AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180000292.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180000292.01.T01 MTR_1g018810 83.183 333 10 2 15 346 34 321 0.0 560
MsG0180000292.01.T01 MTR_5g034840 37.255 255 94 7 15 250 32 239 3.24e-47 164
MsG0180000292.01.T01 MTR_2g078750 45.614 114 49 4 48 156 1 106 6.98e-20 89.7
MsG0180000292.01.T01 MTR_2g078750 42.446 139 63 6 24 156 41 168 1.25e-19 89.7
MsG0180000292.01.T01 MTR_2g078750 49.231 65 32 1 92 156 12 75 2.28e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180000292.01.T01 AT1G60060 36.752 234 82 6 15 229 32 218 2.38e-44 157
MsG0180000292.01.T01 AT1G60060 36.364 220 74 6 29 229 6 178 5.42e-38 139
MsG0180000292.01.T01 AT3G15240 41.304 138 71 5 24 156 55 187 8.28e-21 92.4
MsG0180000292.01.T01 AT5G53900 40.845 142 68 6 24 156 42 176 7.09e-19 87.0
MsG0180000292.01.T01 AT5G53900 47.692 65 33 1 92 156 1 64 7.66e-11 62.4
MsG0180000292.01.T01 AT5G53900 47.692 65 33 1 92 156 1 64 7.66e-11 62.4

Find 88 sgRNAs with CRISPR-Local

Find 150 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTTCCATCATTTGGAAATT+TGG 0.071257 1:+4044444 None:intergenic
ATGATTTAAACCTAAGTTTA+TGG 0.157867 1:+4044344 None:intergenic
ACATTTCATATTGCTAATTA+TGG 0.183731 1:-4044195 MsG0180000292.01.T01:CDS
TACAATAGTGTTCAACATTT+TGG 0.189842 1:-4046688 MsG0180000292.01.T01:five_prime_UTR
CTTCATTGCTTTCCATCATT+TGG 0.227927 1:+4044436 None:intergenic
CCTCTTCAATCTTCACTTTG+TGG 0.264703 1:+4044220 None:intergenic
ATCTTGCATGTTATTAAGTT+TGG 0.269651 1:+4044395 None:intergenic
ATTTGAGTAGATCGTGATTT+TGG 0.269808 1:+4044640 None:intergenic
TGTTGTTTAAGGTGGGAATT+TGG 0.274976 1:-4046356 MsG0180000292.01.T01:intron
TCAGTTAAATTCAGGCATTC+AGG 0.281549 1:-4045444 MsG0180000292.01.T01:intron
TGTTGAACACTATTGTAAAA+TGG 0.307117 1:+4046694 None:intergenic
GCTAATTATGGAGATCAAAA+AGG 0.316814 1:-4044183 MsG0180000292.01.T01:CDS
CCAAGGGAAATAAAAGAAAT+TGG 0.316828 1:-4046313 MsG0180000292.01.T01:intron
GTTTATAGTGACACTCAAAA+TGG 0.326390 1:-4045845 MsG0180000292.01.T01:CDS
TCTCATGAGGTTTATAGTTA+TGG 0.339420 1:-4046042 MsG0180000292.01.T01:CDS
GGATGCTTGAATGAAAGATT+TGG 0.362727 1:-4046087 MsG0180000292.01.T01:CDS
TGTTTGTTAGGATTATTGTA+TGG 0.365430 1:-4046155 MsG0180000292.01.T01:intron
ACCTAAGTTTATGGCTATCA+TGG 0.369497 1:+4044353 None:intergenic
CATCATTTGGAAATTTGGTT+TGG 0.377261 1:+4044449 None:intergenic
CAAACCAAATTTCCAAATGA+TGG 0.379754 1:-4044448 MsG0180000292.01.T01:CDS
GTACCCCACTCACTCCATTA+TGG 0.380599 1:+4046716 None:intergenic
TTCAACTTCATGAAACAAAT+AGG 0.381434 1:-4044257 MsG0180000292.01.T01:CDS
TGGGAGTTTCAGTTAAATTC+AGG 0.382777 1:-4045452 MsG0180000292.01.T01:CDS
TGAAGTTGAATGTGATTGTT+AGG 0.384096 1:+4044270 None:intergenic
TGTTATTAAGTTTGGTTACA+TGG 0.402972 1:+4044403 None:intergenic
