AlfalfaGEDB | MsG0480019591.01

M. sativa cultivar ZhongmuNo.1 / MsG0480019591.01

KEGG: -
GO: -
PFAM: PF00650 PF03765

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480019591.01.T01	XP_039689207.1	82.415	472	43	7	18	468	13	465	0	713

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480019591.01.T01	Q56Z59	55.236	487	180	7	7	465	13	489	1.65E-175	504

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480019591.01.T01	B7FL90	82.415	472	43	7	18	468	13	465	0.0	713

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0180005303.01	MsG0480019591.01	0.801181	1.016424e-48	4.822692e-46
MsG0180006064.01	MsG0480019591.01	0.822276	2.583795e-53	2.152655e-50

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480019591.01.T01	MTR_8g095360	54.237	354	126	5	129	464	163	498	2.44e-130	387
MsG0480019591.01.T01	MTR_4g033435	52.089	359	137	6	129	468	253	595	1.54e-120	365
MsG0480019591.01.T01	MTR_3g097350	53.372	341	121	7	129	449	231	553	2.01e-120	363
MsG0480019591.01.T01	MTR_2g031610	37.808	447	203	9	76	462	31	462	6.68e-95	295
MsG0480019591.01.T01	MTR_4g013300	39.500	400	190	13	95	464	68	445	2.77e-87	274
MsG0480019591.01.T01	MTR_7g070480	38.298	423	206	13	78	467	22	422	3.42e-87	274
MsG0480019591.01.T01	MTR_4g033435	63.905	169	60	1	129	296	253	421	6.80e-74	240
MsG0480019591.01.T01	MTR_1g069915	38.122	362	190	8	119	464	121	464	1.05e-71	234

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480019591.01.T01	AT1G72160	55.236	487	180	7	7	465	13	489	1.69e-176	504
MsG0480019591.01.T01	AT4G09160	58.993	417	142	5	64	467	241	641	1.38e-166	484
MsG0480019591.01.T01	AT4G09160	58.993	417	142	5	64	467	241	641	2.23e-166	484
MsG0480019591.01.T01	AT4G09160	58.993	417	142	5	64	467	266	666	2.34e-166	484
MsG0480019591.01.T01	AT1G22530	44.126	349	163	7	129	462	315	646	1.81e-92	294
MsG0480019591.01.T01	AT1G22530	44.126	349	163	7	129	462	349	680	2.41e-92	294
MsG0480019591.01.T01	AT3G51670	40.095	419	190	14	82	464	10	403	3.98e-88	275
MsG0480019591.01.T01	AT1G30690	42.978	356	168	10	129	467	201	538	5.55e-88	279
MsG0480019591.01.T01	AT1G30690	42.978	356	168	10	129	467	201	538	5.55e-88	279
MsG0480019591.01.T01	AT1G72150	43.228	347	163	8	132	462	243	571	2.28e-85	273

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Find 111 sgRNAs with CRISPR-Local

