Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0080048940.01.T01 | XP_003629706.1 | 98.33 | 479 | 8 | 0 | 1 | 479 | 1 | 479 | 0 | 946 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0080048940.01.T01 | Q9LHN7 | 60.768 | 469 | 179 | 2 | 11 | 479 | 4 | 467 | 0 | 575 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0080048940.01.T01 | G7LHY8 | 98.330 | 479 | 8 | 0 | 1 | 479 | 1 | 479 | 0.0 | 946 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080048621.01 | MsG0080048940.01 | 0.811544 | 6.640298e-51 | 4.121951e-48 |
| MsG0080048748.01 | MsG0080048940.01 | 0.834066 | 3.715362e-56 | 4.360008e-53 |
| MsG0080048849.01 | MsG0080048940.01 | 0.801498 | 8.752806e-49 | 4.186453e-46 |
| MsG0080048938.01 | MsG0080048940.01 | 0.825724 | 4.010953e-54 | 3.685852e-51 |
| MsG0080048939.01 | MsG0080048940.01 | 0.821744 | 3.430704e-53 | 2.815116e-50 |
| MsG0080048940.01 | MsG0180000114.01 | 0.802056 | 6.723674e-49 | 3.261718e-46 |
| MsG0080048940.01 | MsG0180000151.01 | 0.832109 | 1.140349e-55 | 1.262142e-52 |
| MsG0080048940.01 | MsG0180000599.01 | 0.811909 | 5.528949e-51 | 3.465301e-48 |
| MsG0080048940.01 | MsG0180002184.01 | 0.810837 | 9.448495e-51 | 5.756729e-48 |
| MsG0080048940.01 | MsG0180004025.01 | 0.826252 | 3.003376e-54 | 2.801768e-51 |
| MsG0080048940.01 | MsG0180005339.01 | 0.824500 | 7.806717e-54 | 6.927031e-51 |
| MsG0080048940.01 | MsG0180006054.01 | 0.806338 | 8.633455e-50 | 4.674062e-47 |
| MsG0080048940.01 | MsG0280006753.01 | -0.806340 | 8.625544e-50 | 4.669975e-47 |
| MsG0080048940.01 | MsG0280009507.01 | 0.801079 | 1.066128e-48 | 5.045806e-46 |
| MsG0080048940.01 | MsG0380012005.01 | 0.806043 | 9.964767e-50 | 5.354404e-47 |
| MsG0080048940.01 | MsG0380014727.01 | 0.842090 | 3.197095e-58 | 4.794831e-55 |
| MsG0080048940.01 | MsG0380014750.01 | 0.831967 | 1.236095e-55 | 1.362639e-52 |
| MsG0080048940.01 | MsG0380015847.01 | -0.828893 | 6.977072e-55 | 7.026701e-52 |
| MsG0080048940.01 | MsG0380015891.01 | 0.802932 | 4.436541e-49 | 2.200727e-46 |
| MsG0080048940.01 | MsG0380016182.01 | 0.822511 | 2.278568e-53 | 1.911197e-50 |
| MsG0080048940.01 | MsG0380017085.01 | 0.819056 | 1.419154e-52 | 1.080592e-49 |
| MsG0080048940.01 | MsG0380017338.01 | 0.800541 | 1.373070e-48 | 6.410139e-46 |
| MsG0080048940.01 | MsG0380017793.01 | 0.801188 | 1.013111e-48 | 4.807859e-46 |
| MsG0080048940.01 | MsG0480018345.01 | 0.812749 | 3.625595e-51 | 2.324152e-48 |
| MsG0080048940.01 | MsG0480019384.01 | 0.809127 | 2.206382e-50 | 1.284758e-47 |
| MsG0080048940.01 | MsG0480020024.01 | 0.811181 | 7.960065e-51 | 4.894065e-48 |
| MsG0080048940.01 | MsG0480020322.01 | 0.815004 | 1.154472e-51 | 7.865814e-49 |
| MsG0080048940.01 | MsG0480020323.01 | 0.814103 | 1.826659e-51 | 1.214570e-48 |
| MsG0080048940.01 | MsG0480021207.01 | 0.819333 | 1.227291e-52 | 9.415717e-50 |
| MsG0080048940.01 | MsG0480022535.01 | 0.819932 | 8.958480e-53 | 6.989753e-50 |
| MsG0080048940.01 | MsG0480023044.01 | 0.869091 | 4.013401e-66 | 1.487121e-62 |
| MsG0080048940.01 | MsG0480023045.01 | 0.805269 | 1.448046e-49 | 7.627663e-47 |
| MsG0080048940.01 | MsG0580024775.01 | 0.812655 | 3.800414e-51 | 2.430194e-48 |
| MsG0080048940.01 | MsG0580025832.01 | 0.818277 | 2.132343e-52 | 1.588968e-49 |
| MsG0080048940.01 | MsG0580026304.01 | 0.809202 | 2.126508e-50 | 1.240745e-47 |
| MsG0080048940.01 | MsG0580028419.01 | 0.823997 | 1.024396e-53 | 8.960165e-51 |
