Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480018345.01.T01 | XP_003604378.1 | 99.052 | 211 | 2 | 0 | 1 | 211 | 1 | 211 | 1.12E-153 | 434 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480018345.01.T01 | Q9LVZ8 | 56.459 | 209 | 87 | 2 | 3 | 211 | 16 | 220 | 1.21E-82 | 248 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480018345.01.T01 | B7FGI9 | 99.052 | 211 | 2 | 0 | 1 | 211 | 1 | 211 | 5.33e-154 | 434 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080048940.01 | MsG0480018345.01 | 0.812749 | 3.625595e-51 | 2.324152e-48 |
| MsG0180000017.01 | MsG0480018345.01 | 0.823701 | 1.201802e-53 | 1.042707e-50 |
| MsG0180000151.01 | MsG0480018345.01 | 0.826678 | 2.378386e-54 | 2.245789e-51 |
| MsG0180000489.01 | MsG0480018345.01 | 0.815048 | 1.128692e-51 | 7.698967e-49 |
| MsG0180000491.01 | MsG0480018345.01 | 0.807250 | 5.539089e-50 | 3.070223e-47 |
| MsG0180000843.01 | MsG0480018345.01 | 0.809181 | 2.148669e-50 | 1.252934e-47 |
| MsG0180003352.01 | MsG0480018345.01 | 0.821746 | 3.427580e-53 | 2.812647e-50 |
| MsG0180005339.01 | MsG0480018345.01 | 0.804205 | 2.415770e-49 | 1.238097e-46 |
| MsG0180005803.01 | MsG0480018345.01 | 0.825364 | 4.879827e-54 | 4.438398e-51 |
| MsG0280006319.01 | MsG0480018345.01 | 0.827085 | 1.900726e-54 | 1.816202e-51 |
| MsG0280011073.01 | MsG0480018345.01 | 0.820303 | 7.366505e-53 | 5.806894e-50 |
| MsG0280011110.01 | MsG0480018345.01 | -0.802751 | 4.835160e-49 | 2.387540e-46 |
| MsG0380011662.01 | MsG0480018345.01 | 0.803083 | 4.128960e-49 | 2.055956e-46 |
| MsG0380013177.01 | MsG0480018345.01 | 0.806405 | 8.357273e-50 | 4.532226e-47 |
| MsG0380014750.01 | MsG0480018345.01 | 0.896440 | 3.681209e-76 | 3.982475e-72 |
| MsG0380016936.01 | MsG0480018345.01 | 0.803243 | 3.825999e-49 | 1.913015e-46 |
| MsG0380017037.01 | MsG0480018345.01 | 0.809808 | 1.575833e-50 | 9.343458e-48 |
| MsG0480018345.01 | MsG0480021207.01 | 0.809536 | 1.802365e-50 | 1.061013e-47 |
| MsG0480018345.01 | MsG0480021737.01 | 0.807248 | 5.545748e-50 | 3.073743e-47 |
| MsG0480018345.01 | MsG0480021999.01 | 0.832595 | 8.641941e-56 | 9.704520e-53 |
| MsG0480018345.01 | MsG0480022155.01 | 0.855972 | 4.404819e-62 | 1.035148e-58 |
| MsG0480018345.01 | MsG0480022162.01 | 0.807745 | 4.349281e-50 | 2.441999e-47 |
| MsG0480018345.01 | MsG0480022239.01 | 0.817942 | 2.538757e-52 | 1.874509e-49 |
| MsG0480018345.01 | MsG0480022240.01 | 0.819540 | 1.101033e-52 | 8.497055e-50 |
| MsG0480018345.01 | MsG0480022535.01 | 0.806284 | 8.865024e-50 | 4.792819e-47 |
| MsG0480018345.01 | MsG0480022617.01 | 0.808066 | 3.717466e-50 | 2.104809e-47 |
| MsG0480018345.01 | MsG0480022664.01 | 0.815318 | 9.829148e-52 | 6.754390e-49 |
| MsG0480018345.01 | MsG0480022805.01 | 0.804863 | 1.761539e-49 | 9.183315e-47 |
| MsG0480018345.01 | MsG0480023641.01 | 0.843496 | 1.351786e-58 | 2.118835e-55 |
| MsG0480018345.01 | MsG0480023740.01 | 0.801446 | 8.969038e-49 | 4.284180e-46 |
| MsG0480018345.01 | MsG0580024471.01 | 0.854113 | 1.527611e-61 | 3.375934e-58 |
| MsG0480018345.01 | MsG0580024491.01 | -0.817971 | 2.500666e-52 | 1.847817e-49 |
| MsG0480018345.01 | MsG0580024597.01 | 0.851202 | 1.034481e-60 | 2.077947e-57 |
| MsG0480018345.01 | MsG0580024598.01 | 0.849648 | 2.825910e-60 | 5.393542e-57 |
