AlfalfaGEDB | MsG0180000292.01

M. sativa cultivar ZhongmuNo.1 / MsG0180000292.01

KEGG: -
GO: -
PFAM: PF14215

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180000292.01.T01	XP_003589130.1	83.183	333	10	2	15	346	34	321	0	560

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180000292.01.T01	K4PW38	43.165	139	64	6	24	156	52	181	1.31E-19	92.8

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080047899.01	MsG0180000292.01	0.816593	5.104064e-52	3.632043e-49
MsG0080047989.01	MsG0180000292.01	0.836265	1.035260e-56	1.298073e-53
MsG0080048727.01	MsG0180000292.01	0.816242	6.117651e-52	4.311765e-49
MsG0080048773.01	MsG0180000292.01	0.859171	4.974850e-63	1.301826e-59
MsG0080048777.01	MsG0180000292.01	0.828800	7.351844e-55	7.384360e-52
MsG0080048780.01	MsG0180000292.01	0.812420	4.277694e-51	2.718678e-48
MsG0080048801.01	MsG0180000292.01	0.843152	1.670452e-58	2.589769e-55
MsG0080048820.01	MsG0180000292.01	0.827986	1.155311e-54	1.133377e-51
MsG0080048876.01	MsG0180000292.01	0.823726	1.186304e-53	1.029953e-50
MsG0080049040.01	MsG0180000292.01	0.843661	1.221688e-58	1.925017e-55

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180000292.01.T01	MTR_1g018810	83.183	333	10	2	15	346	34	321	0.0	560
MsG0180000292.01.T01	MTR_5g034840	37.255	255	94	7	15	250	32	239	3.24e-47	164
MsG0180000292.01.T01	MTR_2g078750	45.614	114	49	4	48	156	1	106	6.98e-20	89.7
MsG0180000292.01.T01	MTR_2g078750	42.446	139	63	6	24	156	41	168	1.25e-19	89.7
MsG0180000292.01.T01	MTR_2g078750	49.231	65	32	1	92	156	12	75	2.28e-11	64.3

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180000292.01.T01	AT1G60060	36.752	234	82	6	15	229	32	218	2.38e-44	157
MsG0180000292.01.T01	AT1G60060	36.364	220	74	6	29	229	6	178	5.42e-38	139
MsG0180000292.01.T01	AT3G15240	41.304	138	71	5	24	156	55	187	8.28e-21	92.4
MsG0180000292.01.T01	AT5G53900	40.845	142	68	6	24	156	42	176	7.09e-19	87.0
MsG0180000292.01.T01	AT5G53900	47.692	65	33	1	92	156	1	64	7.66e-11	62.4
MsG0180000292.01.T01	AT5G53900	47.692	65	33	1	92	156	1	64	7.66e-11	62.4

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Find 88 sgRNAs with CRISPR-Local

Find 150 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGAGTGGGGAGAGTGTT+GGG	0.415986	1:+4046641	None:intergenic
AAAGAAGGCTTAGTACAACT+TGG	0.558403	1:-4045273	MsG0180000292.01.T01:CDS
AAAGTAATCCTGGCATGGTT+TGG	0.415252	1:+4044517	None:intergenic
AAATGAAAGTAATCCTGGCA+TGG	0.539286	1:+4044512	None:intergenic
AAATTTGGTTTGGTAATGCA+TGG	0.564278	1:+4044459	None:intergenic
AACTGAAACTCCCATGCCCT+TGG	0.450146	1:+4045461	None:intergenic
ACAACCATAATGGAGTGAGT+GGG	0.662506	1:-4046720	MsG0180000292.01.T01:five_prime_UTR
ACAACTTGGTTCATTTAACA+AGG	0.613113	1:-4045259	MsG0180000292.01.T01:intron
ACATTTCATATTGCTAATTA+TGG	0.183731	1:-4044195	MsG0180000292.01.T01:CDS
ACCTAAGTTTATGGCTATCA+TGG	0.369497	1:+4044353	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ACAACTTGGTTCATTTAACA+AGG	-	Chr1:4045662-4045681	MsG0180000292.01.T01:intron	30.0%
AGGTTTATAGTTATGGAGAA+GGG	-	Chr1:4044886-4044905	MsG0180000292.01.T01:intron	30.0%
ATGCTTCAATTGATCATGTA+AGG	-	Chr1:4045128-4045147	MsG0180000292.01.T01:intron	30.0%
ATTCTTCAAAATGTCTCATG+AGG	-	Chr1:4044866-4044885	MsG0180000292.01.T01:intron	30.0%
ATTTAGTGCTCAACATACAA+AGG	-	Chr1:4046367-4046386	MsG0180000292.01.T01:intron	30.0%
CAAACCAAATTTCCAAATGA+TGG	-	Chr1:4046473-4046492	MsG0180000292.01.T01:intron	30.0%
CATCATTTGGAAATTTGGTT+TGG	+	Chr1:4046475-4046494	None:intergenic	30.0%
CCAAGGGAAATAAAAGAAAT+TGG	-	Chr1:4044608-4044627	MsG0180000292.01.T01:CDS	30.0%
CTTTCCATCATTTGGAAATT+TGG	+	Chr1:4046480-4046499	None:intergenic	30.0%
GCTAATTATGGAGATCAAAA+AGG	-	Chr1:4046738-4046757	MsG0180000292.01.T01:five_prime_UTR	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr1	gene	4044164	4046779	4044164	ID=MsG0180000292.01;Name=MsG0180000292.01
Chr1	mRNA	4044164	4046779	4044164	ID=MsG0180000292.01.T01;Parent=MsG0180000292.01;Name=MsG0180000292.01.T01;_AED=0.30;_eAED=0.36;_QI=201\|0.83\|0.85\|1\|0.33\|0.42\|7\|0\|346
Chr1	exon	4046493	4046779	4046493	ID=MsG0180000292.01.T01:exon:5675;Parent=MsG0180000292.01.T01
Chr1	exon	4046314	4046367	4046314	ID=MsG0180000292.01.T01:exon:5676;Parent=MsG0180000292.01.T01
Chr1	exon	4046036	4046167	4046036	ID=MsG0180000292.01.T01:exon:5677;Parent=MsG0180000292.01.T01
Chr1	exon	4045799	4045904	4045799	ID=MsG0180000292.01.T01:exon:5678;Parent=MsG0180000292.01.T01
Chr1	exon	4045445	4045486	4045445	ID=MsG0180000292.01.T01:exon:5679;Parent=MsG0180000292.01.T01
Chr1	exon	4045260	4045316	4045260	ID=MsG0180000292.01.T01:exon:5680;Parent=MsG0180000292.01.T01
Chr1	exon	4044164	4044727	4044164	ID=MsG0180000292.01.T01:exon:5681;Parent=MsG0180000292.01.T01
Chr1	five_prime_UTR	4046579	4046779	4046579	ID=MsG0180000292.01.T01:five_prime_utr;Parent=MsG0180000292.01.T01
Chr1	CDS	4046493	4046578	4046493	ID=MsG0180000292.01.T01:cds;Parent=MsG0180000292.01.T01
Chr1	CDS	4046314	4046367	4046314	ID=MsG0180000292.01.T01:cds;Parent=MsG0180000292.01.T01
Chr1	CDS	4046036	4046167	4046036	ID=MsG0180000292.01.T01:cds;Parent=MsG0180000292.01.T01
Chr1	CDS	4045799	4045904	4045799	ID=MsG0180000292.01.T01:cds;Parent=MsG0180000292.01.T01
Chr1	CDS	4045445	4045486	4045445	ID=MsG0180000292.01.T01:cds;Parent=MsG0180000292.01.T01
Chr1	CDS	4045260	4045316	4045260	ID=MsG0180000292.01.T01:cds;Parent=MsG0180000292.01.T01
Chr1	CDS	4044164	4044727	4044164	ID=MsG0180000292.01.T01:cds;Parent=MsG0180000292.01.T01

