr3:103410246-103410265 None:intergenic 20.0%
!!! AATAGATTGCTATTTTAAGT+GGG + Chr3:103410245-103410264 None:intergenic 20.0%
!!! AGAAAATTGATTTGTGATTT+AGG - Chr3:103411170-103411189 MsG0380018016.01.T01:CDS 20.0%
!!! ATGTTATTTAATAGGAACAA+AGG - Chr3:103407239-103407258 MsG0380018016.01.T01:CDS 20.0%
!!! CGATTTATTTTATCATAAAC+TGG - Chr3:103407902-103407921 MsG0380018016.01.T01:CDS 20.0%
!!! GAATTACAAAAACCATTTTT+AGG - Chr3:103409194-103409213 MsG0380018016.01.T01:intron 20.0%
!!! GTTTCTATTTTAAAATGATC+TGG - Chr3:103409294-103409313 MsG0380018016.01.T01:intron 20.0%
!!! TAACTTCATTTTAGAAATGA+GGG + Chr3:103406600-103406619 None:intergenic 20.0%
!!! TATTGTTTTCTTTTTGATAC+AGG - Chr3:103409263-103409282 MsG0380018016.01.T01:intron 20.0%
!!! TGTTCGTAATTTATTTTTTC+GGG - Chr3:103410901-103410920 MsG0380018016.01.T01:intron 20.0%
!!! TTAAACAAGTTCTAGAAAAT+TGG + Chr3:103408013-103408032 None:intergenic 20.0%
!!! TTTATTGGTGTATATCTTTT+GGG - Chr3:103408968-103408987 MsG0380018016.01.T01:intron 20.0%
!!! TTTTTACCAATTTCAAATGT+GGG - Chr3:103409233-103409252 MsG0380018016.01.T01:intron 20.0%
!!! TTTTTTACCAATTTCAAATG+TGG - Chr3:103409232-103409251 MsG0380018016.01.T01:intron 20.0%
! AAATAGGTTAGTATATTGGT+TGG - Chr3:103407028-103407047 MsG0380018016.01.T01:intron 25.0%
! AATCACAATTGTTGTGATTT+AGG - Chr3:103406719-103406738 MsG0380018016.01.T01:three_prime_UTR 25.0%
! AATGATAGATGATATCAGAA+CGG - Chr3:103410424-103410443 MsG0380018016.01.T01:intron 25.0%
! AATTGAAACAATTCAACAAG+GGG + Chr3:103409513-103409532 None:intergenic 25.0%
! AGAAAGTAAAGTAAGCTAAA+CGG + Chr3:103410638-103410657 None:intergenic 25.0%
! AGACTATTCATTATCTGAAA+GGG - Chr3:103407763-103407782 MsG0380018016.01.T01:intron 25.0%
! AGTAAGAAAAAATTGAGAAG+TGG + Chr3:103406665-103406684 None:intergenic 25.0%
! AGTGGAAATCTACATTATTT+CGG + Chr3:103407494-103407513 None:intergenic 25.0%
! ATAATAGGTTAATTACACAG+AGG - Chr3:103408514-103408533 MsG0380018016.01.T01:intron 25.0%
! ATATTCCTCCAGTAATTATA+TGG - Chr3:103411340-103411359 MsG0380018016.01.T01:intron 25.0%
! ATATTTATAGGGTGGAAATT+AGG + Chr3:103407843-103407862 None:intergenic 25.0%
! ATCAATAATGCAATGGTTAT+TGG + Chr3:103408565-103408584 None:intergenic 25.0%
! ATTTCTTTCAGCATTATCAA+AGG - Chr3:103406953-103406972 MsG0380018016.01.T01:CDS 25.0%
! GAAAGTCGAAATTTAAGTAT+TGG - Chr3:103407694-103407713 MsG0380018016.01.T01:intron 25.0%
! GCAAGTAAAAAATAGAAAAG+AGG + Chr3:103410846-103410865 None:intergenic 25.0%
! GTGATTAATTATTAACACCA+CGG + Chr3:103406705-103406724 None:intergenic 25.0%
! GTTAGATTTAATATTGGACT+TGG + Chr3:103409574-103409593 None:intergenic 25.0%
! GTTGAAATAGGTTAGTATAT+TGG - Chr3:103407024-103407043 MsG0380018016.01.T01:intron 25.0%
! TAATTTCCACCCTATAAATA+TGG - Chr3:103407842-103407861 MsG0380018016.01.T01:CDS 25.0%
! TAGACTATTCATTATCTGAA+AGG - Chr3:103407762-103407781 MsG0380018016.01.T01:intron 25.0%
! TGCTGAAAATATTATGAAAC+TGG - Chr3:103410014-103410033 MsG0380018016.01.T01:intron 25.0%
! TTAAATTATCATTGCTTGGA+TGG - Chr3:103407527-103407546 MsG0380018016.01.T01:intron 25.0%
! TTCATAAATCAATTCAGAAC+CGG + Chr3:103409044-103409063 None:intergenic 25.0%
! TTGAACTGAATTTATCAGTT+GGG - Chr3:103410711-103410730 MsG0380018016.01.T01:intron 25.0%
! TTGATACTTATATCCTTTGT+AGG + Chr3:103408200-103408219 None:intergenic 25.0%
! TTTCCAAATCTGATTAAAAC+TGG - Chr3:103407962-103407981 MsG0380018016.01.T01:CDS 25.0%
! TTTCTTTCAGCATTATCAAA+GGG - Chr3:103406954-103406973 MsG0380018016.01.T01:CDS 25.0%
!! AAATTATGATCGCTTTGAAT+TGG + Chr3:103408337-103408356 None:intergenic 25.0%
!! AGAAGTGATAGAAATTTTGA+TGG - Chr3:103407786-103407805 MsG0380018016.01.T01:intron 25.0%
!! GTTTATTGGTGTATATCTTT+TGG - Chr3:103408967-103408986 MsG0380018016.01.T01:intron 25.0%
!! TTTTCTTTTTGATACAGGTA+AGG - Chr3:103409268-103409287 MsG0380018016.01.T01:intron 25.0%
!!! AATATGATTGTGATTTTGAC+AGG - Chr3:103410943-103410962 MsG0380018016.01.T01:CDS 25.0%
!!! ACAAAAACCATTTTTAGGTT+TGG - Chr3:103409199-103409218 MsG0380018016.01.T01:intron 25.0%