| MsG0480018345.01 | MsG0580024601.01 | 0.849346 | 3.429505e-60 | 6.482848e-57 |
| MsG0480018345.01 | MsG0580024763.01 | 0.826232 | 3.037218e-54 | 2.831742e-51 |
| MsG0480018345.01 | MsG0580024764.01 | 0.801862 | 7.370715e-49 | 3.558057e-46 |
| MsG0480018345.01 | MsG0580025301.01 | 0.803196 | 3.912172e-49 | 1.953808e-46 |
| MsG0480018345.01 | MsG0580028925.01 | 0.801522 | 8.652284e-49 | 4.140879e-46 |
| MsG0480018345.01 | MsG0580029433.01 | 0.834938 | 2.243173e-56 | 2.702291e-53 |
| MsG0480018345.01 | MsG0580029912.01 | 0.816062 | 6.712531e-52 | 4.707896e-49 |
| MsG0480018345.01 | MsG0580029914.01 | 0.805251 | 1.460866e-49 | 7.691410e-47 |
| MsG0480018345.01 | MsG0580030063.01 | 0.810640 | 1.042320e-50 | 6.316993e-48 |
| MsG0480018345.01 | MsG0680030680.01 | 0.804411 | 2.188624e-49 | 1.127637e-46 |
| MsG0480018345.01 | MsG0680031997.01 | 0.800438 | 1.441218e-48 | 6.710828e-46 |
| MsG0480018345.01 | MsG0680032413.01 | 0.814081 | 1.847291e-51 | 1.227561e-48 |
| MsG0480018345.01 | MsG0680035664.01 | 0.827244 | 1.741521e-54 | 1.671821e-51 |
| MsG0480018345.01 | MsG0780039805.01 | 0.824310 | 8.648859e-54 | 7.632140e-51 |
| MsG0480018345.01 | MsG0780039806.01 | 0.845767 | 3.307450e-59 | 5.571430e-56 |
| MsG0480018345.01 | MsG0780039807.01 | 0.833104 | 6.459450e-56 | 7.365415e-53 |
| MsG0480018345.01 | MsG0780039964.01 | 0.824660 | 7.157895e-54 | 6.381589e-51 |
| MsG0480018345.01 | MsG0780040700.01 | 0.809286 | 2.039810e-50 | 1.192810e-47 |
| MsG0480018345.01 | MsG0780040701.01 | 0.804294 | 2.314271e-49 | 1.188863e-46 |
| MsG0480018345.01 | MsG0780040794.01 | 0.812845 | 3.453754e-51 | 2.219467e-48 |
| MsG0480018345.01 | MsG0880042086.01 | 0.805968 | 1.033084e-49 | 5.540673e-47 |
| MsG0480018345.01 | MsG0880042256.01 | 0.814497 | 1.494991e-51 | 1.004775e-48 |
| MsG0480018345.01 | MsG0880042416.01 | 0.809290 | 2.035379e-50 | 1.190361e-47 |
| MsG0480018345.01 | MsG0880042876.01 | 0.809532 | 1.806373e-50 | 1.063238e-47 |
| MsG0480018345.01 | MsG0880043107.01 | 0.833537 | 5.036783e-56 | 5.817882e-53 |
| MsG0480018345.01 | MsG0880044105.01 | 0.870889 | 1.037302e-66 | 4.102520e-63 |
| MsG0480018345.01 | MsG0880044834.01 | 0.800214 | 1.600877e-48 | 7.411864e-46 |
| MsG0480018345.01 | MsG0880045190.01 | 0.812060 | 5.125595e-51 | 3.225700e-48 |
| MsG0480018345.01 | MsG0880046124.01 | 0.810610 | 1.058119e-50 | 6.407508e-48 |
| MsG0480018345.01 | MsG0880046324.01 | 0.818363 | 2.038125e-52 | 1.522561e-49 |
| MsG0280009435.01 | MsG0480018345.01 | 0.806815 | 6.847300e-50 | 3.752732e-47 |
| MsG0280010131.01 | MsG0480018345.01 | 0.826966 | 2.029200e-54 | 1.932274e-51 |
| MsG0280010254.01 | MsG0480018345.01 | 0.812334 | 4.468031e-51 | 2.833084e-48 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480018345.01.T01 | MTR_4g010180 | 99.052 | 211 | 2 | 0 | 1 | 211 | 1 | 211 | 1.35e-157 | 434 |
| MsG0480018345.01.T01 | MTR_2g103840 | 68.720 | 211 | 65 | 1 | 2 | 211 | 13 | 223 | 4.99e-105 | 302 |
| MsG0480018345.01.T01 | MTR_2g103850 | 65.714 | 210 | 71 | 1 | 3 | 211 | 15 | 224 | 9.61e-104 | 298 |
| MsG0480018345.01.T01 | MTR_8g099000 | 35.938 | 192 | 101 | 4 | 18 | 190 | 43 | 231 | 2.68e-29 | 109 |
| MsG0480018345.01.T01 | MTR_7g072140 | 29.947 | 187 | 125 | 5 | 11 | 194 | 27 | 210 | 4.09e-26 | 100 |
| MsG0480018345.01.T01 | MTR_8g023060 | 32.418 | 182 | 116 | 4 | 16 | 193 | 20 | 198 | 8.58e-26 | 99.4 |
