AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480018161.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480018161.01.T01 MTR_4g006730 99.016 305 3 0 1 305 1 305 0.0 606
MsG0480018161.01.T01 MTR_2g104940 82.581 310 46 3 1 305 4 310 5.05e-174 484
MsG0480018161.01.T01 MTR_4g006730 98.734 237 3 0 1 237 1 237 2.55e-169 470
MsG0480018161.01.T01 MTR_4g006730 100.000 218 0 0 88 305 1 218 2.39e-155 433
MsG0480018161.01.T01 MTR_4g006630 99.541 218 1 0 88 305 1 218 1.51e-154 431
MsG0480018161.01.T01 MTR_1g097840 59.574 282 111 2 7 288 9 287 2.01e-112 327
MsG0480018161.01.T01 MTR_1g097840 52.555 274 110 3 7 274 9 268 2.05e-84 255
MsG0480018161.01.T01 MTR_4g006650 92.908 141 1 1 76 216 5 136 4.68e-84 256
MsG0480018161.01.T01 MTR_8g087710 53.680 231 102 2 71 298 35 263 6.82e-78 239
MsG0480018161.01.T01 MTR_8g087720 53.744 227 100 2 75 298 38 262 6.09e-77 236
MsG0480018161.01.T01 MTR_2g017660 55.349 215 95 1 71 284 35 249 8.06e-74 228
MsG0480018161.01.T01 MTR_7g010650 46.311 244 129 1 61 304 23 264 3.04e-73 227
MsG0480018161.01.T01 MTR_2g017590 48.207 251 123 2 52 298 13 260 2.85e-72 224
MsG0480018161.01.T01 MTR_2g017620 48.207 251 123 2 52 298 1 248 1.25e-71 222
MsG0480018161.01.T01 MTR_2g017620 48.207 251 123 2 52 298 15 262 1.48e-71 222
MsG0480018161.01.T01 MTR_2g017570 51.261 238 107 3 71 305 34 265 2.13e-71 222
MsG0480018161.01.T01 MTR_2g017610 51.261 238 107 3 71 305 34 265 2.23e-71 222
MsG0480018161.01.T01 MTR_4g084880 46.269 268 128 5 50 305 5 268 1.32e-70 220
MsG0480018161.01.T01 MTR_5g079570 43.893 262 129 4 50 294 6 266 1.05e-61 197
MsG0480018161.01.T01 MTR_2g017620 53.261 184 79 2 119 298 1 181 2.03e-59 188
MsG0480018161.01.T01 MTR_3g008920 49.351 231 112 4 56 284 8 235 7.19e-59 189
MsG0480018161.01.T01 MTR_5g063930 45.116 215 112 2 75 285 37 249 1.75e-58 188
MsG0480018161.01.T01 MTR_8g087720 55.422 166 69 2 75 237 38 201 1.49e-51 169
MsG0480018161.01.T01 MTR_1g070385 40.909 220 130 0 73 292 60 279 3.70e-46 166
MsG0480018161.01.T01 MTR_7g010650 45.223 157 86 0 61 217 23 179 3.22e-40 139
MsG0480018161.01.T01 MTR_8g087720 53.425 146 63 2 75 217 38 181 9.20e-40 138
MsG0480018161.01.T01 MTR_2g101370 36.889 225 122 6 79 289 24 242 4.94e-32 119
MsG0480018161.01.T01 MTR_1g006490 37.073 205 109 7 80 272 24 220 9.38e-30 113
MsG0480018161.01.T01 MTR_8g013680 36.232 207 114 5 79 272 23 224 2.94e-28 109
MsG0480018161.01.T01 MTR_1g006590 35.610 205 112 7 80 272 24 220 6.30e-26 103
MsG0480018161.01.T01 MTR_1g077540 34.404 218 135 3 79 288 25 242 5.79e-25 101
MsG0480018161.01.T01 MTR_5g012810 35.122 205 118 4 79 272 23 223 1.45e-23 97.1
MsG0480018161.01.T01 MTR_6g069040 32.110 218 140 3 79 288 25 242 2.31e-23 96.7
MsG0480018161.01.T01 MTR_2g094270 30.258 271 147 8 68 304 22 284 6.33e-21 90.9
MsG0480018161.01.T01 MTR_3g118010 29.545 264 151 9 68 304 19 274 8.02e-21 90.5
MsG0480018161.01.T01 MTR_1g115405 29.817 218 145 3 79 288 25 242 1.48e-20 89.0
MsG0480018161.01.T01 MTR_4g063090 31.188 202 131 3 80 273 26 227 1.92e-19 85.9
MsG0480018161.01.T01 MTR_7g103030 33.981 206 119 5 79 272 25 225 4.46e-19 85.1
MsG0480018161.01.T01 MTR_7g101190 27.407 270 155 8 68 304 21 282 2.68e-18 83.6
MsG0480018161.01.T01 MTR_3g070210 28.279 244 147 8 68 283 37 280 1.47e-17 81.6
MsG0480018161.01.T01 MTR_2g094270 30.804 224 124 6 68 260 22 245 2.05e-17 80.9
MsG0480018161.01.T01 MTR_8g098375 28.936 235 137 9 68 273 34 267 1.37e-16 78.6
MsG0480018161.01.T01 MTR_2g060360 28.870 239 149 6 79 304 23 253 3.13e-16 77.0
MsG0480018161.01.T01 MTR_4g415300 28.302 212 134 6 79 273 60 270 5.24e-16 77.0
MsG0480018161.01.T01 MTR_5g010150 28.302 212 135 6 79 273 56 267 8.17e-16 76.6
MsG0480018161.01.T01 MTR_7g023350 27.523 218 150 3 79 288 25 242 1.12e-15 75.5
MsG0480018161.01.T01 MTR_4g059390 25.517 290 171 8 50 304 3 282 1.76e-15 75.5
MsG0480018161.01.T01 MTR_5g082070 26.923 234 143 7 68 273 37 270 2.32e-15 75.1
MsG0480018161.01.T01 MTR_3g070210 28.959 221 131 8 68 263 37 256 1.03e-14 73.2
MsG0480018161.01.T01 MTR_0793s0010 100.000 26 0 0 280 305 30 55 4.41e-11 57.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480018161.01.T01 AT1G80760 75.806 310 65 5 1 305 1 305 2.81e-159 446
MsG0480018161.01.T01 AT4G10380 73.684 228 58 1 63 288 64 291 9.28e-116 336
MsG0480018161.01.T01 AT4G19030 46.643 283 140 4 33 304 10 292 6.57e-76 234
MsG0480018161.01.T01 AT5G37820 47.967 246 124 3 55 298 24 267 6.53e-72 224
MsG0480018161.01.T01 AT4G18910 44.178 292 143 5 29 304 2 289 9.97e-72 223
MsG0480018161.01.T01 AT5G37820 47.967 246 124 3 55 298 60 303 1.69e-71 224
MsG0480018161.01.T01 AT5G37810 47.347 245 125 3 56 298 25 267 2.32e-69 217
MsG0480018161.01.T01 AT1G31885 44.141 256 128 3 48 295 23 271 6.65e-66 209
