AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480018851.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480018851.01.T01 MTR_4g019210 96.848 571 7 3 1 570 1 561 0.0 1150
MsG0480018851.01.T01 MTR_4g125460 47.834 577 263 9 12 570 1 557 0.0 530
MsG0480018851.01.T01 MTR_5g081690 62.016 387 131 3 191 570 73 450 0.0 526
MsG0480018851.01.T01 MTR_4g125460 57.895 418 164 3 154 570 12 418 6.31e-180 516
MsG0480018851.01.T01 MTR_5g064620 51.762 369 164 5 206 570 85 443 4.97e-132 395
MsG0480018851.01.T01 MTR_3g099480 51.639 366 166 3 206 570 114 469 3.16e-130 392
MsG0480018851.01.T01 MTR_3g096020 49.091 385 182 4 187 570 147 518 3.44e-121 370
MsG0480018851.01.T01 MTR_5g042200 49.716 352 159 5 223 570 80 417 1.72e-116 355
MsG0480018851.01.T01 MTR_4g082310 50.729 343 155 4 232 570 97 429 4.99e-116 354
MsG0480018851.01.T01 MTR_6g016015 50.725 345 155 4 231 570 114 448 1.68e-114 350
MsG0480018851.01.T01 MTR_2g059350 50.000 344 151 5 231 566 114 444 1.83e-112 345
MsG0480018851.01.T01 MTR_4g110030 50.000 348 153 5 231 570 115 449 1.32e-111 343
MsG0480018851.01.T01 MTR_4g100810 43.467 375 190 8 203 569 76 436 3.94e-92 293
MsG0480018851.01.T01 MTR_3g115220 42.473 372 192 8 206 569 82 439 4.57e-90 289
MsG0480018851.01.T01 MTR_5g012770 43.085 376 179 10 203 569 92 441 7.79e-88 281
MsG0480018851.01.T01 MTR_5g099010 37.639 449 229 12 129 569 41 446 1.40e-84 275
MsG0480018851.01.T01 MTR_3g086570 40.278 360 185 7 230 570 148 496 5.46e-82 267
MsG0480018851.01.T01 MTR_4g084570 37.887 388 207 11 203 570 122 495 2.85e-76 252
MsG0480018851.01.T01 MTR_1g031590 37.887 388 207 12 203 570 121 494 5.86e-76 251
MsG0480018851.01.T01 MTR_3g005340 37.173 382 209 9 208 570 123 492 4.31e-73 244
MsG0480018851.01.T01 MTR_3g026650 36.483 381 221 7 199 570 135 503 2.28e-70 236
MsG0480018851.01.T01 MTR_1g102030 36.923 390 200 13 206 570 61 429 5.15e-67 226
MsG0480018851.01.T01 MTR_2g016470 34.729 406 206 12 204 561 157 551 1.78e-66 228
MsG0480018851.01.T01 MTR_5g032100 33.747 403 215 9 206 569 60 449 2.89e-65 221
MsG0480018851.01.T01 MTR_5g059260 37.535 357 192 10 233 570 158 502 2.95e-65 223
MsG0480018851.01.T01 MTR_3g100310 31.818 418 232 9 191 569 60 463 2.19e-64 219
MsG0480018851.01.T01 MTR_3g026650 35.890 365 213 7 199 554 135 487 2.24e-64 219
MsG0480018851.01.T01 MTR_4g023030 34.211 380 229 7 200 570 196 563 1.85e-60 211
MsG0480018851.01.T01 MTR_3g086570 38.095 294 153 6 230 505 148 430 3.78e-60 206
MsG0480018851.01.T01 MTR_4g010990 34.503 342 200 10 229 566 72 393 2.75e-52 185
MsG0480018851.01.T01 MTR_4g132590 31.961 413 223 10 206 570 38 440 4.09e-52 186
MsG0480018851.01.T01 MTR_4g132590 31.961 413 223 10 206 570 137 539 3.30e-51 185
MsG0480018851.01.T01 MTR_1g101990 39.056 233 127 6 345 570 1 225 2.15e-46 166
MsG0480018851.01.T01 MTR_4g010990 33.762 311 191 9 260 566 5 304 4.14e-46 166
MsG0480018851.01.T01 MTR_3g026650 35.018 277 160 6 199 467 135 399 2.73e-41 154
MsG0480018851.01.T01 MTR_7g064210 46.023 176 79 5 353 518 24 193 3.94e-38 145
MsG0480018851.01.T01 MTR_3g092590 32.686 309 171 10 231 517 89 382 4.41e-38 148
MsG0480018851.01.T01 MTR_3g092590 32.686 309 171 10 231 517 89 382 1.30e-37 147
MsG0480018851.01.T01 MTR_7g017330 28.990 307 187 8 230 517 96 390 1.06e-34 139
MsG0480018851.01.T01 MTR_1g007390 31.715 309 180 10 231 517 89 388 1.61e-32 132
MsG0480018851.01.T01 MTR_1g101985 45.536 112 49 3 206 315 61 162 8.65e-21 90.5
MsG0480018851.01.T01 MTR_4g008200 24.528 371 227 14 207 568 12 338 4.07e-18 86.7
MsG0480018851.01.T01 MTR_4g008200 24.528 371 227 14 207 568 63 389 4.45e-18 87.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480018851.01.T01 AT3G54100 68.862 501 118 8 82 570 77 551 0.0 701
MsG0480018851.01.T01 AT2G37980 69.979 483 115 6 95 570 96 555 0.0 690
MsG0480018851.01.T01 AT5G01100 54.255 564 229 9 17 570 1 545 0.0 581
MsG0480018851.01.T01 AT5G35570 63.014 365 125 2 207 570 225 580 4.86e-171 500
MsG0480018851.01.T01 AT1G22460 49.727 366 173 3 206 570 134 489 7.26e-121 368
MsG0480018851.01.T01 AT5G64600 47.619 378 186 4 195 570 79 446 3.26e-116 355
MsG0480018851.01.T01 AT1G14020 50.437 343 156 4 232 570 91 423 5.36e-116 353
MsG0480018851.01.T01 AT2G03280 49.563 343 159 4 232 570 88 420 2.69e-113 346
MsG0480018851.01.T01 AT5G15740 50.729 343 154 4 233 570 107 439 1.40e-112 345
MsG0480018851.01.T01 AT3G02250 49.855 345 158 4 231 570 105 439 1.16e-109 338
MsG0480018851.01.T01 AT2G03280 45.946 370 159 5 232 570 88 447 2.70e-107 332
MsG0480018851.01.T01 AT1G20550 40.701 371 199 8 206 569 80 436 1.51e-88 285
MsG0480018851.01.T01 AT1G76270 40.701 371 199 8 206 569 77 433 1.11e-87 282
MsG0480018851.01.T01 AT4G16650 42.386 394 200 11 188 569 72 450 5.26e-86 277
MsG0480018851.01.T01 AT4G16650 42.386 394 200 11 188 569 72 450 5.26e-86 277
MsG0480018851.01.T01 AT4G38390 39.683 378 195 9 206 569 94 452 7.80e-85 275
MsG0480018851.01.T01 AT3G26370 40.833 360 183 7 230 570 156 504 5.09e-84 272
MsG0480018851.01.T01 AT1G04910 38.583 381 198 11 206 570 61 421 5.85e-75 248