!!! ATAGAAATTTTGATGGTGTA+TGG - Chr3:103407793-103407812 MsG0380018016.01.T01:intron 25.0%
!!! ATTTGGTTTTGTTGAAAGAA+GGG - Chr3:103411021-103411040 MsG0380018016.01.T01:intron 25.0%
!!! CAAAAACCATTTTTAGGTTT+GGG - Chr3:103409200-103409219 MsG0380018016.01.T01:intron 25.0%
!!! CAATCTATTTCTGATTATGA+AGG - Chr3:103410256-103410275 MsG0380018016.01.T01:intron 25.0%
!!! GCTTATTTTCCTACATTTTT+GGG + Chr3:103408111-103408130 None:intergenic 25.0%
!!! GGAAAAAACAGTTTTAAATC+TGG + Chr3:103407947-103407966 None:intergenic 25.0%
!!! GTAACTTCATTTTAGAAATG+AGG + Chr3:103406601-103406620 None:intergenic 25.0%
!!! TGCTTATTTTCCTACATTTT+TGG + Chr3:103408112-103408131 None:intergenic 25.0%
!!! TTTGGTCTTTTGTTGTTTAT+TGG - Chr3:103408953-103408972 MsG0380018016.01.T01:intron 25.0%
AAAAAATAGAAAAGAGGGAG+AGG + Chr3:103410840-103410859 None:intergenic 30.0%
AAACATAACTCACGTAAATC+TGG + Chr3:103409482-103409501 None:intergenic 30.0%
AAATAAACATGAACCCCATT+TGG + Chr3:103408921-103408940 None:intergenic 30.0%
AATGACAATATGATAGGAAC+TGG + Chr3:103407201-103407220 None:intergenic 30.0%
ACTTGTAATTGTGTGATTTC+AGG - Chr3:103409384-103409403 MsG0380018016.01.T01:intron 30.0%
AGATTTACGTGAGTTATGTT+TGG - Chr3:103409481-103409500 MsG0380018016.01.T01:intron 30.0%
ATCCATATACATTCATGAGT+TGG - Chr3:103409610-103409629 MsG0380018016.01.T01:intron 30.0%
ATTGAAACAATTCAACAAGG+GGG + Chr3:103409512-103409531 None:intergenic 30.0%
CAATAGCACCATATAATTAC+TGG + Chr3:103411351-103411370 None:intergenic 30.0%
CAGACTATTGTAGAAGATTT+CGG + Chr3:103407667-103407686 None:intergenic 30.0%
CATGTCATTATCAGTAATGA+AGG + Chr3:103406929-103406948 None:intergenic 30.0%
CATTATCAGTAATGAAGGAA+GGG + Chr3:103406924-103406943 None:intergenic 30.0%
CTTAATAACCTAAGAACACA+AGG + Chr3:103411295-103411314 None:intergenic 30.0%
CTTCTTTCAACAAAACCAAA+TGG + Chr3:103411022-103411041 None:intergenic 30.0%
CTTGTAATTGTGTGATTTCA+GGG - Chr3:103409385-103409404 MsG0380018016.01.T01:intron 30.0%
CTTGTGATTATAATCTAGCA+TGG + Chr3:103407605-103407624 None:intergenic 30.0%
GGATTATATTGTCATTCGAA+AGG - Chr3:103410733-103410752 MsG0380018016.01.T01:intron 30.0%
GTTGAACTGAATTTATCAGT+TGG - Chr3:103410710-103410729 MsG0380018016.01.T01:intron 30.0%
TAAATGATTTCTTCCTGAGT+TGG - Chr3:103409430-103409449 MsG0380018016.01.T01:intron 30.0%
TATATTTAGCTGTCCTACAA+AGG - Chr3:103408184-103408203 MsG0380018016.01.T01:CDS 30.0%
TATGCAACGCCATATTTATA+GGG + Chr3:103407854-103407873 None:intergenic 30.0%
TCAAAGCGATCATAATTTGA+TGG - Chr3:103408339-103408358 MsG0380018016.01.T01:intron 30.0%
TCATTATCAGTAATGAAGGA+AGG + Chr3:103406925-103406944 None:intergenic 30.0%
TGAAATCACACAATTACAAG+TGG + Chr3:103409385-103409404 None:intergenic 30.0%
TGAACTGAATTTATCAGTTG+GGG - Chr3:103410712-103410731 MsG0380018016.01.T01:intron 30.0%
TTACTGGAGGAATATATTCT+TGG + Chr3:103411335-103411354 None:intergenic 30.0%
TTCAAAAAAGCAATCTGGTT+TGG - Chr3:103409076-103409095 MsG0380018016.01.T01:intron 30.0%
TTCAGAAAATACTTGTACCA+TGG - Chr3:103407287-103407306 MsG0380018016.01.T01:intron 30.0%
TTTGTAGGACAGCTAAATAT+AGG + Chr3:103408185-103408204 None:intergenic 30.0%
! AGGTTAGACCATTTCTTTTA+AGG - Chr3:103410583-103410602 MsG0380018016.01.T01:intron 30.0%
! ATAATATTTTCAGCATTGCC+TGG + Chr3:103410009-103410028 None:intergenic 30.0%
! ATGCTTTTATAACTCTCAGA+AGG - Chr3:103408244-103408263 MsG0380018016.01.T01:intron 30.0%
! GTATTGGTATCTATTCGATT+TGG - Chr3:103407710-103407729 MsG0380018016.01.T01:intron 30.0%
! GTTTAGCTTACTTTACTTTC+TGG - Chr3:103410637-103410656 MsG0380018016.01.T01:intron 30.0%
! TGCTTTTATAACTCTCAGAA+GGG - Chr3:103408245-103408264 MsG0380018016.01.T01:intron 30.0%
!! CGAAAGGTTTTGATGATTTA+CGG - Chr3:103410749-103410768 MsG0380018016.01.T01:intron 30.0%
!! CTACCAGTTTTAATCAGATT+TGG + Chr3:103407968-103407987 None:intergenic 30.0%
!! GTAAGTATTGATGTCAAACT+TGG + Chr3:103407462-103407481 None:intergenic 30.0%
!! TGAAGTATTGGCTGATATTT+AGG - Chr3:103409704-103409723 MsG0380018016.01.T01:intron 30.0%
!!! CATTTGGTTTTGTTGAAAGA+AGG - Chr3:103411020-103411039 MsG0380018016.01.T01:intron 30.0%