| MsG0480018345.01.T01 | MTR_7g072170 | 29.032 | 186 | 126 | 5 | 11 | 193 | 27 | 209 | 1.02e-23 | 94.7 |
| MsG0480018345.01.T01 | MTR_7g072270 | 27.895 | 190 | 130 | 6 | 7 | 193 | 22 | 207 | 3.30e-23 | 92.8 |
| MsG0480018345.01.T01 | MTR_7g072120 | 28.804 | 184 | 125 | 5 | 11 | 191 | 27 | 207 | 5.04e-23 | 92.4 |
| MsG0480018345.01.T01 | MTR_0650s0010 | 29.665 | 209 | 130 | 7 | 1 | 196 | 1 | 205 | 8.73e-22 | 89.0 |
| MsG0480018345.01.T01 | MTR_4g029430 | 26.667 | 195 | 129 | 7 | 2 | 191 | 10 | 195 | 1.41e-18 | 80.5 |
| MsG0480018345.01.T01 | MTR_7g072250 | 25.000 | 196 | 128 | 6 | 7 | 190 | 47 | 235 | 4.62e-18 | 80.1 |
| MsG0480018345.01.T01 | MTR_7g071710 | 26.050 | 119 | 82 | 4 | 80 | 194 | 1 | 117 | 3.92e-13 | 63.9 |
| MsG0480018345.01.T01 | MTR_7g072270 | 25.850 | 147 | 103 | 5 | 7 | 150 | 22 | 165 | 5.06e-12 | 62.0 |
| MsG0480018345.01.T01 | MTR_8g097380 | 27.778 | 180 | 116 | 7 | 21 | 193 | 32 | 204 | 7.84e-12 | 62.4 |
| MsG0480018345.01.T01 | MTR_8g097400 | 28.723 | 188 | 115 | 9 | 15 | 193 | 27 | 204 | 9.03e-12 | 62.0 |
| MsG0480018345.01.T01 | MTR_0415s0060 | 28.723 | 188 | 115 | 9 | 15 | 193 | 22 | 199 | 1.04e-11 | 62.0 |
| MsG0480018345.01.T01 | MTR_1g014180 | 23.118 | 186 | 134 | 6 | 7 | 188 | 5 | 185 | 2.70e-11 | 60.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480018345.01.T01 | AT3G15810 | 56.459 | 209 | 87 | 2 | 3 | 211 | 16 | 220 | 1.23e-83 | 248 |
| MsG0480018345.01.T01 | AT1G80120 | 62.201 | 209 | 72 | 5 | 6 | 211 | 5 | 209 | 1.17e-77 | 232 |
| MsG0480018345.01.T01 | AT2G38640 | 39.888 | 178 | 100 | 4 | 15 | 190 | 20 | 192 | 1.69e-30 | 111 |
| MsG0480018345.01.T01 | AT5G41590 | 37.297 | 185 | 102 | 7 | 18 | 190 | 37 | 219 | 2.50e-23 | 93.6 |
| MsG0480018345.01.T01 | AT5G01750 | 27.604 | 192 | 133 | 5 | 6 | 194 | 26 | 214 | 4.10e-21 | 87.4 |
| MsG0480018345.01.T01 | AT5G20640 | 30.049 | 203 | 125 | 6 | 7 | 194 | 12 | 212 | 1.00e-20 | 86.7 |
| MsG0480018345.01.T01 | AT2G05910 | 27.551 | 196 | 127 | 5 | 5 | 194 | 2 | 188 | 3.18e-20 | 84.7 |
| MsG0480018345.01.T01 | AT3G11740 | 26.816 | 179 | 124 | 4 | 20 | 194 | 16 | 191 | 7.94e-20 | 83.6 |
| MsG0480018345.01.T01 | AT1G53875 | 28.022 | 182 | 115 | 5 | 12 | 186 | 48 | 220 | 3.26e-16 | 74.7 |
| MsG0480018345.01.T01 | AT1G33840 | 24.084 | 191 | 135 | 3 | 6 | 191 | 26 | 211 | 3.34e-16 | 74.7 |
| MsG0480018345.01.T01 | AT1G63410 | 27.083 | 192 | 127 | 5 | 5 | 192 | 7 | 189 | 1.96e-13 | 66.6 |
| MsG0480018345.01.T01 | AT1G63410 | 26.562 | 192 | 128 | 4 | 5 | 192 | 7 | 189 | 3.62e-13 | 66.2 |
| MsG0480018345.01.T01 | AT2G14560 | 22.115 | 208 | 150 | 5 | 1 | 202 | 1 | 202 | 1.41e-11 | 61.6 |
| MsG0480018345.01.T01 | AT2G14560 | 22.115 | 208 | 150 | 5 | 1 | 202 | 61 | 262 | 3.49e-11 | 61.2 |
| MsG0480018345.01.T01 | AT5G01750 | 23.649 | 148 | 108 | 4 | 6 | 150 | 26 | 171 | 9.02e-11 | 58.9 |
Find 64 sgRNAs with CRISPR-Local
Find 118 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAATAGTTCTTCTCTATTTA+AGG | 0.079515 | 4:+3607504 | MsG0480018345.01.T01:five_prime_UTR |
| GGTGAGAATTTCTTTGATAA+TGG | 0.240720 | 4:+3609572 | MsG0480018345.01.T01:CDS |
| TATGAATGACATTAATAAAA+TGG | 0.243562 | 4:+3609701 | MsG0480018345.01.T01:three_prime_UTR |
| GACATTAATAAAATGGTTAA+TGG | 0.266723 | 4:+3609708 | MsG0480018345.01.T01:three_prime_UTR |