MsG0480018851.01.T01 AT1G14970 38.547 358 189 10 232 570 9 354 1.58e-74 243
MsG0480018851.01.T01 AT1G14970 38.547 358 189 10 232 570 35 380 4.18e-74 243
MsG0480018851.01.T01 AT1G38065 38.482 369 196 10 220 570 16 371 1.34e-73 242
MsG0480018851.01.T01 AT1G38065 38.719 359 191 9 230 570 34 381 1.61e-73 242
MsG0480018851.01.T01 AT2G01480 39.276 359 187 10 231 570 153 499 2.13e-73 244
MsG0480018851.01.T01 AT2G01480 39.276 359 187 10 231 570 153 499 5.46e-73 244
MsG0480018851.01.T01 AT1G35510 34.025 482 271 14 109 570 50 504 1.01e-72 243
MsG0480018851.01.T01 AT1G14970 38.547 358 189 10 232 570 155 500 1.11e-72 243
MsG0480018851.01.T01 AT1G38131 38.482 369 196 10 220 570 145 500 2.62e-72 242
MsG0480018851.01.T01 AT4G24530 34.491 403 212 9 206 569 75 464 2.67e-70 235
MsG0480018851.01.T01 AT5G65470 34.286 420 220 11 193 569 44 450 6.29e-67 226
MsG0480018851.01.T01 AT5G63390 35.829 374 220 7 206 570 133 495 1.27e-65 224
MsG0480018851.01.T01 AT3G07900 33.422 374 229 6 206 570 157 519 2.45e-62 216
MsG0480018851.01.T01 AT1G62330 32.857 420 221 10 201 570 189 597 9.09e-61 213
MsG0480018851.01.T01 AT2G44500 34.555 382 222 9 202 570 142 508 1.67e-60 210
MsG0480018851.01.T01 AT1G11990 34.783 391 222 11 201 570 158 536 3.85e-60 210
MsG0480018851.01.T01 AT1G29200 34.559 408 202 11 200 561 42 430 1.41e-57 201
MsG0480018851.01.T01 AT1G29200 34.559 408 202 11 200 561 42 430 1.41e-57 201
MsG0480018851.01.T01 AT1G29200 34.559 408 202 11 200 561 158 546 8.79e-57 201
MsG0480018851.01.T01 AT1G52630 34.706 340 200 9 229 566 71 390 1.23e-54 191
MsG0480018851.01.T01 AT1G11990 32.243 428 220 13 201 570 143 558 2.02e-54 194
MsG0480018851.01.T01 AT1G29200 34.771 371 181 9 237 561 1 356 1.58e-53 188
MsG0480018851.01.T01 AT1G52630 33.657 309 192 8 260 566 5 302 2.24e-47 169
MsG0480018851.01.T01 AT3G26370 38.596 228 119 4 230 447 156 372 7.52e-45 164
MsG0480018851.01.T01 AT3G03810 30.303 330 201 8 207 517 62 381 1.62e-40 156
MsG0480018851.01.T01 AT3G03810 30.303 330 201 8 207 517 62 381 1.62e-40 156
MsG0480018851.01.T01 AT2G44500 33.216 283 154 8 202 468 142 405 2.32e-35 138
MsG0480018851.01.T01 AT3G30300 29.967 307 186 9 229 517 97 392 3.68e-35 140
MsG0480018851.01.T01 AT3G30300 29.967 307 186 9 229 517 97 392 3.68e-35 140

Find 131 sgRNAs with CRISPR-Local

Find 246 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATTCGTTGCCCTTCATTTA+AGG 0.115357 4:-10589905 MsG0480018851.01.T01:intron
TTTGGCTTCATCCATATTTC+TGG 0.129450 4:+10591330 None:intergenic
CTCTTGACCATGATTCATTT+TGG 0.159771 4:-10590527 MsG0480018851.01.T01:CDS
ATGAAACTTCTATGCCTAAA+AGG 0.209386 4:-10592474 MsG0480018851.01.T01:CDS
GTGTTTGTTGAAGCTGTGGC+TGG 0.276622 4:+10592979 None:intergenic
TTGAATAGACTCCAGAAATA+TGG 0.288105 4:-10591341 MsG0480018851.01.T01:intron
TTTAAGGTATCGTTGTTTAT+TGG 0.297660 4:-10592616 MsG0480018851.01.T01:CDS
ATACTTAAGAGCTTGGTAAT+TGG 0.301558 4:+10589989 None:intergenic
CCTCCTCAATAGTAAGATTA+TGG 0.310871 4:+10589589 None:intergenic
TCAAAATCGTCTTGCTGCTT+TGG 0.315027 4:-10589289 MsG0480018851.01.T01:CDS
ATAGGAGGTTTGAAGGATTT+CGG 0.324466 4:-10589191 MsG0480018851.01.T01:CDS
TGATAATACTTGTCACTGTT+TGG 0.341054 4:+10591312 None:intergenic
TTGGAAAGACCTTGGTTGAT+AGG 0.354552 4:-10589947 MsG0480018851.01.T01:CDS
TGTTCTAGTTCGGAGAAATC+TGG 0.356116 4:+10592862 None:intergenic
CCGGTTCGGTTCAGTGGTTC+CGG 0.358275 4:-10592705 MsG0480018851.01.T01:CDS
GTTGTGGGACCCGCGACCCT+TGG 0.366847 4:+10592952 None:intergenic
TTAAAACAGCAAAGATCTTT+CGG 0.372303 4:+10592665 None:intergenic
AATTATGTTGGTTGTTATGT+CGG 0.377457 4:-10592644 MsG0480018851.01.T01:CDS
AAATTTAATAATGATGAAAC+AGG 0.377550 4:+10592826 None:intergenic
CACTTACAGCCAATCTTTCA+AGG 0.378099 4:+10592449 None:intergenic
TTGTCAAGGCCCCGGTTTCA+TGG 0.378191 4:-10590288 MsG0480018851.01.T01:CDS
AGTAAAGACATTAGGATATT+CGG 0.383366 4:+10589359 None:intergenic
AAGAGAAAGTAGCGCGTGAT+TGG 0.385220 4:+10592769 None:intergenic
CACACCTTTGACCATGAAAC+CGG 0.385577 4:+10590277 None:intergenic
TTGTGGGACCCGCGACCCTT+GGG 0.390526 4:+10592953 None:intergenic
TATCTATGGTGGCAATAGTA+TGG 0.405082 4:-10589394 MsG0480018851.01.T01:CDS
TATCTTCTTGTTCATGCAAA+TGG 0.406340 4:-10591158 MsG0480018851.01.T01:CDS
TGCAACGGTTTAAAGAAGAT+TGG 0.412961 4:-10592540 MsG0480018851.01.T01:CDS
TTGAGGAGGCCGAGGAACTT+AGG 0.413591 4:-10589575 MsG0480018851.01.T01:CDS
ACAACAATCTACATTGTTGC+AGG 0.413635 4:-10589420 MsG0480018851.01.T01:CDS
TCGGTTCAGTGGTTCCGGTC+TGG 0.414105 4:-10592700 MsG0480018851.01.T01:CDS
TCTTCTTACGTTGTCCGGTT+CGG 0.414387 4:-10592719 MsG0480018851.01.T01:CDS
GTCTTTGTTTATACTTATGA+TGG 0.414968 4:-10589240 MsG0480018851.01.T01:CDS
GTTGAATGAGTAAAGACATT+AGG 0.416040 4:+10589351 None:intergenic
GGATTGAATCAAATGAGAAC+AGG 0.423703 4:-10591134 MsG0480018851.01.T01:CDS
CCAAGGCTGTGCAAGGTCAT+AGG 0.426014 4:-10589209 MsG0480018851.01.T01:CDS
AGATGAAGCAAGACCATTGT+TGG 0.428664 4:+10590034 None:intergenic
CCGTCGTTCGCGATGTCGTC+GGG 0.430202 4:-10593006 MsG0480018851.01.T01:CDS
ATGTAGATTGTTGTAGTTGA+AGG 0.435871 4:+10589429 None:intergenic
