AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380018043.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380018043.01.T01 MTR_3g117680 59.836 244 77 7 14 240 15 254 4.62e-81 244
MsG0380018043.01.T01 MTR_3g117680 59.836 244 77 7 14 240 123 362 7.34e-79 242
MsG0380018043.01.T01 MTR_3g117680 72.951 122 26 3 1 117 1 120 1.84e-51 171
MsG0380018043.01.T01 MTR_4g075610 57.436 195 58 6 69 240 178 370 2.87e-57 187
MsG0380018043.01.T01 MTR_4g075610 53.659 123 47 3 4 117 7 128 3.96e-34 126
MsG0380018043.01.T01 MTR_3g117680 72.951 122 26 3 1 117 1 120 3.90e-52 170
MsG0380018043.01.T01 MTR_3g117680 47.727 132 61 4 14 141 123 250 5.52e-26 102
MsG0380018043.01.T01 MTR_3g117680 72.951 122 26 3 1 117 1 120 7.88e-52 171
MsG0380018043.01.T01 MTR_3g117680 52.410 166 64 5 14 168 123 284 1.49e-40 141
MsG0380018043.01.T01 MTR_4g075610 53.659 123 47 3 4 117 7 128 1.02e-34 125
MsG0380018043.01.T01 MTR_4g075610 82.000 50 9 0 92 141 211 260 2.11e-19 85.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380018043.01.T01 AT4G38810 54.601 163 59 4 92 241 98 258 3.99e-46 155
MsG0380018043.01.T01 AT4G38810 54.601 163 59 4 92 241 208 368 6.51e-45 155
MsG0380018043.01.T01 AT4G38810 35.556 225 124 7 12 220 13 232 5.69e-31 118

Find 51 sgRNAs with CRISPR-Local

Find 264 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAATGACAGGCTTCTCTTTA+AGG 0.119543 3:-103648871 None:intergenic
TTCATTATTCACCGTCTTAA+AGG 0.134887 3:-103649586 None:intergenic
CTCCTCCTCCGTTCCTCTTC+TGG 0.176059 3:-103645761 None:intergenic
TGCTCTTGGTTTGCCTGCTC+AGG 0.235368 3:+103645938 MsG0380018043.01.T01:CDS
TCTTGATGGCTCCAACATTA+TGG 0.250150 3:+103645791 MsG0380018043.01.T01:CDS
CCTTTCTAATTCAAACTTGT+TGG 0.303318 3:-103648945 None:intergenic
AGAACAAGAATAATATTAGA+TGG 0.349741 3:-103649762 None:intergenic
TGACCAGCCATGTCGTTAAT+CGG 0.385714 3:-103649805 None:intergenic
CCAACAAGTTTGAATTAGAA+AGG 0.387070 3:+103648945 MsG0380018043.01.T01:CDS
AATATCAAAGGATTACTTGC+AGG 0.400730 3:+103649100 MsG0380018043.01.T01:CDS
CTCTGATCACATCTACTATC+AGG 0.408189 3:+103645974 MsG0380018043.01.T01:CDS
GCTCTTGGTTTGCCTGCTCA+GGG 0.416449 3:+103645939 MsG0380018043.01.T01:CDS
AGTGTAGAAGATGAGCTTAA+AGG 0.417154 3:-103649732 None:intergenic
TGGCTCCAACATTATGGAAT+TGG 0.417894 3:+103645797 MsG0380018043.01.T01:CDS
GCTGACATCGGTGCTGCTCT+TGG 0.421869 3:+103645924 MsG0380018043.01.T01:CDS
AGTATCATGTTGCAGTTAGA+AGG 0.429901 3:+103649672 MsG0380018043.01.T01:CDS
ATCGGGCTCAAGCTCCTTCA+AGG 0.436642 3:-103645898 None:intergenic
TATCCAGCTCATGAAATTTG+TGG 0.442680 3:-103645854 None:intergenic
TCCAACCAATTCCATAATGT+TGG 0.447482 3:-103645802 None:intergenic
TTTGGAAGAATTCAAGAAAG+TGG 0.460032 3:+103648829 MsG0380018043.01.T01:CDS
CAGAAGAGGAACGGAGGAGG+AGG 0.464641 3:+103645762 MsG0380018043.01.T01:CDS
GCACCGATGTCAGCAACATC+GGG 0.476455 3:-103645915 None:intergenic
CAAATTTCATGAGCTGGATA+AGG 0.483471 3:+103645857 MsG0380018043.01.T01:CDS
GGAGGAGGAGAGGTTCTTGA+TGG 0.487880 3:+103645777 MsG0380018043.01.T01:CDS
TAGTAGATGTGATCAGAGTC+AGG 0.489937 3:-103645969 None:intergenic
GCAAGGATTCAACAAGTTTG+TGG 0.490981 3:+103645830 MsG0380018043.01.T01:CDS
GGACCACAAATTTCATGAGC+TGG 0.499403 3:+103645851 MsG0380018043.01.T01:CDS
TCAGGAGTAGTGCCCTGAGC+AGG 0.508149 3:-103645951 None:intergenic
AGCACCGATGTCAGCAACAT+CGG 0.509197 3:-103645916 None:intergenic
AACCAGAAGAGGAACGGAGG+AGG 0.517853 3:+103645759 MsG0380018043.01.T01:CDS
AGATGGTAAGCTCTCCTTGA+AGG 0.518287 3:+103645884 MsG0380018043.01.T01:CDS
TCACTGTGAGCTACAATGAC+AGG 0.521245 3:-103648884 None:intergenic
ATCTGCTGGTTACCTCCAGT+TGG 0.536110 3:+103649145 MsG0380018043.01.T01:CDS