| CTTTGCTATGGGATTGGTTT+TGG | 0.267059 | 4:+3609532 | MsG0480018345.01.T01:CDS |
| ATGCTTCAAATAAGCTATAT+TGG | 0.326291 | 4:+3609768 | MsG0480018345.01.T01:three_prime_UTR |
| GTGAGAATTTCTTTGATAAT+GGG | 0.336997 | 4:+3609573 | MsG0480018345.01.T01:CDS |
| ATTCATCAATCTTCTGTAGT+AGG | 0.340424 | 4:-3609617 | None:intergenic |
| CTCAGCCACTACTTTCTTTG+TGG | 0.350694 | 4:-3609423 | None:intergenic |
| TAGCTTATTTGAAGCATGTA+TGG | 0.372769 | 4:-3609762 | None:intergenic |
| GGGTGGAGAGATATTTCATT+AGG | 0.386583 | 4:-3607365 | None:intergenic |
| GTTTGTTGTGTATGATTGTA+AGG | 0.389745 | 4:+3607721 | MsG0480018345.01.T01:CDS |
| AAAATCTTACAGCATCTTTG+TGG | 0.417016 | 4:-3609395 | None:intergenic |
| TCTTCCTTATCACGTGTGTT+TGG | 0.423689 | 4:-3607776 | None:intergenic |
| TTGGTACTTGATCAAATCAA+TGG | 0.444060 | 4:+3609551 | MsG0480018345.01.T01:CDS |
| TCACAGTTCTGAAAACATCT+AGG | 0.452269 | 4:+3607681 | MsG0480018345.01.T01:CDS |
| TGTGTCCTTTGCTATGGGAT+TGG | 0.455402 | 4:+3609526 | MsG0480018345.01.T01:CDS |
| GCAAAGGACACATCAAAATC+AGG | 0.458386 | 4:-3609515 | None:intergenic |
| AAATCTTACAGCATCTTTGT+GGG | 0.461184 | 4:-3609394 | None:intergenic |
| AAAAGAATATTTATTGAGCT+GGG | 0.463914 | 4:-3607404 | None:intergenic |
| TCTTCTCACCTTGCGTAGAA+AGG | 0.467170 | 4:+3607829 | MsG0480018345.01.T01:CDS |
| TTTGATGTGTCCTTTGCTAT+GGG | 0.468789 | 4:+3609521 | MsG0480018345.01.T01:CDS |
| TCAAATAAGCTATATTGGTA+TGG | 0.488317 | 4:+3609773 | MsG0480018345.01.T01:three_prime_UTR |
| TGGACCAAACACACGTGATA+AGG | 0.488839 | 4:+3607772 | MsG0480018345.01.T01:CDS |
| TCCCATCGTTGATGAAGACT+TGG | 0.494963 | 4:-3609230 | None:intergenic |
| TGTGAAGATGAATAAGTTGA+AGG | 0.503415 | 4:-3607575 | None:intergenic |
| ATCGTGTACCTCCACTGTTA+TGG | 0.509066 | 4:-3609336 | None:intergenic |
| TTGGTCCATACGAGTCAAAC+CGG | 0.510635 | 4:-3607757 | None:intergenic |
| CTGGGAAAATATTGTAAAGG+AGG | 0.523625 | 4:-3607386 | None:intergenic |
| GAGCTGGGAAAATATTGTAA+AGG | 0.531777 | 4:-3607389 | None:intergenic |
| TTCATCAATCTTCTGTAGTA+GGG | 0.533840 | 4:-3609616 | None:intergenic |
| GGTGTGGAGTACCTCATTGA+AGG | 0.534346 | 4:+3609365 | MsG0480018345.01.T01:CDS |
| TCAATGAGGTACTCCACACC+TGG | 0.537802 | 4:-3609362 | None:intergenic |
| GGCTGAGATTCGTCGTAAAG+TGG | 0.538189 | 4:+3609439 | MsG0480018345.01.T01:CDS |
| AGGGTGCACCGAGGTTTCAA+TGG | 0.544254 | 4:-3609597 | None:intergenic |
| GAAAATATTGTAAAGGAGGG+TGG | 0.551890 | 4:-3607382 | None:intergenic |
| CAACGATGGGAAGGATTCAA+AGG | 0.560825 | 4:+3609242 | MsG0480018345.01.T01:CDS |
| ACCAAGCATAACACTAGTGG+TGG | 0.565653 | 4:-3609465 | None:intergenic |
| TAATGCCACAAAGAAAGTAG+TGG | 0.567237 | 4:+3609418 | MsG0480018345.01.T01:CDS |
| TGTATGGCTTGAAATTTGAA+AGG | 0.574221 | 4:-3609746 | None:intergenic |
| AACCAAGTCTTCATCAACGA+TGG | 0.577300 | 4:+3609228 | MsG0480018345.01.T01:CDS |
| TTTGTTGTGTATGATTGTAA+GGG | 0.578513 | 4:+3607722 | MsG0480018345.01.T01:CDS |
| TTCAAAGGAGAGAGAAAAGA+CGG | 0.580588 | 4:+3609257 | MsG0480018345.01.T01:CDS |
| ACCAAGTCTTCATCAACGAT+GGG | 0.589490 | 4:+3609229 | MsG0480018345.01.T01:CDS |
| CCCACCACTAGTGTTATGCT+TGG | 0.591048 | 4:+3609464 | MsG0480018345.01.T01:CDS |
| AGTACATACCTTTCTACGCA+AGG | 0.600429 | 4:-3607837 | None:intergenic |
| GTGTGGAGTACCTCATTGAA+GGG | 0.603117 | 4:+3609366 | MsG0480018345.01.T01:CDS |