| MsG0080048940.01 | MsG0580029912.01 | 0.805180 | 1.511478e-49 | 7.943778e-47 |
| MsG0080048940.01 | MsG0580029914.01 | 0.811089 | 8.335372e-51 | 5.112410e-48 |
| MsG0080048940.01 | MsG0680030566.01 | -0.800158 | 1.643168e-48 | 7.596528e-46 |
| MsG0080048940.01 | MsG0680032058.01 | 0.806582 | 7.669842e-50 | 4.178255e-47 |
| MsG0080048940.01 | MsG0680032460.01 | -0.802902 | 4.500389e-49 | 2.230759e-46 |
| MsG0080048940.01 | MsG0680033602.01 | 0.803112 | 4.071311e-49 | 2.028799e-46 |
| MsG0080048940.01 | MsG0680034782.01 | 0.813994 | 1.930856e-51 | 1.280046e-48 |
| MsG0080048940.01 | MsG0780035960.01 | 0.813280 | 2.772898e-51 | 1.803012e-48 |
| MsG0080048940.01 | MsG0780036803.01 | 0.803796 | 2.938069e-49 | 1.490096e-46 |
| MsG0080048940.01 | MsG0780037105.01 | 0.827807 | 1.275640e-54 | 1.244706e-51 |
| MsG0080048940.01 | MsG0780038833.01 | 0.804231 | 2.385298e-49 | 1.223290e-46 |
| MsG0080048940.01 | MsG0780039336.01 | 0.812189 | 4.804637e-51 | 3.034492e-48 |
| MsG0080048940.01 | MsG0780039438.01 | 0.804736 | 1.871641e-49 | 9.725707e-47 |
| MsG0080048940.01 | MsG0780039964.01 | 0.807171 | 5.757679e-50 | 3.184759e-47 |
| MsG0080048940.01 | MsG0780040177.01 | 0.817953 | 2.524053e-52 | 1.864209e-49 |
| MsG0080048940.01 | MsG0780040235.01 | 0.800741 | 1.249923e-48 | 5.864878e-46 |
| MsG0080048940.01 | MsG0780041747.01 | 0.824486 | 7.866130e-54 | 6.976926e-51 |
| MsG0080048940.01 | MsG0880041852.01 | 0.831425 | 1.681630e-55 | 1.824092e-52 |
| MsG0080048940.01 | MsG0880042086.01 | 0.831771 | 1.381636e-55 | 1.514457e-52 |
| MsG0080048940.01 | MsG0880043157.01 | 0.803581 | 3.255321e-49 | 1.642024e-46 |
| MsG0080048940.01 | MsG0880043829.01 | 0.804290 | 2.319000e-49 | 1.191152e-46 |
| MsG0080048940.01 | MsG0880045783.01 | 0.828598 | 8.224401e-55 | 8.212846e-52 |
| MsG0080048940.01 | MsG0880045992.01 | 0.801529 | 8.626478e-49 | 4.129165e-46 |
| MsG0080048940.01 | MsG0880047481.01 | -0.821759 | 3.403209e-53 | 2.793795e-50 |
PPI
| Gene1 | Gene2 | Type |
|---|---|---|
| MsG0380011868.01 | MsG0080048940.01 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0080048940.01.T01 | MTR_8g085630 | 98.330 | 479 | 8 | 0 | 1 | 479 | 1 | 479 | 0.0 | 946 |
| MsG0080048940.01.T01 | MTR_5g064750 | 64.719 | 445 | 152 | 1 | 35 | 479 | 20 | 459 | 0.0 | 585 |
| MsG0080048940.01.T01 | MTR_1g112950 | 48.444 | 450 | 229 | 2 | 26 | 475 | 12 | 458 | 5.13e-152 | 441 |
| MsG0080048940.01.T01 | MTR_5g026780 | 47.846 | 441 | 228 | 2 | 28 | 468 | 34 | 472 | 1.01e-149 | 436 |
| MsG0080048940.01.T01 | MTR_5g026780 | 47.846 | 441 | 228 | 2 | 28 | 468 | 18 | 456 | 1.22e-149 | 436 |
| MsG0080048940.01.T01 | MTR_0031s0060 | 45.393 | 445 | 216 | 3 | 34 | 478 | 134 | 551 | 1.19e-135 | 406 |
| MsG0080048940.01.T01 | MTR_5g005160 | 48.402 | 438 | 222 | 3 | 33 | 469 | 3 | 437 | 9.31e-133 | 393 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0080048940.01.T01 | AT3G13620 | 60.768 | 469 | 179 | 2 | 11 | 479 | 4 | 467 | 0.0 | 575 |
| MsG0080048940.01.T01 | AT1G31830 | 48.451 | 452 | 230 | 2 | 28 | 479 | 37 | 485 | 3.82e-157 | 456 |
| MsG0080048940.01.T01 | AT1G31830 | 48.451 | 452 | 230 | 2 | 28 | 479 | 21 | 469 | 3.98e-157 | 455 |
| MsG0080048940.01.T01 | AT5G05630 | 49.091 | 440 | 223 | 1 | 29 | 468 | 42 | 480 | 2.36e-154 | 448 |
| MsG0080048940.01.T01 | AT1G31820 | 49.451 | 455 | 220 | 3 | 34 | 481 | 30 | 481 | 1.37e-152 | 443 |
| MsG0080048940.01.T01 | AT3G19553 | 50.847 | 472 | 215 | 6 | 18 | 479 | 4 | 468 | 2.61e-148 | 432 |