GATGTGGTGTCTCCATCTGC+TGG 0.546691 3:+103649131 MsG0380018043.01.T01:CDS
TCCAACATTATGGAATTGGT+TGG 0.565142 3:+103645801 MsG0380018043.01.T01:CDS
GAGGAACGGAGGAGGAGGAG+AGG 0.567465 3:+103645767 MsG0380018043.01.T01:CDS
GAACAAGAATAATATTAGAT+GGG 0.570165 3:-103649761 None:intergenic
GAATTGGTTGGAAACGAGCA+AGG 0.589020 3:+103645813 MsG0380018043.01.T01:CDS
TATTAGTGAAGCCTTTAAGA+CGG 0.589119 3:+103649575 MsG0380018043.01.T01:CDS
GAATCTGCAAAAGATCGAAA+CGG 0.591281 3:+103649074 MsG0380018043.01.T01:CDS
CTGATTTGAAGAAACAGCAT+GGG 0.606697 3:-103649699 None:intergenic
AGTAGATGGAAAACCAGAAG+AGG 0.616094 3:+103645748 None:intergenic
ACTGATTTGAAGAAACAGCA+TGG 0.620820 3:-103649700 None:intergenic
AACTGGAGGTAACCAGCAGA+TGG 0.621484 3:-103649143 None:intergenic
CAAGAAAGTGGCATTGAGTG+TGG 0.640256 3:+103648841 MsG0380018043.01.T01:CDS
GAGCCCGATGTTGCTGACAT+CGG 0.641969 3:+103645912 MsG0380018043.01.T01:CDS
ATGGAAAACCAGAAGAGGAA+CGG 0.642985 3:+103645753 MsG0380018043.01.T01:CDS
TCTTCAATTGCACCAACTGG+AGG 0.650559 3:-103649157 None:intergenic
GAAAACCAGAAGAGGAACGG+AGG 0.663724 3:+103645756 MsG0380018043.01.T01:CDS
GAGCTGGATAAGGACAGAGA+TGG 0.674340 3:+103645867 MsG0380018043.01.T01:CDS
CTTGCAGGTGACACTAGATG+TGG 0.729256 3:+103649115 MsG0380018043.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CAAAAATATAAATAATCTTA+AGG - Chr3:103648388-103648407 None:intergenic 10.0%
!! TAATTAATTTATCAATGTAT+TGG + Chr3:103646173-103646192 MsG0380018043.01.T01:intron 10.0%
!!! AAAATTTTAATTGAAATACT+GGG + Chr3:103649648-103649667 MsG0380018043.01.T01:CDS 10.0%
!! AAACATATATATTACCAATA+TGG - Chr3:103646740-103646759 None:intergenic 15.0%
!! AACATATATATTACCAATAT+GGG - Chr3:103646739-103646758 None:intergenic 15.0%
!! ACAGATATATTAATAATCTT+AGG - Chr3:103647239-103647258 None:intergenic 15.0%
!! ATTTATTATTCAACTCAAAA+TGG - Chr3:103647698-103647717 None:intergenic 15.0%
!! CAGATATATTAATAATCTTA+GGG - Chr3:103647238-103647257 None:intergenic 15.0%
!! TTTATTATTCAACTCAAAAT+GGG - Chr3:103647697-103647716 None:intergenic 15.0%
!!! AAATTTTAATTGAAATACTG+GGG + Chr3:103649649-103649668 MsG0380018043.01.T01:CDS 15.0%
!!! GAAAATTTTAATTGAAATAC+TGG + Chr3:103649647-103649666 MsG0380018043.01.T01:CDS 15.0%
!! AGAACAAGAATAATATTAGA+TGG - Chr3:103649765-103649784 None:intergenic 20.0%
!! ATTAATTATCCATGATAACA+TGG + Chr3:103646439-103646458 MsG0380018043.01.T01:intron 20.0%
!! GAACAAGAATAAAAATTTGA+TGG + Chr3:103648540-103648559 MsG0380018043.01.T01:intron 20.0%
!! GAACAAGAATAATATTAGAT+GGG - Chr3:103649764-103649783 None:intergenic 20.0%
!! GATAACCTATATCATTTATA+CGG - Chr3:103647202-103647221 None:intergenic 20.0%
!! GTGATATAAACTTATAAAGT+TGG + Chr3:103646877-103646896 MsG0380018043.01.T01:intron 20.0%
!! GTTATCATGGATAATTAATT+AGG - Chr3:103646438-103646457 None:intergenic 20.0%
!! TATTGATCTTGAAAATACAA+TGG - Chr3:103648432-103648451 None:intergenic 20.0%
!! TCTGAATATGTATGTTAAAA+TGG + Chr3:103647422-103647441 MsG0380018043.01.T01:intron 20.0%
!! TTATTAGAGTGATAAAAAGT+TGG + Chr3:103647971-103647990 MsG0380018043.01.T01:intron 20.0%
!! TTATTATTCAACTCAAAATG+GGG - Chr3:103647696-103647715 None:intergenic 20.0%
!!! ATTTTCCGTATAAATGATAT+AGG + Chr3:103647194-103647213 MsG0380018043.01.T01:intron 20.0%
!!! CAATTTCTAAAAATTAAGAC+TGG + Chr3:103647314-103647333 MsG0380018043.01.T01:intron 20.0%
!!! CACTTTGATATATTTTTTTG+TGG + Chr3:103649008-103649027 MsG0380018043.01.T01:intron 20.0%
! AAGGCAAATTGATCTTTAAA+TGG + Chr3:103648075-103648094 MsG0380018043.01.T01:intron 25.0%
! AATAAAAAGCAAAATTGAGC+AGG - Chr3:103646506-103646525 None:intergenic 25.0%