MsG0480018161.01.T01 AT1G31885 47.005 217 107 2 87 295 1 217 1.24e-60 194
MsG0480018161.01.T01 AT2G34390 40.942 276 144 6 43 305 13 282 2.21e-55 181
MsG0480018161.01.T01 AT2G34390 43.882 237 117 5 79 305 10 240 1.35e-52 173
MsG0480018161.01.T01 AT4G19030 46.977 215 103 4 33 236 10 224 2.06e-52 172
MsG0480018161.01.T01 AT4G18910 44.889 225 104 5 29 237 2 222 1.10e-48 162
MsG0480018161.01.T01 AT3G06100 37.736 212 131 1 75 285 46 257 6.14e-42 146
MsG0480018161.01.T01 AT4G19030 44.898 196 97 4 33 217 10 205 1.63e-41 143
MsG0480018161.01.T01 AT3G06100 37.850 214 126 3 79 288 2 212 2.18e-41 143
MsG0480018161.01.T01 AT2G34390 39.423 208 110 4 43 237 13 217 3.22e-35 127
MsG0480018161.01.T01 AT3G16240 37.198 207 112 5 79 272 23 224 1.06e-30 116
MsG0480018161.01.T01 AT2G34390 37.895 190 102 4 43 219 13 199 5.12e-28 108
MsG0480018161.01.T01 AT2G25810 34.928 209 118 6 75 272 19 220 1.68e-27 107
MsG0480018161.01.T01 AT2G29870 47.826 115 57 1 191 305 22 133 5.08e-26 100
MsG0480018161.01.T01 AT5G47450 34.361 227 123 7 79 284 23 244 2.35e-25 102
MsG0480018161.01.T01 AT4G17340 33.816 207 119 5 79 272 23 224 3.88e-24 99.0
MsG0480018161.01.T01 AT3G26520 32.314 229 136 5 79 294 26 248 1.02e-21 92.4
MsG0480018161.01.T01 AT2G36830 33.816 207 119 5 79 272 25 226 5.64e-21 90.1
MsG0480018161.01.T01 AT4G35100 29.242 277 161 9 55 304 7 275 8.01e-20 87.8
MsG0480018161.01.T01 AT4G35100 29.242 277 161 9 55 304 7 275 8.01e-20 87.8
MsG0480018161.01.T01 AT3G06100 33.813 139 91 1 151 288 41 179 1.09e-19 85.5
MsG0480018161.01.T01 AT5G60660 27.132 258 153 7 50 273 3 259 2.07e-18 84.0
MsG0480018161.01.T01 AT2G16850 28.731 268 148 9 68 304 18 273 2.33e-18 83.6
MsG0480018161.01.T01 AT1G17810 30.357 224 139 6 79 287 28 249 9.66e-18 81.6
MsG0480018161.01.T01 AT1G73190 27.803 223 148 3 79 288 28 250 1.24e-17 81.3
MsG0480018161.01.T01 AT4G01470 29.808 208 128 5 79 273 25 227 1.50e-17 80.9
MsG0480018161.01.T01 AT3G53420 26.568 271 156 8 68 304 21 282 1.04e-16 79.0
MsG0480018161.01.T01 AT3G53420 26.568 271 156 8 68 304 21 282 1.04e-16 79.0
MsG0480018161.01.T01 AT4G00430 29.060 234 137 8 68 273 35 267 1.07e-16 79.0
MsG0480018161.01.T01 AT2G37170 26.568 271 156 8 68 304 19 280 1.14e-16 79.0
MsG0480018161.01.T01 AT1G31885 43.678 87 49 0 65 151 33 119 1.33e-16 75.5
MsG0480018161.01.T01 AT4G23400 29.717 212 131 6 79 273 57 267 1.47e-16 78.6
MsG0480018161.01.T01 AT3G54820 29.259 270 150 8 68 304 20 281 2.09e-16 78.2
MsG0480018161.01.T01 AT2G37170 26.568 271 156 8 68 304 62 323 2.14e-16 79.0
MsG0480018161.01.T01 AT1G01620 29.717 212 131 6 79 273 56 266 2.38e-16 78.2
MsG0480018161.01.T01 AT2G45960 29.487 234 136 8 68 273 34 266 2.86e-16 77.8
MsG0480018161.01.T01 AT3G61430 30.516 213 128 7 79 273 56 266 1.53e-15 75.9
MsG0480018161.01.T01 AT3G61430 30.516 213 128 7 79 273 56 266 1.53e-15 75.9
MsG0480018161.01.T01 AT2G37180 26.199 271 157 8 68 304 19 280 2.72e-15 75.1
MsG0480018161.01.T01 AT2G39010 27.431 288 166 9 50 304 4 281 5.89e-14 71.2
MsG0480018161.01.T01 AT3G47440 27.477 222 146 5 79 289 27 244 8.34e-14 70.5
MsG0480018161.01.T01 AT2G45960 30.093 216 125 7 68 258 34 248 8.64e-14 70.5
MsG0480018161.01.T01 AT2G45960 30.093 216 125 7 68 258 34 248 1.16e-13 70.5
MsG0480018161.01.T01 AT1G01620 30.726 179 109 5 109 273 17 194 1.53e-13 68.9

Find 98 sgRNAs with CRISPR-Local

Find 256 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCATGTGGCCTCTGGGTATT+TGG 0.110117 4:-1050339 MsG0480018161.01.T01:three_prime_UTR
TTATCAACTGGTCACATTTC+TGG 0.140657 4:-1053963 MsG0480018161.01.T01:CDS
AAATGAAACCTCGGAATTAT+TGG 0.187935 4:+1050130 None:intergenic
TTGTCTTGATATATGTTTAT+TGG 0.226215 4:+1054882 None:intergenic
TCCTGTCCCTCTTGCCAAAA+AGG 0.248434 4:-1054573 MsG0480018161.01.T01:intron
TCTGGGTATTTGGGTTTAAT+AGG 0.249558 4:-1050329 MsG0480018161.01.T01:three_prime_UTR
GCTGGTCCTAGTGTTCTTAC+TGG 0.259920 4:+1050826 None:intergenic
TTTCTGAGTTATGTATCTTT+TGG 0.287885 4:+1054036 None:intergenic
CATAACTCAGAAACACTAAT+TGG 0.296495 4:-1054026 MsG0480018161.01.T01:CDS
GCCCCTATTCTTGGTGCTCT+TGG 0.301422 4:-1050760 MsG0480018161.01.T01:CDS
TTCATTGAAGCTCCAGTTGC+AGG 0.320017 4:+1050850 None:intergenic
CATGTGGCCTCTGGGTATTT+GGG 0.321412 4:-1050338 MsG0480018161.01.T01:three_prime_UTR
GTTCTCTAGCATGTGGCCTC+TGG 0.323008 4:-1050347 MsG0480018161.01.T01:three_prime_UTR
GTATATTGCTGCACAAGTTT+TGG 0.323183 4:-1053768 MsG0480018161.01.T01:CDS
CATCATCTTCTGAAACTTCC+AGG 0.332213 4:+1050664 None:intergenic
CCAGGAGTACCTGGGGTAGC+AGG 0.347255 4:+1054743 None:intergenic
CAGGTTGGAGCAGAGTTTAT+AGG 0.354046 4:-1054104 MsG0480018161.01.T01:CDS
CTTGGTGCTCTTGGTGGGGC+AGG 0.355406 4:-1050751 MsG0480018161.01.T01:CDS
TATCTCATAGCCCCTATTCT+TGG 0.361100 4:-1050769 MsG0480018161.01.T01:CDS