CCTCTTCAACTTCTTCCAAA+TGG 0.409092 1:-4046542 MsG0180000292.01.T01:CDS
CTTTGAAATGAAAGTAATCC+TGG 0.413784 1:+4044507 None:intergenic
AAAGTAATCCTGGCATGGTT+TGG 0.415252 1:+4044517 None:intergenic
AGGATTATTGTATGGGAAGA+TGG 0.415442 1:-4046147 MsG0180000292.01.T01:CDS
AAAAGAGTGGGGAGAGTGTT+GGG 0.415986 1:+4046641 None:intergenic
CAGCAGATAATGGTCACAAA+TGG 0.418083 1:-4045868 MsG0180000292.01.T01:CDS
CTCTTCAACTTCTTCCAAAT+GGG 0.420849 1:-4046541 MsG0180000292.01.T01:CDS
GGGAAAGTTGCAGCAGATAA+TGG 0.426441 1:-4045878 MsG0180000292.01.T01:CDS
GAAAACAGCATAGACCCATT+TGG 0.441175 1:+4046527 None:intergenic
AACTGAAACTCCCATGCCCT+TGG 0.450146 1:+4045461 None:intergenic
GCTGTCATTGCTGTCAAAGA+AGG 0.450482 1:-4045288 MsG0180000292.01.T01:CDS
GTAATGCATGGATGTTGAAA+TGG 0.457555 1:+4044471 None:intergenic
AGCTACCTCCAAACCATGCC+AGG 0.471115 1:-4044525 MsG0180000292.01.T01:CDS
TACAACCATAATGGAGTGAG+TGG 0.475355 1:-4046721 MsG0180000292.01.T01:five_prime_UTR
GGCTATCATGGAGAAATAGT+TGG 0.477446 1:+4044365 None:intergenic
AGCAGATAATGGTCACAAAT+GGG 0.486308 1:-4045867 MsG0180000292.01.T01:CDS
GAATGTGAGCAAAGGAAGAA+TGG 0.490985 1:-4046108 MsG0180000292.01.T01:CDS
TTTGACAGCAACCAAGGGCA+TGG 0.491667 1:-4045472 MsG0180000292.01.T01:intron
TTGCAAGTTTAATACATTCG+TGG 0.494103 1:-4044695 MsG0180000292.01.T01:CDS
CTAGACTTTCCCTTTCAGCT+TGG 0.494625 1:+4046759 None:intergenic
GGCATTGATGTTCCATTCTG+TGG 0.500646 1:+4044321 None:intergenic
TTTATAGTGACACTCAAAAT+GGG 0.504799 1:-4045844 MsG0180000292.01.T01:CDS
GTTTGTTAGGATTATTGTAT+GGG 0.510760 1:-4046154 MsG0180000292.01.T01:intron
CACCGGTCACCAAGCTGAAA+GGG 0.511986 1:-4046768 None:intergenic
GGTTTAAATCATCCACAGAA+TGG 0.513835 1:-4044333 MsG0180000292.01.T01:CDS
TCCATGATAGCCATAAACTT+AGG 0.517062 1:-4044354 MsG0180000292.01.T01:CDS
GACTTCTCTTGATCGTTCCA+AGG 0.518829 1:-4046330 MsG0180000292.01.T01:CDS
AGTATAATGATCACATTTGA+AGG 0.520545 1:+4046664 None:intergenic
TTGACAGCAACCAAGGGCAT+GGG 0.522018 1:-4045471 MsG0180000292.01.T01:intron
GAGGTTTATAGTTATGGAGA+AGG 0.523360 1:-4046036 MsG0180000292.01.T01:CDS
GAACATCAATGCCACCACTT+TGG 0.530008 1:-4044311 MsG0180000292.01.T01:CDS
GTAATCCTGGCATGGTTTGG+AGG 0.532606 1:+4044520 None:intergenic
TGTTTAAGGTGGGAATTTGG+AGG 0.535611 1:-4046353 MsG0180000292.01.T01:intron
AAATGAAAGTAATCCTGGCA+TGG 0.539286 1:+4044512 None:intergenic
GTTTAAGGTGGGAATTTGGA+GGG 0.541664 1:-4046352 MsG0180000292.01.T01:intron
AGGTTTATAGTTATGGAGAA+GGG 0.550052 1:-4046035 MsG0180000292.01.T01:intron
AAAGAAGGCTTAGTACAACT+TGG 0.558403 1:-4045273 MsG0180000292.01.T01:CDS
TCACCGGTCACCAAGCTGAA+AGG 0.561817 1:-4046769 None:intergenic
CCATTTGGAAGAAGTTGAAG+AGG 0.562010 1:+4046542 None:intergenic
AAATTTGGTTTGGTAATGCA+TGG 0.564278 1:+4044459 None:intergenic
TTGGAAGAAGTTGAAGAGGT+AGG 0.566819 1:+4046546 None:intergenic