!!! TTTGTTTTAAAATCAGCCTG+AGG + Chr3:103409017-103409036 None:intergenic 30.0%
AAATAAGCCACAAGCTAAAG+AGG + Chr3:103407567-103407586 None:intergenic 35.0%
AACACTAAAATTACACAGCC+TGG - Chr3:103408428-103408447 MsG0380018016.01.T01:intron 35.0%
AAGTCAAACATGGCCATATT+GGG - Chr3:103410066-103410085 MsG0380018016.01.T01:intron 35.0%
AATGGCATAACTGACAGTAT+GGG - Chr3:103410546-103410565 MsG0380018016.01.T01:intron 35.0%
AATTATTAACACCACGGTAG+AGG + Chr3:103406699-103406718 None:intergenic 35.0%
ACACACATCATAGGGTTATT+TGG - Chr3:103407436-103407455 MsG0380018016.01.T01:CDS 35.0%
ACACAGCAAAATTAGAGGAT+TGG + Chr3:103406885-103406904 None:intergenic 35.0%
ACACCATTCACTTCTTCATA+TGG + Chr3:103410507-103410526 None:intergenic 35.0%
ATATGGAGGTTCGGATAATA+TGG - Chr3:103406769-103406788 MsG0380018016.01.T01:three_prime_UTR 35.0%
ATGGCTCATGTATAGAACTA+AGG + Chr3:103409352-103409371 None:intergenic 35.0%
ATTGTGAATGTGTTCGTGTT+TGG - Chr3:103411110-103411129 MsG0380018016.01.T01:CDS 35.0%
ATTTCAAATGTCCATAGTGC+TGG + Chr3:103408161-103408180 None:intergenic 35.0%
CCAATACTTGATCATCTTGA+GGG - Chr3:103410313-103410332 MsG0380018016.01.T01:intron 35.0%
CCACTATTTCCCAAAAATGT+AGG - Chr3:103408099-103408118 MsG0380018016.01.T01:intron 35.0%
CCTATAATCTTCAGCTATAC+AGG - Chr3:103408485-103408504 MsG0380018016.01.T01:intron 35.0%
CCTGTATAGCTGAAGATTAT+AGG + Chr3:103408488-103408507 None:intergenic 35.0%
CTATAAATATGGCGTTGCAT+AGG - Chr3:103407853-103407872 MsG0380018016.01.T01:CDS 35.0%
CTATACAGGTGCAGTATAAT+AGG - Chr3:103408499-103408518 MsG0380018016.01.T01:intron 35.0%
CTATGCAACGCCATATTTAT+AGG + Chr3:103407855-103407874 None:intergenic 35.0%
GAAACTTCAATAGCCTGTAT+AGG + Chr3:103409958-103409977 None:intergenic 35.0%
GACCAACTCATGAATGTATA+TGG + Chr3:103409615-103409634 None:intergenic 35.0%
GAGAAACACAGCAAAATTAG+AGG + Chr3:103406890-103406909 None:intergenic 35.0%
GGTATTACAGTTTCACCATA+TGG - Chr3:103410164-103410183 MsG0380018016.01.T01:intron 35.0%
GTAGAAGGTTACATTGTTAC+TGG - Chr3:103406991-103407010 MsG0380018016.01.T01:intron 35.0%
GTCAATATTTACTCACAGTC+AGG + Chr3:103409544-103409563 None:intergenic 35.0%
TAATGGCATAACTGACAGTA+TGG - Chr3:103410545-103410564 MsG0380018016.01.T01:intron 35.0%
TAGCACCATATAATTACTGG+AGG + Chr3:103411348-103411367 None:intergenic 35.0%
TAGTTATGTACATCCAACTC+AGG + Chr3:103409446-103409465 None:intergenic 35.0%
TATTGAAGTTTCTAAACGCC+AGG - Chr3:103409966-103409985 MsG0380018016.01.T01:intron 35.0%
TCAGAAGATAGCAGGAAATA+TGG - Chr3:103407264-103407283 MsG0380018016.01.T01:CDS 35.0%
TCATAACTCTTCCATTGCAT+TGG - Chr3:103411243-103411262 MsG0380018016.01.T01:intron 35.0%
TCCAATACTTGATCATCTTG+AGG - Chr3:103410312-103410331 MsG0380018016.01.T01:intron 35.0%
TGAAGATTATAGGTTTCCCA+AGG + Chr3:103408478-103408497 None:intergenic 35.0%
TGTGAGTAAATATTGACGCT+AGG - Chr3:103409547-103409566 MsG0380018016.01.T01:intron 35.0%
TTTAACATTACAGTGGTCAG+TGG + Chr3:103407512-103407531 None:intergenic 35.0%
! CTTTTTGATACAGGTAAGGT+TGG - Chr3:103409272-103409291 MsG0380018016.01.T01:intron 35.0%
! GCTTTGAATTGGTGTAACAA+TGG + Chr3:103408326-103408345 None:intergenic 35.0%
! GCTTTTATAACTCTCAGAAG+GGG - Chr3:103408246-103408265 MsG0380018016.01.T01:intron 35.0%
! GGATCAAAGCAAGTTGAAAT+AGG - Chr3:103407012-103407031 MsG0380018016.01.T01:intron 35.0%
! TAGTTCTATACATGAGCCAT+CGG - Chr3:103409352-103409371 MsG0380018016.01.T01:intron 35.0%
! TTTTGACAGGTGTCAAACAA+TGG - Chr3:103410956-103410975 MsG0380018016.01.T01:CDS 35.0%
!! ATAGGAACTGGTATTGATAC+TGG + Chr3:103407189-103407208 None:intergenic 35.0%
!! CCTACATTTTTGGGAAATAG+TGG + Chr3:103408102-103408121 None:intergenic 35.0%
!! TAGGAACTGGTATTGATACT+GGG + Chr3:103407188-103407207 None:intergenic 35.0%
!! TCTGTCTTTGAAACCTATAC+AGG - Chr3:103409942-103409961 MsG0380018016.01.T01:intron 35.0%
!! TTATGTTCCTCTTTAGCTTG+TGG - Chr3:103407557-103407576 MsG0380018016.01.T01:intron 35.0%
!! TTGATGGATTCAAAGCATTG+AGG - Chr3:103408355-103408374 MsG0380018016.01.T01:intron 35.0%
!!! AGATTGCTATTTTAAGTGGG+AGG + Chr3:103410242-103410261 None:intergenic 35.0%