Find 85 sgRNAs with CRISPR-Local
Find 129 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAAATGGTGGGTTTGTTATT+TGG | 0.119761 | contig551end:+21570 | MsG0080048940.01.T01:CDS |
| AGTACTTTCTTAACATTCTT+AGG | 0.151243 | contig551end:+22595 | MsG0080048940.01.T01:CDS |
| CTCATCTACTTTGAGGTATC+TGG | 0.167645 | contig551end:+21413 | MsG0080048940.01.T01:CDS |
| AAGGTTCCACTTGGATTATT+TGG | 0.196544 | contig551end:+22493 | MsG0080048940.01.T01:CDS |
| TCTGGAATACTCCAAATAAA+TGG | 0.207381 | contig551end:-21509 | None:intergenic |
| CTGGGAATTGGTTGAAATAT+TGG | 0.212399 | contig551end:+22164 | MsG0080048940.01.T01:CDS |
| TTGGATCTTCTTCTTCTCTT+TGG | 0.215166 | contig551end:-21340 | None:intergenic |
| TGCTGGATTGTTAACTTGTT+TGG | 0.222119 | contig551end:+22045 | MsG0080048940.01.T01:CDS |
| ACTAGCCACAAATACAATTT+TGG | 0.228986 | contig551end:-22575 | None:intergenic |
| TACAATGAAACGACCTTATA+AGG | 0.253963 | contig551end:+22474 | MsG0080048940.01.T01:CDS |
| AAATGGTGGGTTTGTTATTT+GGG | 0.257640 | contig551end:+21571 | MsG0080048940.01.T01:CDS |
| TTGAAATATTGGATGGAAAT+TGG | 0.269249 | contig551end:+22175 | MsG0080048940.01.T01:CDS |
| GGTTATACTGCAGTTGGTTT+AGG | 0.285281 | contig551end:+21806 | MsG0080048940.01.T01:CDS |
| ATTTGGGCTAATGAAGCTTT+TGG | 0.289227 | contig551end:+21587 | MsG0080048940.01.T01:CDS |
| AATCCAAGTGGAACCTTATA+AGG | 0.308677 | contig551end:-22487 | None:intergenic |
| TGCCACTTGATCAAGAAGTT+TGG | 0.318408 | contig551end:+22104 | MsG0080048940.01.T01:CDS |
| CTGGTTTGATTGCTGGGAAT+TGG | 0.320667 | contig551end:+22152 | MsG0080048940.01.T01:CDS |
| GGGTTATATAATTCCTTTGT+TGG | 0.320719 | contig551end:+22066 | MsG0080048940.01.T01:CDS |
| CAATGGAGTAGGAGATAAAT+TGG | 0.322700 | contig551end:+22672 | MsG0080048940.01.T01:CDS |
| AGATAATCTATACATAGAAT+TGG | 0.327996 | contig551end:-21677 | None:intergenic |
| CCTAGTAGATGGTTAAGTTT+AGG | 0.331119 | contig551end:+21887 | MsG0080048940.01.T01:CDS |
| GCCACTTGATCAAGAAGTTT+GGG | 0.332993 | contig551end:+22105 | MsG0080048940.01.T01:CDS |
| CATGTGGCTGGTTTGATTGC+TGG | 0.333123 | contig551end:+22145 | MsG0080048940.01.T01:CDS |
| GTATAGTTTAGGGATGCTTT+TGG | 0.333266 | contig551end:+22414 | MsG0080048940.01.T01:CDS |
| GCTGGATTGTTAACTTGTTT+GGG | 0.336043 | contig551end:+22046 | MsG0080048940.01.T01:CDS |
| AATCTTTCTCATCTACTTTG+AGG | 0.359694 | contig551end:+21406 | MsG0080048940.01.T01:CDS |
| TAAACCAGAATAATTCAAAA+AGG | 0.378273 | contig551end:-21774 | None:intergenic |
| GAGGTATCTGGTGGACCTTA+TGG | 0.387052 | contig551end:+21425 | MsG0080048940.01.T01:CDS |
| TTATAAGGTCGTTTCATTGT+AGG | 0.398852 | contig551end:-22472 | None:intergenic |
| TGCTACCAAAATTGTATTTG+TGG | 0.406271 | contig551end:+22570 | MsG0080048940.01.T01:CDS |
| ATAACAAACCCACCATTTCC+AGG | 0.406978 | contig551end:-21566 | None:intergenic |
| TATAAGGTCGTTTCATTGTA+GGG | 0.413037 | contig551end:-22471 | None:intergenic |
| GTTTAGAAGATGTTGATGAT+AGG | 0.416793 | contig551end:-21318 | None:intergenic |
| ATTCCTTTGTTGGCTACTAC+CGG | 0.417944 | contig551end:+22076 | MsG0080048940.01.T01:CDS |
| ATGTGGCTGGTTTGATTGCT+GGG | 0.424967 | contig551end:+22146 | MsG0080048940.01.T01:CDS |
| GTACTTTCTTAACATTCTTA+GGG | 0.425423 | contig551end:+22596 | MsG0080048940.01.T01:CDS |
| TATTCTGGTTTAGCTATAGT+TGG | 0.426561 | contig551end:+21785 | MsG0080048940.01.T01:CDS |
| CTGGAATACTCCAAATAAAT+GGG | 0.440921 | contig551end:-21508 | None:intergenic |