! AATCTTAGGGAAAACAATAT+AGG - Chr3:103647225-103647244 None:intergenic 25.0%
! AATTTAATCAGACATTGTGA+TGG - Chr3:103649293-103649312 None:intergenic 25.0%
! AGCTTAAAGAAAAAACACAA+AGG - Chr3:103646227-103646246 None:intergenic 25.0%
! ATAAAAAGCAAAATTGAGCA+GGG - Chr3:103646505-103646524 None:intergenic 25.0%
! ATAAAAGATACCTTAGAAAC+AGG + Chr3:103648160-103648179 MsG0380018043.01.T01:intron 25.0%
! ATATCTAGGCAAAACATTAT+AGG - Chr3:103647617-103647636 None:intergenic 25.0%
! ATCTTAGGGAAAACAATATA+GGG - Chr3:103647224-103647243 None:intergenic 25.0%
! ATCTTTAAATGGAATCCTTT+GGG + Chr3:103648086-103648105 MsG0380018043.01.T01:intron 25.0%
! CATGGATAATTAATTAGGAT+AGG - Chr3:103646433-103646452 None:intergenic 25.0%
! CTAACCAATATGGTAAATAT+GGG + Chr3:103648129-103648148 MsG0380018043.01.T01:intron 25.0%
! GCTCATAGATAATTGATAAA+TGG + Chr3:103647106-103647125 MsG0380018043.01.T01:intron 25.0%
! GTCAAAAATCATAATTACAG+TGG - Chr3:103646610-103646629 None:intergenic 25.0%
! GTCATTTCTGTATAATAACT+TGG - Chr3:103648738-103648757 None:intergenic 25.0%
! TAAAAGATACCTTAGAAACA+GGG + Chr3:103648161-103648180 MsG0380018043.01.T01:intron 25.0%
! TACTGAATTTGAAAATGCAA+TGG - Chr3:103647286-103647305 None:intergenic 25.0%
! TACTTTATGCTACAATATCT+AGG - Chr3:103647631-103647650 None:intergenic 25.0%
! TATCTAGGCAAAACATTATA+GGG - Chr3:103647616-103647635 None:intergenic 25.0%
! TATGTATGTTAAAATGGATG+TGG + Chr3:103647428-103647447 MsG0380018043.01.T01:intron 25.0%
! TCAATGAGATATTTGATGAA+TGG + Chr3:103648215-103648234 MsG0380018043.01.T01:intron 25.0%
!! ATATACTGACTAATATGCAT+TGG - Chr3:103649198-103649217 None:intergenic 25.0%
!! CTTCAAGTTCAAAGATTAAA+CGG - Chr3:103646805-103646824 None:intergenic 25.0%
!! GAAAATCTGATTTGATCAAA+TGG - Chr3:103647180-103647199 None:intergenic 25.0%
!!! TCATGTGCAGAAATTTTAAT+AGG - Chr3:103648490-103648509 None:intergenic 25.0%
!!! TCTAAGGTATCTTTTATGAT+GGG - Chr3:103648157-103648176 None:intergenic 25.0%
!!! TGTGTTTTTTCTTTAAGCTT+TGG + Chr3:103646228-103646247 MsG0380018043.01.T01:intron 25.0%
!!! TTCTAAGGTATCTTTTATGA+TGG - Chr3:103648158-103648177 None:intergenic 25.0%
!!! TTTGATTTTACAGATGGATA+AGG + Chr3:103649551-103649570 MsG0380018043.01.T01:intron 25.0%
!!! TTTTTCTTTAAGCTTTGGTT+TGG + Chr3:103646233-103646252 MsG0380018043.01.T01:intron 25.0%
AACAGGGAGAAAAAAAATAG+AGG + Chr3:103648177-103648196 MsG0380018043.01.T01:intron 30.0%
AACCACATACACAAAAAGAA+AGG - Chr3:103646275-103646294 None:intergenic 30.0%
AATATCAAAGGATTACTTGC+AGG + Chr3:103649100-103649119 MsG0380018043.01.T01:CDS 30.0%
ACCACATACACAAAAAGAAA+GGG - Chr3:103646274-103646293 None:intergenic 30.0%
AGTATATGCTAAACCATTGA+CGG + Chr3:103646773-103646792 MsG0380018043.01.T01:intron 30.0%
ATCTAGGCAAAACATTATAG+GGG - Chr3:103647615-103647634 None:intergenic 30.0%
ATGTGATACTTTATAGAAGC+TGG + Chr3:103646395-103646414 MsG0380018043.01.T01:intron 30.0%
ATTATCCATGATAACATGGT+CGG + Chr3:103646443-103646462 MsG0380018043.01.T01:intron 30.0%
ATTTCAGTCGCAATATTTGT+TGG - Chr3:103649363-103649382 None:intergenic 30.0%
CCAACAAGTTTGAATTAGAA+AGG + Chr3:103648945-103648964 MsG0380018043.01.T01:CDS 30.0%
CCTAACCAATATGGTAAATA+TGG + Chr3:103648128-103648147 MsG0380018043.01.T01:intron 30.0%
CCTTTCTAATTCAAACTTGT+TGG - Chr3:103648948-103648967 None:intergenic 30.0%
GACACACTAATGAAAAAAAC+CGG - Chr3:103646715-103646734 None:intergenic 30.0%
GATCTTTAAATGGAATCCTT+TGG + Chr3:103648085-103648104 MsG0380018043.01.T01:intron 30.0%
TACAGATTGTATGATTGCAT+AGG - Chr3:103648265-103648284 None:intergenic 30.0%
TCGAAACGGAAAAATATCAA+AGG + Chr3:103649088-103649107 MsG0380018043.01.T01:CDS 30.0%