| CTTGTTCTTATGAACACACA+TGG | 0.614551 | 4:+3607800 | MsG0480018345.01.T01:CDS |
| TGGGAAAATATTGTAAAGGA+GGG | 0.616746 | 4:-3607385 | None:intergenic |
| TAATGGGACCATTGAAACCT+CGG | 0.618557 | 4:+3609589 | MsG0480018345.01.T01:CDS |
| GTGGGAAACACCCTTCAATG+AGG | 0.622701 | 4:-3609376 | None:intergenic |
| TTTACCAAGCATAACACTAG+TGG | 0.625648 | 4:-3609468 | None:intergenic |
| AGTCTTCATCAACGATGGGA+AGG | 0.627932 | 4:+3609233 | MsG0480018345.01.T01:CDS |
| TAATGTCATTCATACAACAA+AGG | 0.629575 | 4:-3609692 | None:intergenic |
| CAAAACCAATCCCATAGCAA+AGG | 0.642295 | 4:-3609531 | None:intergenic |
| AAAGATCATCAATAATCGCA+CGG | 0.646246 | 4:+3609303 | MsG0480018345.01.T01:CDS |
| CAAGCATAACACTAGTGGTG+GGG | 0.647075 | 4:-3609463 | None:intergenic |
| CCAAGCATAACACTAGTGGT+GGG | 0.663464 | 4:-3609464 | None:intergenic |
| GGTACACGATAACCCAGGTG+TGG | 0.667191 | 4:+3609349 | MsG0480018345.01.T01:CDS |
| AAGAATGACCATAACAGTGG+AGG | 0.694861 | 4:+3609328 | MsG0480018345.01.T01:CDS |
| GTCAAGAATGACCATAACAG+TGG | 0.699668 | 4:+3609325 | MsG0480018345.01.T01:CDS |
| CAATGAGGTACTCCACACCT+GGG | 0.718093 | 4:-3609361 | None:intergenic |
| TTCTGTAGTAGGGTGCACCG+AGG | 0.725146 | 4:-3609606 | None:intergenic |
| GTGGAGGTACACGATAACCC+AGG | 0.734091 | 4:+3609344 | MsG0480018345.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTAAATATTTATTTAAGTG+TGG | - | Chr4:3608810-3608829 | None:intergenic | 10.0% |
| !!! | AAGATATATTTTGTTATTAT+TGG | + | Chr4:3608275-3608294 | MsG0480018345.01.T01:intron | 10.0% |
| !!! | AGATATATTTTGTTATTATT+GGG | + | Chr4:3608276-3608295 | MsG0480018345.01.T01:intron | 10.0% |
| !! | TATGAATGACATTAATAAAA+TGG | + | Chr4:3609701-3609720 | MsG0480018345.01.T01:three_prime_UTR | 15.0% |
| !!! | AAGATTTTTTTTATGTGAAT+CGG | - | Chr4:3608653-3608672 | None:intergenic | 15.0% |
| !!! | ATGTATTTTTAGTTTACAAT+CGG | + | Chr4:3608363-3608382 | MsG0480018345.01.T01:intron | 15.0% |
| !! | AAAAAGAATATTTATTGAGC+TGG | - | Chr4:3607408-3607427 | None:intergenic | 20.0% |
| !! | AAAAGAATATTTATTGAGCT+GGG | - | Chr4:3607407-3607426 | None:intergenic | 20.0% |
| !! | GACATTAATAAAATGGTTAA+TGG | + | Chr4:3609708-3609727 | MsG0480018345.01.T01:three_prime_UTR | 20.0% |
| !! | TTGAATATACAACTGAATTT+GGG | + | Chr4:3608427-3608446 | MsG0480018345.01.T01:intron | 20.0% |
| !!! | TTTTGCTTAAGAATGATTTT+AGG | - | Chr4:3607335-3607354 | None:intergenic | 20.0% |
| !!! | TTTTTATTTTGTGCTGTAAA+GGG | - | Chr4:3607473-3607492 | None:intergenic | 20.0% |
| ! | ATCTTGAAAAAGAGTGATTA+AGG | - | Chr4:3608783-3608802 | None:intergenic | 25.0% |
| ! | ATGCTTCAAATAAGCTATAT+TGG | + | Chr4:3609768-3609787 | MsG0480018345.01.T01:three_prime_UTR | 25.0% |
| ! | CAATAGTTCTTCTCTATTTA+AGG | + | Chr4:3607504-3607523 | MsG0480018345.01.T01:five_prime_UTR | 25.0% |
| ! | GTTGAATATACAACTGAATT+TGG | + | Chr4:3608426-3608445 | MsG0480018345.01.T01:intron | 25.0% |
| ! | TAATGTCATTCATACAACAA+AGG | - | Chr4:3609695-3609714 | None:intergenic | 25.0% |
| ! | TCAAATAAGCTATATTGGTA+TGG | + | Chr4:3609773-3609792 | MsG0480018345.01.T01:three_prime_UTR | 25.0% |
| !! | GTGAGAATTTCTTTGATAAT+GGG | + | Chr4:3609573-3609592 | MsG0480018345.01.T01:CDS | 25.0% |
| !! | TTCTTTTTGTGTTCTGTAAT+TGG | + | Chr4:3607878-3607897 | MsG0480018345.01.T01:intron | 25.0% |