| TCCTTTGTTGGCTACTACCG+GGG | 0.443324 | contig551end:+22078 | MsG0080048940.01.T01:CDS |
| ACATTAACACAAAGGGCAAA+AGG | 0.443673 | contig551end:-21838 | None:intergenic |
| ACTGTTGCTTCTTCACCATA+AGG | 0.446104 | contig551end:-21440 | None:intergenic |
| TCTGCAGTTAAAAGAGCCTC+TGG | 0.446328 | contig551end:-21527 | None:intergenic |
| GCTACAACATTCCCTGGAAA+TGG | 0.446788 | contig551end:+21554 | MsG0080048940.01.T01:CDS |
| AAGTAGATGAGAAAGATTAG+AGG | 0.454596 | contig551end:-21401 | None:intergenic |
| TGAATCTTTGTAAGTCTAAG+AGG | 0.460463 | contig551end:+22638 | MsG0080048940.01.T01:CDS |
| TTCCTTTGTTGGCTACTACC+GGG | 0.460814 | contig551end:+22077 | MsG0080048940.01.T01:CDS |
| CGACCTTATAAGGTTCCACT+TGG | 0.461269 | contig551end:+22484 | MsG0080048940.01.T01:CDS |
| CTAAAATTGATCCTAGTAGA+TGG | 0.462759 | contig551end:+21876 | MsG0080048940.01.T01:CDS |
| GATAATCTATACATAGAATT+GGG | 0.465775 | contig551end:-21676 | None:intergenic |
| ATCAAAGACATTAACACAAA+GGG | 0.476966 | contig551end:-21845 | None:intergenic |
| CCTAAACTTAACCATCTACT+AGG | 0.478755 | contig551end:-21887 | None:intergenic |
| ATGGTTAAGTTTAGGACAAG+AGG | 0.482198 | contig551end:+21895 | MsG0080048940.01.T01:CDS |
| ATCAAGAAGTTTGGGTTGGT+GGG | 0.495054 | contig551end:+22113 | MsG0080048940.01.T01:CDS |
| GATCAAGAAGTTTGGGTTGG+TGG | 0.497496 | contig551end:+22112 | MsG0080048940.01.T01:CDS |
| GGTAAACCTGAAGACAAAAC+AGG | 0.502863 | contig551end:-21713 | None:intergenic |
| CATTAACACAAAGGGCAAAA+GGG | 0.503892 | contig551end:-21837 | None:intergenic |
| GATAGTGCTAGTACTTTAGC+TGG | 0.506350 | contig551end:+21977 | MsG0080048940.01.T01:CDS |
| ATAGTTGGTTATACTGCAGT+TGG | 0.509080 | contig551end:+21800 | MsG0080048940.01.T01:CDS |
| GAAGCAACAGTAAGTGCTGC+AGG | 0.513783 | contig551end:+21452 | MsG0080048940.01.T01:CDS |
| AGTAGATGAGAAAGATTAGA+GGG | 0.514522 | contig551end:-21400 | None:intergenic |
| TGGTTAAGTTTAGGACAAGA+GGG | 0.515356 | contig551end:+21896 | MsG0080048940.01.T01:CDS |
| GTGGTTTAACACACCTTGGA+TGG | 0.518671 | contig551end:+22312 | MsG0080048940.01.T01:CDS |
| GAATTAGCTACAACATTCCC+TGG | 0.531597 | contig551end:+21548 | MsG0080048940.01.T01:CDS |
| ACATAAACCAACAGCACAGA+TGG | 0.538480 | contig551end:-22538 | None:intergenic |
| CTTGATCAAGAAGTTTGGGT+TGG | 0.540498 | contig551end:+22109 | MsG0080048940.01.T01:CDS |
| TGGATTGAATTCAATGGAGT+AGG | 0.540871 | contig551end:+22661 | MsG0080048940.01.T01:CDS |
| TTGCTTCTTTCCTTAAGTTG+AGG | 0.541531 | contig551end:+22440 | MsG0080048940.01.T01:CDS |
| AAGAGGTGGATTGAATTCAA+TGG | 0.542090 | contig551end:+22655 | MsG0080048940.01.T01:CDS |
| CAAAGTGGTTTAACACACCT+TGG | 0.542336 | contig551end:+22308 | MsG0080048940.01.T01:CDS |
| ATCTACTTTGAGGTATCTGG+TGG | 0.545094 | contig551end:+21416 | MsG0080048940.01.T01:CDS |
| AAGTTTAGGACAAGAGGGTG+TGG | 0.548272 | contig551end:+21901 | MsG0080048940.01.T01:CDS |
| ACCCAAACTTCTTGATCAAG+TGG | 0.548962 | contig551end:-22106 | None:intergenic |
| ACAACATTCCCTGGAAATGG+TGG | 0.555951 | contig551end:+21557 | MsG0080048940.01.T01:CDS |
| ATTTCAACAATAATATCACT+TGG | 0.558408 | contig551end:+22343 | MsG0080048940.01.T01:CDS |
| TTGATCAAGTGGCATAGCCC+CGG | 0.575447 | contig551end:-22095 | None:intergenic |
| TAACAAACCCACCATTTCCA+GGG | 0.582040 | contig551end:-21565 | None:intergenic |
| GAAATCAAAATTGCCATCCA+AGG | 0.585439 | contig551end:-22325 | None:intergenic |