ATTCTTCAAAATGTCTCATG+AGG 0.574625 1:-4046055 MsG0180000292.01.T01:CDS
TGATCAATTGAAGCATTCCA+TGG 0.576323 1:+4045800 None:intergenic
ATGCTAACTATGTTGGTCCA+TGG 0.581522 1:-4045817 MsG0180000292.01.T01:CDS
ACTTCTCTTGATCGTTCCAA+GGG 0.587449 1:-4046329 MsG0180000292.01.T01:CDS
CACAAAGTGAAGATTGAAGA+GGG 0.588802 1:-4044219 MsG0180000292.01.T01:CDS
TGTTGAAATGGTATGTGTTG+TGG 0.592823 1:+4044483 None:intergenic
ATTTAGTGCTCAACATACAA+AGG 0.592918 1:-4044554 MsG0180000292.01.T01:CDS
TGGTCTCTAAATATGTGGGT+CGG 0.594806 1:+4044660 None:intergenic
TGATTGTTAGGCAAAGAAAG+TGG 0.598592 1:+4044282 None:intergenic
CAAGCTGAAAGGGAAAGTCT+AGG 0.601568 1:-4046758 MsG0180000292.01.T01:five_prime_UTR
ACAACTTGGTTCATTTAACA+AGG 0.613113 1:-4045259 MsG0180000292.01.T01:intron
TGCAAGAGAGAATGAAGCAA+GGG 0.620819 1:+4046597 None:intergenic
GGGTGTGATGCTAACTATGT+TGG 0.633314 1:-4045824 MsG0180000292.01.T01:CDS
CCACAAAGTGAAGATTGAAG+AGG 0.636709 1:-4044220 MsG0180000292.01.T01:CDS
TTGCAAGAGAGAATGAAGCA+AGG 0.644935 1:+4046596 None:intergenic
CAACCATAATGGAGTGAGTG+GGG 0.651877 1:-4046719 MsG0180000292.01.T01:five_prime_UTR
ACAACCATAATGGAGTGAGT+GGG 0.662506 1:-4046720 MsG0180000292.01.T01:five_prime_UTR
GAAAGTGGAGGTGACCAAAG+TGG 0.664958 1:+4044297 None:intergenic
AGTGGAGGTGACCAAAGTGG+TGG 0.667830 1:+4044300 None:intergenic
CACGTATCTTTCCTCCACCA+AGG 0.689055 1:-4046492 MsG0180000292.01.T01:intron
TTGTTAGGCAAAGAAAGTGG+AGG 0.694470 1:+4044285 None:intergenic
CTTGGTGGAGGAAAGATACG+TGG 0.715762 1:+4046493 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTAATTTTGTTACATA+AGG + Chr1:4046071-4046090 None:intergenic 10.0%
!! ACTAATGAAATATACATTTA+AGG + Chr1:4046124-4046143 None:intergenic 15.0%
!! ATAATAAATATTATGCAGAT+TGG - Chr1:4045021-4045040 MsG0180000292.01.T01:intron 15.0%
!! TAATAAATATTATGCAGATT+GGG - Chr1:4045022-4045041 MsG0180000292.01.T01:intron 15.0%
!!! AAATCTTATTTTCTTAAACA+TGG + Chr1:4044951-4044970 None:intergenic 15.0%
!!! ATCAAATTACTATTCATTTT+TGG - Chr1:4045601-4045620 MsG0180000292.01.T01:intron 15.0%
!!! CAAAATTACAAAACATTTTA+AGG + Chr1:4045923-4045942 None:intergenic 15.0%
!!! TAATATTTAGTATTTTACCT+TGG + Chr1:4044449-4044468 None:intergenic 15.0%
!! AATAAATATTATGCAGATTG+GGG - Chr1:4045023-4045042 MsG0180000292.01.T01:intron 20.0%
!! ACATTTCATATTGCTAATTA+TGG - Chr1:4046726-4046745 MsG0180000292.01.T01:five_prime_UTR 20.0%
!! ACTATTTCAATGTTAACTTA+TGG + Chr1:4045403-4045422 None:intergenic 20.0%
!! ATGATTTAAACCTAAGTTTA+TGG + Chr1:4046580-4046599 None:intergenic 20.0%
!! CATAATTTACAAAGAAAATG+AGG + Chr1:4045374-4045393 None:intergenic 20.0%
!! CTATTTCAATGTTAACTTAT+GGG + Chr1:4045402-4045421 None:intergenic 20.0%
!! TCTAAAAATTACAACCATAA+TGG - Chr1:4044191-4044210 MsG0180000292.01.T01:CDS 20.0%
!!! AATTGGTAAGTTTTATTTCA+TGG - Chr1:4044625-4044644 MsG0180000292.01.T01:CDS 20.0%