TAAAAGGGTCCTTGAAAGAT+TGG 0.437754 4:-10592458 MsG0480018851.01.T01:CDS
AAACAAAGACATCACTTTCA+AGG 0.440814 4:+10589253 None:intergenic
GCAACGGTTTAAAGAAGATT+GGG 0.441885 4:-10592539 MsG0480018851.01.T01:CDS
TACTTACTCATTCGATTCCT+AGG 0.450269 4:+10591276 None:intergenic
GAAACCGGGGCCTTGACAAT+AGG 0.450769 4:+10590292 None:intergenic
ATACTATTGCCACCATAGAT+AGG 0.454363 4:+10589396 None:intergenic
AGATTGGGCTTCTGCTCAAA+GGG 0.458291 4:-10592524 MsG0480018851.01.T01:CDS
TGAGGAGGCCGAGGAACTTA+GGG 0.462201 4:-10589574 MsG0480018851.01.T01:CDS
AAGGTATCGTTGTTTATTGG+TGG 0.466303 4:-10592613 MsG0480018851.01.T01:CDS
ATTGTCTTGATGTTCTAGTT+CGG 0.468236 4:+10592852 None:intergenic
GCTGCTTCTCTTGGTGACAT+AGG 0.474180 4:+10589477 None:intergenic
CAAGGTCATAGGAGGTTTGA+AGG 0.474452 4:-10589198 MsG0480018851.01.T01:CDS
GGAAAACTATCAATCCTGAT+AGG 0.478760 4:-10589170 MsG0480018851.01.T01:CDS
CGTTGTCCGGTTCGGTTCAG+TGG 0.480911 4:-10592711 MsG0480018851.01.T01:CDS
TGAAACTTCTATGCCTAAAA+GGG 0.481140 4:-10592473 MsG0480018851.01.T01:CDS
ATTGTTGCAGGACCTATCTA+TGG 0.483319 4:-10589408 MsG0480018851.01.T01:CDS
ACCTTGTGTCTCTTCAACAT+TGG 0.487098 4:+10590089 None:intergenic
AGGTATAATACCTTAAATGA+AGG 0.487554 4:+10589895 None:intergenic
CCGGAACCACTGAACCGAAC+CGG 0.490350 4:+10592705 None:intergenic
ACCGTCGTTCGCGATGTCGT+CGG 0.491561 4:-10593007 MsG0480018851.01.T01:CDS
CTAGCTCCTCCTCAGTTGCA+AGG 0.495758 4:+10589328 None:intergenic
GTATCGTTGTTTATTGGTGG+TGG 0.495897 4:-10592610 MsG0480018851.01.T01:CDS
CTGCTTCTCTTGGTGACATA+GGG 0.496676 4:+10589478 None:intergenic
TGTTTGTTGAAGCTGTGGCT+GGG 0.499667 4:+10592980 None:intergenic
ATTAGGATATTCGGCGCGAA+AGG 0.502313 4:+10589368 None:intergenic
GTTCTAGTTCGGAGAAATCT+GGG 0.506113 4:+10592863 None:intergenic
ACAGTTGAGATTGAGGAGCT+TGG 0.508452 4:-10589966 MsG0480018851.01.T01:CDS
CTTCTTGTTCATGCAAATGG+TGG 0.508680 4:-10591155 MsG0480018851.01.T01:CDS
AACAAAGACATCACTTTCAA+GGG 0.513698 4:+10589254 None:intergenic
TAAGTATACAGTTGAGATTG+AGG 0.515481 4:-10589973 MsG0480018851.01.T01:CDS
TACACGTCTACGTGTTGTTG+TGG 0.517013 4:+10592936 None:intergenic
CCTATGACCTTGCACAGCCT+TGG 0.517231 4:+10589209 None:intergenic
TAACCATAATCTTACTATTG+AGG 0.518168 4:-10589592 MsG0480018851.01.T01:CDS
GATCAGTCCAAAATGAATCA+TGG 0.518495 4:+10590520 None:intergenic
AAGATTGGGCTTCTGCTCAA+AGG 0.521031 4:-10592525 MsG0480018851.01.T01:CDS
TAGGCTTCACAGATGCATAT+CGG 0.521504 4:+10590311 None:intergenic
AACACAAGCCCAAGGGTCGC+GGG 0.525728 4:-10592961 MsG0480018851.01.T01:CDS
AAACACAAGCCCAAGGGTCG+CGG 0.527381 4:-10592962 MsG0480018851.01.T01:CDS
AGCGTCGATCGACGATTGCA+AGG 0.527822 4:-10589507 MsG0480018851.01.T01:CDS
GCTTGTGTTTGTTGAAGCTG+TGG 0.527982 4:+10592975 None:intergenic
TGAGGTATGAAGTGAAGCAT+TGG 0.528719 4:-10589548 MsG0480018851.01.T01:CDS
CAACTGTATACTTAAGAGCT+TGG 0.532962 4:+10589982 None:intergenic
GGTGGTGGTGTTGAAATGAA+TGG 0.533134 4:-10592595 MsG0480018851.01.T01:CDS
TGAGGAGCTTGGAAAGACCT+TGG 0.533987 4:-10589955 MsG0480018851.01.T01:CDS
CCGAGGAACTTAGGGTTATG+AGG 0.535843 4:-10589566 MsG0480018851.01.T01:CDS
TTCACAGATGCATATCGGAC+AGG 0.546800 4:+10590316 None:intergenic
TAGCTCCTCCTCAGTTGCAA+GGG 0.557167 4:+10589329 None:intergenic
TCTTACTATTGAGGAGGCCG+AGG 0.557494 4:-10589583 MsG0480018851.01.T01:CDS
ACACCTTTGACCATGAAACC+GGG 0.558025 4:+10590278 None:intergenic
GAAGCCTATTGTCAAGGCCC+CGG 0.558923 4:-10590296 MsG0480018851.01.T01:CDS
CAGATATGAGAAAGACATGC+TGG 0.561490 4:-10589628 MsG0480018851.01.T01:CDS
TGTAGATTGTTGTAGTTGAA+GGG 0.566943 4:+10589430 None:intergenic
GTGGTGGTGTTGAAATGAAT+GGG 0.576107 4:-10592594 MsG0480018851.01.T01:CDS
CCTCATAACCCTAAGTTCCT+CGG 0.576259 4:+10589566 None:intergenic
GGTATAATACCTTAAATGAA+GGG 0.576439 4:+10589896 None:intergenic
TCATTCAACCCTTGCAACTG+AGG 0.579169 4:-10589337 MsG0480018851.01.T01:CDS
ACACGTCTACGTGTTGTTGT+GGG 0.581373 4:+10592937 None:intergenic
AATGAATCATGGTCAAGAGA+AGG 0.590058 4:+10590531 None:intergenic
ATCTGTGAAGCCTATTGTCA+AGG 0.591399 4:-10590302 MsG0480018851.01.T01:CDS
CTTAAATGAAGGGCAACGAA+TGG 0.592611 4:+10589906 None:intergenic
AACTATCAATCCTGATAGGT+AGG 0.593064 4:-10589166 None:intergenic
ATGAACAAGAAGATAGCCGT+TGG 0.601082 4:+10591166 None:intergenic
GAAAATGTTCTATGAAAATG+CGG 0.603087 4:+10592740 None:intergenic
AACATGGCCAAGGCTGTGCA+AGG 0.603758 4:-10589216 MsG0480018851.01.T01:CDS
TTATACTTATGATGGAAACA+TGG 0.605653 4:-10589232 MsG0480018851.01.T01:CDS
TTCAACCCTTGCAACTGAGG+AGG 0.605856 4:-10589334 MsG0480018851.01.T01:CDS
TGTAGTTGAAGGGTACCCCA+TGG 0.607210 4:+10589440 None:intergenic
CTTCAACAAACACAAGCCCA+AGG 0.611377 4:-10592969 MsG0480018851.01.T01:CDS
TCGTTCGCGATGTCGTCGGG+CGG 0.615590 4:-10593003 MsG0480018851.01.T01:CDS
AAAATGTTCTATGAAAATGC+GGG 0.616337 4:+10592741 None:intergenic
AGGCTGTGCAAGGTCATAGG+AGG 0.616507 4:-10589206 MsG0480018851.01.T01:CDS
CCCGACGACATCGCGAACGA+CGG 0.618085 4:+10593006 None:intergenic
ATCAATGTGTGTCACGACCT+AGG 0.621734 4:-10591293 MsG0480018851.01.T01:CDS
GGCCCCGGTTTCATGGTCAA+AGG 0.622906 4:-10590281 MsG0480018851.01.T01:intron