TGTCACTCATGTGAAAAAAT+CGG - Chr3:103647868-103647887 None:intergenic 30.0%
TTCATGATGACAGTAAACTT+AGG - Chr3:103648242-103648261 None:intergenic 30.0%
TTCATTATTCACCGTCTTAA+AGG - Chr3:103649589-103649608 None:intergenic 30.0%
TTCCATGAGATATCTATCTA+GGG + Chr3:103647465-103647484 MsG0380018043.01.T01:intron 30.0%
TTTAAGCCGTAATTATACCT+TGG - Chr3:103647797-103647816 None:intergenic 30.0%
TTTCAGTCGCAATATTTGTT+GGG - Chr3:103649362-103649381 None:intergenic 30.0%
TTTCCATGAGATATCTATCT+AGG + Chr3:103647464-103647483 MsG0380018043.01.T01:intron 30.0%
TTTGGAAGAATTCAAGAAAG+TGG + Chr3:103648829-103648848 MsG0380018043.01.T01:CDS 30.0%
! ATATCAATCTGTCTCCATTT+TGG + Chr3:103649250-103649269 MsG0380018043.01.T01:intron 30.0%
! ATATCTGAAGTTAGTACTTG+TGG + Chr3:103646950-103646969 MsG0380018043.01.T01:intron 30.0%
! CCATATTTACCATATTGGTT+AGG - Chr3:103648131-103648150 None:intergenic 30.0%
! TAGAGATCAAGAGACATTTT+TGG + Chr3:103648811-103648830 MsG0380018043.01.T01:CDS 30.0%
! TATCTGAAGTTAGTACTTGT+GGG + Chr3:103646951-103646970 MsG0380018043.01.T01:intron 30.0%
! TATTAGTGAAGCCTTTAAGA+CGG + Chr3:103649575-103649594 MsG0380018043.01.T01:CDS 30.0%
!! AGATCTTCTTGAGTTTGTTA+AGG + Chr3:103648711-103648730 MsG0380018043.01.T01:intron 30.0%
!! ATTTGATGGACTTGTTGTAT+AGG + Chr3:103648554-103648573 MsG0380018043.01.T01:intron 30.0%
!! CGAGAGCTCATATTTTTATT+CGG - Chr3:103648354-103648373 None:intergenic 30.0%
!! GATGTGTTTGATTTTACAGA+TGG + Chr3:103649545-103649564 MsG0380018043.01.T01:intron 30.0%
!! GTTTTGAATCTGAGAGAATA+TGG - Chr3:103648763-103648782 None:intergenic 30.0%
!!! TTTTTTTCTCCCTGTTTCTA+AGG - Chr3:103648173-103648192 None:intergenic 30.0%
AAAGGAGATTGGCAGAAAAA+TGG - Chr3:103646530-103646549 None:intergenic 35.0%
AAAGTGAATTAACAGCTCAG+TGG - Chr3:103648994-103649013 None:intergenic 35.0%
AATACCTTGGAGTTTAGTTG+AGG - Chr3:103646632-103646651 None:intergenic 35.0%
AATTAAGACTGGAAGACGTT+TGG + Chr3:103647325-103647344 MsG0380018043.01.T01:intron 35.0%
AATTAGGATAGGACACTTCT+GGG - Chr3:103646422-103646441 None:intergenic 35.0%
ACACATTTGCTTTATCCCAA+AGG - Chr3:103648104-103648123 None:intergenic 35.0%
ACATGGTAAAGACGCATAAA+AGG + Chr3:103647027-103647046 MsG0380018043.01.T01:intron 35.0%
AGTATCATGTTGCAGTTAGA+AGG + Chr3:103649672-103649691 MsG0380018043.01.T01:CDS 35.0%
AGTCTCATAGAGGATTCAAA+TGG - Chr3:103647820-103647839 None:intergenic 35.0%
AGTGTAGAAGATGAGCTTAA+AGG - Chr3:103649735-103649754 None:intergenic 35.0%
ATTGTTATACTCTGCATGGA+CGG + Chr3:103648685-103648704 MsG0380018043.01.T01:intron 35.0%
CAAATTTCATGAGCTGGATA+AGG + Chr3:103645857-103645876 MsG0380018043.01.T01:CDS 35.0%
CCACAGAAAGACAAAAATAG+AGG + Chr3:103647058-103647077 MsG0380018043.01.T01:intron 35.0%
CCACATACACAAAAAGAAAG+GGG - Chr3:103646273-103646292 None:intergenic 35.0%
CCATGCAGAGTATAACAATT+GGG - Chr3:103648684-103648703 None:intergenic 35.0%
CCTTTGAATCTGTTCCAAAA+TGG - Chr3:103649267-103649286 None:intergenic 35.0%
GAATCTGCAAAAGATCGAAA+CGG + Chr3:103649074-103649093 MsG0380018043.01.T01:CDS 35.0%
GGACACGCATAAATTATTGA+AGG - Chr3:103648469-103648488 None:intergenic 35.0%
GGTTCCCATATTTACCATAT+TGG - Chr3:103648136-103648155 None:intergenic 35.0%
GTCTGCTATCAAGTTAGTAA+TGG + Chr3:103646899-103646918 MsG0380018043.01.T01:intron 35.0%
GTGTTGAATGAATTCACTCA+TGG + Chr3:103648576-103648595 MsG0380018043.01.T01:intron 35.0%
GTTCTCTCAGACATTCTATT+AGG + Chr3:103648635-103648654 MsG0380018043.01.T01:intron 35.0%
TAAGTGGTATGAGTCATCAA+TGG - Chr3:103647926-103647945 None:intergenic 35.0%
TAATTAGGATAGGACACTTC+TGG - Chr3:103646423-103646442 None:intergenic 35.0%