Gene Sequence

>MsG0180000292.01.T01

ATGCTCATTTCCTACCTCTTCAACTTCTTCCAAATGGGTCTATGCTGTTTTCTGAGGGTAGTACCACGTATCTTTCCTCCACCAAGGTGGGAATTTGGAGGGACTTCTCTTGATCGTTCCAAGGGAAATAAAAGAAATTGGATTATTGTATGGGAAGATGGATTCTGTGATTTTAATGAATGTGAGCAAAGGAAGAATGGATGCTTGAATGAAAGATTTGGAGCTGATGTATTCTTCAAAATGTCTCATGAGGTTTATAGTTATGGAGAAGGATTGGGGAAAGTTGCAGCAGATAATGGTCACAAATGGGTTTATAGTGACACTCAAAATGGGTGTGATGCTAACTATGTTGGTCCATGGAATGCTTCAATTGATCATCAACCAAGGGCATGGGAGTTTCAGTTAAATTCAGGCATTCAGACTATTGCTGTCATTGCTGTCAAAGAAGGCTTAGTACAACTTGGTTCATTTAACAAGATTTTCATTTTTGCAAGTTTAATACATTCGTGGACTATAGTCACACCGACCCACATATTTAGAGACCAAAATCACGATCTACTCAAATATTTCATATTTCTTGAAAATCATTATCAAATCACAAGTTGTGTTCAGATTGCAGAAGATCTTGATTTAGTGCTCAACATACAAAGGAAATTCAGCTACCTCCAAACCATGCCAGGATTACTTTCATTTCAAAGACCACAACACATACCATTTCAACATCCATGCATTACCAAACCAAATTTCCAAATGATGGAAAGCAATGAAGTTTCTAAGAACCATGTAACCAAACTTAATAACATGCAAGATGAAAGATCCAACTATTTCTCCATGATAGCCATAAACTTAGGTTTAAATCATCCACAGAATGGAACATCAATGCCACCACTTTGGTCACCTCCACTTTCTTTGCCTAACAATCACATTCAACTTCATGAAACAAATAGGATCAATAACACAAGCCACAAAGTGAAGATTGAAGAGGGCACATTTCATATTGCTAATTATGGAGATCAAAAAGGAAAGGCAGGGTGGTCCTAA

Protein sequence

>MsG0180000292.01.T01

MLISYLFNFFQMGLCCFLRVVPRIFPPPRWEFGGTSLDRSKGNKRNWIIVWEDGFCDFNECEQRKNGCLNERFGADVFFKMSHEVYSYGEGLGKVAADNGHKWVYSDTQNGCDANYVGPWNASIDHQPRAWEFQLNSGIQTIAVIAVKEGLVQLGSFNKIFIFASLIHSWTIVTPTHIFRDQNHDLLKYFIFLENHYQITSCVQIAEDLDLVLNIQRKFSYLQTMPGLLSFQRPQHIPFQHPCITKPNFQMMESNEVSKNHVTKLNNMQDERSNYFSMIAINLGLNHPQNGTSMPPLWSPPLSLPNNHIQLHETNRINNTSHKVKIEEGTFHIANYGDQKGKAGWS*