!!! AGTGTTTTGAAGTTTCCAGT+TGG - Chr3:103411072-103411091 MsG0380018016.01.T01:intron 35.0%
!!! CCAGATTGCTTTTTTGAAAC+CGG + Chr3:103409074-103409093 None:intergenic 35.0%
!!! GAAATTTTGATGGTGTATGG+TGG - Chr3:103407796-103407815 MsG0380018016.01.T01:intron 35.0%
AAAACTTGGTATCCAGTCCA+AGG - Chr3:103408724-103408743 MsG0380018016.01.T01:intron 40.0%
AAACAATCTGCAGATAGCCT+TGG - Chr3:103408458-103408477 MsG0380018016.01.T01:intron 40.0%
AACAATCTGCAGATAGCCTT+GGG - Chr3:103408459-103408478 MsG0380018016.01.T01:intron 40.0%
AACTTCAGACTCAGCATGAT+AGG + Chr3:103410693-103410712 None:intergenic 40.0%
AATTCTTGTCTGAACCTCTC+AGG + Chr3:103409179-103409198 None:intergenic 40.0%
ACAGGTGTCAAACAATGGAT+GGG - Chr3:103410961-103410980 MsG0380018016.01.T01:CDS 40.0%
ACTTCAGACTCAGCATGATA+GGG + Chr3:103410692-103410711 None:intergenic 40.0%
AGGCAATCACAAAAATCCCA+CGG + Chr3:103409159-103409178 None:intergenic 40.0%
AGTCAAACATGGCCATATTG+GGG - Chr3:103410067-103410086 MsG0380018016.01.T01:intron 40.0%
ATAAACATGAGCCAGAGAAC+AGG + Chr3:103408690-103408709 None:intergenic 40.0%
ATAACTCAACCCCACATAAC+CGG + Chr3:103406576-103406595 None:intergenic 40.0%
ATACCATAGCTATAAGACGC+TGG + Chr3:103410149-103410168 None:intergenic 40.0%
CAATGTAACCTTCTACTCCA+CGG + Chr3:103406987-103407006 None:intergenic 40.0%
CACAAATGGAGAAAGAACGT+GGG - Chr3:103407354-103407373 MsG0380018016.01.T01:intron 40.0%
CCACCATATGAAGAAGTGAA+TGG - Chr3:103410501-103410520 MsG0380018016.01.T01:intron 40.0%
CCATTCACTTCTTCATATGG+TGG + Chr3:103410504-103410523 None:intergenic 40.0%
CCCTCAAGATGATCAAGTAT+TGG + Chr3:103410316-103410335 None:intergenic 40.0%
CCGGTTTCAAAAAAGCAATC+TGG - Chr3:103409071-103409090 MsG0380018016.01.T01:intron 40.0%
CTAAATACTGCAGCACCATA+TGG + Chr3:103410182-103410201 None:intergenic 40.0%
CTGTTATCTACACTAGGTGT+AGG + Chr3:103410468-103410487 None:intergenic 40.0%
GAAATTCAAAGCCTGTTCTC+TGG - Chr3:103408676-103408695 MsG0380018016.01.T01:intron 40.0%
GAACACATTCACAATCCCTA+TGG + Chr3:103411105-103411124 None:intergenic 40.0%
GAAGTCAAACATGGCCATAT+TGG - Chr3:103410065-103410084 MsG0380018016.01.T01:intron 40.0%
GAGCAAGCTCTGTCTTTAAA+TGG + Chr3:103408799-103408818 None:intergenic 40.0%
GCACATCCAAAACATTCTAG+TGG - Chr3:103408622-103408641 MsG0380018016.01.T01:intron 40.0%
GGATAATATGGTTACTGACG+AGG - Chr3:103406781-103406800 MsG0380018016.01.T01:three_prime_UTR 40.0%
GGGAACTTACTAAAAGCTCT+TGG - Chr3:103407374-103407393 MsG0380018016.01.T01:intron 40.0%
GGGATTTGACTATACTGCAT+TGG - Chr3:103409315-103409334 MsG0380018016.01.T01:intron 40.0%
GTTCTTTCTCCATTTGTGCA+CGG + Chr3:103407352-103407371 None:intergenic 40.0%
TAAACGCCAGGCAAAAGTAA+GGG - Chr3:103409978-103409997 MsG0380018016.01.T01:intron 40.0%
TAACTCTTCCATTGCATTGG+AGG - Chr3:103411246-103411265 MsG0380018016.01.T01:intron 40.0%
TAATCTAGCATGGTGAAGCT+TGG + Chr3:103407595-103407614 None:intergenic 40.0%
TATCAAAGGGATATTGTCCG+TGG - Chr3:103406967-103406986 MsG0380018016.01.T01:CDS 40.0%
TATCTACACTAGGTGTAGGT+GGG + Chr3:103410464-103410483 None:intergenic 40.0%
TATGAACACCTCCAATGCAA+TGG + Chr3:103411257-103411276 None:intergenic 40.0%
TCTATCGATCGATAATCGCA+TGG + Chr3:103411208-103411227 None:intergenic 40.0%
TGGCTACCCAAACCTAAAAA+TGG + Chr3:103409209-103409228 None:intergenic 40.0%
TGGTGTAACAATGGCAAGTT+GGG + Chr3:103408317-103408336 None:intergenic 40.0%
TTATCTACACTAGGTGTAGG+TGG + Chr3:103410465-103410484 None:intergenic 40.0%
TTCACTTCTTCATATGGTGG+AGG + Chr3:103410501-103410520 None:intergenic 40.0%
TTCTTTCTCCATTTGTGCAC+GGG + Chr3:103407351-103407370 None:intergenic 40.0%
TTGGTGTAACAATGGCAAGT+TGG + Chr3:103408318-103408337 None:intergenic 40.0%
! ATATGGCCATGTTTGACTTC+AGG + Chr3:103410065-103410084 None:intergenic 40.0%
! CAGTAATGAAGGAAGGGTAT+AGG + Chr3:103406918-103406937 None:intergenic 40.0%
! GACAGTATGGGTTACTTCTT+AGG - Chr3:103410558-103410577 MsG0380018016.01.T01:intron 40.0%
! GATTTTTGTGATTGCCTGAG+AGG - Chr3:103409162-103409181 MsG0380018016.01.T01:intron 40.0%
! TATGGGTTACTTCTTAGGAG+AGG - Chr3:103410563-103410582 MsG0380018016.01.T01:intron 40.0%