GTTTGAGAGTGATTAGAGTA+TGG 0.362152 4:-1054798 MsG0480018161.01.T01:exon
ACGGTTCCTTCAGTTGAATA+TGG 0.365783 4:-1053683 MsG0480018161.01.T01:CDS
CACCAAGAGCACCAAGAATA+GGG 0.367072 4:+1050758 None:intergenic
CCTGGGGTAGCAGGGGTAGA+AGG 0.377162 4:+1054752 None:intergenic
ATATACTGCAGGCCTGCAAC+TGG 0.394672 4:-1050862 MsG0480018161.01.T01:intron
TAGTTGTTTGCAGCAATTGC+TGG 0.400189 4:+1050808 None:intergenic
ATGCTCAACATACTCATTGC+TGG 0.401599 4:-1051456 MsG0480018161.01.T01:CDS
TTGGCAAGAGGGACAGGAGG+GGG 0.402167 4:+1054578 None:intergenic
CCTATTCTTGGTGCTCTTGG+TGG 0.402986 4:-1050757 MsG0480018161.01.T01:CDS
CCACCAAGAGCACCAAGAAT+AGG 0.407883 4:+1050757 None:intergenic
ATTGGATGTGCTGGAGCTAC+TGG 0.408901 4:-1054008 MsG0480018161.01.T01:CDS
CTATTCTTGGTGCTCTTGGT+GGG 0.417084 4:-1050756 MsG0480018161.01.T01:CDS
AGAGGAGCACCAGGAGTACC+TGG 0.426312 4:+1054734 None:intergenic
GGCAAAGAGCAAGTGACTTT+AGG 0.427110 4:+1054602 None:intergenic
TTCTGGTGCTCATCTTAATC+CGG 0.430743 4:-1053946 MsG0480018161.01.T01:CDS
ACATACATTCTAATGTTTGC+TGG 0.431868 4:-1054080 MsG0480018161.01.T01:CDS
ATACAAAGATTCTAATTAAG+AGG 0.432938 4:+1050604 None:intergenic
GGCTTCAAATCTGAGAGAAC+TGG 0.434296 4:-1054704 MsG0480018161.01.T01:CDS
ATGCAGGTGGGAGAACTTGC+GGG 0.438650 4:-1051501 MsG0480018161.01.T01:intron
TTCTCTAGCATGTGGCCTCT+GGG 0.447929 4:-1050346 MsG0480018161.01.T01:three_prime_UTR
AGAGAACTGGAAATGGTAGA+AGG 0.448607 4:-1054691 MsG0480018161.01.T01:CDS
TTACTTACGCTATCTCTAGT+AGG 0.455054 4:+1050245 None:intergenic
GAAGATTTGACTTTGGAAGA+TGG 0.456341 4:-1054632 MsG0480018161.01.T01:CDS
CCTGCTACCCCAGGTACTCC+TGG 0.460634 4:-1054743 MsG0480018161.01.T01:CDS
AAATCTGAGAGAACTGGAAA+TGG 0.466281 4:-1054698 MsG0480018161.01.T01:CDS
CTGATTTATGTTTATCAAAG+TGG 0.466449 4:+1050476 None:intergenic
CTGCATTAAAACACTTCCCA+TGG 0.472333 4:-1053905 MsG0480018161.01.T01:CDS
TCAGAGTTAAACTCTTCATC+AGG 0.475612 4:+1050706 None:intergenic
GAAACACTAATTGGATGTGC+TGG 0.482781 4:-1054017 MsG0480018161.01.T01:CDS
CAAACAACTACAAAGGCATA+TGG 0.493499 4:-1050795 MsG0480018161.01.T01:CDS
GTGACACCACCACTCATGAA+TGG 0.510613 4:+1053704 None:intergenic
GTGTGCATATGTAGATAGCT+AGG 0.513313 4:+1050514 None:intergenic
TATTCTTGGTGCTCTTGGTG+GGG 0.515515 4:-1050755 MsG0480018161.01.T01:CDS
CAGGAGTACCTGGGGTAGCA+GGG 0.521311 4:+1054744 None:intergenic
ATCATCTTCTGAAACTTCCA+GGG 0.521569 4:+1050665 None:intergenic
GAAACTTCCAGGGGCAGAAG+AGG 0.526255 4:+1050675 None:intergenic
GTTAAAGCCTCTTCTGCCCC+TGG 0.527500 4:-1050682 MsG0480018161.01.T01:CDS
TTTCATCCATTCATGAGTGG+TGG 0.532048 4:-1053710 MsG0480018161.01.T01:CDS
TGCTCAACATACTCATTGCT+GGG 0.532589 4:-1051455 MsG0480018161.01.T01:intron
TAGTGTTGAAGATTTGACTT+TGG 0.533602 4:-1054639 MsG0480018161.01.T01:CDS
TAAACTCTAAAGCAAAAGCT+TGG 0.536190 4:+1053660 None:intergenic
CTAACACAATTATATTCTCA+TGG 0.549266 4:+1050288 None:intergenic
GAACTTGCGGGAATCGCGGT+GGG 0.555721 4:-1051489 MsG0480018161.01.T01:CDS
CCTTCTACCCCTGCTACCCC+AGG 0.557794 4:-1054752 MsG0480018161.01.T01:CDS
GCAGGGGTAGAAGGTACTGA+TGG 0.572195 4:+1054761 None:intergenic
GCAAATGAAATCGTGACGGC+CGG 0.573435 4:+1053927 None:intergenic
GCTTGGCCATATTCAACTGA+AGG 0.575237 4:+1053677 None:intergenic
GGGAGAACTTGCGGGAATCG+CGG 0.575910 4:-1051493 MsG0480018161.01.T01:CDS
TTGATTAGAGAGTGAGAGAG+AGG 0.577047 4:+1054832 None:intergenic
TGATTAGAGTATGGACAATG+AGG 0.583019 4:-1054789 MsG0480018161.01.T01:exon
AGAGCAAGTGACTTTAGGTA+AGG 0.585846 4:+1054607 None:intergenic
AGAACTTGCGGGAATCGCGG+TGG 0.586192 4:-1051490 MsG0480018161.01.T01:CDS
ATGAATCCAGTAAGAACACT+AGG 0.586393 4:-1050832 MsG0480018161.01.T01:CDS
ATTCATGAGTGGTGGTGTCA+CGG 0.586869 4:-1053702 MsG0480018161.01.T01:CDS
AATGAAATCCAATAATTCCG+AGG 0.591423 4:-1050138 MsG0480018161.01.T01:three_prime_UTR
AATGCAGGTGGGAGAACTTG+CGG 0.593498 4:-1051502 MsG0480018161.01.T01:intron
AGAATATAATTGTGTTAGTG+AGG 0.594123 4:-1050283 MsG0480018161.01.T01:three_prime_UTR
ACCAAGAGCACCAAGAATAG+GGG 0.596229 4:+1050759 None:intergenic
GACATTAGTTCTCTAGCATG+TGG 0.604049 4:-1050354 MsG0480018161.01.T01:three_prime_UTR
AGGAGTACCTGGGGTAGCAG+GGG 0.604848 4:+1054745 None:intergenic
TTTGGCAAGAGGGACAGGAG+GGG 0.604963 4:+1054577 None:intergenic
GAGGAGCACCAGGAGTACCT+GGG 0.605523 4:+1054735 None:intergenic
AGGAGCACCAGGAGTACCTG+GGG 0.605545 4:+1054736 None:intergenic
TGATGAAGAGTTTAACTCTG+AGG 0.607367 4:-1050704 MsG0480018161.01.T01:CDS
CATGTTTGTTGTCACTGCAG+TGG 0.612813 4:-1053621 MsG0480018161.01.T01:CDS
TGTGCATATGTAGATAGCTA+GGG 0.612996 4:+1050515 None:intergenic
TATTTGTAGCATCAATCTCA+AGG 0.615683 4:-1054855 MsG0480018161.01.T01:five_prime_UTR
CTAGTAGGAGTAATAAACAA+TGG 0.619461 4:+1050260 None:intergenic
CAGGGGTAGAAGGTACTGAT+GGG 0.623548 4:+1054762 None:intergenic
GTATTTCCGAGACAAAATGA+AGG 0.640064 4:-1050188 MsG0480018161.01.T01:three_prime_UTR