!!! ACGATTTTTTCGAAATATTT+AGG + Chr1:4046019-4046038 None:intergenic 20.0%
!!! AGATTTTACTATCTTTTTAG+TGG - Chr1:4044965-4044984 MsG0180000292.01.T01:intron 20.0%
!!! ATAGTAATTTGATAGCATTA+TGG + Chr1:4045594-4045613 None:intergenic 20.0%
!!! ATCTTTAGTCTGTAATTTTA+TGG + Chr1:4046188-4046207 None:intergenic 20.0%
!!! CTCATTTTCTTTGTAAATTA+TGG - Chr1:4045372-4045391 MsG0180000292.01.T01:intron 20.0%
!!! GATTTTACTATCTTTTTAGT+GGG - Chr1:4044966-4044985 MsG0180000292.01.T01:intron 20.0%
! ACACAAAAGTTGTCAAAAAA+TGG + Chr1:4045286-4045305 None:intergenic 25.0%
! AGTATAATGATCACATTTGA+AGG + Chr1:4044260-4044279 None:intergenic 25.0%
! ATCTTGCATGTTATTAAGTT+TGG + Chr1:4046529-4046548 None:intergenic 25.0%
! TCATCAAATATATCTTTCGT+TGG - Chr1:4046152-4046171 MsG0180000292.01.T01:intron 25.0%
! TGTTATTAAGTTTGGTTACA+TGG + Chr1:4046521-4046540 None:intergenic 25.0%
! TGTTGAACACTATTGTAAAA+TGG + Chr1:4044230-4044249 None:intergenic 25.0%
! TTCAACTTCATGAAACAAAT+AGG - Chr1:4046664-4046683 MsG0180000292.01.T01:five_prime_UTR 25.0%
! TTTATAGTGACACTCAAAAT+GGG - Chr1:4045077-4045096 MsG0180000292.01.T01:intron 25.0%
!! AACATTTAGAATTTGCACAA+AGG + Chr1:4045206-4045225 None:intergenic 25.0%
!! GTTTGTTAGGATTATTGTAT+GGG - Chr1:4044767-4044786 MsG0180000292.01.T01:intron 25.0%
!! TACAATAGTGTTCAACATTT+TGG - Chr1:4044233-4044252 MsG0180000292.01.T01:CDS 25.0%
!! TATTTAGTATTTTACCTTGG+TGG + Chr1:4044446-4044465 None:intergenic 25.0%
!! TCTGTCTTTTATTAGTTAGT+TGG - Chr1:4045838-4045857 MsG0180000292.01.T01:CDS 25.0%
!! TGTTTGTTAGGATTATTGTA+TGG - Chr1:4044766-4044785 MsG0180000292.01.T01:intron 25.0%
!! TTTCGAAAAAATCGTCATTT+TGG - Chr1:4046024-4046043 MsG0180000292.01.T01:intron 25.0%
!!! AATAACACGTTTTGTTTGTT+AGG - Chr1:4044754-4044773 MsG0180000292.01.T01:intron 25.0%
!!! ATTTTAATGAATGTGAGCAA+AGG - Chr1:4044805-4044824 MsG0180000292.01.T01:intron 25.0%
!!! ATTTTGGTCTCTAAATATGT+GGG + Chr1:4046268-4046287 None:intergenic 25.0%
!!! TATGGTTGTAATTTTTAGAG+TGG + Chr1:4044190-4044209 None:intergenic 25.0%
ACAACTTGGTTCATTTAACA+AGG - Chr1:4045662-4045681 MsG0180000292.01.T01:intron 30.0%
AGGTTTATAGTTATGGAGAA+GGG - Chr1:4044886-4044905 MsG0180000292.01.T01:intron 30.0%
ATGCTTCAATTGATCATGTA+AGG - Chr1:4045128-4045147 MsG0180000292.01.T01:intron 30.0%
ATTCTTCAAAATGTCTCATG+AGG - Chr1:4044866-4044885 MsG0180000292.01.T01:intron 30.0%
ATTTAGTGCTCAACATACAA+AGG - Chr1:4046367-4046386 MsG0180000292.01.T01:intron 30.0%
CAAACCAAATTTCCAAATGA+TGG - Chr1:4046473-4046492 MsG0180000292.01.T01:intron 30.0%
CATCATTTGGAAATTTGGTT+TGG + Chr1:4046475-4046494 None:intergenic 30.0%
CCAAGGGAAATAAAAGAAAT+TGG - Chr1:4044608-4044627 MsG0180000292.01.T01:CDS 30.0%
CTTTCCATCATTTGGAAATT+TGG + Chr1:4046480-4046499 None:intergenic 30.0%