| ATCAAACCAAATAATCCAAG+TGG | 0.590306 | contig551end:-22499 | None:intergenic |
| GAATTGGTTGAAATATTGGA+TGG | 0.593097 | contig551end:+22168 | MsG0080048940.01.T01:CDS |
| CAACATTCCCTGGAAATGGT+GGG | 0.601942 | contig551end:+21558 | MsG0080048940.01.T01:CDS |
| ATCTTTGTAAGTCTAAGAGG+TGG | 0.616056 | contig551end:+22641 | MsG0080048940.01.T01:CDS |
| ATTTATTTGGAGTATTCCAG+AGG | 0.619283 | contig551end:+21511 | MsG0080048940.01.T01:CDS |
| AATCAAAGACATTAACACAA+AGG | 0.619734 | contig551end:-21846 | None:intergenic |
| TATTTGGTGAAAGGTCAAAG+TGG | 0.630257 | contig551end:+22293 | MsG0080048940.01.T01:CDS |
| GCCCCGGTAGTAGCCAACAA+AGG | 0.665760 | contig551end:-22079 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTAATTTTTTGTATAGTTTA+GGG | + | contig551end:22404-22423 | MsG0080048940.01.T01:CDS | 10.0% |
| !!! | TTTTTTTCAATACTATTTTT+TGG | + | contig551end:21939-21958 | MsG0080048940.01.T01:CDS | 10.0% |
| !!! | GTTAATTTTTTGTATAGTTT+AGG | + | contig551end:22403-22422 | MsG0080048940.01.T01:CDS | 15.0% |
| !!! | TTATAATTTTCCCATTTATT+TGG | + | contig551end:21498-21517 | MsG0080048940.01.T01:CDS | 15.0% |
| !! | ACTATACAAAAAATTAACAG+TGG | - | contig551end:22401-22420 | None:intergenic | 20.0% |
| !! | AGATAATCTATACATAGAAT+TGG | - | contig551end:21680-21699 | None:intergenic | 20.0% |
| !! | ATTTCAACAATAATATCACT+TGG | + | contig551end:22343-22362 | MsG0080048940.01.T01:CDS | 20.0% |
| !! | GATAATCTATACATAGAATT+GGG | - | contig551end:21679-21698 | None:intergenic | 20.0% |
| !! | TAAACCAGAATAATTCAAAA+AGG | - | contig551end:21777-21796 | None:intergenic | 20.0% |
| !!! | TTTTTGGAACTTGAATTTTT+GGG | + | contig551end:21955-21974 | MsG0080048940.01.T01:CDS | 20.0% |
| !!! | TTTTTTGGAACTTGAATTTT+TGG | + | contig551end:21954-21973 | MsG0080048940.01.T01:CDS | 20.0% |
| !!! | TTTTTTTGTGATTTGGTTTT+GGG | - | contig551end:21368-21387 | None:intergenic | 20.0% |
| !!! | TTTTTTTTGTGATTTGGTTT+TGG | - | contig551end:21369-21388 | None:intergenic | 20.0% |
| ! | AATCAAAGACATTAACACAA+AGG | - | contig551end:21849-21868 | None:intergenic | 25.0% |
| ! | AGTACTTTCTTAACATTCTT+AGG | + | contig551end:22595-22614 | MsG0080048940.01.T01:CDS | 25.0% |
| ! | ATCAAAGACATTAACACAAA+GGG | - | contig551end:21848-21867 | None:intergenic | 25.0% |
| ! | GGATTCATACCAAAAATATT+TGG | + | contig551end:22277-22296 | MsG0080048940.01.T01:CDS | 25.0% |
| ! | GTACTTTCTTAACATTCTTA+GGG | + | contig551end:22596-22615 | MsG0080048940.01.T01:CDS | 25.0% |
| ! | TTGAAATATTGGATGGAAAT+TGG | + | contig551end:22175-22194 | MsG0080048940.01.T01:CDS | 25.0% |
| !! | TACCAAAAATATTTGGTGAA+AGG | + | contig551end:22284-22303 | MsG0080048940.01.T01:CDS | 25.0% |
| !! | TTGTCCTTTTTGAATTATTC+TGG | + | contig551end:21770-21789 | MsG0080048940.01.T01:CDS | 25.0% |
| !!! | TGCTAGTTTTTTTTGTGATT+TGG | - | contig551end:21375-21394 | None:intergenic | 25.0% |
| !!! | TTTTTTGTGATTTGGTTTTG+GGG | - | contig551end:21367-21386 | None:intergenic | 25.0% |
| AAGTAGATGAGAAAGATTAG+AGG | - | contig551end:21404-21423 | None:intergenic | 30.0% | |
| AATCCAAGAATTGCAAAAAG+TGG | - | contig551end:21479-21498 | None:intergenic | 30.0% | |
| AATCTTTCTCATCTACTTTG+AGG | + | contig551end:21406-21425 | MsG0080048940.01.T01:CDS | 30.0% | |
| ACAAAAATAGACACAATACG+AGG | - | contig551end:21737-21756 | None:intergenic | 30.0% | |
| AGTAGATGAGAAAGATTAGA+GGG | - | contig551end:21403-21422 | None:intergenic | 30.0% | |