TACAAGACAAAAGGGACTTT+GGG - Chr3:103649457-103649476 None:intergenic 35.0%
TAGACAAGTGTCTGTTATGA+AGG + Chr3:103647560-103647579 MsG0380018043.01.T01:intron 35.0%
TATCCAGCTCATGAAATTTG+TGG - Chr3:103645857-103645876 None:intergenic 35.0%
TATGAGACTAATCCTCAAGT+CGG + Chr3:103647831-103647850 MsG0380018043.01.T01:intron 35.0%
TCCAACATTATGGAATTGGT+TGG + Chr3:103645801-103645820 MsG0380018043.01.T01:CDS 35.0%
TCCAACCAATTCCATAATGT+TGG - Chr3:103645805-103645824 None:intergenic 35.0%
TCCATATATGATGTTTGCGA+CGG + Chr3:103649221-103649240 MsG0380018043.01.T01:intron 35.0%
TCCATGAGATATCTATCTAG+GGG + Chr3:103647466-103647485 MsG0380018043.01.T01:intron 35.0%
TCCATGCAGAGTATAACAAT+TGG - Chr3:103648685-103648704 None:intergenic 35.0%
TCTTCTTCTTCTTCTTCTCT+AGG + Chr3:103646584-103646603 MsG0380018043.01.T01:intron 35.0%
TGTGTCTTACCTAACCAATA+TGG + Chr3:103648119-103648138 MsG0380018043.01.T01:intron 35.0%
TTATGCGTCTTTACCATGTT+TGG - Chr3:103647026-103647045 None:intergenic 35.0%
TTCCAGTTCCATCAATTATC+AGG - Chr3:103648523-103648542 None:intergenic 35.0%
TTGAAGACGAATTCTGAACT+TGG + Chr3:103646330-103646349 MsG0380018043.01.T01:intron 35.0%
TTGCAGATGTATGATTCCAT+AGG - Chr3:103647157-103647176 None:intergenic 35.0%
! CACAGTGAAAACACTTTTGA+TGG + Chr3:103648899-103648918 MsG0380018043.01.T01:CDS 35.0%
! CTGATTTGAAGAAACAGCAT+GGG - Chr3:103649702-103649721 None:intergenic 35.0%
! GAAAACACTTTTGATGGAAG+TGG + Chr3:103648905-103648924 MsG0380018043.01.T01:CDS 35.0%
! GATCTCTAAAAACAAGTTCG+CGG - Chr3:103648799-103648818 None:intergenic 35.0%
! TACCACTTAGTCTTTGAACT+TGG + Chr3:103647937-103647956 MsG0380018043.01.T01:intron 35.0%
! TTTTTGTCTTTCTGTGGCTA+AGG - Chr3:103647055-103647074 None:intergenic 35.0%
!! AAGTTAGTAATGGACCAAGA+AGG + Chr3:103646909-103646928 MsG0380018043.01.T01:intron 35.0%
!! ACTGATTTGAAGAAACAGCA+TGG - Chr3:103649703-103649722 None:intergenic 35.0%
!! AGTTAGTAATGGACCAAGAA+GGG + Chr3:103646910-103646929 MsG0380018043.01.T01:intron 35.0%
!! GTTGCTCTTCACTTTTGTTT+TGG + Chr3:103646075-103646094 MsG0380018043.01.T01:intron 35.0%
!!! CCATTTTGGAACAGATTCAA+AGG + Chr3:103649264-103649283 MsG0380018043.01.T01:intron 35.0%
!!! CCTCTATTTTTGTCTTTCTG+TGG - Chr3:103647061-103647080 None:intergenic 35.0%
!!! GTTGTCTAGTTTTGATCGAA+TGG - Chr3:103648296-103648315 None:intergenic 35.0%
AACGTCTGCATACAAGAAGT+AGG - Chr3:103649039-103649058 None:intergenic 40.0%
AAGTTAGTGCTTGTGTGGAA+AGG + Chr3:103648056-103648075 MsG0380018043.01.T01:intron 40.0%
AATTAACAGCTCAGTGGCAA+TGG - Chr3:103648988-103649007 None:intergenic 40.0%
AGACGTTGAACACGACTTTA+GGG + Chr3:103649052-103649071 MsG0380018043.01.T01:intron 40.0%
AGCAGTTAGCACTAGCAATT+AGG - Chr3:103648031-103648050 None:intergenic 40.0%
AGGCAAAGGTGGTCTTTAAA+TGG + Chr3:103646981-103647000 MsG0380018043.01.T01:intron 40.0%
AGTTCCATCAATTATCAGGC+CGG - Chr3:103648519-103648538 None:intergenic 40.0%
ATGGAAAACCAGAAGAGGAA+CGG + Chr3:103645753-103645772 MsG0380018043.01.T01:CDS 40.0%
ATTAGGATAGGACACTTCTG+GGG - Chr3:103646421-103646440 None:intergenic 40.0%
CAAAAAGAAAGGGGCTAACT+TGG - Chr3:103646264-103646283 None:intergenic 40.0%
CAATGACAGGCTTCTCTTTA+AGG - Chr3:103648874-103648893 None:intergenic 40.0%
CACTAGAAGACACAGAGTTT+GGG - Chr3:103649320-103649339 None:intergenic 40.0%
CATTAGTGTGTCTCCCATAT+TGG + Chr3:103646723-103646742 MsG0380018043.01.T01:intron 40.0%
CCCAATTGTTATACTCTGCA+TGG + Chr3:103648681-103648700 MsG0380018043.01.T01:intron 40.0%
CGCACTCCAAGGTATAATTA+CGG + Chr3:103647788-103647807 MsG0380018043.01.T01:intron 40.0%
CGTCTTTACCATGTTTGGTA+AGG - Chr3:103647021-103647040 None:intergenic 40.0%