| !! | TTTGTTGTGTATGATTGTAA+GGG | + | Chr4:3607722-3607741 | MsG0480018345.01.T01:CDS | 25.0% |
| !!! | CTTTTTATTTTGTGCTGTAA+AGG | - | Chr4:3607474-3607493 | None:intergenic | 25.0% |
| AAAATCTTACAGCATCTTTG+TGG | - | Chr4:3609398-3609417 | None:intergenic | 30.0% | |
| AAAGATCATCAATAATCGCA+CGG | + | Chr4:3609303-3609322 | MsG0480018345.01.T01:CDS | 30.0% | |
| AAATCTTACAGCATCTTTGT+GGG | - | Chr4:3609397-3609416 | None:intergenic | 30.0% | |
| ACCTAGATCTTTGGTTAAAT+CGG | + | Chr4:3608252-3608271 | MsG0480018345.01.T01:intron | 30.0% | |
| AGATTACTATCTCAAGTGAT+AGG | - | Chr4:3608607-3608626 | None:intergenic | 30.0% | |
| ATATACAACTGAATTTGGGA+TGG | + | Chr4:3608431-3608450 | MsG0480018345.01.T01:intron | 30.0% | |
| ATCTCTGTCTTAACTAACTT+TGG | + | Chr4:3607967-3607986 | MsG0480018345.01.T01:intron | 30.0% | |
| ATTAGTAACGTTGTACGAAA+AGG | - | Chr4:3608141-3608160 | None:intergenic | 30.0% | |
| ATTCATCAATCTTCTGTAGT+AGG | - | Chr4:3609620-3609639 | None:intergenic | 30.0% | |
| CATATTCAAACCTAGATCTT+TGG | + | Chr4:3608243-3608262 | MsG0480018345.01.T01:intron | 30.0% | |
| GAAAAAGAGTGATTAAGGTA+GGG | - | Chr4:3608778-3608797 | None:intergenic | 30.0% | |
| GGTGAGAATTTCTTTGATAA+TGG | + | Chr4:3609572-3609591 | MsG0480018345.01.T01:CDS | 30.0% | |
| GTCCTAAGATAGTGAATATA+CGG | - | Chr4:3608705-3608724 | None:intergenic | 30.0% | |
| TATTCCTTTGACTGAAATCA+AGG | - | Chr4:3609010-3609029 | None:intergenic | 30.0% | |
| TCCTAACATAGTGAAATCTT+GGG | - | Chr4:3608682-3608701 | None:intergenic | 30.0% | |
| TGAAAAAGAGTGATTAAGGT+AGG | - | Chr4:3608779-3608798 | None:intergenic | 30.0% | |
| TGGGAAAATATTGTAAAGGA+GGG | - | Chr4:3607388-3607407 | None:intergenic | 30.0% | |
| TGTATGGCTTGAAATTTGAA+AGG | - | Chr4:3609749-3609768 | None:intergenic | 30.0% | |
| TTCATCAATCTTCTGTAGTA+GGG | - | Chr4:3609619-3609638 | None:intergenic | 30.0% | |
| TTGGTACTTGATCAAATCAA+TGG | + | Chr4:3609551-3609570 | MsG0480018345.01.T01:CDS | 30.0% | |
| ! | GATCTTTTCACATTGAAGAT+TGG | - | Chr4:3609290-3609309 | None:intergenic | 30.0% |
| ! | TAGCTTATTTGAAGCATGTA+TGG | - | Chr4:3609765-3609784 | None:intergenic | 30.0% |
| ! | TGTGAAGATGAATAAGTTGA+AGG | - | Chr4:3607578-3607597 | None:intergenic | 30.0% |
| !! | AAAACATCTAGGTTTTTCAG+TGG | + | Chr4:3607692-3607711 | MsG0480018345.01.T01:CDS | 30.0% |
| !! | AAACGTGTTTTTGTGCTAAA+TGG | - | Chr4:3607431-3607450 | None:intergenic | 30.0% |
| !! | GGTATGTTTGATTTGCAATT+AGG | - | Chr4:3608757-3608776 | None:intergenic | 30.0% |
| !! | GTTTGTTGTGTATGATTGTA+AGG | + | Chr4:3607721-3607740 | MsG0480018345.01.T01:CDS | 30.0% |
| !!! | TCACACATTTTAGTTCTACA+CGG | - | Chr4:3608175-3608194 | None:intergenic | 30.0% |
| AAACTGTTCACGCAACTAAA+CGG | - | Chr4:3608727-3608746 | None:intergenic | 35.0% | |
| CCTAACATAGTGAAATCTTG+GGG | - | Chr4:3608681-3608700 | None:intergenic | 35.0% | |
| CTGGGAAAATATTGTAAAGG+AGG | - | Chr4:3607389-3607408 | None:intergenic | 35.0% | |
| CTTGTTCTTATGAACACACA+TGG | + | Chr4:3607800-3607819 | MsG0480018345.01.T01:CDS | 35.0% | |
| GAAAATATTGTAAAGGAGGG+TGG | - | Chr4:3607385-3607404 | None:intergenic | 35.0% | |
| GACCGTATATTCACTATCTT+AGG | + | Chr4:3608700-3608719 | MsG0480018345.01.T01:intron | 35.0% | |
| GAGCTGGGAAAATATTGTAA+AGG | - | Chr4:3607392-3607411 | None:intergenic | 35.0% | |