! TCAGCACCACTAGAATGTTT+TGG + Chr3:103408631-103408650 None:intergenic 40.0%
! TGGCCTTTTTGTCAAAGTGT+GGG + Chr3:103408141-103408160 None:intergenic 40.0%
! TGGGTACCCACATTTGAAAT+TGG + Chr3:103409242-103409261 None:intergenic 40.0%
! TTGGAGCACTCTTTGATGAT+AGG + Chr3:103410297-103410316 None:intergenic 40.0%
! TTTTGTTGAAAGAAGGGACC+AGG - Chr3:103411027-103411046 MsG0380018016.01.T01:intron 40.0%
!! AAAGCAGGTTGGTTTCCATT+TGG - Chr3:103411004-103411023 MsG0380018016.01.T01:intron 40.0%
!! TCTTTTAGGGATAGAGTGAC+AGG + Chr3:103408292-103408311 None:intergenic 40.0%
!!! GCAGATTGTTTTTGTTTGCC+AGG + Chr3:103408449-103408468 None:intergenic 40.0%
!!! TTTTGATGGTGTATGGTGGA+AGG - Chr3:103407800-103407819 MsG0380018016.01.T01:CDS 40.0%
AAACATGGCCATATTGGGGA+AGG - Chr3:103410071-103410090 MsG0380018016.01.T01:intron 45.0%
AAGATGCCTAGCATCTCCAA+AGG + Chr3:103409765-103409784 None:intergenic 45.0%
AATGCAAAGGGAAAGCAGGT+TGG - Chr3:103410993-103411012 MsG0380018016.01.T01:intron 45.0%
ACCCATCACCATTGCTCTTA+AGG + Chr3:103409739-103409758 None:intergenic 45.0%
ACGTTATGACAGAATGCGAC+AGG - Chr3:103409790-103409809 MsG0380018016.01.T01:intron 45.0%
ACTAAAAGCTCTTGGCACAC+AGG - Chr3:103407382-103407401 MsG0380018016.01.T01:CDS 45.0%
ACTCCAGCGTCTTATAGCTA+TGG - Chr3:103410143-103410162 MsG0380018016.01.T01:intron 45.0%
ACTTGATCATCTTGAGGGAG+AGG - Chr3:103410318-103410337 MsG0380018016.01.T01:intron 45.0%
AGGCTGTGCTGAAACAGTTT+GGG - Chr3:103406739-103406758 MsG0380018016.01.T01:three_prime_UTR 45.0%
ATCTACACTAGGTGTAGGTG+GGG + Chr3:103410463-103410482 None:intergenic 45.0%
ATGCCAACATATCCTGTGCA+TGG - Chr3:103409656-103409675 MsG0380018016.01.T01:intron 45.0%
CAACCATGCACAGGATATGT+TGG + Chr3:103409662-103409681 None:intergenic 45.0%
CCAAGACCTGAAGTCAAACA+TGG - Chr3:103410056-103410075 MsG0380018016.01.T01:intron 45.0%
CCCATCACCATTGCTCTTAA+GGG + Chr3:103409738-103409757 None:intergenic 45.0%
CCCTTAAGAGCAATGGTGAT+GGG - Chr3:103409735-103409754 MsG0380018016.01.T01:intron 45.0%
CTAAACGCCAGGCAAAAGTA+AGG - Chr3:103409977-103409996 MsG0380018016.01.T01:intron 45.0%
CTTAGTACACGATGAACCTC+TGG - Chr3:103407092-103407111 MsG0380018016.01.T01:intron 45.0%
CTTTACATATCCACACGTGC+AGG - Chr3:103406836-103406855 MsG0380018016.01.T01:three_prime_UTR 45.0%
CTTTCGCACCTTGTGTTCTT+AGG - Chr3:103411284-103411303 MsG0380018016.01.T01:intron 45.0%
GAATGGTGTCTATGCTTCTC+AGG - Chr3:103410518-103410537 MsG0380018016.01.T01:intron 45.0%
GACAGGTGTCAAACAATGGA+TGG - Chr3:103410960-103410979 MsG0380018016.01.T01:CDS 45.0%
GATATTGTCCGTGGAGTAGA+AGG - Chr3:103406976-103406995 MsG0380018016.01.T01:CDS 45.0%
GCAAAAGTAAGGGAAACACC+AGG - Chr3:103409988-103410007 MsG0380018016.01.T01:intron 45.0%
GCAACGCCATATTTATAGGG+TGG + Chr3:103407851-103407870 None:intergenic 45.0%
GCACAAATGGAGAAAGAACG+TGG - Chr3:103407353-103407372 MsG0380018016.01.T01:intron 45.0%
GGCATGCTGTTATCTACACT+AGG + Chr3:103410474-103410493 None:intergenic 45.0%
GTCCCCACACTTTGACAAAA+AGG - Chr3:103408135-103408154 MsG0380018016.01.T01:intron 45.0%
TAGGCTGTGCTGAAACAGTT+TGG - Chr3:103406738-103406757 MsG0380018016.01.T01:three_prime_UTR 45.0%
TAGTTAACCACACCATGCAG+CGG - Chr3:103409133-103409152 MsG0380018016.01.T01:intron 45.0%
TCAAAAACCACACCATGCAC+AGG + Chr3:103407879-103407898 None:intergenic 45.0%
TGACAAAAAGGCCAGCACTA+TGG - Chr3:103408147-103408166 MsG0380018016.01.T01:CDS 45.0%
TGAGGTTATCAAGCCTGGAA+CGG - Chr3:103408373-103408392 MsG0380018016.01.T01:intron 45.0%
! AAGACAGAGCTTGCTCTGTA+TGG - Chr3:103408803-103408822 MsG0380018016.01.T01:intron 45.0%
! ACATGAACCCCATTTGGAGT+TGG + Chr3:103408915-103408934 None:intergenic 45.0%
! ACTTCTTCATATGGTGGAGG+TGG + Chr3:103410498-103410517 None:intergenic 45.0%
! AGCATTGAGGTTATCAAGCC+TGG - Chr3:103408368-103408387 MsG0380018016.01.T01:intron 45.0%
! ATTCCCTCTGGTGCCAATTT+AGG + Chr3:103408838-103408857 None:intergenic 45.0%
! CCAGTTGGTTTCTTGCCATA+GGG - Chr3:103411087-103411106 MsG0380018016.01.T01:intron 45.0%
! CCATGTTTGACTTCAGGTCT+TGG + Chr3:103410059-103410078 None:intergenic 45.0%