| ATCAAACCAAATAATCCAAG+TGG | - | contig551end:22502-22521 | None:intergenic | 30.0% | |
| CTAAAATTGATCCTAGTAGA+TGG | + | contig551end:21876-21895 | MsG0080048940.01.T01:CDS | 30.0% | |
| CTGGAATACTCCAAATAAAT+GGG | - | contig551end:21511-21530 | None:intergenic | 30.0% | |
| GAATTGGTTGAAATATTGGA+TGG | + | contig551end:22168-22187 | MsG0080048940.01.T01:CDS | 30.0% | |
| GGGTTATATAATTCCTTTGT+TGG | + | contig551end:22066-22085 | MsG0080048940.01.T01:CDS | 30.0% | |
| TACAATGAAACGACCTTATA+AGG | + | contig551end:22474-22493 | MsG0080048940.01.T01:CDS | 30.0% | |
| TATAAGGTCGTTTCATTGTA+GGG | - | contig551end:22474-22493 | None:intergenic | 30.0% | |
| TGAATCTTTGTAAGTCTAAG+AGG | + | contig551end:22638-22657 | MsG0080048940.01.T01:CDS | 30.0% | |
| TGCTACCAAAATTGTATTTG+TGG | + | contig551end:22570-22589 | MsG0080048940.01.T01:CDS | 30.0% | |
| TTATAAGGTCGTTTCATTGT+AGG | - | contig551end:22475-22494 | None:intergenic | 30.0% | |
| ! | ACTAGCCACAAATACAATTT+TGG | - | contig551end:22578-22597 | None:intergenic | 30.0% |
| ! | ATTTATTTGGAGTATTCCAG+AGG | + | contig551end:21511-21530 | MsG0080048940.01.T01:CDS | 30.0% |
| ! | CATCTACTAGGATCAATTTT+AGG | - | contig551end:21878-21897 | None:intergenic | 30.0% |
| ! | GACCTTTCACCAAATATTTT+TGG | - | contig551end:22289-22308 | None:intergenic | 30.0% |
| ! | GGATATTGGAAATTCTTTTG+TGG | + | contig551end:21632-21651 | MsG0080048940.01.T01:CDS | 30.0% |
| ! | TCTGGAATACTCCAAATAAA+TGG | - | contig551end:21512-21531 | None:intergenic | 30.0% |
| !! | AAATGGTGGGTTTGTTATTT+GGG | + | contig551end:21571-21590 | MsG0080048940.01.T01:CDS | 30.0% |
| !! | GTTTAGAAGATGTTGATGAT+AGG | - | contig551end:21321-21340 | None:intergenic | 30.0% |
| !! | TATTCTGGTTTAGCTATAGT+TGG | + | contig551end:21785-21804 | MsG0080048940.01.T01:CDS | 30.0% |
| !!! | GCTTTAGGAAAAGTTTTATG+TGG | - | contig551end:22016-22035 | None:intergenic | 30.0% |
| !!! | GGAATTTTTTCCTCAACTTA+AGG | - | contig551end:22453-22472 | None:intergenic | 30.0% |
| AAGGTTCCACTTGGATTATT+TGG | + | contig551end:22493-22512 | MsG0080048940.01.T01:CDS | 35.0% | |
| AATCCAAGTGGAACCTTATA+AGG | - | contig551end:22490-22509 | None:intergenic | 35.0% | |
| ACATTAACACAAAGGGCAAA+AGG | - | contig551end:21841-21860 | None:intergenic | 35.0% | |
| ATAGTTGGTTATACTGCAGT+TGG | + | contig551end:21800-21819 | MsG0080048940.01.T01:CDS | 35.0% | |
| ATCTTTGTAAGTCTAAGAGG+TGG | + | contig551end:22641-22660 | MsG0080048940.01.T01:CDS | 35.0% | |
| CAATGGAGTAGGAGATAAAT+TGG | + | contig551end:22672-22691 | MsG0080048940.01.T01:CDS | 35.0% | |
| CATTAACACAAAGGGCAAAA+GGG | - | contig551end:21840-21859 | None:intergenic | 35.0% | |
| CCTAAACTTAACCATCTACT+AGG | - | contig551end:21890-21909 | None:intergenic | 35.0% | |
| CCTAGTAGATGGTTAAGTTT+AGG | + | contig551end:21887-21906 | MsG0080048940.01.T01:CDS | 35.0% | |
| CTGGGAATTGGTTGAAATAT+TGG | + | contig551end:22164-22183 | MsG0080048940.01.T01:CDS | 35.0% | |
| GAAATCAAAATTGCCATCCA+AGG | - | contig551end:22328-22347 | None:intergenic | 35.0% | |
| TGGATTGAATTCAATGGAGT+AGG | + | contig551end:22661-22680 | MsG0080048940.01.T01:CDS | 35.0% | |
| TTGGATCTTCTTCTTCTCTT+TGG | - | contig551end:21343-21362 | None:intergenic | 35.0% | |
| ! | AGTGCTGCATATCAACTTTT+AGG | + | contig551end:22241-22260 | MsG0080048940.01.T01:CDS | 35.0% |
| ! | ATGAAGCTTTTGGTCCATTT+TGG | + | contig551end:21597-21616 | MsG0080048940.01.T01:CDS | 35.0% |
| ! | ATGGTTAAGTTTAGGACAAG+AGG | + | contig551end:21895-21914 | MsG0080048940.01.T01:CDS | 35.0% |