| GTACGAAAAGGATATCTAGT+TGG | - | Chr4:3608129-3608148 | None:intergenic | 35.0% | |
| GTCCTAACATAGTGAAATCT+TGG | - | Chr4:3608683-3608702 | None:intergenic | 35.0% | |
| TAATGCCACAAAGAAAGTAG+TGG | + | Chr4:3609418-3609437 | MsG0480018345.01.T01:CDS | 35.0% | |
| TATGGGTTCAAATCTAGTGT+TGG | + | Chr4:3608531-3608550 | MsG0480018345.01.T01:intron | 35.0% | |
| TCCGATTTAACCAAAGATCT+AGG | - | Chr4:3608256-3608275 | None:intergenic | 35.0% | |
| TTCAAAGGAGAGAGAAAAGA+CGG | + | Chr4:3609257-3609276 | MsG0480018345.01.T01:CDS | 35.0% | |
| TTTACCAAGCATAACACTAG+TGG | - | Chr4:3609471-3609490 | None:intergenic | 35.0% | |
| ! | TAGATGTTTTCAGAACTGTG+AGG | - | Chr4:3607682-3607701 | None:intergenic | 35.0% |
| ! | TTTGATGTGTCCTTTGCTAT+GGG | + | Chr4:3609521-3609540 | MsG0480018345.01.T01:CDS | 35.0% |
| ! | TTTTGATGTGTCCTTTGCTA+TGG | + | Chr4:3609520-3609539 | MsG0480018345.01.T01:CDS | 35.0% |
| !! | TCACAGTTCTGAAAACATCT+AGG | + | Chr4:3607681-3607700 | MsG0480018345.01.T01:CDS | 35.0% |
| !!! | CTCATCGATTCAGATTTTGT+TGG | + | Chr4:3607937-3607956 | MsG0480018345.01.T01:intron | 35.0% |
| AACCAAGTCTTCATCAACGA+TGG | + | Chr4:3609228-3609247 | MsG0480018345.01.T01:CDS | 40.0% | |
| AAGAATGACCATAACAGTGG+AGG | + | Chr4:3609328-3609347 | MsG0480018345.01.T01:CDS | 40.0% | |
| ACCAAGTCTTCATCAACGAT+GGG | + | Chr4:3609229-3609248 | MsG0480018345.01.T01:CDS | 40.0% | |
| AGTACATACCTTTCTACGCA+AGG | - | Chr4:3607840-3607859 | None:intergenic | 40.0% | |
| CAAAACCAATCCCATAGCAA+AGG | - | Chr4:3609534-3609553 | None:intergenic | 40.0% | |
| CCAACTGATCGAGCAATTAT+GGG | + | Chr4:3608514-3608533 | MsG0480018345.01.T01:intron | 40.0% | |
| CCCCAAGATTTCACTATGTT+AGG | + | Chr4:3608678-3608697 | MsG0480018345.01.T01:intron | 40.0% | |
| GCAAAGGACACATCAAAATC+AGG | - | Chr4:3609518-3609537 | None:intergenic | 40.0% | |
| GGGTGGAGAGATATTTCATT+AGG | - | Chr4:3607368-3607387 | None:intergenic | 40.0% | |
| GTCAAGAATGACCATAACAG+TGG | + | Chr4:3609325-3609344 | MsG0480018345.01.T01:CDS | 40.0% | |
| TAATGGGACCATTGAAACCT+CGG | + | Chr4:3609589-3609608 | MsG0480018345.01.T01:CDS | 40.0% | |
| TCCAACTGATCGAGCAATTA+TGG | + | Chr4:3608513-3608532 | MsG0480018345.01.T01:intron | 40.0% | |
| TCTTCCTTATCACGTGTGTT+TGG | - | Chr4:3607779-3607798 | None:intergenic | 40.0% | |
| TGCACCTTGATTTCAGTCAA+AGG | + | Chr4:3609003-3609022 | MsG0480018345.01.T01:intron | 40.0% | |
| ! | TGTTTTCAGAACTGTGAGGT+TGG | - | Chr4:3607678-3607697 | None:intergenic | 40.0% |
| ! | TTGCGTAGAAAGGTATGTAC+TGG | + | Chr4:3607839-3607858 | MsG0480018345.01.T01:intron | 40.0% |
| !! | CTAGGTTTTTCAGTGGTGAT+GGG | + | Chr4:3607699-3607718 | MsG0480018345.01.T01:CDS | 40.0% |
| !! | TCTAGGTTTTTCAGTGGTGA+TGG | + | Chr4:3607698-3607717 | MsG0480018345.01.T01:CDS | 40.0% |
| !!! | CTTTGCTATGGGATTGGTTT+TGG | + | Chr4:3609532-3609551 | MsG0480018345.01.T01:CDS | 40.0% |
| ACCAAGCATAACACTAGTGG+TGG | - | Chr4:3609468-3609487 | None:intergenic | 45.0% | |
| AGTCTTCATCAACGATGGGA+AGG | + | Chr4:3609233-3609252 | MsG0480018345.01.T01:CDS | 45.0% | |
| AGTTGCGTGAACAGTTTGAG+AGG | + | Chr4:3608730-3608749 | MsG0480018345.01.T01:intron | 45.0% | |
| ATCGTGTACCTCCACTGTTA+TGG | - | Chr4:3609339-3609358 | None:intergenic | 45.0% | |
| CAACGATGGGAAGGATTCAA+AGG | + | Chr4:3609242-3609261 | MsG0480018345.01.T01:CDS | 45.0% | |
