AlfalfaGEDB | MsG0480018345.01

M. sativa cultivar ZhongmuNo.1 / MsG0480018345.01

KEGG: -
GO: -
PFAM: PF04525

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480018345.01.T01	XP_003604378.1	99.052	211	2	0	1	211	1	211	1.12E-153	434

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480018345.01.T01	Q9LVZ8	56.459	209	87	2	3	211	16	220	1.21E-82	248

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480018345.01.T01	B7FGI9	99.052	211	2	0	1	211	1	211	5.33e-154	434

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080048940.01	MsG0480018345.01	0.812749	3.625595e-51	2.324152e-48
MsG0180000017.01	MsG0480018345.01	0.823701	1.201802e-53	1.042707e-50
MsG0180000151.01	MsG0480018345.01	0.826678	2.378386e-54	2.245789e-51
MsG0180000489.01	MsG0480018345.01	0.815048	1.128692e-51	7.698967e-49
MsG0180000491.01	MsG0480018345.01	0.807250	5.539089e-50	3.070223e-47
MsG0180000843.01	MsG0480018345.01	0.809181	2.148669e-50	1.252934e-47
MsG0180003352.01	MsG0480018345.01	0.821746	3.427580e-53	2.812647e-50
MsG0180005339.01	MsG0480018345.01	0.804205	2.415770e-49	1.238097e-46
MsG0180005803.01	MsG0480018345.01	0.825364	4.879827e-54	4.438398e-51
MsG0280006319.01	MsG0480018345.01	0.827085	1.900726e-54	1.816202e-51

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480018345.01.T01	MTR_4g010180	99.052	211	2	0	1	211	1	211	1.35e-157	434
MsG0480018345.01.T01	MTR_2g103840	68.720	211	65	1	2	211	13	223	4.99e-105	302
MsG0480018345.01.T01	MTR_2g103850	65.714	210	71	1	3	211	15	224	9.61e-104	298
MsG0480018345.01.T01	MTR_8g099000	35.938	192	101	4	18	190	43	231	2.68e-29	109
MsG0480018345.01.T01	MTR_7g072140	29.947	187	125	5	11	194	27	210	4.09e-26	100
MsG0480018345.01.T01	MTR_8g023060	32.418	182	116	4	16	193	20	198	8.58e-26	99.4
MsG0480018345.01.T01	MTR_7g072170	29.032	186	126	5	11	193	27	209	1.02e-23	94.7
MsG0480018345.01.T01	MTR_7g072270	27.895	190	130	6	7	193	22	207	3.30e-23	92.8
MsG0480018345.01.T01	MTR_7g072120	28.804	184	125	5	11	191	27	207	5.04e-23	92.4
MsG0480018345.01.T01	MTR_0650s0010	29.665	209	130	7	1	196	1	205	8.73e-22	89.0

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480018345.01.T01	AT3G15810	56.459	209	87	2	3	211	16	220	1.23e-83	248
MsG0480018345.01.T01	AT1G80120	62.201	209	72	5	6	211	5	209	1.17e-77	232
MsG0480018345.01.T01	AT2G38640	39.888	178	100	4	15	190	20	192	1.69e-30	111
MsG0480018345.01.T01	AT5G41590	37.297	185	102	7	18	190	37	219	2.50e-23	93.6
MsG0480018345.01.T01	AT5G01750	27.604	192	133	5	6	194	26	214	4.10e-21	87.4
MsG0480018345.01.T01	AT5G20640	30.049	203	125	6	7	194	12	212	1.00e-20	86.7
MsG0480018345.01.T01	AT2G05910	27.551	196	127	5	5	194	2	188	3.18e-20	84.7
MsG0480018345.01.T01	AT3G11740	26.816	179	124	4	20	194	16	191	7.94e-20	83.6
MsG0480018345.01.T01	AT1G53875	28.022	182	115	5	12	186	48	220	3.26e-16	74.7
MsG0480018345.01.T01	AT1G33840	24.084	191	135	3	6	191	26	211	3.34e-16	74.7

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Find 64 sgRNAs with CRISPR-Local