! GGCCTTTTTGTCAAAGTGTG+GGG + Chr3:103408140-103408159 None:intergenic 45.0%
! GGTGTGCATTTTACTCATGC+AGG - Chr3:103410658-103410677 MsG0380018016.01.T01:intron 45.0%
! TCCAGTTGGTTTCTTGCCAT+AGG - Chr3:103411086-103411105 MsG0380018016.01.T01:intron 45.0%
! TCTAGTGGTGCTGAGAAGAT+TGG - Chr3:103408637-103408656 MsG0380018016.01.T01:intron 45.0%
! TGCTGAGAAGATTGGTTGCA+AGG - Chr3:103408645-103408664 MsG0380018016.01.T01:intron 45.0%
! TTTACTAGCTTCCTCTACCG+TGG - Chr3:103406685-103406704 MsG0380018016.01.T01:three_prime_UTR 45.0%
!! ATGGACTAGCCCACCTAAAT+TGG - Chr3:103408822-103408841 MsG0380018016.01.T01:intron 45.0%
!! ATTGGTCCCCTTGGATTAGT+CGG + Chr3:103408751-103408770 None:intergenic 45.0%
!! CAAAGGTGTCAGAAGATAGC+AGG - Chr3:103407256-103407275 MsG0380018016.01.T01:CDS 45.0%
!! CTCTTGATAACGTGCTACCA+TGG + Chr3:103407307-103407326 None:intergenic 45.0%
!! CTGGCCTTTTTGTCAAAGTG+TGG + Chr3:103408142-103408161 None:intergenic 45.0%
!! GGCAAGTTGGGACTCTTTTA+GGG + Chr3:103408305-103408324 None:intergenic 45.0%
!! GTGTTTCCCTTACTTTTGCC+TGG + Chr3:103409987-103410006 None:intergenic 45.0%
!! TCAAACAATGGATGGGCTGA+GGG - Chr3:103410968-103410987 MsG0380018016.01.T01:CDS 45.0%
!! TGGCAAGTTGGGACTCTTTT+AGG + Chr3:103408306-103408325 None:intergenic 45.0%
AAGATCCCAAGCCAACCACT+AGG - Chr3:103408889-103408908 MsG0380018016.01.T01:intron 50.0%
ACCACTAGGCCAACTCCAAA+TGG - Chr3:103408903-103408922 MsG0380018016.01.T01:intron 50.0%
AGCTGCTTCCTTCCCCAATA+TGG + Chr3:103410082-103410101 None:intergenic 50.0%
AGTAACCTTTCCTGCACGTG+TGG + Chr3:103406849-103406868 None:intergenic 50.0%
ATCAGAACGGCAGCGTATTG+AGG - Chr3:103410437-103410456 MsG0380018016.01.T01:intron 50.0%
ATCGAACCAGAGACCTTGAG+AGG - Chr3:103408856-103408875 MsG0380018016.01.T01:intron 50.0%
CAAGGACCGACTAATCCAAG+GGG - Chr3:103408742-103408761 MsG0380018016.01.T01:intron 50.0%
CACTAGGCCAACTCCAAATG+GGG - Chr3:103408905-103408924 MsG0380018016.01.T01:intron 50.0%
CATATCCACACGTGCAGGAA+AGG - Chr3:103406841-103406860 MsG0380018016.01.T01:three_prime_UTR 50.0%
CCAAGGACCGACTAATCCAA+GGG - Chr3:103408741-103408760 MsG0380018016.01.T01:intron 50.0%
CCACCTAAATTGGCACCAGA+GGG - Chr3:103408832-103408851 MsG0380018016.01.T01:intron 50.0%
CCACTAGGCCAACTCCAAAT+GGG - Chr3:103408904-103408923 MsG0380018016.01.T01:intron 50.0%
CCCTATGATGTGTGTGTGTG+CGG + Chr3:103407431-103407450 None:intergenic 50.0%
CCCTATGGCAAGAAACCAAC+TGG + Chr3:103411090-103411109 None:intergenic 50.0%
CCGCACACACACACATCATA+GGG - Chr3:103407428-103407447 MsG0380018016.01.T01:CDS 50.0%
CCTATGATGTGTGTGTGTGC+GGG + Chr3:103407430-103407449 None:intergenic 50.0%
CTTCTGTCACTAACCGTTCC+AGG + Chr3:103408389-103408408 None:intergenic 50.0%
GACAACAAGCAACCATGCAC+AGG + Chr3:103409671-103409690 None:intergenic 50.0%
GATGAACCTCTGGCAAGCTA+GGG - Chr3:103407102-103407121 MsG0380018016.01.T01:intron 50.0%
GCCCTTAAGAGCAATGGTGA+TGG - Chr3:103409734-103409753 MsG0380018016.01.T01:intron 50.0%
GGCTGTGCTGAAACAGTTTG+GGG - Chr3:103406740-103406759 MsG0380018016.01.T01:three_prime_UTR 50.0%
GGTGAATGCAAAGGGAAAGC+AGG - Chr3:103410989-103411008 MsG0380018016.01.T01:intron 50.0%
GTGTGCGGGCGCATATATTT+GGG + Chr3:103407416-103407435 None:intergenic 50.0%
TACAAGTGGTGACTGTCCGA+TGG + Chr3:103409371-103409390 None:intergenic 50.0%
TCCAAGGACCGACTAATCCA+AGG - Chr3:103408740-103408759 MsG0380018016.01.T01:intron 50.0%
TGCAGAGCCCTTAAGAGCAA+TGG - Chr3:103409728-103409747 MsG0380018016.01.T01:intron 50.0%
TGTGTGCGGGCGCATATATT+TGG + Chr3:103407417-103407436 None:intergenic 50.0%
TTTGCTCCTCTCAAGGTCTC+TGG + Chr3:103408865-103408884 None:intergenic 50.0%
! ACCTCACATGCCGGTTATGT+GGG - Chr3:103406563-103406582 MsG0380018016.01.T01:three_prime_UTR 50.0%
! CCTCTGGTGCCAATTTAGGT+GGG + Chr3:103408834-103408853 None:intergenic 50.0%
! CTTGGAGTTTGCTCCTCTCA+AGG + Chr3:103408872-103408891 None:intergenic 50.0%
! TCTTCATATGGTGGAGGTGG+TGG + Chr3:103410495-103410514 None:intergenic 50.0%
! TGATGGTGTATGGTGGAAGG+TGG - Chr3:103407803-103407822 MsG0380018016.01.T01:CDS 50.0%