GCTAATTATGGAGATCAAAA+AGG - Chr1:4046738-4046757 MsG0180000292.01.T01:five_prime_UTR 30.0%
GTTTATAGTGACACTCAAAA+TGG - Chr1:4045076-4045095 MsG0180000292.01.T01:intron 30.0%
TCTCATGAGGTTTATAGTTA+TGG - Chr1:4044879-4044898 MsG0180000292.01.T01:intron 30.0%
TGAAGTTGAATGTGATTGTT+AGG + Chr1:4046654-4046673 None:intergenic 30.0%
TGCTTCAATTGATCATGTAA+GGG - Chr1:4045129-4045148 MsG0180000292.01.T01:intron 30.0%
TTATGGAGATCAAAAAGGAA+AGG - Chr1:4046743-4046762 MsG0180000292.01.T01:five_prime_UTR 30.0%
TTGATACGTGTAGAATTCAA+GGG - Chr1:4045940-4045959 MsG0180000292.01.T01:intron 30.0%
TTGCAAGTTTAATACATTCG+TGG - Chr1:4046226-4046245 MsG0180000292.01.T01:intron 30.0%
TTTGATACGTGTAGAATTCA+AGG - Chr1:4045939-4045958 MsG0180000292.01.T01:intron 30.0%
! ATATGAGCACAGAACAATTT+TGG - Chr1:4045707-4045726 MsG0180000292.01.T01:intron 30.0%
! ATTTAGAATTTGCACAAAGG+AGG + Chr1:4045203-4045222 None:intergenic 30.0%
! ATTTGAGTAGATCGTGATTT+TGG + Chr1:4046284-4046303 None:intergenic 30.0%
!! AAATTTGGTTTGGTAATGCA+TGG + Chr1:4046465-4046484 None:intergenic 30.0%
!! CCAATTTCTTTTATTTCCCT+TGG + Chr1:4044611-4044630 None:intergenic 30.0%
!! CTAATGTGCTTTGTTGTTTA+AGG - Chr1:4044554-4044573 MsG0180000292.01.T01:CDS 30.0%
!! CTTTGAAATGAAAGTAATCC+TGG + Chr1:4046417-4046436 None:intergenic 30.0%
!! GATTTTGGTCTCTAAATATG+TGG + Chr1:4046269-4046288 None:intergenic 30.0%
!! GCTCATATTTTGAAGGAAAA+AGG + Chr1:4045695-4045714 None:intergenic 30.0%
!! TAAATTTTGACAGCAACCAA+GGG - Chr1:4045444-4045463 MsG0180000292.01.T01:intron 30.0%
!! TTAAATTTTGACAGCAACCA+AGG - Chr1:4045443-4045462 MsG0180000292.01.T01:intron 30.0%
!! TTTTGGTCTTTAAATATGCG+CGG - Chr1:4045724-4045743 MsG0180000292.01.T01:intron 30.0%
AAAGAAGGCTTAGTACAACT+TGG - Chr1:4045648-4045667 MsG0180000292.01.T01:intron 35.0%
AAATGAAAGTAATCCTGGCA+TGG + Chr1:4046412-4046431 None:intergenic 35.0%
ACCTAAGTTTATGGCTATCA+TGG + Chr1:4046571-4046590 None:intergenic 35.0%
AGGATTATTGTATGGGAAGA+TGG - Chr1:4044774-4044793 MsG0180000292.01.T01:intron 35.0%
CACAAAGTGAAGATTGAAGA+GGG - Chr1:4046702-4046721 MsG0180000292.01.T01:five_prime_UTR 35.0%
CTCTTCAACTTCTTCCAAAT+GGG - Chr1:4044380-4044399 MsG0180000292.01.T01:CDS 35.0%
CTTCATTGCTTTCCATCATT+TGG + Chr1:4046488-4046507 None:intergenic 35.0%
GAGGTTTATAGTTATGGAGA+AGG - Chr1:4044885-4044904 MsG0180000292.01.T01:intron 35.0%
GGATGCTTGAATGAAAGATT+TGG - Chr1:4044834-4044853 MsG0180000292.01.T01:intron 35.0%
GGTTTAAATCATCCACAGAA+TGG - Chr1:4046588-4046607 MsG0180000292.01.T01:five_prime_UTR 35.0%
GTAATGCATGGATGTTGAAA+TGG + Chr1:4046453-4046472 None:intergenic 35.0%
TCAGTTAAATTCAGGCATTC+AGG - Chr1:4045477-4045496 MsG0180000292.01.T01:intron 35.0%
TCCATGATAGCCATAAACTT+AGG - Chr1:4046567-4046586 MsG0180000292.01.T01:exon 35.0%
TGATTGTTAGGCAAAGAAAG+TGG + Chr1:4046642-4046661 None:intergenic 35.0%