| ! | ATTTGGGCTAATGAAGCTTT+TGG | + | contig551end:21587-21606 | MsG0080048940.01.T01:CDS | 35.0% |
| ! | GTATAGTTTAGGGATGCTTT+TGG | + | contig551end:22414-22433 | MsG0080048940.01.T01:CDS | 35.0% |
| ! | TATTTGGTGAAAGGTCAAAG+TGG | + | contig551end:22293-22312 | MsG0080048940.01.T01:CDS | 35.0% |
| ! | TGAAGCTTTTGGTCCATTTT+GGG | + | contig551end:21598-21617 | MsG0080048940.01.T01:CDS | 35.0% |
| ! | TGGTTAAGTTTAGGACAAGA+GGG | + | contig551end:21896-21915 | MsG0080048940.01.T01:CDS | 35.0% |
| ! | TTGCTTCTTTCCTTAAGTTG+AGG | + | contig551end:22440-22459 | MsG0080048940.01.T01:CDS | 35.0% |
| !! | AAGAGGTGGATTGAATTCAA+TGG | + | contig551end:22655-22674 | MsG0080048940.01.T01:CDS | 35.0% |
| !! | ACTTTTAGGTATGTCTGACT+TGG | + | contig551end:22255-22274 | MsG0080048940.01.T01:CDS | 35.0% |
| !! | CTTTTAGGTATGTCTGACTT+GGG | + | contig551end:22256-22275 | MsG0080048940.01.T01:CDS | 35.0% |
| !! | GAAATGGTGGGTTTGTTATT+TGG | + | contig551end:21570-21589 | MsG0080048940.01.T01:CDS | 35.0% |
| !! | GCTGGATTGTTAACTTGTTT+GGG | + | contig551end:22046-22065 | MsG0080048940.01.T01:CDS | 35.0% |
| !! | TGCTGGATTGTTAACTTGTT+TGG | + | contig551end:22045-22064 | MsG0080048940.01.T01:CDS | 35.0% |
| !!! | GGTGCTGTTTTGTCAATTAT+TGG | + | contig551end:22196-22215 | MsG0080048940.01.T01:CDS | 35.0% |
| ACATAAACCAACAGCACAGA+TGG | - | contig551end:22541-22560 | None:intergenic | 40.0% | |
| ACCCAAACTTCTTGATCAAG+TGG | - | contig551end:22109-22128 | None:intergenic | 40.0% | |
| ATAACAAACCCACCATTTCC+AGG | - | contig551end:21569-21588 | None:intergenic | 40.0% | |
| CAAAGTGGTTTAACACACCT+TGG | + | contig551end:22308-22327 | MsG0080048940.01.T01:CDS | 40.0% | |
| CCAGCAAAAAGCAAAGCTTT+AGG | - | contig551end:22031-22050 | None:intergenic | 40.0% | |
| CTTGATCAAGAAGTTTGGGT+TGG | + | contig551end:22109-22128 | MsG0080048940.01.T01:CDS | 40.0% | |
| GAATTAGCTACAACATTCCC+TGG | + | contig551end:21548-21567 | MsG0080048940.01.T01:CDS | 40.0% | |
| GATAGTGCTAGTACTTTAGC+TGG | + | contig551end:21977-21996 | MsG0080048940.01.T01:CDS | 40.0% | |
| GCCACTTGATCAAGAAGTTT+GGG | + | contig551end:22105-22124 | MsG0080048940.01.T01:CDS | 40.0% | |
| GGTAAACCTGAAGACAAAAC+AGG | - | contig551end:21716-21735 | None:intergenic | 40.0% | |
| TAACAAACCCACCATTTCCA+GGG | - | contig551end:21568-21587 | None:intergenic | 40.0% | |
| ! | AAGAGGGTGTGGAAAAAGAT+TGG | + | contig551end:21912-21931 | MsG0080048940.01.T01:CDS | 40.0% |
| ! | AAGCTTTTGGTCCATTTTGG+GGG | + | contig551end:21600-21619 | MsG0080048940.01.T01:CDS | 40.0% |
| ! | AATTTTGTGCTGCAGAGTGA+AGG | - | contig551end:21298-21317 | None:intergenic | 40.0% |
| ! | ACTGTTGCTTCTTCACCATA+AGG | - | contig551end:21443-21462 | None:intergenic | 40.0% |
| ! | ATTCCTTTGTTGGCTACTAC+CGG | + | contig551end:22076-22095 | MsG0080048940.01.T01:CDS | 40.0% |
| ! | ATTTTGTGCTGCAGAGTGAA+GGG | - | contig551end:21297-21316 | None:intergenic | 40.0% |
| ! | GAAGCTTTTGGTCCATTTTG+GGG | + | contig551end:21599-21618 | MsG0080048940.01.T01:CDS | 40.0% |
| ! | GGTTATACTGCAGTTGGTTT+AGG | + | contig551end:21806-21825 | MsG0080048940.01.T01:CDS | 40.0% |
| ! | GTGATTCCTGTTTTGTCTTC+AGG | + | contig551end:21707-21726 | MsG0080048940.01.T01:CDS | 40.0% |
| ! | TGCCACTTGATCAAGAAGTT+TGG | + | contig551end:22104-22123 | MsG0080048940.01.T01:CDS | 40.0% |
| ! | TTTTGTTCCATCTGTGCTGT+TGG | + | contig551end:22531-22550 | MsG0080048940.01.T01:CDS | 40.0% |