! TGCTGAAACAGTTTGGGGCT+GGG - Chr3:103406745-103406764 MsG0380018016.01.T01:three_prime_UTR 50.0%
! TTTGGAGTTGGCCTAGTGGT+TGG + Chr3:103408903-103408922 None:intergenic 50.0%
!! AATGGTGATGGGTGCTCCTT+TGG - Chr3:103409746-103409765 MsG0380018016.01.T01:intron 50.0%
!! GTCAAACAATGGATGGGCTG+AGG - Chr3:103410967-103410986 MsG0380018016.01.T01:CDS 50.0%
!! TAGTGGTTGGCTTGGGATCT+TGG + Chr3:103408890-103408909 None:intergenic 50.0%
CATAACCGGCATGTGAGGTG+AGG + Chr3:103406562-103406581 None:intergenic 55.0%
CCCACCTAAATTGGCACCAG+AGG - Chr3:103408831-103408850 MsG0380018016.01.T01:intron 55.0%
CCCGCACACACACACATCAT+AGG - Chr3:103407427-103407446 MsG0380018016.01.T01:CDS 55.0%
CGATGAACCTCTGGCAAGCT+AGG - Chr3:103407101-103407120 MsG0380018016.01.T01:intron 55.0%
GGAAGCAGCTGCAGCAATGA+CGG - Chr3:103410092-103410111 MsG0380018016.01.T01:intron 55.0%
GGGCTGAGGGTGAATGCAAA+GGG - Chr3:103410981-103411000 MsG0380018016.01.T01:intron 55.0%
TGCACATGCCCGTGCACAAA+TGG - Chr3:103407340-103407359 MsG0380018016.01.T01:intron 55.0%
TGGGCTGAGGGTGAATGCAA+AGG - Chr3:103410980-103410999 MsG0380018016.01.T01:CDS 55.0%
! ACAGTTTGGGGCTGGGGATA+TGG - Chr3:103406752-103406771 MsG0380018016.01.T01:three_prime_UTR 55.0%
! AGTTGGCCTAGTGGTTGGCT+TGG + Chr3:103408898-103408917 None:intergenic 55.0%
! CACCTCACATGCCGGTTATG+TGG - Chr3:103406562-103406581 MsG0380018016.01.T01:three_prime_UTR 55.0%
! CCCATTTGGAGTTGGCCTAG+TGG + Chr3:103408907-103408926 None:intergenic 55.0%
! CCCTCTGGTGCCAATTTAGG+TGG + Chr3:103408835-103408854 None:intergenic 55.0%
! CCTCACATGCCGGTTATGTG+GGG - Chr3:103406564-103406583 MsG0380018016.01.T01:three_prime_UTR 55.0%
! GCTGAAACAGTTTGGGGCTG+GGG - Chr3:103406746-103406765 MsG0380018016.01.T01:three_prime_UTR 55.0%
! GGTGCTCCTTTGGAGATGCT+AGG - Chr3:103409756-103409775 MsG0380018016.01.T01:intron 55.0%
! GTCTCTGGTTCGATTCCCTC+TGG + Chr3:103408850-103408869 None:intergenic 55.0%
! GTGCTGAAACAGTTTGGGGC+TGG - Chr3:103406744-103406763 MsG0380018016.01.T01:three_prime_UTR 55.0%
! TACACTCCCTAGCTTGCCAG+AGG + Chr3:103407111-103407130 None:intergenic 55.0%
!! CCCTTGGATTAGTCGGTCCT+TGG + Chr3:103408744-103408763 None:intergenic 55.0%
!! GGATTAGTCGGTCCTTGGAC+TGG + Chr3:103408739-103408758 None:intergenic 55.0%
!! GTTGGCCTAGTGGTTGGCTT+GGG + Chr3:103408897-103408916 None:intergenic 55.0%
AAAATCCCACGGCCGCTGCA+TGG + Chr3:103409148-103409167 None:intergenic 60.0%
AGCTGCAGCAATGACGGCTG+TGG - Chr3:103410098-103410117 MsG0380018016.01.T01:intron 60.0%
CCACCTTGCTTGCAAGGACC+TGG + Chr3:103411048-103411067 None:intergenic 60.0%
CCAGGTCCTTGCAAGCAAGG+TGG - Chr3:103411045-103411064 MsG0380018016.01.T01:intron 60.0%
CCCCACATAACCGGCATGTG+AGG + Chr3:103406567-103406586 None:intergenic 60.0%
CTTCCGCCACCTTGCTTGCA+AGG + Chr3:103411054-103411073 None:intergenic 60.0%
GCAGTCCTCACCTCACATGC+CGG - Chr3:103406554-103406573 MsG0380018016.01.T01:three_prime_UTR 60.0%
GCATAGGCCTGTGCATGGTG+TGG - Chr3:103407869-103407888 MsG0380018016.01.T01:CDS 60.0%
GCGACAGGATGCTGAAGCTC+AGG - Chr3:103409805-103409824 MsG0380018016.01.T01:intron 60.0%
GCGTTGCATAGGCCTGTGCA+TGG - Chr3:103407864-103407883 MsG0380018016.01.T01:CDS 60.0%
GGACCAGGTCCTTGCAAGCA+AGG - Chr3:103411042-103411061 MsG0380018016.01.T01:intron 60.0%
GGGCTGGGGATATGGAGGTT+CGG - Chr3:103406760-103406779 MsG0380018016.01.T01:three_prime_UTR 60.0%
GGTCCTTGCAAGCAAGGTGG+CGG - Chr3:103411048-103411067 MsG0380018016.01.T01:intron 60.0%
! CTGTGGAAGCACAGCAGCAG+AGG - Chr3:103410115-103410134 MsG0380018016.01.T01:intron 60.0%
! GTTTGGGGCTGGGGATATGG+AGG - Chr3:103406755-103406774 MsG0380018016.01.T01:three_prime_UTR 60.0%
AAATGGAGCCCCGCCGCAAG+TGG + Chr3:103408782-103408801 None:intergenic 65.0%
AATGGAGCCCCGCCGCAAGT+GGG + Chr3:103408781-103408800 None:intergenic 65.0%
CCAATCCCACCGCCCACTTG+CGG - Chr3:103408766-103408785 MsG0380018016.01.T01:intron 65.0%
ACCACACCATGCAGCGGCCG+TGG - Chr3:103409139-103409158 MsG0380018016.01.T01:intron 70.0%
ATCCCACCGCCCACTTGCGG+CGG - Chr3:103408769-103408788 MsG0380018016.01.T01:intron 70.0%