CTACAAGACAAAAGGGACTT+TGG - Chr3:103649458-103649477 None:intergenic 40.0%
CTCCAAGTTCAAAGACTAAG+TGG - Chr3:103647942-103647961 None:intergenic 40.0%
CTCTGATCACATCTACTATC+AGG + Chr3:103645974-103645993 MsG0380018043.01.T01:CDS 40.0%
GCAAGGATTCAACAAGTTTG+TGG + Chr3:103645830-103645849 MsG0380018043.01.T01:CDS 40.0%
GCAGTTAGCACTAGCAATTA+GGG - Chr3:103648030-103648049 None:intergenic 40.0%
GTTCATGATGACAGGAAACT+GGG - Chr3:103647135-103647154 None:intergenic 40.0%
TAGCACTAGTAATCCCTTCT+TGG - Chr3:103646926-103646945 None:intergenic 40.0%
TAGTACTTGTGGGTGTGAAA+AGG + Chr3:103646961-103646980 MsG0380018043.01.T01:intron 40.0%
TAGTAGATGTGATCAGAGTC+AGG - Chr3:103645972-103645991 None:intergenic 40.0%
TCCCCTAGATAGATATCTCA+TGG - Chr3:103647470-103647489 None:intergenic 40.0%
TCCGTCGCAAACATCATATA+TGG - Chr3:103649225-103649244 None:intergenic 40.0%
TGGCTCCAACATTATGGAAT+TGG + Chr3:103645797-103645816 MsG0380018043.01.T01:CDS 40.0%
TTACCATGTTTGGTAAGGCA+AGG - Chr3:103647016-103647035 None:intergenic 40.0%
TTATACCTTGGAGTGCGTAA+TGG - Chr3:103647785-103647804 None:intergenic 40.0%
TTCATGATGACAGGAAACTG+GGG - Chr3:103647134-103647153 None:intergenic 40.0%
TTCCATAGGTTCATGATGAC+AGG - Chr3:103647143-103647162 None:intergenic 40.0%
TTCCTGTCATCATGAACCTA+TGG + Chr3:103647138-103647157 MsG0380018043.01.T01:intron 40.0%
TTGACCTCAACTAAACTCCA+AGG + Chr3:103646625-103646644 MsG0380018043.01.T01:intron 40.0%
TTGTTATACTCTGCATGGAC+GGG + Chr3:103648686-103648705 MsG0380018043.01.T01:intron 40.0%
TTTCTGCACATGAATATGCC+CGG + Chr3:103648497-103648516 MsG0380018043.01.T01:intron 40.0%
! ACCAAAAAGCATATTCCCAC+CGG - Chr3:103646470-103646489 None:intergenic 40.0%
! AGTCGCAATATTTGTTGGGA+CGG - Chr3:103649358-103649377 None:intergenic 40.0%
! ATCTGAAGTTAGTGCTTGTG+TGG + Chr3:103648051-103648070 MsG0380018043.01.T01:intron 40.0%
! CCCCTTTCTTTTTGTGTATG+TGG + Chr3:103646270-103646289 MsG0380018043.01.T01:intron 40.0%
! GATCTCGTCACAACTCATTT+TGG - Chr3:103649405-103649424 None:intergenic 40.0%
! GGGCATTTGAATGAGCTTTT+TGG - Chr3:103647595-103647614 None:intergenic 40.0%
! TAAACTCCAAGGTATTCCCA+CGG + Chr3:103646636-103646655 MsG0380018043.01.T01:intron 40.0%
! TCCCTTTTGTCTTGTAGTGA+CGG + Chr3:103649461-103649480 MsG0380018043.01.T01:intron 40.0%
! TCTTGATGGCTCCAACATTA+TGG + Chr3:103645791-103645810 MsG0380018043.01.T01:CDS 40.0%
! TTTTCTGCCAATCTCCTTTC+AGG + Chr3:103646531-103646550 MsG0380018043.01.T01:intron 40.0%
!! CTCAAGGATTAGTCTCATAG+CGG - Chr3:103646677-103646696 None:intergenic 40.0%
!! CTTGAGGATTAGTCTCATAG+AGG - Chr3:103647830-103647849 None:intergenic 40.0%
!!! ATGGGGAAACTTATTTTGCC+TGG - Chr3:103647679-103647698 None:intergenic 40.0%
ACCCGTCACTACAAGACAAA+AGG - Chr3:103649466-103649485 None:intergenic 45.0%
ACCTCTTCAATTGCACCAAC+TGG - Chr3:103649163-103649182 None:intergenic 45.0%
ACTAATCCTTGAGTCTGCAG+CGG + Chr3:103646684-103646703 MsG0380018043.01.T01:intron 45.0%
AGATGGTAAGCTCTCCTTGA+AGG + Chr3:103645884-103645903 MsG0380018043.01.T01:CDS 45.0%
ATCTCCTTTCAGGCAGAATC+TGG + Chr3:103646541-103646560 MsG0380018043.01.T01:intron 45.0%
CAGACGTTGAACACGACTTT+AGG + Chr3:103649051-103649070 MsG0380018043.01.T01:intron 45.0%
CATTCTATTAGGCATGCTGC+TGG + Chr3:103648646-103648665 MsG0380018043.01.T01:intron 45.0%
CCAAACTCTGTGTCTTCTAG+TGG + Chr3:103649318-103649337 MsG0380018043.01.T01:intron 45.0%
CCACTAGAAGACACAGAGTT+TGG - Chr3:103649321-103649340 None:intergenic 45.0%
CCCGTCACTACAAGACAAAA+GGG - Chr3:103649465-103649484 None:intergenic 45.0%
GAATTGGTTGGAAACGAGCA+AGG + Chr3:103645813-103645832 MsG0380018043.01.T01:CDS 45.0%