Find 118 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGAATATTTATTGAGCT+GGG	0.463914	4:-3607404	None:intergenic
AAAATCTTACAGCATCTTTG+TGG	0.417016	4:-3609395	None:intergenic
AAAGATCATCAATAATCGCA+CGG	0.646246	4:+3609303	MsG0480018345.01.T01:CDS
AAATCTTACAGCATCTTTGT+GGG	0.461184	4:-3609394	None:intergenic
AACCAAGTCTTCATCAACGA+TGG	0.577300	4:+3609228	MsG0480018345.01.T01:CDS
AAGAATGACCATAACAGTGG+AGG	0.694861	4:+3609328	MsG0480018345.01.T01:CDS
ACCAAGCATAACACTAGTGG+TGG	0.565653	4:-3609465	None:intergenic
ACCAAGTCTTCATCAACGAT+GGG	0.589490	4:+3609229	MsG0480018345.01.T01:CDS
AGGGTGCACCGAGGTTTCAA+TGG	0.544254	4:-3609597	None:intergenic
AGTACATACCTTTCTACGCA+AGG	0.600429	4:-3607837	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAATCTTACAGCATCTTTG+TGG	-	Chr4:3609398-3609417	None:intergenic	30.0%
AAAGATCATCAATAATCGCA+CGG	+	Chr4:3609303-3609322	MsG0480018345.01.T01:CDS	30.0%
AAATCTTACAGCATCTTTGT+GGG	-	Chr4:3609397-3609416	None:intergenic	30.0%
ACCTAGATCTTTGGTTAAAT+CGG	+	Chr4:3608252-3608271	MsG0480018345.01.T01:intron	30.0%
AGATTACTATCTCAAGTGAT+AGG	-	Chr4:3608607-3608626	None:intergenic	30.0%
ATATACAACTGAATTTGGGA+TGG	+	Chr4:3608431-3608450	MsG0480018345.01.T01:intron	30.0%
ATCTCTGTCTTAACTAACTT+TGG	+	Chr4:3607967-3607986	MsG0480018345.01.T01:intron	30.0%
ATTAGTAACGTTGTACGAAA+AGG	-	Chr4:3608141-3608160	None:intergenic	30.0%
ATTCATCAATCTTCTGTAGT+AGG	-	Chr4:3609620-3609639	None:intergenic	30.0%
CATATTCAAACCTAGATCTT+TGG	+	Chr4:3608243-3608262	MsG0480018345.01.T01:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr4	gene	3607316	3609805	3607316	ID=MsG0480018345.01;Name=MsG0480018345.01
Chr4	mRNA	3607316	3609805	3607316	ID=MsG0480018345.01.T01;Parent=MsG0480018345.01;Name=MsG0480018345.01.T01;_AED=0.46;_eAED=0.46;_QI=307\|1\|1\|1\|0\|0\|2\|171\|211
Chr4	exon	3607316	3607850	3607316	ID=MsG0480018345.01.T01:exon:1442;Parent=MsG0480018345.01.T01
Chr4	exon	3609227	3609805	3609227	ID=MsG0480018345.01.T01:exon:1443;Parent=MsG0480018345.01.T01
Chr4	five_prime_UTR	3607316	3607622	3607316	ID=MsG0480018345.01.T01:five_prime_utr;Parent=MsG0480018345.01.T01
Chr4	CDS	3607623	3607850	3607623	ID=MsG0480018345.01.T01:cds;Parent=MsG0480018345.01.T01
Chr4	CDS	3609227	3609634	3609227	ID=MsG0480018345.01.T01:cds;Parent=MsG0480018345.01.T01
Chr4	three_prime_UTR	3609635	3609805	3609635	ID=MsG0480018345.01.T01:three_prime_utr;Parent=MsG0480018345.01.T01

Gene Sequence

>MsG0480018345.01.T01

ATGAATAACGAAGAGTTAGTTATTCAAGATGAGTATGTATACAAAGAAGAAACCAACCTCACAGTTCTGAAAACATCTAGGTTTTTCAGTGGTGATGGGTTTGTTGTGTATGATTGTAAGGGACAACTCGTTTTCCGGTTTGACTCGTATGGACCAAACACACGTGATAAGGAAGAACTTGTTCTTATGAACACACATGGTAGTTCTCTTCTCACCTTGCGTAGAAAGAAACCAAGTCTTCATCAACGATGGGAAGGATTCAAAGGAGAGAGAAAAGACGGTGATAAACCAATCTTCAATGTGAAAAGATCATCAATAATCGCACGGTCAAGAATGACCATAACAGTGGAGGTACACGATAACCCAGGTGTGGAGTACCTCATTGAAGGGTGTTTCCCACAAAGATGCTGTAAGATTTTTAATGCCACAAAGAAAGTAGTGGCTGAGATTCGTCGTAAAGTGGACCCCACCACTAGTGTTATGCTTGGTAAAGAAGTTTTCATGCTTTGTGTTCAACCTGATTTTGATGTGTCCTTTGCTATGGGATTGGTTTTGGTACTTGATCAAATCAATGGTGAGAATTTCTTTGATAATGGGACCATTGAAACCTCGGTGCACCCTACTACAGAAGATTGA

Protein sequence

>MsG0480018345.01.T01

MNNEELVIQDEYVYKEETNLTVLKTSRFFSGDGFVVYDCKGQLVFRFDSYGPNTRDKEELVLMNTHGSSLLTLRRKKPSLHQRWEGFKGERKDGDKPIFNVKRSSIIARSRMTITVEVHDNPGVEYLIEGCFPQRCCKIFNATKKVVAEIRRKVDPTTSVMLGKEVFMLCVQPDFDVSFAMGLVLVLDQINGENFFDNGTIETSVHPTTED*