GATTCAAGACTTGCCAACAA+TGG 0.624892 4:-10590047 MsG0480018851.01.T01:CDS
GTATGAAGTGAAGCATTGGA+AGG 0.629151 4:-10589544 MsG0480018851.01.T01:CDS
TTATGATGGAAACATGGCCA+AGG 0.634796 4:-10589226 MsG0480018851.01.T01:CDS
AATCATGGTCAAGAGAAGGA+AGG 0.636340 4:+10590535 None:intergenic
TCCAATGTTGAAGAGACACA+AGG 0.642304 4:-10590090 MsG0480018851.01.T01:CDS
ACTTCTTAGCCTATCAACCA+AGG 0.650324 4:+10589938 None:intergenic
CCATAATCTTACTATTGAGG+AGG 0.658326 4:-10589589 MsG0480018851.01.T01:CDS
GATTGAATCAAATGAGAACA+GGG 0.659889 4:-10591133 MsG0480018851.01.T01:CDS
TTCAACAAACACAAGCCCAA+GGG 0.661291 4:-10592968 MsG0480018851.01.T01:CDS
GTTGCAGGACCTATCTATGG+TGG 0.662086 4:-10589405 MsG0480018851.01.T01:CDS
CACCTTTGACCATGAAACCG+GGG 0.666216 4:+10590279 None:intergenic
AAGAGAAGGAAGGACAAGTG+TGG 0.685590 4:+10590545 None:intergenic
GTCGATCGACGATTGCAAGG+AGG 0.693275 4:-10589504 MsG0480018851.01.T01:CDS
GATATGTGACATGGTAGCTG+TGG 0.697736 4:-10590583 MsG0480018851.01.T01:CDS
GATGATGAACATGCGCGTGG+TGG 0.720142 4:+10592800 None:intergenic
ATTGAATCAAATGAGAACAG+GGG 0.733541 4:-10591132 MsG0480018851.01.T01:intron
TGACATGCAGATATGTGACA+TGG 0.749290 4:-10590592 MsG0480018851.01.T01:CDS
AGTGATGATGAACATGCGCG+TGG 0.751509 4:+10592797 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAATAAAATAAAATA+AGG + Chr4:10591448-10591467 None:intergenic 0.0%
!! ATATATTATTATTCATATAG+TGG - Chr4:10591119-10591138 MsG0480018851.01.T01:intron 10.0%
!! GTAAAAAGAAATTTATTTAT+TGG + Chr4:10590232-10590251 None:intergenic 10.0%
!! TTATTATTAATATACTTACT+TGG - Chr4:10590093-10590112 MsG0480018851.01.T01:CDS 10.0%
!! AAATTTAATAATGATGAAAC+AGG + Chr4:10589386-10589405 None:intergenic 15.0%
!! ATAAGTCTAATATTTGAAAA+TGG - Chr4:10591243-10591262 MsG0480018851.01.T01:intron 15.0%
!! CAAATAGACAAAAAAAATTT+AGG - Chr4:10592492-10592511 MsG0480018851.01.T01:CDS 15.0%
!! TACAATGAAAGATTTATTAT+TGG - Chr4:10590175-10590194 MsG0480018851.01.T01:intron 15.0%
!!! AAAAAAATAAAAAGCACTTT+TGG + Chr4:10589817-10589836 None:intergenic 15.0%
!!! AAAAATTTAGGTATGTTTTA+TGG - Chr4:10592504-10592523 MsG0480018851.01.T01:CDS 15.0%
!!! TAACCTTTTATACTTTATAA+CGG + Chr4:10589906-10589925 None:intergenic 15.0%
!!! TATTGATTCGTTAAAAAATA+TGG - Chr4:10590264-10590283 MsG0480018851.01.T01:intron 15.0%
!!! TATTTTTTAACGAATCAATA+TGG + Chr4:10590264-10590283 None:intergenic 15.0%
!! AATTCCGATCTTTAAATATA+AGG - Chr4:10591211-10591230 MsG0480018851.01.T01:intron 20.0%
!! ATCACCTTATATTTAAAGAT+CGG + Chr4:10591218-10591237 None:intergenic 20.0%
!! ATTATTATTCATATAGTGGT+GGG - Chr4:10591123-10591142 MsG0480018851.01.T01:intron 20.0%
!! GTTAAAAAATATGGATATAG+AGG - Chr4:10590273-10590292 MsG0480018851.01.T01:intron 20.0%
!! TATATTAGTATATTACAGCA+TGG + Chr4:10590789-10590808 None:intergenic 20.0%
!! TATTATTATTCATATAGTGG+TGG - Chr4:10591122-10591141 MsG0480018851.01.T01:intron 20.0%
!! TGGTTAAAAGAAAAGTTAAT+TGG + Chr4:10590212-10590231 None:intergenic 20.0%
!! TTACCGTTATAAAGTATAAA+AGG - Chr4:10589900-10589919 MsG0480018851.01.T01:intron 20.0%
!!! AAGATTTATTATTGGTTAAG+AGG - Chr4:10590183-10590202 MsG0480018851.01.T01:intron 20.0%
!!! AATATTTTTTTGTTCTTGCT+AGG - Chr4:10590669-10590688 MsG0480018851.01.T01:intron 20.0%
!!! ACTTCAAAGATATTTTTGAT+TGG - Chr4:10591819-10591838 MsG0480018851.01.T01:intron 20.0%
!!! ATATTAGGGACATTATATTT+TGG + Chr4:10591790-10591809 None:intergenic 20.0%
!!! ATTAAATTTTTACGTGTGAT+TGG - Chr4:10589980-10589999 MsG0480018851.01.T01:CDS 20.0%
!!! GACATTATATTTTGGAAAAT+TGG + Chr4:10591782-10591801 None:intergenic 20.0%
! AAAATGTTCTATGAAAATGC+GGG + Chr4:10589471-10589490 None:intergenic 25.0%
! AAGGAAAACCAAATATTAGT+TGG + Chr4:10591429-10591448 None:intergenic 25.0%
! AAGGAATCAAAATCAAAGTT+TGG + Chr4:10590618-10590637 None:intergenic 25.0%
! AATATGAGTGAAATTTACCT+TGG + Chr4:10591714-10591733 None:intergenic 25.0%
! AGGAAAACCAAATATTAGTT+GGG + Chr4:10591428-10591447 None:intergenic 25.0%
! AGGTATAATACCTTAAATGA+AGG + Chr4:10592317-10592336 None:intergenic 25.0%
! AGTAAAGACATTAGGATATT+CGG + Chr4:10592853-10592872 None:intergenic 25.0%
! ATCAAAACCCAACTAATATT+TGG - Chr4:10591418-10591437 MsG0480018851.01.T01:intron 25.0%
! ATTCCTTACATATAACAAGT+CGG - Chr4:10590631-10590650 MsG0480018851.01.T01:intron 25.0%
! CAATACTTATCCATGTAATA+GGG + Chr4:10590816-10590835 None:intergenic 25.0%
! GAAAATGTTCTATGAAAATG+CGG + Chr4:10589472-10589491 None:intergenic 25.0%
! GAAGTCACTGAAATATATTA+GGG + Chr4:10591804-10591823 None:intergenic 25.0%
! GGTATAATACCTTAAATGAA+GGG + Chr4:10592316-10592335 None:intergenic 25.0%
! TAACCATAATCTTACTATTG+AGG - Chr4:10592617-10592636 MsG0480018851.01.T01:CDS 25.0%
! TACCTAACAGTAACTAAAAT+AGG + Chr4:10591986-10592005 None:intergenic 25.0%
! TATGATGAAAATTGTCTTTG+AGG - Chr4:10589956-10589975 MsG0480018851.01.T01:CDS 25.0%
! TCAATACTTATCCATGTAAT+AGG + Chr4:10590817-10590836 None:intergenic 25.0%
! TCTCCTAAAAATTCTCTTTA+GGG - Chr4:10589843-10589862 MsG0480018851.01.T01:intron 25.0%
! TGAAGTCACTGAAATATATT+AGG + Chr4:10591805-10591824 None:intergenic 25.0%