CCACACCATGCAGCGGCCGT+GGG - Chr3:103409140-103409159 MsG0380018016.01.T01:intron 70.0%
CCGCAAGTGGGCGGTGGGAT+TGG + Chr3:103408769-103408788 None:intergenic 70.0%
!! GGCGGTGGGATTGGTCCCCT+TGG + Chr3:103408760-103408779 None:intergenic 70.0%
CCCACGGCCGCTGCATGGTG+TGG + Chr3:103409143-103409162 None:intergenic 75.0%
TCCCACCGCCCACTTGCGGC+GGG - Chr3:103408770-103408789 MsG0380018016.01.T01:intron 75.0%
! CCCACCGCCCACTTGCGGCG+GGG - Chr3:103408771-103408790 MsG0380018016.01.T01:intron 80.0%
! CCCCGCCGCAAGTGGGCGGT+GGG + Chr3:103408774-103408793 None:intergenic 80.0%
! GGAGCCCCGCCGCAAGTGGG+CGG + Chr3:103408778-103408797 None:intergenic 80.0%
! GCCCCGCCGCAAGTGGGCGG+TGG + Chr3:103408775-103408794 None:intergenic 85.0%
Chromosome Type Strat End Strand Name
Chr3 gene 103406546 103411417 103406546 ID=MsG0380018016.01;Name=MsG0380018016.01
Chr3 mRNA 103406546 103411417 103406546 ID=MsG0380018016.01.T01;Parent=MsG0380018016.01;Name=MsG0380018016.01.T01;_AED=0.33;_eAED=0.33;_QI=0|0.57|0.87|0.87|1|1|8|336|292
Chr3 exon 103406546 103406998 103406546 ID=MsG0380018016.01.T01:exon:18485;Parent=MsG0380018016.01.T01
Chr3 exon 103407209 103407283 103407209 ID=MsG0380018016.01.T01:exon:18484;Parent=MsG0380018016.01.T01
Chr3 exon 103407379 103407531 103407379 ID=MsG0380018016.01.T01:exon:18483;Parent=MsG0380018016.01.T01
Chr3 exon 103407799 103407999 103407799 ID=MsG0380018016.01.T01:exon:18482;Parent=MsG0380018016.01.T01
Chr3 exon 103408137 103408237 103408137 ID=MsG0380018016.01.T01:exon:18481;Parent=MsG0380018016.01.T01
Chr3 exon 103410930 103410999 103410930 ID=MsG0380018016.01.T01:exon:18480;Parent=MsG0380018016.01.T01
Chr3 exon 103411101 103411222 103411101 ID=MsG0380018016.01.T01:exon:18479;Parent=MsG0380018016.01.T01
Chr3 exon 103411378 103411417 103411378 ID=MsG0380018016.01.T01:exon:18478;Parent=MsG0380018016.01.T01
Chr3 CDS 103411378 103411417 103411378 ID=MsG0380018016.01.T01:cds;Parent=MsG0380018016.01.T01
Chr3 CDS 103411101 103411222 103411101 ID=MsG0380018016.01.T01:cds;Parent=MsG0380018016.01.T01
Chr3 CDS 103410930 103410999 103410930 ID=MsG0380018016.01.T01:cds;Parent=MsG0380018016.01.T01
Chr3 CDS 103408137 103408237 103408137 ID=MsG0380018016.01.T01:cds;Parent=MsG0380018016.01.T01
Chr3 CDS 103407799 103407999 103407799 ID=MsG0380018016.01.T01:cds;Parent=MsG0380018016.01.T01
Chr3 CDS 103407379 103407531 103407379 ID=MsG0380018016.01.T01:cds;Parent=MsG0380018016.01.T01
Chr3 CDS 103407209 103407283 103407209 ID=MsG0380018016.01.T01:cds;Parent=MsG0380018016.01.T01
Chr3 CDS 103406882 103406998 103406882 ID=MsG0380018016.01.T01:cds;Parent=MsG0380018016.01.T01
Chr3 three_prime_UTR 103406546 103406881 103406546 ID=MsG0380018016.01.T01:three_prime_utr;Parent=MsG0380018016.01.T01
Gene Sequence

>MsG0380018016.01.T01

ATGTGGGGGCAGTCCTCACCTCACATGCCGGTTATGTGGGGCTGTGCTGAAACAGTTTGGGGCTGGGGATATGGAGGTTCGGATAATATGGTTACTGACGAGGCAGAGCTTCAACAGCATCAGAAACTTGAGAAGCTTTACATATCCACACGTGCAGGAAAGCATTATCAAAGGGATATTGTCCGTGGAGTAGAAGGTTACATTGTTACTGGATCAAAGCAAGTTGAAATAGGTTGCAGAGCCCTTAAGAGCAATGGTGATGGGTGCTCCTTTGGAGATGCTAGGCATCTTGCTCAACGTTATGACAGAATGCGACAGGATGCTGAAGCTCAGGCTATTGAAGTTTCTAAACGCCAGGCAAAAGTAAGGGAAACACCAGGCAATGCTGAAAATATTATGAAACTGGAAGCAGCTGAAACAAAGCTCCAAGACCTGAAGTCAAACATGGCCATATTGGGGAAGGAAGCAGCTGCAGCAATGACGGCTGTGGAAGCACAGCAGCAGAGGTTAACACTCCAGCGTCTTATAGCTATGATGATATCAGAACGGCAGCGTATTGAGGCCCCACCTACACCTAGTGTAGATAACAGCATGCCACCACCTCCACCATATGAAGAAGTGAATGGTGTCTATGCTTCTCAGGAACATAATGGCATAACTGACAGTATGGGTTACTTCTTAGGAGAGGTTTTGTTTCCCTATCATGCTGAGTCTGAAGTTGAACTGAATTTATCAGTTGGGGATTATATTGTCATTCGAAAGGTGTCAAACAATGGATGGGCTGAGGGTGAATGCAAAGGGAAAGCAGGTTGGTTTCCATTTGGTTTTGTTGAAAGAAGGGACCAGGTCCTTGCAAGCAAGGTGGCGGAAGTGTTTTGA
Protein sequence

>MsG0380018016.01.T01

MWGQSSPHMPVMWGCAETVWGWGYGGSDNMVTDEAELQQHQKLEKLYISTRAGKHYQRDIVRGVEGYIVTGSKQVEIGCRALKSNGDGCSFGDARHLAQRYDRMRQDAEAQAIEVSKRQAKVRETPGNAENIMKLEAAETKLQDLKSNMAILGKEAAAAMTAVEAQQQRLTLQRLIAMMISERQRIEAPPTPSVDNSMPPPPPYEEVNGVYASQEHNGITDSMGYFLGEVLFPYHAESEVELNLSVGDYIVIRKVSNNGWAEGECKGKAGWFPFGFVERRDQVLASKVAEVF*