TGCAGCAAATGAAATCGTGA+CGG 0.654771 4:+1053923 None:intergenic
TCATCTTCTGAAACTTCCAG+GGG 0.658967 4:+1050666 None:intergenic
ACTCACAGCTCTAGTGTCGG+TGG 0.669616 4:+1053598 None:intergenic
ATTGCTGCAAACAACTACAA+AGG 0.670460 4:-1050802 MsG0480018161.01.T01:CDS
TATACTCACAGCTCTAGTGT+CGG 0.674024 4:+1053595 None:intergenic
ACTTGTGCAGCAATATACAA+AGG 0.678381 4:+1053773 None:intergenic
AAGATGATGAATCATTCACA+AGG 0.712240 4:-1050650 MsG0480018161.01.T01:exon
GAGTATGTTGAGCATGACAG+TGG 0.737398 4:+1051464 None:intergenic
TATTAAACCCAAATACCCAG+AGG 0.772671 4:+1050331 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAATAAAAATATATATTTAA+TGG + Chr4:1053682-1053701 None:intergenic 0.0%
!! TTTAATATTATAGAGAATTA+CGG - Chr4:1050538-1050557 MsG0480018161.01.T01:three_prime_UTR 10.0%
!!! TAATTTTGTGAATTAATTTT+AGG - Chr4:1051201-1051220 MsG0480018161.01.T01:intron 10.0%
!! AAAGTTCTTATAAAAGAATA+TGG + Chr4:1051447-1051466 None:intergenic 15.0%
!! AAATGCTATTAAAATTAAGT+AGG - Chr4:1053206-1053225 MsG0480018161.01.T01:intron 15.0%
!! AAATGCTATTAAAATTAAGT+AGG + Chr4:1053225-1053206 None:intergenic 15.0%
!! AATGCTATTAAAATTAAGTA+GGG - Chr4:1053207-1053226 MsG0480018161.01.T01:intron 15.0%
!! AATGCTATTAAAATTAAGTA+GGG + Chr4:1053226-1053207 None:intergenic 15.0%
!! AATTCCACTTATTTAATTAT+AGG - Chr4:1052716-1052735 MsG0480018161.01.T01:intron 15.0%
!! AGATAAAAAGTAATAAAATC+TGG + Chr4:1052983-1053002 None:intergenic 15.0%
!! ATAATTAGAAAGAAATAAAG+AGG - Chr4:1051645-1051664 MsG0480018161.01.T01:intron 15.0%
!! ATTCCACTTATTTAATTATA+GGG - Chr4:1052717-1052736 MsG0480018161.01.T01:intron 15.0%
!! TAATTAGAAAGAAATAAAGA+GGG - Chr4:1051646-1051665 MsG0480018161.01.T01:intron 15.0%
!! TTCAAAAATTTAAGAGTTTA+AGG - Chr4:1053115-1053134 MsG0480018161.01.T01:intron 15.0%
!! TTCAAACACAATATAATTAA+GGG + Chr4:1053281-1053300 None:intergenic 15.0%
!! TTTCAAACACAATATAATTA+AGG + Chr4:1053282-1053301 None:intergenic 15.0%
!!! AAACAAATTTTAATTGAGTA+GGG + Chr4:1052853-1052872 None:intergenic 15.0%
!!! AGTTTTGATAAATTACAATT+TGG - Chr4:1053360-1053379 MsG0480018161.01.T01:intron 15.0%
!!! ATACTTTGTTTAAGAAAATA+AGG - Chr4:1051581-1051600 MsG0480018161.01.T01:intron 15.0%
!!! TAAAACATTTTAAATTCTTG+AGG + Chr4:1050342-1050361 None:intergenic 15.0%
!!! TAAACAAATTTTAATTGAGT+AGG + Chr4:1052854-1052873 None:intergenic 15.0%
!!! TAAACTCTTAAATTTTTGAA+CGG + Chr4:1052902-1052883 None:intergenic 15.0%
!! AAGATATCAAAAGTAATGAT+TGG + Chr4:1051728-1051747 None:intergenic 20.0%
!! AATTATATCAAGTACATCAT+TGG - Chr4:1050810-1050829 MsG0480018161.01.T01:CDS 20.0%
!! ATACAAAGATTCTAATTAAG+AGG + Chr4:1054398-1054417 None:intergenic 20.0%
!! CAGATCAATATATCAAAAAT+AGG + Chr4:1050855-1050874 None:intergenic 20.0%
!! CATTGGTAAAAAAGTTAATA+GGG - Chr4:1050827-1050846 MsG0480018161.01.T01:CDS 20.0%
!! GAATACATTAAGTTTATGTT+TGG - Chr4:1050583-1050602 MsG0480018161.01.T01:three_prime_UTR 20.0%
!! TAACCCTATAATTAAATAAG+TGG + Chr4:1052723-1052742 None:intergenic 20.0%
!! TCATTGGTAAAAAAGTTAAT+AGG - Chr4:1050826-1050845 MsG0480018161.01.T01:CDS 20.0%
!! TGATTAATGTAATTATTACC+AGG - Chr4:1050876-1050895 MsG0480018161.01.T01:intron 20.0%
!! TGTCAAAAAAAACAATAACA+TGG + Chr4:1053422-1053441 None:intergenic 20.0%
!! TTGTCTTGATATATGTTTAT+TGG + Chr4:1050120-1050139 None:intergenic 20.0%
!! TTTAAATCATTGCATATGTA+TGG + Chr4:1050499-1050518 None:intergenic 20.0%
!! TTTAAGTACATGTTGAAATT+AGG + Chr4:1050713-1050732 None:intergenic 20.0%
!!! AATTTTGCGATAATTTTTTG+CGG + Chr4:1052948-1052967 None:intergenic 20.0%
!!! ATGATCATAATTTTATCAAC+TGG - Chr4:1051024-1051043 MsG0480018161.01.T01:intron 20.0%
!!! GTATAACTTTTATCAAAATC+TGG - Chr4:1050661-1050680 MsG0480018161.01.T01:exon 20.0%
!!! GTTAATTAAATGTACCTTTT+TGG + Chr4:1050443-1050462 None:intergenic 20.0%
!!! GTTATTGTTTTTTTTGACAA+AGG - Chr4:1053423-1053442 MsG0480018161.01.T01:intron 20.0%
!!! GTTTATATCATTTGTTTTGT+CGG + Chr4:1053866-1053885 None:intergenic 20.0%
!!! TAAAGGTACAATTGTATATA+TGG - Chr4:1051897-1051916 MsG0480018161.01.T01:intron 20.0%
!!! TAGTCTTGCATATATATTTT+TGG - Chr4:1051466-1051485 MsG0480018161.01.T01:CDS 20.0%
!!! TCTTTTTGGATTCAATTTTA+AGG + Chr4:1052131-1052150 None:intergenic 20.0%
!!! TTTATATCATTTGTTTTGTC+GGG + Chr4:1053865-1053884 None:intergenic 20.0%
!!! TTTTATATATCCATTTAGTG+AGG + Chr4:1052230-1052249 None:intergenic 20.0%
! AAAGATCCAATATTCCATTT+AGG - Chr4:1053901-1053920 MsG0480018161.01.T01:CDS 25.0%
! AAATACATACACGTAAAAAC+AGG + Chr4:1054042-1054061 None:intergenic 25.0%
! AAATACGTTGCAAATTCTTA+AGG - Chr4:1053750-1053769 MsG0480018161.01.T01:CDS 25.0%
! AATACTAACATATGTCCTTA+TGG - Chr4:1051962-1051981 MsG0480018161.01.T01:intron 25.0%
! AGAATATAATTGTGTTAGTG+AGG - Chr4:1054716-1054735 MsG0480018161.01.T01:CDS 25.0%