TGGGAGTTTCAGTTAAATTC+AGG - Chr1:4045469-4045488 MsG0180000292.01.T01:intron 35.0%
TGTTGAAATGGTATGTGTTG+TGG + Chr1:4046441-4046460 None:intergenic 35.0%
TTCCATTGTGCAAAAAGAGT+GGG + Chr1:4044295-4044314 None:intergenic 35.0%
TTTCCATTGTGCAAAAAGAG+TGG + Chr1:4044296-4044315 None:intergenic 35.0%
! AAACATGGCAAGAAAGTGTA+AGG + Chr1:4044936-4044955 None:intergenic 35.0%
! AGCAGATAATGGTCACAAAT+GGG - Chr1:4045054-4045073 MsG0180000292.01.T01:intron 35.0%
! TCTTTTTGCACAATGGAAAG+TGG - Chr1:4044297-4044316 MsG0180000292.01.T01:CDS 35.0%
! TGATCAATTGAAGCATTCCA+TGG + Chr1:4045124-4045143 None:intergenic 35.0%
! TGTTGTTTAAGGTGGGAATT+TGG - Chr1:4044565-4044584 MsG0180000292.01.T01:CDS 35.0%
! TTAGTATTTTACCTTGGTGG+AGG + Chr1:4044443-4044462 None:intergenic 35.0%
!! ATGTGCTTTGTTGTTTAAGG+TGG - Chr1:4044557-4044576 MsG0180000292.01.T01:CDS 35.0%
!! GTTCTGTGCTCATATTTTGA+AGG + Chr1:4045702-4045721 None:intergenic 35.0%
!! TGTGCTTTGTTGTTTAAGGT+GGG - Chr1:4044558-4044577 MsG0180000292.01.T01:CDS 35.0%
AAAGTAATCCTGGCATGGTT+TGG + Chr1:4046407-4046426 None:intergenic 40.0%
ACTTCTCTTGATCGTTCCAA+GGG - Chr1:4044592-4044611 MsG0180000292.01.T01:CDS 40.0%
ATGCTAACTATGTTGGTCCA+TGG - Chr1:4045104-4045123 MsG0180000292.01.T01:intron 40.0%
CCACAAAGTGAAGATTGAAG+AGG - Chr1:4046701-4046720 MsG0180000292.01.T01:five_prime_UTR 40.0%
CCATTTGGAAGAAGTTGAAG+AGG + Chr1:4044382-4044401 None:intergenic 40.0%
CCTCTTCAACTTCTTCCAAA+TGG - Chr1:4044379-4044398 MsG0180000292.01.T01:CDS 40.0%
CCTCTTCAATCTTCACTTTG+TGG + Chr1:4046704-4046723 None:intergenic 40.0%
GAAAACAGCATAGACCCATT+TGG + Chr1:4044397-4044416 None:intergenic 40.0%
GAATGTGAGCAAAGGAAGAA+TGG - Chr1:4044813-4044832 MsG0180000292.01.T01:intron 40.0%
GAGATCAAAAAGGAAAGGCA+GGG - Chr1:4046748-4046767 MsG0180000292.01.T01:five_prime_UTR 40.0%
GGCTATCATGGAGAAATAGT+TGG + Chr1:4046559-4046578 None:intergenic 40.0%
GTGTCTATGCTAAGTCAGTT+TGG - Chr1:4046097-4046116 MsG0180000292.01.T01:CDS 40.0%
TCCATTGTGCAAAAAGAGTG+GGG + Chr1:4044294-4044313 None:intergenic 40.0%
TGCAAGAGAGAATGAAGCAA+GGG + Chr1:4044327-4044346 None:intergenic 40.0%
TGGTCTCTAAATATGTGGGT+CGG + Chr1:4046264-4046283 None:intergenic 40.0%
TTGCAAGAGAGAATGAAGCA+AGG + Chr1:4044328-4044347 None:intergenic 40.0%
TTGGAAGAAGTTGAAGAGGT+AGG + Chr1:4044378-4044397 None:intergenic 40.0%
TTGTTAGGCAAAGAAAGTGG+AGG + Chr1:4046639-4046658 None:intergenic 40.0%
TTTCAGTCCTCAATTGTGTG+AGG + Chr1:4045983-4046002 None:intergenic 40.0%
! ACAACCATAATGGAGTGAGT+GGG - Chr1:4044201-4044220 MsG0180000292.01.T01:CDS 40.0%
! ATTCAGGCATTCAGGTTAGT+TGG - Chr1:4045485-4045504 MsG0180000292.01.T01:intron 40.0%
! CAGCAGATAATGGTCACAAA+TGG - Chr1:4045053-4045072 MsG0180000292.01.T01:intron 40.0%
! GTTTAAGGTGGGAATTTGGA+GGG - Chr1:4044569-4044588 MsG0180000292.01.T01:CDS 40.0%