! TTAAAACAGCAAAGATCTTT+CGG + Chr4:10589547-10589566 None:intergenic 25.0%
! TTATTATTCATATAGTGGTG+GGG - Chr4:10591124-10591143 MsG0480018851.01.T01:intron 25.0%
!! AAACATATCTTTGAGTTATG+AGG + Chr4:10592337-10592356 None:intergenic 25.0%
!! AATTATGTTGGTTGTTATGT+CGG - Chr4:10589565-10589584 MsG0480018851.01.T01:CDS 25.0%
!! ATTCCCTAAAGAGAATTTTT+AGG + Chr4:10589849-10589868 None:intergenic 25.0%
!! ATTTAGATACTTCATTTTGC+AGG - Chr4:10592071-10592090 MsG0480018851.01.T01:intron 25.0%
!! GTCTTTGTTTATACTTATGA+TGG - Chr4:10592969-10592988 MsG0480018851.01.T01:CDS 25.0%
!! TAAGGAAATTTGCTTACTTT+AGG - Chr4:10592537-10592556 MsG0480018851.01.T01:CDS 25.0%
!! TTATACTTATGATGGAAACA+TGG - Chr4:10592977-10592996 MsG0480018851.01.T01:CDS 25.0%
!! TTGGCTTAATTTTCATACTT+TGG + Chr4:10590337-10590356 None:intergenic 25.0%
!! TTTTTGAACTGAAACTAATC+AGG - Chr4:10591463-10591482 MsG0480018851.01.T01:intron 25.0%
!!! CTTTGCTGTTTTAATTATGT+TGG - Chr4:10589553-10589572 MsG0480018851.01.T01:CDS 25.0%
!!! GGGAAAAAAAGTATTGAAAA+TGG - Chr4:10589635-10589654 MsG0480018851.01.T01:intron 25.0%
!!! TACCTATTTTAGTTACTGTT+AGG - Chr4:10591981-10592000 MsG0480018851.01.T01:intron 25.0%
!!! TCAAAGATATTTTTGATTGG+AGG - Chr4:10591822-10591841 MsG0480018851.01.T01:intron 25.0%
!!! TGTTATGTCGGTTTTTTTTA+AGG - Chr4:10589577-10589596 MsG0480018851.01.T01:CDS 25.0%
!!! TTTAAGGTATCGTTGTTTAT+TGG - Chr4:10589593-10589612 MsG0480018851.01.T01:CDS 25.0%
AAACAAAGACATCACTTTCA+AGG + Chr4:10592959-10592978 None:intergenic 30.0%
AACAAAGACATCACTTTCAA+GGG + Chr4:10592958-10592977 None:intergenic 30.0%
AATATAGCAACCCTATTACA+TGG - Chr4:10590803-10590822 MsG0480018851.01.T01:intron 30.0%
AATGTCTCTCATTGTTAGAA+AGG - Chr4:10591161-10591180 MsG0480018851.01.T01:CDS 30.0%
ATGAAACTTCTATGCCTAAA+AGG - Chr4:10589735-10589754 MsG0480018851.01.T01:intron 30.0%
ATGTAGATTGTTGTAGTTGA+AGG + Chr4:10592783-10592802 None:intergenic 30.0%
ATGTCTCTCATTGTTAGAAA+GGG - Chr4:10591162-10591181 MsG0480018851.01.T01:CDS 30.0%
ATTGAATCAAATGAGAACAG+GGG - Chr4:10591077-10591096 MsG0480018851.01.T01:intron 30.0%
CGACATAAAACAAGGATAAT+AGG - Chr4:10590465-10590484 MsG0480018851.01.T01:intron 30.0%
CTTTCTCATATCTGCATTAT+AGG + Chr4:10592575-10592594 None:intergenic 30.0%
GATTGAATCAAATGAGAACA+GGG - Chr4:10591076-10591095 MsG0480018851.01.T01:intron 30.0%
GTCTCCTAAAAATTCTCTTT+AGG - Chr4:10589842-10589861 MsG0480018851.01.T01:intron 30.0%
GTTGAATGAGTAAAGACATT+AGG + Chr4:10592861-10592880 None:intergenic 30.0%
TAAGTATACAGTTGAGATTG+AGG - Chr4:10592236-10592255 MsG0480018851.01.T01:intron 30.0%
TATCTTCTTGTTCATGCAAA+TGG - Chr4:10591051-10591070 MsG0480018851.01.T01:intron 30.0%
TGAAAATTCCACTTATTCGA+TGG + Chr4:10590586-10590605 None:intergenic 30.0%
TGAAACTTCTATGCCTAAAA+GGG - Chr4:10589736-10589755 MsG0480018851.01.T01:intron 30.0%
TGAGTAAGTACAATTGTACT+TGG - Chr4:10590946-10590965 MsG0480018851.01.T01:intron 30.0%
TGATAATACTTGTCACTGTT+TGG + Chr4:10590900-10590919 None:intergenic 30.0%
TGTAGATTGTTGTAGTTGAA+GGG + Chr4:10592782-10592801 None:intergenic 30.0%
TTACAACAAAACTCTAGTCA+TGG + Chr4:10590543-10590562 None:intergenic 30.0%
TTGAATAGACTCCAGAAATA+TGG - Chr4:10590868-10590887 MsG0480018851.01.T01:intron 30.0%
! ATACTTAAGAGCTTGGTAAT+TGG + Chr4:10592223-10592242 None:intergenic 30.0%
! ATTGTCTTGATGTTCTAGTT+CGG + Chr4:10589360-10589379 None:intergenic 30.0%
! GAAGTATTTGACATGGTTTA+AGG - Chr4:10590370-10590389 MsG0480018851.01.T01:CDS 30.0%
! TATTTGACATGGTTTAAGGT+TGG - Chr4:10590374-10590393 MsG0480018851.01.T01:CDS 30.0%
! TTTGGAAAATTGGTAACATG+AGG + Chr4:10591772-10591791 None:intergenic 30.0%
! TTTTATGGTCAATCACACTA+AGG - Chr4:10592519-10592538 MsG0480018851.01.T01:CDS 30.0%
!! ATGGACAATTGATTTTGCAA+CGG - Chr4:10589654-10589673 MsG0480018851.01.T01:intron 30.0%
!! GAGAGACATTTTTAAAAGAG+TGG + Chr4:10591151-10591170 None:intergenic 30.0%
!! TGATGTAGAAGTATTTGACA+TGG - Chr4:10590363-10590382 MsG0480018851.01.T01:CDS 30.0%
!!! ATTTTTTTGTTCTTGCTAGG+TGG - Chr4:10590672-10590691 MsG0480018851.01.T01:intron 30.0%
!!! GAGTTTTGTTGTAACTTGTA+AGG - Chr4:10590549-10590568 MsG0480018851.01.T01:CDS 30.0%
!!! TTACTTGGTTTTCTGAGATA+AGG - Chr4:10590108-10590127 MsG0480018851.01.T01:CDS 30.0%
AACCGAGAAAATCAAACAGA+CGG + Chr4:10592028-10592047 None:intergenic 35.0%
AACGTCACAGATCATATTAG+TGG + Chr4:10591336-10591355 None:intergenic 35.0%
AATGAATCATGGTCAAGAGA+AGG + Chr4:10591681-10591700 None:intergenic 35.0%
AATGCAATGTCCATTATCGT+TGG + Chr4:10591278-10591297 None:intergenic 35.0%
ACAACAATCTACATTGTTGC+AGG - Chr4:10592789-10592808 MsG0480018851.01.T01:CDS 35.0%
AGGAAATGCAAAGTAGTGTT+AGG + Chr4:10590705-10590724 None:intergenic 35.0%
AGTAGTTAAGTAGAAGTTCG+CGG + Chr4:10591519-10591538 None:intergenic 35.0%
AGTCATGGTTACAGCAAAAA+GGG + Chr4:10590528-10590547 None:intergenic 35.0%
ATACTATTGCCACCATAGAT+AGG + Chr4:10592816-10592835 None:intergenic 35.0%
ATAGGAGGTTTGAAGGATTT+CGG - Chr4:10593018-10593037 MsG0480018851.01.T01:CDS 35.0%
CAACTGTATACTTAAGAGCT+TGG + Chr4:10592230-10592249 None:intergenic 35.0%