! AGTGCAGAAAAACAAAATTA+GGG + Chr4:1052820-1052839 None:intergenic 25.0%
! ATGTTCATTGATACAATTAG+TGG + Chr4:1052267-1052286 None:intergenic 25.0%
! CGAATGTGATTAAAATAATG+AGG + Chr4:1053588-1053607 None:intergenic 25.0%
! CTAACACAATTATATTCTCA+TGG + Chr4:1054714-1054733 None:intergenic 25.0%
! CTAGACACTAAAATATTTAG+TGG - Chr4:1053821-1053840 MsG0480018161.01.T01:intron 25.0%
! CTGATTTATGTTTATCAAAG+TGG + Chr4:1054526-1054545 None:intergenic 25.0%
! GAAATTCAGACATGTAAAAA+AGG - Chr4:1054008-1054027 MsG0480018161.01.T01:CDS 25.0%
! GCAAAAATAAAATGAAACCT+CGG + Chr4:1054881-1054900 None:intergenic 25.0%
! TAATGTAATTATTACCAGGT+TGG - Chr4:1050880-1050899 MsG0480018161.01.T01:intron 25.0%
! TCTATACTGATAATAGTTGA+AGG - Chr4:1052324-1052343 MsG0480018161.01.T01:intron 25.0%
! TGTTGAAATTAGGATGAATT+TGG + Chr4:1050703-1050722 None:intergenic 25.0%
! TTTGTGAAATCAATTTCTGA+TGG + Chr4:1051858-1051877 None:intergenic 25.0%
!! TACAAGGTCACTATTTTATA+GGG + Chr4:1052760-1052779 None:intergenic 25.0%
!! TTACAAGGTCACTATTTTAT+AGG + Chr4:1052761-1052780 None:intergenic 25.0%
!! TTTCTGAGTTATGTATCTTT+TGG + Chr4:1050966-1050985 None:intergenic 25.0%
!!! AAAACAGCACTGATTTTTTT+TGG + Chr4:1054601-1054620 None:intergenic 25.0%
!!! AATCAAACTTTGTTTTAGCA+GGG - Chr4:1053144-1053163 MsG0480018161.01.T01:intron 25.0%
!!! TAATCAAACTTTGTTTTAGC+AGG - Chr4:1053143-1053162 MsG0480018161.01.T01:intron 25.0%
!!! TTGTTGTTACATTTTTCCAT+GGG + Chr4:1051113-1051132 None:intergenic 25.0%
!!! TTTGTTGTTACATTTTTCCA+TGG + Chr4:1051114-1051133 None:intergenic 25.0%
AAATAATGAGGAGTGAAAGT+TGG + Chr4:1053576-1053595 None:intergenic 30.0%
AAATATCTCACTGCAAAACA+TGG + Chr4:1052301-1052320 None:intergenic 30.0%
AAATGAAACCTCGGAATTAT+TGG + Chr4:1054872-1054891 None:intergenic 30.0%
AACATGAACATGTAGAAACA+CGG - Chr4:1052445-1052464 MsG0480018161.01.T01:intron 30.0%
AAGATGATGAATCATTCACA+AGG - Chr4:1054349-1054368 MsG0480018161.01.T01:intron 30.0%
AATACTTTCATGACATTGCT+TGG + Chr4:1052593-1052612 None:intergenic 30.0%
AATGAAATCCAATAATTCCG+AGG - Chr4:1054861-1054880 MsG0480018161.01.T01:five_prime_UTR 30.0%
ACATACATTCTAATGTTTGC+TGG - Chr4:1050919-1050938 MsG0480018161.01.T01:intron 30.0%
AGGAAATGCAAATAAACAAG+AGG - Chr4:1051601-1051620 MsG0480018161.01.T01:intron 30.0%
ATACTTTCATGACATTGCTT+GGG + Chr4:1052592-1052611 None:intergenic 30.0%
CAAGATTAGAACACTATGAA+AGG + Chr4:1053080-1053099 None:intergenic 30.0%
CACAATTCAAATAGTAGTTG+TGG - Chr4:1050741-1050760 MsG0480018161.01.T01:CDS 30.0%
CAGTGCAGAAAAACAAAATT+AGG + Chr4:1052821-1052840 None:intergenic 30.0%
CATAACTCAGAAACACTAAT+TGG - Chr4:1050973-1050992 MsG0480018161.01.T01:intron 30.0%
CTAGTAGGAGTAATAAACAA+TGG + Chr4:1054742-1054761 None:intergenic 30.0%
GTACACTAACAAATACCATA+AGG + Chr4:1051980-1051999 None:intergenic 30.0%
GTTAACTCTTAAAGCAAATG+AGG + Chr4:1053798-1053817 None:intergenic 30.0%
GTTGATATATATGAGACAGA+GGG + Chr4:1052634-1052653 None:intergenic 30.0%
TATTTGTAGCATCAATCTCA+AGG - Chr4:1050144-1050163 MsG0480018161.01.T01:three_prime_UTR 30.0%
TGTTGATATATATGAGACAG+AGG + Chr4:1052635-1052654 None:intergenic 30.0%
TTAATGTCGATAATGACTTG+TGG - Chr4:1053463-1053482 MsG0480018161.01.T01:intron 30.0%
TTTGACACTAAATATACTGC+AGG - Chr4:1054126-1054145 MsG0480018161.01.T01:intron 30.0%
! CATATTCCTTCATTTTGTCT+CGG + Chr4:1054820-1054839 None:intergenic 30.0%
! TAGTGTTGAAGATTTGACTT+TGG - Chr4:1050360-1050379 MsG0480018161.01.T01:three_prime_UTR 30.0%
! TTTTCTTATCTCACACTTCT+CGG - Chr4:1053962-1053981 MsG0480018161.01.T01:CDS 30.0%
!! TAAACTCTAAAGCAAAAGCT+TGG + Chr4:1051342-1051361 None:intergenic 30.0%
!! TACAAGGTCGCTATTTTATA+GGG - Chr4:1053238-1053257 MsG0480018161.01.T01:intron 30.0%
!! TTACAAGGTCGCTATTTTAT+AGG - Chr4:1053237-1053256 MsG0480018161.01.T01:intron 30.0%
AAATCTGAGAGAACTGGAAA+TGG - Chr4:1050301-1050320 MsG0480018161.01.T01:three_prime_UTR 35.0%
AAGTAGGGACTAAACTTACA+AGG - Chr4:1053222-1053241 MsG0480018161.01.T01:intron 35.0%
AAGTAGGGACTAAACTTACA+AGG + Chr4:1053241-1053222 None:intergenic 35.0%
ACAAGGCCTAAATGGAATAT+TGG + Chr4:1053910-1053929 None:intergenic 35.0%
ACATGAACATGTAGAAACAC+GGG - Chr4:1052446-1052465 MsG0480018161.01.T01:intron 35.0%
ACTTGTGCAGCAATATACAA+AGG + Chr4:1051229-1051248 None:intergenic 35.0%
ATACAACTATGACACCAAAG+TGG + Chr4:1052474-1052493 None:intergenic 35.0%
ATCTTATGATTCAAGCCACT+AGG - Chr4:1051743-1051762 MsG0480018161.01.T01:intron 35.0%
ATGAATCCAGTAAGAACACT+AGG - Chr4:1054167-1054186 MsG0480018161.01.T01:intron 35.0%
ATTGCTGCAAACAACTACAA+AGG - Chr4:1054197-1054216 MsG0480018161.01.T01:intron 35.0%
CGTTGCAAATTCTTAAGGTA+TGG - Chr4:1053755-1053774 MsG0480018161.01.T01:CDS 35.0%
CTACATGTTCATGTTCAGTA+AGG + Chr4:1052440-1052459 None:intergenic 35.0%