| !! | ATCAAGAAGTTTGGGTTGGT+GGG | + | contig551end:22113-22132 | MsG0080048940.01.T01:CDS | 40.0% |
| !! | ATCTACTTTGAGGTATCTGG+TGG | + | contig551end:21416-21435 | MsG0080048940.01.T01:CDS | 40.0% |
| !! | CTCATCTACTTTGAGGTATC+TGG | + | contig551end:21413-21432 | MsG0080048940.01.T01:CDS | 40.0% |
| !!! | CCTAAAGCTTTGCTTTTTGC+TGG | + | contig551end:22028-22047 | MsG0080048940.01.T01:CDS | 40.0% |
| !!! | GGTCCACTTTTTGCAATTCT+TGG | + | contig551end:21473-21492 | MsG0080048940.01.T01:CDS | 40.0% |
| !!! | TGTGATTTGGTTTTGGGGTT+TGG | - | contig551end:21362-21381 | None:intergenic | 40.0% |
| ACAACATTCCCTGGAAATGG+TGG | + | contig551end:21557-21576 | MsG0080048940.01.T01:CDS | 45.0% | |
| CAACATTCCCTGGAAATGGT+GGG | + | contig551end:21558-21577 | MsG0080048940.01.T01:CDS | 45.0% | |
| CGACCTTATAAGGTTCCACT+TGG | + | contig551end:22484-22503 | MsG0080048940.01.T01:CDS | 45.0% | |
| GCTACAACATTCCCTGGAAA+TGG | + | contig551end:21554-21573 | MsG0080048940.01.T01:CDS | 45.0% | |
| GTGGTTTAACACACCTTGGA+TGG | + | contig551end:22312-22331 | MsG0080048940.01.T01:CDS | 45.0% | |
| TCTGCAGTTAAAAGAGCCTC+TGG | - | contig551end:21530-21549 | None:intergenic | 45.0% | |
| ! | AAGTTTAGGACAAGAGGGTG+TGG | + | contig551end:21901-21920 | MsG0080048940.01.T01:CDS | 45.0% |
| ! | CTGGTTTGATTGCTGGGAAT+TGG | + | contig551end:22152-22171 | MsG0080048940.01.T01:CDS | 45.0% |
| ! | TTCCTTTGTTGGCTACTACC+GGG | + | contig551end:22077-22096 | MsG0080048940.01.T01:CDS | 45.0% |
| !! | ATGTGGCTGGTTTGATTGCT+GGG | + | contig551end:22146-22165 | MsG0080048940.01.T01:CDS | 45.0% |
| !! | CCATTTTGGGGGTCTCTTAT+GGG | + | contig551end:21611-21630 | MsG0080048940.01.T01:CDS | 45.0% |
| !! | GATCAAGAAGTTTGGGTTGG+TGG | + | contig551end:22112-22131 | MsG0080048940.01.T01:CDS | 45.0% |
| !! | TCCATTTTGGGGGTCTCTTA+TGG | + | contig551end:21610-21629 | MsG0080048940.01.T01:CDS | 45.0% |
| !! | TGGTGGGTATTTTGCACATG+TGG | + | contig551end:22129-22148 | MsG0080048940.01.T01:CDS | 45.0% |
| CCCATAAGAGACCCCCAAAA+TGG | - | contig551end:21614-21633 | None:intergenic | 50.0% | |
| GGGGGTCTCTTATGGGATAT+TGG | + | contig551end:21618-21637 | MsG0080048940.01.T01:CDS | 50.0% | |
| TTGATCAAGTGGCATAGCCC+CGG | - | contig551end:22098-22117 | None:intergenic | 50.0% | |
| ! | GAAGCAACAGTAAGTGCTGC+AGG | + | contig551end:21452-21471 | MsG0080048940.01.T01:CDS | 50.0% |
| ! | GAGGTATCTGGTGGACCTTA+TGG | + | contig551end:21425-21444 | MsG0080048940.01.T01:CDS | 50.0% |
| ! | GGGTATTTTGCACATGTGGC+TGG | + | contig551end:22133-22152 | MsG0080048940.01.T01:CDS | 50.0% |
| ! | TCCTTTGTTGGCTACTACCG+GGG | + | contig551end:22078-22097 | MsG0080048940.01.T01:CDS | 50.0% |
| !! | CATGTGGCTGGTTTGATTGC+TGG | + | contig551end:22145-22164 | MsG0080048940.01.T01:CDS | 50.0% |
| GCCCCGGTAGTAGCCAACAA+AGG | - | contig551end:22082-22101 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| contig551end | gene | 21272 | 22720 | 21272 | ID=MsG0080048940.01;Name=MsG0080048940.01 |
| contig551end | mRNA | 21272 | 22720 | 21272 | ID=MsG0080048940.01.T01;Parent=MsG0080048940.01;Name=MsG0080048940.01.T01;_AED=0.49;_eAED=0.49;_QI=0|-1|0|1|-1|1|1|0|482 |
| contig551end | exon | 21272 | 22720 | 21272 | ID=MsG0080048940.01.T01:exon:23804;Parent=MsG0080048940.01.T01 |
| contig551end | CDS | 21272 | 22720 | 21272 | ID=MsG0080048940.01.T01:cds;Parent=MsG0080048940.01.T01 |
| Gene Sequence |
| Protein sequence |