GAGCAAGAGTGAGTTCAAAG+AGG + Chr3:103648613-103648632 MsG0380018043.01.T01:intron 45.0%
GATTCTGCCTGAAAGGAGAT+TGG - Chr3:103646541-103646560 None:intergenic 45.0%
GGACCACAAATTTCATGAGC+TGG + Chr3:103645851-103645870 MsG0380018043.01.T01:CDS 45.0%
GGCCTGATAATTGATGGAAC+TGG + Chr3:103648518-103648537 MsG0380018043.01.T01:intron 45.0%
GGTTCATGATGACAGGAAAC+TGG - Chr3:103647136-103647155 None:intergenic 45.0%
GTTCCATCAATTATCAGGCC+GGG - Chr3:103648518-103648537 None:intergenic 45.0%
TAAACGGCATGAACCGTCAA+TGG - Chr3:103646789-103646808 None:intergenic 45.0%
TCACTGTGAGCTACAATGAC+AGG - Chr3:103648887-103648906 None:intergenic 45.0%
TCATGATGACAGGAAACTGG+GGG - Chr3:103647133-103647152 None:intergenic 45.0%
TCTAAACCGTGGGAATACCT+TGG - Chr3:103646645-103646664 None:intergenic 45.0%
TCTTCAATTGCACCAACTGG+AGG - Chr3:103649160-103649179 None:intergenic 45.0%
TGTTATACTCTGCATGGACG+GGG + Chr3:103648687-103648706 MsG0380018043.01.T01:intron 45.0%
TGTTTGGTAAGGCAAGGCAA+AGG - Chr3:103647010-103647029 None:intergenic 45.0%
TTGCCTTGCCTTACCAAACA+TGG + Chr3:103647010-103647029 MsG0380018043.01.T01:intron 45.0%
TTGTGGGTGTGAAAAGGCAA+AGG + Chr3:103646967-103646986 MsG0380018043.01.T01:intron 45.0%
! AGACAAAAGGGACTTTGGGA+CGG - Chr3:103649453-103649472 None:intergenic 45.0%
! CAAGAAAGTGGCATTGAGTG+TGG + Chr3:103648841-103648860 MsG0380018043.01.T01:CDS 45.0%
! CCCTTTTGTCTTGTAGTGAC+GGG + Chr3:103649462-103649481 MsG0380018043.01.T01:intron 45.0%
! TCCAGTTGGTGCAATTGAAG+AGG + Chr3:103649159-103649178 MsG0380018043.01.T01:intron 45.0%
! TCCGGTGGGAATATGCTTTT+TGG + Chr3:103646466-103646485 MsG0380018043.01.T01:intron 45.0%
AACTGGAGGTAACCAGCAGA+TGG - Chr3:103649146-103649165 None:intergenic 50.0%
AAGAACGCAGCAAGTGTACC+AGG + Chr3:103647658-103647677 MsG0380018043.01.T01:intron 50.0%
ACTAATCCTCAAGTCGGCAG+CGG + Chr3:103647837-103647856 MsG0380018043.01.T01:intron 50.0%
AGAAAGGGGCTAACTTGGTC+AGG - Chr3:103646259-103646278 None:intergenic 50.0%
ATGCCCGGCCTGATAATTGA+TGG + Chr3:103648512-103648531 MsG0380018043.01.T01:intron 50.0%
CCATGATAACATGGTCGGTC+CGG + Chr3:103646448-103646467 MsG0380018043.01.T01:intron 50.0%
CTTGCAGGTGACACTAGATG+TGG + Chr3:103649115-103649134 MsG0380018043.01.T01:CDS 50.0%
GAAAACCAGAAGAGGAACGG+AGG + Chr3:103645756-103645775 MsG0380018043.01.T01:CDS 50.0%
GACATCCATTACGCACTCCA+AGG + Chr3:103647777-103647796 MsG0380018043.01.T01:intron 50.0%
GAGCTGGATAAGGACAGAGA+TGG + Chr3:103645867-103645886 MsG0380018043.01.T01:CDS 50.0%
GTCACCAGATTCTGCCTGAA+AGG - Chr3:103646548-103646567 None:intergenic 50.0%
TAGTCTCATAGCGGCCCAAA+GGG - Chr3:103646668-103646687 None:intergenic 50.0%
TCCCACGGTTTAGACCCTTT+GGG + Chr3:103646651-103646670 MsG0380018043.01.T01:intron 50.0%
TGGGTGTGAAAAGGCAAAGG+TGG + Chr3:103646970-103646989 MsG0380018043.01.T01:intron 50.0%
TTAGTCTCATAGCGGCCCAA+AGG - Chr3:103646669-103646688 None:intergenic 50.0%
TTCCCACGGTTTAGACCCTT+TGG + Chr3:103646650-103646669 MsG0380018043.01.T01:intron 50.0%
! ATCTGCTGGTTACCTCCAGT+TGG + Chr3:103649145-103649164 MsG0380018043.01.T01:CDS 50.0%
!! AGCACCGATGTCAGCAACAT+CGG - Chr3:103645919-103645938 None:intergenic 50.0%
AACAGCTCAGTGGCAATGGC+AGG - Chr3:103648984-103649003 None:intergenic 55.0%
AACCAGAAGAGGAACGGAGG+AGG + Chr3:103645759-103645778 MsG0380018043.01.T01:CDS 55.0%
ATCGGGCTCAAGCTCCTTCA+AGG - Chr3:103645901-103645920 None:intergenic 55.0%
CCGGACCGACCATGTTATCA+TGG - Chr3:103646451-103646470 None:intergenic 55.0%
CTAATCCTCAAGTCGGCAGC+GGG + Chr3:103647838-103647857 MsG0380018043.01.T01:intron 55.0%
GAGCCCGATGTTGCTGACAT+CGG + Chr3:103645912-103645931 MsG0380018043.01.T01:CDS 55.0%