GCAAACAATAAGATCCTGTT+AGG + Chr4:1053935-1053954 None:intergenic 35.0%
GTATTTCCGAGACAAAATGA+AGG - Chr4:1054811-1054830 MsG0480018161.01.T01:five_prime_UTR 35.0%
GTGTCATAGTTGTATGTCAT+TGG - Chr4:1052479-1052498 MsG0480018161.01.T01:intron 35.0%
GTTTGAGAGTGATTAGAGTA+TGG - Chr4:1050201-1050220 MsG0480018161.01.T01:three_prime_UTR 35.0%
TAAGATCCTGTTAGGAAACA+AGG + Chr4:1053927-1053946 None:intergenic 35.0%
TATTAAACCCAAATACCCAG+AGG + Chr4:1054671-1054690 None:intergenic 35.0%
TCAATTGAGTTATGTTCACG+AGG + Chr4:1053729-1053748 None:intergenic 35.0%
TCAGAGTTAAACTCTTCATC+AGG + Chr4:1054296-1054315 None:intergenic 35.0%
TGATGAAGAGTTTAACTCTG+AGG - Chr4:1054295-1054314 MsG0480018161.01.T01:intron 35.0%
TGATTAGAGTATGGACAATG+AGG - Chr4:1050210-1050229 MsG0480018161.01.T01:three_prime_UTR 35.0%
TGGAATCACTCTGAGTTTAA+CGG - Chr4:1050603-1050622 MsG0480018161.01.T01:three_prime_UTR 35.0%
TGTGCATATGTAGATAGCTA+GGG + Chr4:1054487-1054506 None:intergenic 35.0%
TTACTTACGCTATCTCTAGT+AGG + Chr4:1054757-1054776 None:intergenic 35.0%
TTATCAACTGGTCACATTTC+TGG - Chr4:1051036-1051055 MsG0480018161.01.T01:intron 35.0%
! AAGACATGCTTTTGTCCAAA+AGG - Chr4:1052161-1052180 MsG0480018161.01.T01:intron 35.0%
! CAAACAACTACAAAGGCATA+TGG - Chr4:1054204-1054223 MsG0480018161.01.T01:intron 35.0%
! GAAGATTTGACTTTGGAAGA+TGG - Chr4:1050367-1050386 MsG0480018161.01.T01:three_prime_UTR 35.0%
! GTATATTGCTGCACAAGTTT+TGG - Chr4:1051231-1051250 MsG0480018161.01.T01:intron 35.0%
! GTTTTTCATCCATTCATGAG+TGG - Chr4:1051286-1051305 MsG0480018161.01.T01:intron 35.0%
! TCTGGGTATTTGGGTTTAAT+AGG - Chr4:1054670-1054689 MsG0480018161.01.T01:CDS 35.0%
! TGATAATAGTTGAAGGCATG+TGG - Chr4:1052331-1052350 MsG0480018161.01.T01:intron 35.0%
! TGTGCTTCTTTTACTCTCAA+AGG - Chr4:1051262-1051281 MsG0480018161.01.T01:intron 35.0%
!! AAATGTACCTTTTTGGCAAG+AGG + Chr4:1050436-1050455 None:intergenic 35.0%
!! AAGTAATGATTGGTGCTGAA+AGG + Chr4:1051718-1051737 None:intergenic 35.0%
!! AATGTACCTTTTTGGCAAGA+GGG + Chr4:1050435-1050454 None:intergenic 35.0%
!! AGTAATGATTGGTGCTGAAA+GGG + Chr4:1051717-1051736 None:intergenic 35.0%
!! ATCATCTTCTGAAACTTCCA+GGG + Chr4:1054337-1054356 None:intergenic 35.0%
AAGGCTAAGATGAGAGTCAA+TGG - Chr4:1052180-1052199 MsG0480018161.01.T01:intron 40.0%
ACGGTTCCTTCAGTTGAATA+TGG - Chr4:1051316-1051335 MsG0480018161.01.T01:intron 40.0%
AGAGAACTGGAAATGGTAGA+AGG - Chr4:1050308-1050327 MsG0480018161.01.T01:three_prime_UTR 40.0%
AGAGCAAGTGACTTTAGGTA+AGG + Chr4:1050395-1050414 None:intergenic 40.0%
ATGCTCAACATACTCATTGC+TGG - Chr4:1053543-1053562 MsG0480018161.01.T01:intron 40.0%
CTGCATTAAAACACTTCCCA+TGG - Chr4:1051094-1051113 MsG0480018161.01.T01:intron 40.0%
GAAACACTAATTGGATGTGC+TGG - Chr4:1050982-1051001 MsG0480018161.01.T01:intron 40.0%
GTGTGCATATGTAGATAGCT+AGG + Chr4:1054488-1054507 None:intergenic 40.0%
GTTAGGAAACAAGGCCTAAA+TGG + Chr4:1053918-1053937 None:intergenic 40.0%
TAACATGATGCAATGCAGGT+GGG - Chr4:1053486-1053505 MsG0480018161.01.T01:intron 40.0%
TAGAACCAATCATGTGCTTG+AGG - Chr4:1051537-1051556 MsG0480018161.01.T01:intron 40.0%
TAGTTGTTTGCAGCAATTGC+TGG + Chr4:1054194-1054213 None:intergenic 40.0%
TATCTCATAGCCCCTATTCT+TGG - Chr4:1054230-1054249 MsG0480018161.01.T01:intron 40.0%
TGCAGCAAATGAAATCGTGA+CGG + Chr4:1051079-1051098 None:intergenic 40.0%
TGCTCAACATACTCATTGCT+GGG - Chr4:1053544-1053563 MsG0480018161.01.T01:intron 40.0%
TTCTGGTGCTCATCTTAATC+CGG - Chr4:1051053-1051072 MsG0480018161.01.T01:intron 40.0%
TTGATTAGAGAGTGAGAGAG+AGG + Chr4:1050170-1050189 None:intergenic 40.0%
TTTCATCCATTCATGAGTGG+TGG - Chr4:1051289-1051308 MsG0480018161.01.T01:intron 40.0%
! AATAGTTGAAGGCATGTGGT+GGG - Chr4:1052335-1052354 MsG0480018161.01.T01:intron 40.0%
! ATTGAACAAAGCTAGCCTAG+TGG + Chr4:1051761-1051780 None:intergenic 40.0%
! CTCACACTTCTCGGATATTT+TGG - Chr4:1053971-1053990 MsG0480018161.01.T01:CDS 40.0%
! GACATTAGTTCTCTAGCATG+TGG - Chr4:1054645-1054664 MsG0480018161.01.T01:CDS 40.0%
! GATTTGAAGCCACCAAAAAG+AGG + Chr4:1050286-1050305 None:intergenic 40.0%
! TAATAGTTGAAGGCATGTGG+TGG - Chr4:1052334-1052353 MsG0480018161.01.T01:intron 40.0%
! TATACTCACAGCTCTAGTGT+CGG + Chr4:1051407-1051426 None:intergenic 40.0%
! TGGACAAAAGCATGTCTTCT+TGG + Chr4:1052159-1052178 None:intergenic 40.0%
!! CATCATCTTCTGAAACTTCC+AGG + Chr4:1054338-1054357 None:intergenic 40.0%
!! TCATCTTCTGAAACTTCCAG+GGG + Chr4:1054336-1054355 None:intergenic 40.0%
!! TCTTCTTGGTCGACTCTTTT+TGG + Chr4:1052145-1052164 None:intergenic 40.0%
!! TGACTCTCATCTTAGCCTTT+TGG + Chr4:1052179-1052198 None:intergenic 40.0%
!! TTTAGGCCTTGTTTCCTAAC+AGG - Chr4:1053918-1053937 MsG0480018161.01.T01:CDS 40.0%
!!! CTTTTGGTTCACAATTGCAG+TGG + Chr4:1050950-1050969 None:intergenic 40.0%
CACCCATCAACACACATCAA+CGG - Chr4:1052537-1052556 MsG0480018161.01.T01:intron 45.0%