CCATAATCTTACTATTGAGG+AGG - Chr4:10592620-10592639 MsG0480018851.01.T01:CDS 35.0%
CCTCCTCAATAGTAAGATTA+TGG + Chr4:10592623-10592642 None:intergenic 35.0%
CTCGAAACAGATCATGTATT+CGG - Chr4:10592374-10592393 MsG0480018851.01.T01:intron 35.0%
GATCAGTCCAAAATGAATCA+TGG + Chr4:10591692-10591711 None:intergenic 35.0%
GCAACGGTTTAAAGAAGATT+GGG - Chr4:10589670-10589689 MsG0480018851.01.T01:intron 35.0%
GGAAAACTATCAATCCTGAT+AGG - Chr4:10593039-10593058 MsG0480018851.01.T01:CDS 35.0%
GGAAATGCAAAGTAGTGTTA+GGG + Chr4:10590704-10590723 None:intergenic 35.0%
GGATTGAATCAAATGAGAAC+AGG - Chr4:10591075-10591094 MsG0480018851.01.T01:intron 35.0%
TAAAAGGGTCCTTGAAAGAT+TGG - Chr4:10589751-10589770 MsG0480018851.01.T01:intron 35.0%
TACTTACTCATTCGATTCCT+AGG + Chr4:10590936-10590955 None:intergenic 35.0%
TAGTCATGGTTACAGCAAAA+AGG + Chr4:10590529-10590548 None:intergenic 35.0%
TATCTATGGTGGCAATAGTA+TGG - Chr4:10592815-10592834 MsG0480018851.01.T01:CDS 35.0%
TGCAACGGTTTAAAGAAGAT+TGG - Chr4:10589669-10589688 MsG0480018851.01.T01:intron 35.0%
TTTGTCTCACTTGTGTTTCT+TGG - Chr4:10590998-10591017 MsG0480018851.01.T01:intron 35.0%
! AATCTTTCAAGGACCCTTTT+AGG + Chr4:10589752-10589771 None:intergenic 35.0%
! ATTCATTTTGGACTGATCCA+AGG - Chr4:10591694-10591713 MsG0480018851.01.T01:intron 35.0%
! CATTTTCTTCTTACGTTGTC+CGG - Chr4:10589485-10589504 MsG0480018851.01.T01:CDS 35.0%
! CTCTTGACCATGATTCATTT+TGG - Chr4:10591682-10591701 MsG0480018851.01.T01:intron 35.0%
! GTTTGAAACTCCAACGATAA+TGG - Chr4:10591265-10591284 MsG0480018851.01.T01:intron 35.0%
! TTCAACTTTTCTTTCATCGC+TGG - Chr4:10590038-10590057 MsG0480018851.01.T01:CDS 35.0%
! TTTGGCTTCATCCATATTTC+TGG + Chr4:10590882-10590901 None:intergenic 35.0%
!! AAGGTATCGTTGTTTATTGG+TGG - Chr4:10589596-10589615 MsG0480018851.01.T01:CDS 35.0%
!! AGTTGGTTCGACATAAAACA+AGG - Chr4:10590457-10590476 MsG0480018851.01.T01:intron 35.0%
!! CTACCGACTTGTTATATGTA+AGG + Chr4:10590637-10590656 None:intergenic 35.0%
AAACATGACTCGATTGGAGT+TGG - Chr4:10590440-10590459 MsG0480018851.01.T01:intron 40.0%
AATCATGGTCAAGAGAAGGA+AGG + Chr4:10591677-10591696 None:intergenic 40.0%
ACCTTGTGTCTCTTCAACAT+TGG + Chr4:10592123-10592142 None:intergenic 40.0%
ACTTCTTAGCCTATCAACCA+AGG + Chr4:10592274-10592293 None:intergenic 40.0%
AGAAAAATGGCTGCTTCTCT+TGG + Chr4:10592744-10592763 None:intergenic 40.0%
AGATGAAGCAAGACCATTGT+TGG + Chr4:10592178-10592197 None:intergenic 40.0%
ATCTGTGAAGCCTATTGTCA+AGG - Chr4:10591907-10591926 MsG0480018851.01.T01:intron 40.0%
ATGAACAAGAAGATAGCCGT+TGG + Chr4:10591046-10591065 None:intergenic 40.0%
ATTGTTGCAGGACCTATCTA+TGG - Chr4:10592801-10592820 MsG0480018851.01.T01:CDS 40.0%
CAACTGAAACATGACTCGAT+TGG - Chr4:10590434-10590453 MsG0480018851.01.T01:intron 40.0%
CACTTACAGCCAATCTTTCA+AGG + Chr4:10589763-10589782 None:intergenic 40.0%
CAGATATGAGAAAGACATGC+TGG - Chr4:10592581-10592600 MsG0480018851.01.T01:CDS 40.0%
CATTCGTTGCCCTTCATTTA+AGG - Chr4:10592304-10592323 MsG0480018851.01.T01:intron 40.0%
CGCGTGAGAAAATCACAAAA+AGG + Chr4:10590725-10590744 None:intergenic 40.0%
CTTAAATGAAGGGCAACGAA+TGG + Chr4:10592306-10592325 None:intergenic 40.0%
CTTCTTGTTCATGCAAATGG+TGG - Chr4:10591054-10591073 MsG0480018851.01.T01:intron 40.0%
GATTCAAGACTTGCCAACAA+TGG - Chr4:10592162-10592181 MsG0480018851.01.T01:intron 40.0%
GTATCGTTGTTTATTGGTGG+TGG - Chr4:10589599-10589618 MsG0480018851.01.T01:CDS 40.0%
TACTTCTACATCACGCACTT+TGG + Chr4:10590356-10590375 None:intergenic 40.0%
TAGGCTTCACAGATGCATAT+CGG + Chr4:10591901-10591920 None:intergenic 40.0%
TCAGAACCGTCAAAAACCAA+CGG - Chr4:10591027-10591046 MsG0480018851.01.T01:intron 40.0%
TCCAATGTTGAAGAGACACA+AGG - Chr4:10592119-10592138 MsG0480018851.01.T01:intron 40.0%
TCTCGTCTTTACGTTTGAGA+TGG + Chr4:10591492-10591511 None:intergenic 40.0%
TGACATGCAGATATGTGACA+TGG - Chr4:10591617-10591636 MsG0480018851.01.T01:intron 40.0%
TGAGGTATGAAGTGAAGCAT+TGG - Chr4:10592661-10592680 MsG0480018851.01.T01:CDS 40.0%
TGATGTCTCCATCGAATAAG+TGG - Chr4:10590575-10590594 MsG0480018851.01.T01:CDS 40.0%
TTCAACAAACACAAGCCCAA+GGG - Chr4:10589241-10589260 MsG0480018851.01.T01:CDS 40.0%
TTGGAAAGACCTTGGTTGAT+AGG - Chr4:10592262-10592281 MsG0480018851.01.T01:intron 40.0%
! AGATAAGGAGGTCACGTTTT+TGG - Chr4:10590123-10590142 MsG0480018851.01.T01:intron 40.0%
! GTGGTGGTGTTGAAATGAAT+GGG - Chr4:10589615-10589634 MsG0480018851.01.T01:CDS 40.0%
! TCAAAATCGTCTTGCTGCTT+TGG - Chr4:10592920-10592939 MsG0480018851.01.T01:CDS 40.0%
! TTATGATGGAAACATGGCCA+AGG - Chr4:10592983-10593002 MsG0480018851.01.T01:CDS 40.0%
!! CGATTTTGATACGGCTTGAA+AGG + Chr4:10592909-10592928 None:intergenic 40.0%
!! GCAGCAAGACGATTTTGATA+CGG + Chr4:10592918-10592937 None:intergenic 40.0%
!! GTATGAAGTGAAGCATTGGA+AGG - Chr4:10592665-10592684 MsG0480018851.01.T01:CDS 40.0%
!! GTCCGTCTGTTTGATTTTCT+CGG - Chr4:10592023-10592042 MsG0480018851.01.T01:intron 40.0%
!! GTTCTAGTTCGGAGAAATCT+GGG + Chr4:10589349-10589368 None:intergenic 40.0%
!! TGTTCTAGTTCGGAGAAATC+TGG + Chr4:10589350-10589369 None:intergenic 40.0%
!!! AAAGACATGCTGGCTTTTAC+TGG - Chr4:10592591-10592610 MsG0480018851.01.T01:CDS 40.0%