! TACAACCATAATGGAGTGAG+TGG - Chr1:4044200-4044219 MsG0180000292.01.T01:CDS 40.0%
! TGTTTAAGGTGGGAATTTGG+AGG - Chr1:4044568-4044587 MsG0180000292.01.T01:CDS 40.0%
! TTCAGGCATTCAGGTTAGTT+GGG - Chr1:4045486-4045505 MsG0180000292.01.T01:intron 40.0%
AACAGTGCCTCACACAATTG+AGG - Chr1:4045973-4045992 MsG0180000292.01.T01:intron 45.0%
ATCAAAAAGGAAAGGCAGGG+TGG - Chr1:4046751-4046770 MsG0180000292.01.T01:five_prime_UTR 45.0%
GAACATCAATGCCACCACTT+TGG - Chr1:4046610-4046629 MsG0180000292.01.T01:five_prime_UTR 45.0%
GACTTCTCTTGATCGTTCCA+AGG - Chr1:4044591-4044610 MsG0180000292.01.T01:CDS 45.0%
GCTGTCATTGCTGTCAAAGA+AGG - Chr1:4045633-4045652 MsG0180000292.01.T01:intron 45.0%
GGAGATCAAAAAGGAAAGGC+AGG - Chr1:4046747-4046766 MsG0180000292.01.T01:five_prime_UTR 45.0%
GGGAAAGTTGCAGCAGATAA+TGG - Chr1:4045043-4045062 MsG0180000292.01.T01:intron 45.0%
GGGTGTGATGCTAACTATGT+TGG - Chr1:4045097-4045116 MsG0180000292.01.T01:intron 45.0%
! AAAAAGAGTGGGGAGAGTGT+TGG + Chr1:4044284-4044303 None:intergenic 45.0%
! CAACCATAATGGAGTGAGTG+GGG - Chr1:4044202-4044221 MsG0180000292.01.T01:CDS 45.0%
! TCCCCACTCTTTTTGCACAA+TGG - Chr1:4044290-4044309 MsG0180000292.01.T01:CDS 45.0%
!! AAAAGAGTGGGGAGAGTGTT+GGG + Chr1:4044283-4044302 None:intergenic 45.0%
!! GGCATTGATGTTCCATTCTG+TGG + Chr1:4046603-4046622 None:intergenic 45.0%
!!! GGGTCTATGCTGTTTTCTGA+GGG - Chr1:4044400-4044419 MsG0180000292.01.T01:CDS 45.0%
!!! TGGGTCTATGCTGTTTTCTG+AGG - Chr1:4044399-4044418 MsG0180000292.01.T01:CDS 45.0%
!!! AAAAAAATTTTTTATAGTAT+AGG - Chr1:4044499-4044518 MsG0180000292.01.T01:CDS 5.0%
AACTGAAACTCCCATGCCCT+TGG + Chr1:4045463-4045482 None:intergenic 50.0%
CACGTATCTTTCCTCCACCA+AGG - Chr1:4044429-4044448 MsG0180000292.01.T01:CDS 50.0%
CTTGGTGGAGGAAAGATACG+TGG + Chr1:4044431-4044450 None:intergenic 50.0%
GAAAGTGGAGGTGACCAAAG+TGG + Chr1:4046627-4046646 None:intergenic 50.0%
GTACCCCACTCACTCCATTA+TGG + Chr1:4044208-4044227 None:intergenic 50.0%
TTTGACAGCAACCAAGGGCA+TGG - Chr1:4045449-4045468 MsG0180000292.01.T01:CDS 50.0%
! GTAATCCTGGCATGGTTTGG+AGG + Chr1:4046404-4046423 None:intergenic 50.0%
! TTGACAGCAACCAAGGGCAT+GGG - Chr1:4045450-4045469 MsG0180000292.01.T01:CDS 50.0%
AGCTACCTCCAAACCATGCC+AGG - Chr1:4046396-4046415 MsG0180000292.01.T01:intron 55.0%
AGTGGAGGTGACCAAAGTGG+TGG + Chr1:4046624-4046643 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
Chr1 gene 4044164 4046779 4044164 ID=MsG0180000292.01;Name=MsG0180000292.01
Chr1 mRNA 4044164 4046779 4044164 ID=MsG0180000292.01.T01;Parent=MsG0180000292.01;Name=MsG0180000292.01.T01;_AED=0.30;_eAED=0.36;_QI=201|0.83|0.85|1|0.33|0.42|7|0|346
Chr1 exon 4046493 4046779 4046493 ID=MsG0180000292.01.T01:exon:5675;Parent=MsG0180000292.01.T01