CAGCTTCTGTCCTCACTAAA+TGG - Chr4:1052217-1052236 MsG0480018161.01.T01:intron 45.0%
CCAATCATGTGCTTGAGGAT+TGG - Chr4:1051542-1051561 MsG0480018161.01.T01:intron 45.0%
CCAATCCTCAAGCACATGAT+TGG + Chr4:1051545-1051564 None:intergenic 45.0%
CTATAAACTCTGCTCCAACC+TGG + Chr4:1050897-1050916 None:intergenic 45.0%
GAGTATGTTGAGCATGACAG+TGG + Chr4:1053538-1053557 None:intergenic 45.0%
GCTTGGCCATATTCAACTGA+AGG + Chr4:1051325-1051344 None:intergenic 45.0%
GGCAAAGAGCAAGTGACTTT+AGG + Chr4:1050400-1050419 None:intergenic 45.0%
GGCTTCAAATCTGAGAGAAC+TGG - Chr4:1050295-1050314 MsG0480018161.01.T01:three_prime_UTR 45.0%
GTAACATGATGCAATGCAGG+TGG - Chr4:1053485-1053504 MsG0480018161.01.T01:intron 45.0%
GTGGTAACATGATGCAATGC+AGG - Chr4:1053482-1053501 MsG0480018161.01.T01:intron 45.0%
TAGAAACACGGGTTCCACTT+TGG - Chr4:1052457-1052476 MsG0480018161.01.T01:intron 45.0%
TTCATTGAAGCTCCAGTTGC+AGG + Chr4:1054152-1054171 None:intergenic 45.0%
! ATGTGCTTGAGGATTGGTGT+AGG - Chr4:1051548-1051567 MsG0480018161.01.T01:intron 45.0%
! ATTCATGAGTGGTGGTGTCA+CGG - Chr4:1051297-1051316 MsG0480018161.01.T01:intron 45.0%
! CAGAGGGAGTATGTGTTTCT+AGG + Chr4:1052618-1052637 None:intergenic 45.0%
! CAGGTTGGAGCAGAGTTTAT+AGG - Chr4:1050895-1050914 MsG0480018161.01.T01:intron 45.0%
! CTTTTCCACTCCACACTTCT+CGG + Chr4:1054090-1054109 None:intergenic 45.0%
! TGACATTGCTTGGGTGTCAT+TGG + Chr4:1052583-1052602 None:intergenic 45.0%
! TGATGTGTGTTGATGGGTGT+GGG + Chr4:1052536-1052555 None:intergenic 45.0%
! TTGATGTGTGTTGATGGGTG+TGG + Chr4:1052537-1052556 None:intergenic 45.0%
!! ACCAAGAGCACCAAGAATAG+GGG + Chr4:1054243-1054262 None:intergenic 45.0%
!! CACCAAGAGCACCAAGAATA+GGG + Chr4:1054244-1054263 None:intergenic 45.0%
!! CATGTTTGTTGTCACTGCAG+TGG - Chr4:1051378-1051397 MsG0480018161.01.T01:intron 45.0%
!! CTATTCTTGGTGCTCTTGGT+GGG - Chr4:1054243-1054262 MsG0480018161.01.T01:intron 45.0%
!! TATTCTTGGTGCTCTTGGTG+GGG - Chr4:1054244-1054263 MsG0480018161.01.T01:intron 45.0%
!! TCGGAGGTTTCTGGTTTGTT+CGG + Chr4:1054071-1054090 None:intergenic 45.0%
!! AAAAAAAAAACAATTATTAA+AGG - Chr4:1051880-1051899 MsG0480018161.01.T01:intron 5.0%
!!! AAGTAAATTTTTTTTTTATA+GGG - Chr4:1053178-1053197 MsG0480018161.01.T01:intron 5.0%
!!! TAAGTAAATTTTTTTTTTAT+AGG - Chr4:1053177-1053196 MsG0480018161.01.T01:intron 5.0%
AATGCAGGTGGGAGAACTTG+CGG - Chr4:1053497-1053516 MsG0480018161.01.T01:intron 50.0%
ATATACTGCAGGCCTGCAAC+TGG - Chr4:1054137-1054156 MsG0480018161.01.T01:intron 50.0%
ATCAACACACATCAACGGCC+AGG - Chr4:1052542-1052561 MsG0480018161.01.T01:intron 50.0%
ATTGGATGTGCTGGAGCTAC+TGG - Chr4:1050991-1051010 MsG0480018161.01.T01:intron 50.0%
CATGTGGCCTCTGGGTATTT+GGG - Chr4:1054661-1054680 MsG0480018161.01.T01:CDS 50.0%
GATGTGTGTGTGATGTGTCG+TGG + Chr4:1052513-1052532 None:intergenic 50.0%
GCAAATGAAATCGTGACGGC+CGG + Chr4:1051075-1051094 None:intergenic 50.0%
GCTGGTCCTAGTGTTCTTAC+TGG + Chr4:1054176-1054195 None:intergenic 50.0%
GTGACACCACCACTCATGAA+TGG + Chr4:1051298-1051317 None:intergenic 50.0%
TCCTGTCCCTCTTGCCAAAA+AGG - Chr4:1050426-1050445 MsG0480018161.01.T01:three_prime_UTR 50.0%
TGGCCGTTGATGTGTGTTGA+TGG + Chr4:1052543-1052562 None:intergenic 50.0%
TGTGTGATGTGTCGTGGAGA+TGG + Chr4:1052507-1052526 None:intergenic 50.0%
TTCTCTAGCATGTGGCCTCT+GGG - Chr4:1054653-1054672 MsG0480018161.01.T01:CDS 50.0%
! ACTCCTGGTGCTCCTCTTTT+TGG - Chr4:1050271-1050290 MsG0480018161.01.T01:three_prime_UTR 50.0%
! GATGTGTGTTGATGGGTGTG+GGG + Chr4:1052535-1052554 None:intergenic 50.0%
! GGCCGTTGATGTGTGTTGAT+GGG + Chr4:1052542-1052561 None:intergenic 50.0%
! TGAAGGCATGTGGTGGGATT+TGG - Chr4:1052341-1052360 MsG0480018161.01.T01:intron 50.0%
! TTTTGGCAAGAGGGACAGGA+GGG + Chr4:1050426-1050445 None:intergenic 50.0%
!! ACCTTTTTGGCAAGAGGGAC+AGG + Chr4:1050430-1050449 None:intergenic 50.0%
!! CAGGGGTAGAAGGTACTGAT+GGG + Chr4:1050240-1050259 None:intergenic 50.0%
!! CCACCAAGAGCACCAAGAAT+AGG + Chr4:1054245-1054264 None:intergenic 50.0%
!! CCTATTCTTGGTGCTCTTGG+TGG - Chr4:1054242-1054261 MsG0480018161.01.T01:intron 50.0%
!! TTGGGTGTCATTGGTGCCAT+TGG + Chr4:1052574-1052593 None:intergenic 50.0%
!! TTTTTGGCAAGAGGGACAGG+AGG + Chr4:1050427-1050446 None:intergenic 50.0%
AACGGCCAGGATTGCACCAA+TGG - Chr4:1052555-1052574 MsG0480018161.01.T01:intron 55.0%
ATGCAGGTGGGAGAACTTGC+GGG - Chr4:1053498-1053517 MsG0480018161.01.T01:intron 55.0%
CCACACTTCTCGGAGGTTTC+TGG + Chr4:1054080-1054099 None:intergenic 55.0%
CCAGAAACCTCCGAGAAGTG+TGG - Chr4:1054077-1054096 MsG0480018161.01.T01:CDS 55.0%
GAAACTTCCAGGGGCAGAAG+AGG + Chr4:1054327-1054346 None:intergenic 55.0%
GCATGTGGCCTCTGGGTATT+TGG - Chr4:1054660-1054679 MsG0480018161.01.T01:CDS 55.0%
GTTAAAGCCTCTTCTGCCCC+TGG - Chr4:1054317-1054336 MsG0480018161.01.T01:intron 55.0%