| CAAGCATAACACTAGTGGTG+GGG | - | Chr4:3609466-3609485 | None:intergenic | 45.0% | |
| CCAAGCATAACACTAGTGGT+GGG | - | Chr4:3609467-3609486 | None:intergenic | 45.0% | |
| CCCATAATTGCTCGATCAGT+TGG | - | Chr4:3608517-3608536 | None:intergenic | 45.0% | |
| CTCAGCCACTACTTTCTTTG+TGG | - | Chr4:3609426-3609445 | None:intergenic | 45.0% | |
| GTAGACTCAGTGAGTGAACT+CGG | - | Chr4:3607918-3607937 | None:intergenic | 45.0% | |
| TCTTCTCACCTTGCGTAGAA+AGG | + | Chr4:3607829-3607848 | MsG0480018345.01.T01:CDS | 45.0% | |
| TGGACCAAACACACGTGATA+AGG | + | Chr4:3607772-3607791 | MsG0480018345.01.T01:CDS | 45.0% | |
| TTGGTCCATACGAGTCAAAC+CGG | - | Chr4:3607760-3607779 | None:intergenic | 45.0% | |
| ! | GTAAGGGACAACTCGTTTTC+CGG | + | Chr4:3607738-3607757 | MsG0480018345.01.T01:CDS | 45.0% |
| ! | GTGTGGAGTACCTCATTGAA+GGG | + | Chr4:3609366-3609385 | MsG0480018345.01.T01:CDS | 45.0% |
| ! | TCCCATCGTTGATGAAGACT+TGG | - | Chr4:3609233-3609252 | None:intergenic | 45.0% |
| ! | TGTGTCCTTTGCTATGGGAT+TGG | + | Chr4:3609526-3609545 | MsG0480018345.01.T01:CDS | 45.0% |
| !! | GTTTTCCGGTTTGACTCGTA+TGG | + | Chr4:3607752-3607771 | MsG0480018345.01.T01:CDS | 45.0% |
| !! | AAAAAATATTTATACATATT+TGG | + | Chr4:3608075-3608094 | MsG0480018345.01.T01:intron | 5.0% |
| !! | AAATTAAATAAATATGTTAT+TGG | - | Chr4:3608403-3608422 | None:intergenic | 5.0% |
| CCCACCACTAGTGTTATGCT+TGG | + | Chr4:3609464-3609483 | MsG0480018345.01.T01:CDS | 50.0% | |
| GGCTGAGATTCGTCGTAAAG+TGG | + | Chr4:3609439-3609458 | MsG0480018345.01.T01:CDS | 50.0% | |
| GTGGGAAACACCCTTCAATG+AGG | - | Chr4:3609379-3609398 | None:intergenic | 50.0% | |
| ! | CAATGAGGTACTCCACACCT+GGG | - | Chr4:3609364-3609383 | None:intergenic | 50.0% |
| ! | GGTGTGGAGTACCTCATTGA+AGG | + | Chr4:3609365-3609384 | MsG0480018345.01.T01:CDS | 50.0% |
| ! | TCAATGAGGTACTCCACACC+TGG | - | Chr4:3609365-3609384 | None:intergenic | 50.0% |
| AGGGTGCACCGAGGTTTCAA+TGG | - | Chr4:3609600-3609619 | None:intergenic | 55.0% | |
| GGTACACGATAACCCAGGTG+TGG | + | Chr4:3609349-3609368 | MsG0480018345.01.T01:CDS | 55.0% | |
| TTCTGTAGTAGGGTGCACCG+AGG | - | Chr4:3609609-3609628 | None:intergenic | 55.0% | |
| ! | GTGGAGGTACACGATAACCC+AGG | + | Chr4:3609344-3609363 | MsG0480018345.01.T01:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr4 | gene | 3607316 | 3609805 | 3607316 | ID=MsG0480018345.01;Name=MsG0480018345.01 |
| Chr4 | mRNA | 3607316 | 3609805 | 3607316 | ID=MsG0480018345.01.T01;Parent=MsG0480018345.01;Name=MsG0480018345.01.T01;_AED=0.46;_eAED=0.46;_QI=307|1|1|1|0|0|2|171|211 |
| Chr4 | exon | 3607316 | 3607850 | 3607316 | ID=MsG0480018345.01.T01:exon:1442;Parent=MsG0480018345.01.T01 |
| Chr4 | exon | 3609227 | 3609805 | 3609227 | ID=MsG0480018345.01.T01:exon:1443;Parent=MsG0480018345.01.T01 |
| Chr4 | five_prime_UTR | 3607316 | 3607622 | 3607316 | ID=MsG0480018345.01.T01:five_prime_utr;Parent=MsG0480018345.01.T01 |
| Chr4 | CDS | 3607623 | 3607850 | 3607623 | ID=MsG0480018345.01.T01:cds;Parent=MsG0480018345.01.T01 |
| Chr4 | CDS | 3609227 | 3609634 | 3609227 | ID=MsG0480018345.01.T01:cds;Parent=MsG0480018345.01.T01 |
| Chr4 | three_prime_UTR | 3609635 | 3609805 | 3609635 | ID=MsG0480018345.01.T01:three_prime_utr;Parent=MsG0480018345.01.T01 |
| Gene Sequence |
| Protein sequence |