!!! AGAAGCAGCCATTTTTCTCA+AGG - Chr4:10592746-10592765 MsG0480018851.01.T01:CDS 40.0%
!!! AGATAGCCGTTGGTTTTTGA+CGG + Chr4:10591036-10591055 None:intergenic 40.0%
!!! CGTTTTTGGTGCATCGAATT+TGG - Chr4:10590137-10590156 MsG0480018851.01.T01:intron 40.0%
!!! CTTGGTTTTCTGAGATAAGG+AGG - Chr4:10590111-10590130 MsG0480018851.01.T01:CDS 40.0%
AAGAGAAAGTAGCGCGTGAT+TGG + Chr4:10589443-10589462 None:intergenic 45.0%
AAGAGAAGGAAGGACAAGTG+TGG + Chr4:10591667-10591686 None:intergenic 45.0%
AAGATTGGGCTTCTGCTCAA+AGG - Chr4:10589684-10589703 MsG0480018851.01.T01:intron 45.0%
ACACCTTTGACCATGAAACC+GGG + Chr4:10591934-10591953 None:intergenic 45.0%
ACAGTTGAGATTGAGGAGCT+TGG - Chr4:10592243-10592262 MsG0480018851.01.T01:intron 45.0%
AGATTGGGCTTCTGCTCAAA+GGG - Chr4:10589685-10589704 MsG0480018851.01.T01:intron 45.0%
ATCAATGTGTGTCACGACCT+AGG - Chr4:10590916-10590935 MsG0480018851.01.T01:intron 45.0%
ATTAGGATATTCGGCGCGAA+AGG + Chr4:10592844-10592863 None:intergenic 45.0%
CAAGGTCATAGGAGGTTTGA+AGG - Chr4:10593011-10593030 MsG0480018851.01.T01:CDS 45.0%
CACACCTTTGACCATGAAAC+CGG + Chr4:10591935-10591954 None:intergenic 45.0%
CCTCATAACCCTAAGTTCCT+CGG + Chr4:10592646-10592665 None:intergenic 45.0%
CTTCAACAAACACAAGCCCA+AGG - Chr4:10589240-10589259 MsG0480018851.01.T01:CDS 45.0%
GATATGTGACATGGTAGCTG+TGG - Chr4:10591626-10591645 MsG0480018851.01.T01:intron 45.0%
GCCACTAATATGATCTGCGA+CGG - Chr4:10591361-10591380 MsG0480018851.01.T01:intron 45.0%
TCATTCAACCCTTGCAACTG+AGG - Chr4:10592872-10592891 MsG0480018851.01.T01:CDS 45.0%
TCTTCTTACGTTGTCCGGTT+CGG - Chr4:10589490-10589509 MsG0480018851.01.T01:CDS 45.0%
TTCACAGATGCATATCGGAC+AGG + Chr4:10591896-10591915 None:intergenic 45.0%
TTCCGGTCTGGAAAAAACGT+GGG - Chr4:10589521-10589540 MsG0480018851.01.T01:CDS 45.0%
! ACACGTCTACGTGTTGTTGT+GGG + Chr4:10589275-10589294 None:intergenic 45.0%
! CTGCTTCTCTTGGTGACATA+GGG + Chr4:10592734-10592753 None:intergenic 45.0%
! GCTTGTGTTTGTTGAAGCTG+TGG + Chr4:10589237-10589256 None:intergenic 45.0%
! GGTGGTGGTGTTGAAATGAA+TGG - Chr4:10589614-10589633 MsG0480018851.01.T01:CDS 45.0%
! TACACGTCTACGTGTTGTTG+TGG + Chr4:10589276-10589295 None:intergenic 45.0%
! TGTTTGTTGAAGCTGTGGCT+GGG + Chr4:10589232-10589251 None:intergenic 45.0%
!! CCATTTTTCTCAAGGCCATG+GGG - Chr4:10592754-10592773 MsG0480018851.01.T01:CDS 45.0%
!!! AGCCATTTTTCTCAAGGCCA+TGG - Chr4:10592752-10592771 MsG0480018851.01.T01:CDS 45.0%
!!! GCCATTTTTCTCAAGGCCAT+GGG - Chr4:10592753-10592772 MsG0480018851.01.T01:CDS 45.0%
!!! AAAATTTAATTTTGATAAAT+TGG + Chr4:10590401-10590420 None:intergenic 5.0%
!!! TTTTGAATTATATTAAATTT+TGG - Chr4:10590004-10590023 MsG0480018851.01.T01:CDS 5.0%
CACCTTTGACCATGAAACCG+GGG + Chr4:10591933-10591952 None:intergenic 50.0%
CCGAGGAACTTAGGGTTATG+AGG - Chr4:10592643-10592662 MsG0480018851.01.T01:CDS 50.0%
CGGTTTCATGGTCAAAGGTG+TGG - Chr4:10591933-10591952 MsG0480018851.01.T01:intron 50.0%
GCCGTCGCAGATCATATTAG+TGG + Chr4:10591365-10591384 None:intergenic 50.0%
GTTCCGGTCTGGAAAAAACG+TGG - Chr4:10589520-10589539 MsG0480018851.01.T01:CDS 50.0%
GTTGCAGGACCTATCTATGG+TGG - Chr4:10592804-10592823 MsG0480018851.01.T01:CDS 50.0%
TAGCTCCTCCTCAGTTGCAA+GGG + Chr4:10592883-10592902 None:intergenic 50.0%
TCTTACTATTGAGGAGGCCG+AGG - Chr4:10592626-10592645 MsG0480018851.01.T01:CDS 50.0%
TGAGGAGCTTGGAAAGACCT+TGG - Chr4:10592254-10592273 MsG0480018851.01.T01:intron 50.0%
TTCAACCCTTGCAACTGAGG+AGG - Chr4:10592875-10592894 MsG0480018851.01.T01:CDS 50.0%
! AGTGATGATGAACATGCGCG+TGG + Chr4:10589415-10589434 None:intergenic 50.0%
! CCCCATGGCCTTGAGAAAAA+TGG + Chr4:10592757-10592776 None:intergenic 50.0%
! GCTGCTTCTCTTGGTGACAT+AGG + Chr4:10592735-10592754 None:intergenic 50.0%
! GTGTTTGTTGAAGCTGTGGC+TGG + Chr4:10589233-10589252 None:intergenic 50.0%
!! TGTAGTTGAAGGGTACCCCA+TGG + Chr4:10592772-10592791 None:intergenic 50.0%
AAACACAAGCCCAAGGGTCG+CGG - Chr4:10589247-10589266 MsG0480018851.01.T01:CDS 55.0%
AACATGGCCAAGGCTGTGCA+AGG - Chr4:10592993-10593012 MsG0480018851.01.T01:CDS 55.0%
AGGCTGTGCAAGGTCATAGG+AGG - Chr4:10593003-10593022 MsG0480018851.01.T01:CDS 55.0%
CCAAGGCTGTGCAAGGTCAT+AGG - Chr4:10593000-10593019 MsG0480018851.01.T01:CDS 55.0%
CCTATGACCTTGCACAGCCT+TGG + Chr4:10593003-10593022 None:intergenic 55.0%
CTAGCTCCTCCTCAGTTGCA+AGG + Chr4:10592884-10592903 None:intergenic 55.0%
GAAACCGGGGCCTTGACAAT+AGG + Chr4:10591920-10591939 None:intergenic 55.0%
GAAGCCTATTGTCAAGGCCC+CGG - Chr4:10591913-10591932 MsG0480018851.01.T01:intron 55.0%
GATGATGAACATGCGCGTGG+TGG + Chr4:10589412-10589431 None:intergenic 55.0%
GTCGATCGACGATTGCAAGG+AGG - Chr4:10592705-10592724 MsG0480018851.01.T01:CDS 55.0%
TGAGGAGGCCGAGGAACTTA+GGG - Chr4:10592635-10592654 MsG0480018851.01.T01:CDS 55.0%
TTGAGGAGGCCGAGGAACTT+AGG - Chr4:10592634-10592653 MsG0480018851.01.T01:CDS 55.0%
TTGTCAAGGCCCCGGTTTCA+TGG - Chr4:10591921-10591940 MsG0480018851.01.T01:intron 55.0%
!! AGCGTCGATCGACGATTGCA+AGG - Chr4:10592702-10592721 MsG0480018851.01.T01:CDS 55.0%
!!! GGCCCACGTTTTTTCCAGAC+CGG + Chr4:10589526-10589545 None:intergenic 55.0%