GATAACATGGTCGGTCCGGT+GGG + Chr3:103646452-103646471 MsG0380018043.01.T01:intron 55.0%
GATGTGGTGTCTCCATCTGC+TGG + Chr3:103649131-103649150 MsG0380018043.01.T01:CDS 55.0%
GATGTTCCGCTGCAGACTCA+AGG - Chr3:103646693-103646712 None:intergenic 55.0%
GCCCAAAGGGTCTAAACCGT+GGG - Chr3:103646655-103646674 None:intergenic 55.0%
GGAGGAGGAGAGGTTCTTGA+TGG + Chr3:103645777-103645796 MsG0380018043.01.T01:CDS 55.0%
TGAGTCTGCAGCGGAACATC+CGG + Chr3:103646693-103646712 MsG0380018043.01.T01:intron 55.0%
TGATAACATGGTCGGTCCGG+TGG + Chr3:103646451-103646470 MsG0380018043.01.T01:intron 55.0%
! GCACCGATGTCAGCAACATC+GGG - Chr3:103645918-103645937 None:intergenic 55.0%
!! GCTCTTGGTTTGCCTGCTCA+GGG + Chr3:103645939-103645958 MsG0380018043.01.T01:CDS 55.0%
!! TGCTCTTGGTTTGCCTGCTC+AGG + Chr3:103645938-103645957 MsG0380018043.01.T01:CDS 55.0%
CAGAAGAGGAACGGAGGAGG+AGG + Chr3:103645762-103645781 MsG0380018043.01.T01:CDS 60.0%
CTCCTCCTCCGTTCCTCTTC+TGG - Chr3:103645764-103645783 None:intergenic 60.0%
GGCCCAAAGGGTCTAAACCG+TGG - Chr3:103646656-103646675 None:intergenic 60.0%
TCAGGAGTAGTGCCCTGAGC+AGG - Chr3:103645954-103645973 None:intergenic 60.0%
!! GCTGACATCGGTGCTGCTCT+TGG + Chr3:103645924-103645943 MsG0380018043.01.T01:CDS 60.0%
GAGGAACGGAGGAGGAGGAG+AGG + Chr3:103645767-103645786 MsG0380018043.01.T01:CDS 65.0%
!! GATGTCCCGCTGCCGACTTG+AGG - Chr3:103647846-103647865 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
Chr3 gene 103645753 103649812 103645753 ID=MsG0380018043.01;Name=MsG0380018043.01
Chr3 mRNA 103645753 103649812 103645753 ID=MsG0380018043.01.T01;Parent=MsG0380018043.01;Name=MsG0380018043.01.T01;_AED=0.47;_eAED=0.47;_QI=0|0|0|1|1|1|4|0|254
Chr3 exon 103645753 103645995 103645753 ID=MsG0380018043.01.T01:exon:27598;Parent=MsG0380018043.01.T01
Chr3 exon 103648788 103648966 103648788 ID=MsG0380018043.01.T01:exon:27599;Parent=MsG0380018043.01.T01
Chr3 exon 103649073 103649166 103649073 ID=MsG0380018043.01.T01:exon:27600;Parent=MsG0380018043.01.T01
Chr3 exon 103649564 103649812 103649564 ID=MsG0380018043.01.T01:exon:27601;Parent=MsG0380018043.01.T01
Chr3 CDS 103645753 103645995 103645753 ID=MsG0380018043.01.T01:cds;Parent=MsG0380018043.01.T01
Chr3 CDS 103648788 103648966 103648788 ID=MsG0380018043.01.T01:cds;Parent=MsG0380018043.01.T01
Chr3 CDS 103649073 103649166 103649073 ID=MsG0380018043.01.T01:cds;Parent=MsG0380018043.01.T01
Chr3 CDS 103649564 103649812 103649564 ID=MsG0380018043.01.T01:cds;Parent=MsG0380018043.01.T01
Gene Sequence

>MsG0380018043.01.T01

ATGGAAAACCAGAAGAGGAACGGAGGAGGAGGAGAGGTTCTTGATGGCTCCAACATTATGGAATTGGTTGGAAACGAGCAAGGATTCAACAAGTTTGTGGACCACAAATTTCATGAGCTGGATAAGGACAGAGATGGTAAGCTCTCCTTGAAGGAGCTTGAGCCCGATGTTGCTGACATCGGTGCTGCTCTTGGTTTGCCTGCTCAGGGCACTACTCCTGACTCTGATCACATCTACTATCAGTCATCACTCCGCGAACTTGTTTTTAGAGATCAAGAGACATTTTTGGAAGAATTCAAGAAAGTGGCATTGAGTGTGGTTGATTGCCTTAAAGAGAAGCCTGTCATTGTAGCTCACAGTGAAAACACTTTTGATGGAAGTGGTGTCAAGAGACTCTTATCCAACAAGTTTGAATTAGAAAGGGAATCTGCAAAAGATCGAAACGGAAAAATATCAAAGGATTACTTGCAGGTGACACTAGATGTGGTGTCTCCATCTGCTGGTTACCTCCAGTTGATGGATAAGGTTATTAGTGAAGCCTTTAAGACGGTGAATAATGAAGATGACAAGAAGATGATGATTAAAGAAGAAGAATTCAAGAAAATTTTAATTGAAATACTGGGGAGTATCATGTTGCAGTTAGAAGGAAGTCCCATGCTGTTTCTTCAAATCAGTTTACACGAGCCTTTAAGCTCATCTTCTACACTTTTGAACCCATCTAATATTATTCTTGTTCTAGTGAAACGTGTATGCATAACCGATTAA
Protein sequence

>MsG0380018043.01.T01

MENQKRNGGGGEVLDGSNIMELVGNEQGFNKFVDHKFHELDKDRDGKLSLKELEPDVADIGAALGLPAQGTTPDSDHIYYQSSLRELVFRDQETFLEEFKKVALSVVDCLKEKPVIVAHSENTFDGSGVKRLLSNKFELERESAKDRNGKISKDYLQVTLDVVSPSAGYLQLMDKVISEAFKTVNNEDDKKMMIKEEEFKKILIEILGSIMLQLEGSPMLFLQISLHEPLSSSSTLLNPSNIILVLVKRVCITD*