Chr1 exon 4046314 4046367 4046314 ID=MsG0180000292.01.T01:exon:5676;Parent=MsG0180000292.01.T01
Chr1 exon 4046036 4046167 4046036 ID=MsG0180000292.01.T01:exon:5677;Parent=MsG0180000292.01.T01
Chr1 exon 4045799 4045904 4045799 ID=MsG0180000292.01.T01:exon:5678;Parent=MsG0180000292.01.T01
Chr1 exon 4045445 4045486 4045445 ID=MsG0180000292.01.T01:exon:5679;Parent=MsG0180000292.01.T01
Chr1 exon 4045260 4045316 4045260 ID=MsG0180000292.01.T01:exon:5680;Parent=MsG0180000292.01.T01
Chr1 exon 4044164 4044727 4044164 ID=MsG0180000292.01.T01:exon:5681;Parent=MsG0180000292.01.T01
Chr1 five_prime_UTR 4046579 4046779 4046579 ID=MsG0180000292.01.T01:five_prime_utr;Parent=MsG0180000292.01.T01
Chr1 CDS 4046493 4046578 4046493 ID=MsG0180000292.01.T01:cds;Parent=MsG0180000292.01.T01
Chr1 CDS 4046314 4046367 4046314 ID=MsG0180000292.01.T01:cds;Parent=MsG0180000292.01.T01
Chr1 CDS 4046036 4046167 4046036 ID=MsG0180000292.01.T01:cds;Parent=MsG0180000292.01.T01
Chr1 CDS 4045799 4045904 4045799 ID=MsG0180000292.01.T01:cds;Parent=MsG0180000292.01.T01
Chr1 CDS 4045445 4045486 4045445 ID=MsG0180000292.01.T01:cds;Parent=MsG0180000292.01.T01
Chr1 CDS 4045260 4045316 4045260 ID=MsG0180000292.01.T01:cds;Parent=MsG0180000292.01.T01
Chr1 CDS 4044164 4044727 4044164 ID=MsG0180000292.01.T01:cds;Parent=MsG0180000292.01.T01
Gene Sequence

>MsG0180000292.01.T01

ATGCTCATTTCCTACCTCTTCAACTTCTTCCAAATGGGTCTATGCTGTTTTCTGAGGGTAGTACCACGTATCTTTCCTCCACCAAGGTGGGAATTTGGAGGGACTTCTCTTGATCGTTCCAAGGGAAATAAAAGAAATTGGATTATTGTATGGGAAGATGGATTCTGTGATTTTAATGAATGTGAGCAAAGGAAGAATGGATGCTTGAATGAAAGATTTGGAGCTGATGTATTCTTCAAAATGTCTCATGAGGTTTATAGTTATGGAGAAGGATTGGGGAAAGTTGCAGCAGATAATGGTCACAAATGGGTTTATAGTGACACTCAAAATGGGTGTGATGCTAACTATGTTGGTCCATGGAATGCTTCAATTGATCATCAACCAAGGGCATGGGAGTTTCAGTTAAATTCAGGCATTCAGACTATTGCTGTCATTGCTGTCAAAGAAGGCTTAGTACAACTTGGTTCATTTAACAAGATTTTCATTTTTGCAAGTTTAATACATTCGTGGACTATAGTCACACCGACCCACATATTTAGAGACCAAAATCACGATCTACTCAAATATTTCATATTTCTTGAAAATCATTATCAAATCACAAGTTGTGTTCAGATTGCAGAAGATCTTGATTTAGTGCTCAACATACAAAGGAAATTCAGCTACCTCCAAACCATGCCAGGATTACTTTCATTTCAAAGACCACAACACATACCATTTCAACATCCATGCATTACCAAACCAAATTTCCAAATGATGGAAAGCAATGAAGTTTCTAAGAACCATGTAACCAAACTTAATAACATGCAAGATGAAAGATCCAACTATTTCTCCATGATAGCCATAAACTTAGGTTTAAATCATCCACAGAATGGAACATCAATGCCACCACTTTGGTCACCTCCACTTTCTTTGCCTAACAATCACATTCAACTTCATGAAACAAATAGGATCAATAACACAAGCCACAAAGTGAAGATTGAAGAGGGCACATTTCATATTGCTAATTATGGAGATCAAAAAGGAAAGGCAGGGTGGTCCTAA

Protein sequence

>MsG0180000292.01.T01

MLISYLFNFFQMGLCCFLRVVPRIFPPPRWEFGGTSLDRSKGNKRNWIIVWEDGFCDFNECEQRKNGCLNERFGADVFFKMSHEVYSYGEGLGKVAADNGHKWVYSDTQNGCDANYVGPWNASIDHQPRAWEFQLNSGIQTIAVIAVKEGLVQLGSFNKIFIFASLIHSWTIVTPTHIFRDQNHDLLKYFIFLENHYQITSCVQIAEDLDLVLNIQRKFSYLQTMPGLLSFQRPQHIPFQHPCITKPNFQMMESNEVSKNHVTKLNNMQDERSNYFSMIAINLGLNHPQNGTSMPPLWSPPLSLPNNHIQLHETNRINNTSHKVKIEEGTFHIANYGDQKGKAGWS*