AACACAAGCCCAAGGGTCGC+GGG - Chr4:10589248-10589267 MsG0480018851.01.T01:CDS 60.0%
ACCGTCGTTCGCGATGTCGT+CGG - Chr4:10589202-10589221 MsG0480018851.01.T01:CDS 60.0%
CCGGAACCACTGAACCGAAC+CGG + Chr4:10589507-10589526 None:intergenic 60.0%
GGCCCCGGTTTCATGGTCAA+AGG - Chr4:10591928-10591947 MsG0480018851.01.T01:intron 60.0%
TCGGTTCAGTGGTTCCGGTC+TGG - Chr4:10589509-10589528 MsG0480018851.01.T01:CDS 60.0%
!! CCGGTTCGGTTCAGTGGTTC+CGG - Chr4:10589504-10589523 MsG0480018851.01.T01:CDS 60.0%
!! CGTTGTCCGGTTCGGTTCAG+TGG - Chr4:10589498-10589517 MsG0480018851.01.T01:CDS 60.0%
CCCGACGACATCGCGAACGA+CGG + Chr4:10589206-10589225 None:intergenic 65.0%
CCGTCGTTCGCGATGTCGTC+GGG - Chr4:10589203-10589222 MsG0480018851.01.T01:CDS 65.0%
TCGTTCGCGATGTCGTCGGG+CGG - Chr4:10589206-10589225 MsG0480018851.01.T01:CDS 65.0%
TTGTGGGACCCGCGACCCTT+GGG + Chr4:10589259-10589278 None:intergenic 65.0%
GTTGTGGGACCCGCGACCCT+TGG + Chr4:10589260-10589279 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
Chr4 gene 10589167 10593064 10589167 ID=MsG0480018851.01;Name=MsG0480018851.01
Chr4 mRNA 10589167 10593064 10589167 ID=MsG0480018851.01.T01;Parent=MsG0480018851.01;Name=MsG0480018851.01.T01;_AED=0.33;_eAED=0.34;_QI=0|0|0|1|1|1|7|0|570
Chr4 exon 10592456 10593064 10592456 ID=MsG0480018851.01.T01:exon:3070;Parent=MsG0480018851.01.T01
Chr4 exon 10591283 10591355 10591283 ID=MsG0480018851.01.T01:exon:3069;Parent=MsG0480018851.01.T01
Chr4 exon 10591133 10591200 10591133 ID=MsG0480018851.01.T01:exon:3068;Parent=MsG0480018851.01.T01
Chr4 exon 10590516 10590631 10590516 ID=MsG0480018851.01.T01:exon:3067;Parent=MsG0480018851.01.T01
Chr4 exon 10590282 10590414 10590282 ID=MsG0480018851.01.T01:exon:3066;Parent=MsG0480018851.01.T01
Chr4 exon 10589906 10590138 10589906 ID=MsG0480018851.01.T01:exon:3065;Parent=MsG0480018851.01.T01
Chr4 exon 10589167 10589647 10589167 ID=MsG0480018851.01.T01:exon:3064;Parent=MsG0480018851.01.T01
Chr4 CDS 10592456 10593064 10592456 ID=MsG0480018851.01.T01:cds;Parent=MsG0480018851.01.T01
Chr4 CDS 10591283 10591355 10591283 ID=MsG0480018851.01.T01:cds;Parent=MsG0480018851.01.T01
Chr4 CDS 10591133 10591200 10591133 ID=MsG0480018851.01.T01:cds;Parent=MsG0480018851.01.T01
Chr4 CDS 10590516 10590631 10590516 ID=MsG0480018851.01.T01:cds;Parent=MsG0480018851.01.T01
Chr4 CDS 10590282 10590414 10590282 ID=MsG0480018851.01.T01:cds;Parent=MsG0480018851.01.T01
Chr4 CDS 10589906 10590138 10589906 ID=MsG0480018851.01.T01:cds;Parent=MsG0480018851.01.T01
Chr4 CDS 10589167 10589647 10589167 ID=MsG0480018851.01.T01:cds;Parent=MsG0480018851.01.T01
Gene Sequence

>MsG0480018851.01.T01

ATGCGATTATTCATAGTTCGTAAATTTAGCATAATACCGTCGTTCGCGATGTCGTCGGGCGGCCCAGCCACAGCTTCAACAAACACAAGCCCAAGGGTCGCGGGTCCCACAACAACACGTAGACGTGTAGCAGACAACAACGTTAACAATGATACAGAAAAACAACAGCAACAAGCTTTCCCAGATTTCTCCGAACTAGAACATCAAGACAATGATCCTGTTTCATCATTATTAAATTTAAACCACCACGCGCATGTTCATCATCACTTACATCCAATCACGCGCTACTTTCTCTTACGCGCCCGCATTTTCATAGAACATTTTCTTCTTACGTTGTCCGGTTCGGTTCAGTGGTTCCGGTCTGGAAAAAACGTGGGCCGAAAGATCTTTGCTGTTTTAATTATGTTGGTTGTTATGTCGGTTTTTTTTAAGGTATCGTTGTTTATTGGTGGTGGTGTTGAAATGAATGGGAAAAAAAGTATTGAAAATGGACAATTGATTTTGCAACGGTTTAAAGAAGATTGGGCTTCTGCTCAAAGGGTTGTTACTGAAGAATCTTCTGAAACTCATGAAACTTCTATGCCTAAAAGGGTCCTTGAAAGATTGGCTACTCCAGAAATATGGATGAAGCCAAACAGTGACAAGTATTATCAATGTGTGTCACGACCTAGGAATCGAATGAAACCGTCAAAAACCAACGGCTATCTTCTTGTTCATGCAAATGGTGGATTGAATCAAATGAGAACAGGGATTCTAAAAATCTTCAATGACATGCAGATATGTGACATGGTAGCTGTGGCAAAAATAATGAATGCCACACTTGTCCTTCCTTCTCTTGACCATGATTCATTTTGGACTGATCCAAGTGACTTCAAAGATATTTTTGATTGGAGGCTCTTCATGAAAGTTTTAAAAGAAGACATTGATATTGTCGAGTACTTGCCTGTCCGATATGCATCTGTGAAGCCTATTGTCAAGGCCCCGGTTTCATGGTCAAAGGCTAGTTACTATAGAAGTGAGATTCTTCCAATGTTGAAGAGACACAAGGTTGTACAATTTACTCACACAGATTCAAGACTTGCCAACAATGGTCTTGCTTCATCTATTCAGAAGCTGAGATGTCGTGCCAATTACCAAGCTCTTAAGTATACAGTTGAGATTGAGGAGCTTGGAAAGACCTTGGTTGATAGGCTAAGAAGTAATGATGAGCCATTCGTTGCCCTTCATTTAAGATATGAGAAAGACATGCTGGCTTTTACTGGCTGTAACCATAATCTTACTATTGAGGAGGCCGAGGAACTTAGGGTTATGAGGTATGAAGTGAAGCATTGGAAGGAAAAAGAGATTGATAGCGTCGATCGACGATTGCAAGGAGGTTGCCCTATGTCACCAAGAGAAGCAGCCATTTTTCTCAAGGCCATGGGGTACCCTTCAACTACAACAATCTACATTGTTGCAGGACCTATCTATGGTGGCAATAGTATGGCAGCCTTTCGCGCCGAATATCCTAATGTCTTTACTCATTCAACCCTTGCAACTGAGGAGGAGCTAGAGCCTTTCAAGCCGTATCAAAATCGTCTTGCTGCTTTGGACTATATTGTTGCCCTTGAAAGTGATGTCTTTGTTTATACTTATGATGGAAACATGGCCAAGGCTGTGCAAGGTCATAGGAGGTTTGAAGGATTTCGGAAAACTATCAATCCTGATAGGTAG
Protein sequence

>MsG0480018851.01.T01

MRLFIVRKFSIIPSFAMSSGGPATASTNTSPRVAGPTTTRRRVADNNVNNDTEKQQQQAFPDFSELEHQDNDPVSSLLNLNHHAHVHHHLHPITRYFLLRARIFIEHFLLTLSGSVQWFRSGKNVGRKIFAVLIMLVVMSVFFKVSLFIGGGVEMNGKKSIENGQLILQRFKEDWASAQRVVTEESSETHETSMPKRVLERLATPEIWMKPNSDKYYQCVSRPRNRMKPSKTNGYLLVHANGGLNQMRTGILKIFNDMQICDMVAVAKIMNATLVLPSLDHDSFWTDPSDFKDIFDWRLFMKVLKEDIDIVEYLPVRYASVKPIVKAPVSWSKASYYRSEILPMLKRHKVVQFTHTDSRLANNGLASSIQKLRCRANYQALKYTVEIEELGKTLVDRLRSNDEPFVALHLRYEKDMLAFTGCNHNLTIEEAEELRVMRYEVKHWKEKEIDSVDRRLQGGCPMSPREAAIFLKAMGYPSTTTIYIVAGPIYGGNSMAAFRAEYPNVFTHSTLATEEELEPFKPYQNRLAALDYIVALESDVFVYTYDGNMAKAVQGHRRFEGFRKTINPDR*