GTTCTCTAGCATGTGGCCTC+TGG - Chr4:1054652-1054671 MsG0480018161.01.T01:CDS 55.0%
TTCCACTCCACACTTCTCGG+AGG + Chr4:1054087-1054106 None:intergenic 55.0%
TTTGGCAAGAGGGACAGGAG+GGG + Chr4:1050425-1050444 None:intergenic 55.0%
! AACCTCCGAGAAGTGTGGAG+TGG - Chr4:1054082-1054101 MsG0480018161.01.T01:CDS 55.0%
! ACTCACAGCTCTAGTGTCGG+TGG + Chr4:1051404-1051423 None:intergenic 55.0%
! CCTGGTGCTCCTCTTTTTGG+TGG - Chr4:1050274-1050293 MsG0480018161.01.T01:three_prime_UTR 55.0%
!! CCACCAAAAAGAGGAGCACC+AGG + Chr4:1050277-1050296 None:intergenic 55.0%
!! GCAGGGGTAGAAGGTACTGA+TGG + Chr4:1050241-1050260 None:intergenic 55.0%
!! GCCCCTATTCTTGGTGCTCT+TGG - Chr4:1054239-1054258 MsG0480018161.01.T01:intron 55.0%
!! TGGTGCCATTGGTGCAATCC+TGG + Chr4:1052563-1052582 None:intergenic 55.0%
AGAACTTGCGGGAATCGCGG+TGG - Chr4:1053509-1053528 MsG0480018161.01.T01:intron 60.0%
GAACTTGCGGGAATCGCGGT+GGG - Chr4:1053510-1053529 MsG0480018161.01.T01:intron 60.0%
GGGAGAACTTGCGGGAATCG+CGG - Chr4:1053506-1053525 MsG0480018161.01.T01:intron 60.0%
TTGGCAAGAGGGACAGGAGG+GGG + Chr4:1050424-1050443 None:intergenic 60.0%
!! AGAGGAGCACCAGGAGTACC+TGG + Chr4:1050268-1050287 None:intergenic 60.0%
!! AGGAGCACCAGGAGTACCTG+GGG + Chr4:1050266-1050285 None:intergenic 60.0%
!! AGGAGTACCTGGGGTAGCAG+GGG + Chr4:1050257-1050276 None:intergenic 60.0%
!! CAGGAGTACCTGGGGTAGCA+GGG + Chr4:1050258-1050277 None:intergenic 60.0%
!! GAGGAGCACCAGGAGTACCT+GGG + Chr4:1050267-1050286 None:intergenic 60.0%
CCTGCTACCCCAGGTACTCC+TGG - Chr4:1050256-1050275 MsG0480018161.01.T01:three_prime_UTR 65.0%
CCTGGGGTAGCAGGGGTAGA+AGG + Chr4:1050250-1050269 None:intergenic 65.0%
CCTTCTACCCCTGCTACCCC+AGG - Chr4:1050247-1050266 MsG0480018161.01.T01:three_prime_UTR 65.0%
!! CCAGGAGTACCTGGGGTAGC+AGG + Chr4:1050259-1050278 None:intergenic 65.0%
!! CTTGGTGCTCTTGGTGGGGC+AGG - Chr4:1054248-1054267 MsG0480018161.01.T01:intron 65.0%
GCAAGAGGGACAGGAGGGGG+AGG + Chr4:1050421-1050440 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
Chr4 gene 1050114 1054907 1050114 ID=MsG0480018161.01;Name=MsG0480018161.01
Chr4 mRNA 1050114 1054907 1050114 ID=MsG0480018161.01.T01;Parent=MsG0480018161.01;Name=MsG0480018161.01.T01;_AED=0.41;_eAED=0.41;_QI=106|1|1|1|1|1|5|552|305
Chr4 exon 1050114 1050873 1050114 ID=MsG0480018161.01.T01:exon:450;Parent=MsG0480018161.01.T01
Chr4 exon 1051456 1051517 1051456 ID=MsG0480018161.01.T01:exon:449;Parent=MsG0480018161.01.T01
Chr4 exon 1053604 1053798 1053604 ID=MsG0480018161.01.T01:exon:448;Parent=MsG0480018161.01.T01
Chr4 exon 1053899 1054123 1053899 ID=MsG0480018161.01.T01:exon:447;Parent=MsG0480018161.01.T01
Chr4 exon 1054574 1054907 1054574 ID=MsG0480018161.01.T01:exon:446;Parent=MsG0480018161.01.T01
Chr4 five_prime_UTR 1054802 1054907 1054802 ID=MsG0480018161.01.T01:five_prime_utr;Parent=MsG0480018161.01.T01
Chr4 CDS 1054574 1054801 1054574 ID=MsG0480018161.01.T01:cds;Parent=MsG0480018161.01.T01
Chr4 CDS 1053899 1054123 1053899 ID=MsG0480018161.01.T01:cds;Parent=MsG0480018161.01.T01
Chr4 CDS 1053604 1053798 1053604 ID=MsG0480018161.01.T01:cds;Parent=MsG0480018161.01.T01
Chr4 CDS 1051456 1051517 1051456 ID=MsG0480018161.01.T01:cds;Parent=MsG0480018161.01.T01
Chr4 CDS 1050666 1050873 1050666 ID=MsG0480018161.01.T01:cds;Parent=MsG0480018161.01.T01
Chr4 three_prime_UTR 1050114 1050665 1050114 ID=MsG0480018161.01.T01:three_prime_utr;Parent=MsG0480018161.01.T01
Gene Sequence

>MsG0480018161.01.T01

ATGGACAATGAGGAAATCCCATCAGTACCTTCTACCCCTGCTACCCCAGGTACTCCTGGTGCTCCTCTTTTTGGTGGCTTCAAATCTGAGAGAACTGGAAATGGTAGAAGGAACTCACTCCTCAAGAATTTAAAATGTTTTAGTGTTGAAGATTTGACTTTGGAAGATGGAGCCTTACCTAAAGTCACTTGCTCTTTGCCTCCCCCTCCTGTCCCTCTTGCCAAAAAGGTTGGAGCAGAGTTTATAGGCACATACATTCTAATGTTTGCTGGAATAGCCACTGCAATTGTGAACCAAAAGATACATAACTCAGAAACACTAATTGGATGTGCTGGAGCTACTGGACTTGCTGTTATGATCATAATTTTATCAACTGGTCACATTTCTGGTGCTCATCTTAATCCGGCCGTCACGATTTCATTTGCTGCATTAAAACACTTCCCATGGAAAAATGTACCTTTGTATATTGCTGCACAAGTTTTGGCATCAATATGTGCTTCTTTTACTCTCAAAGGAGTTTTTCATCCATTCATGAGTGGTGGTGTCACGGTTCCTTCAGTTGAATATGGCCAAGCTTTTGCTTTAGAGTTTATTATCAGTTTTAATCTCATGTTTGTTGTCACTGCAGTGGCCACCGACACTAGAGCTGTGGGAGAACTTGCGGGAATCGCGGTGGGAGCCACTGTCATGCTCAACATACTCATTGCTGGGCCTGCAACTGGAGCTTCAATGAATCCAGTAAGAACACTAGGACCAGCAATTGCTGCAAACAACTACAAAGGCATATGGCTATATCTCATAGCCCCTATTCTTGGTGCTCTTGGTGGGGCAGGAGCTTACACTGCTGTCAAGCTTCCTGATGAAGAGTTTAACTCTGAGGTTAAAGCCTCTTCTGCCCCTGGAAGTTTCAGAAGATGA
Protein sequence

>MsG0480018161.01.T01

MDNEEIPSVPSTPATPGTPGAPLFGGFKSERTGNGRRNSLLKNLKCFSVEDLTLEDGALPKVTCSLPPPPVPLAKKVGAEFIGTYILMFAGIATAIVNQKIHNSETLIGCAGATGLAVMIIILSTGHISGAHLNPAVTISFAALKHFPWKNVPLYIAAQVLASICASFTLKGVFHPFMSGGVTVPSVEYGQAFALEFIISFNLMFVVTAVATDTRAVGELAGIAVGATVMLNILIAGPATGASMNPVRTLGPAIAANNYKGIWLYLIAPILGALGGAGAYTAVKLPDEEFNSEVKASSAPGSFRR*