Find 226 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGAAGAGGCTTATTTAC+AGG	0.277964	4:-22865044	MsG0480019591.01.T01:CDS
AAAAGAGTATTAACACCACC+AGG	0.632092	4:+22866818	None:intergenic
AAACCACTGGTTCATCAGTC+GGG	0.438289	4:+22865130	None:intergenic
AAACTTGTTGTTGGTCTTTG+AGG	0.410244	4:+22867200	None:intergenic
AACAAGATTCCACAGAATCT+AGG	0.486991	4:-22867313	MsG0480019591.01.T01:CDS
AACCACTGGTTCATCAGTCG+GGG	0.657572	4:+22865131	None:intergenic
AACCGGGAGCTCAGGTTCAG+GGG	0.599678	4:+22867492	None:intergenic
AACTTGTTGTTGGTCTTTGA+GGG	0.447447	4:+22867201	None:intergenic
AATGGCTTTGCAGTTGCTTC+AGG	0.300328	4:-22866732	MsG0480019591.01.T01:CDS
ACAACATCATCTTGTTGTGA+TGG	0.574483	4:+22867409	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAGAAGAGGCTTATTTAC+AGG	-	Chr4:22867544-22867563	MsG0480019591.01.T01:CDS	30.0%
AAGGGGAAATTAATAGTATG+TGG	-	Chr4:22866600-22866619	MsG0480019591.01.T01:CDS	30.0%
AATGATCTTAAAAACTCTCC+TGG	-	Chr4:22865800-22865819	MsG0480019591.01.T01:intron	30.0%
AGAATCCAAAATTACAAAGG+TGG	+	Chr4:22866175-22866194	None:intergenic	30.0%
ATTAAGGGTTGCTACTAAAA+TGG	-	Chr4:22865838-22865857	MsG0480019591.01.T01:intron	30.0%
CAACAACAAGTTTCAATCTA+CGG	-	Chr4:22865398-22865417	MsG0480019591.01.T01:CDS	30.0%
CCATACACATTATAACAAAC+AGG	+	Chr4:22865632-22865651	None:intergenic	30.0%
CGAAGAATCCAAAATTACAA+AGG	+	Chr4:22866178-22866197	None:intergenic	30.0%
TAACCCTATTGTTTATGAGT+CGG	-	Chr4:22866232-22866251	MsG0480019591.01.T01:intron	30.0%
TCCTGCTAAAAAGGAATTAA+GGG	-	Chr4:22865823-22865842	MsG0480019591.01.T01:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr4	gene	22865017	22867593	22865017	ID=MsG0480019591.01;Name=MsG0480019591.01
Chr4	mRNA	22865017	22867593	22865017	ID=MsG0480019591.01.T01;Parent=MsG0480019591.01;Name=MsG0480019591.01.T01;_AED=0.38;_eAED=0.42;_QI=0\|0\|0.25\|1\|1\|1\|4\|0\|468
Chr4	exon	22866719	22867593	22866719	ID=MsG0480019591.01.T01:exon:16965;Parent=MsG0480019591.01.T01
Chr4	exon	22866549	22866650	22866549	ID=MsG0480019591.01.T01:exon:16966;Parent=MsG0480019591.01.T01
Chr4	exon	22865383	22865533	22865383	ID=MsG0480019591.01.T01:exon:16967;Parent=MsG0480019591.01.T01
Chr4	exon	22865017	22865295	22865017	ID=MsG0480019591.01.T01:exon:16968;Parent=MsG0480019591.01.T01
Chr4	CDS	22866719	22867593	22866719	ID=MsG0480019591.01.T01:cds;Parent=MsG0480019591.01.T01
Chr4	CDS	22866549	22866650	22866549	ID=MsG0480019591.01.T01:cds;Parent=MsG0480019591.01.T01
Chr4	CDS	22865383	22865533	22865383	ID=MsG0480019591.01.T01:cds;Parent=MsG0480019591.01.T01
Chr4	CDS	22865017	22865295	22865017	ID=MsG0480019591.01.T01:cds;Parent=MsG0480019591.01.T01

Gene Sequence

>MsG0480019591.01.T01

ATGGCCGAAGATAACCCCCCAAACCCTACTCCTGCTCCTGTTACACCGCCGCATACAGAAACCTATTCATCCACCCTTACCCCTGAACCTGAGCTCCCGGTTACCGAGAAAACAGAACTAACCGATGCACCTGAACCACCAGTAACCGATACAATAGGTAACCCATCACAACAAGATGATGTTGTTGCAGCTGAACTTGTTGCAACTGAACCAGAACCCTCAAAAGAAGAACAAAAAGAACAACACCAACCCAATCAGAACAAGATTCCACAGAATCTAGGTTCATTCAAAGTAGAAAGCAACAGAGTAACCGATCTATCCGAATCCGAACGAACCTCCCTCCAACAATTCAAAACTCTTCTAACAGAATCCCTCAAAGACCAACAACAAGTTTCAATCTACGGCGTTCCTCTTCTCGAAGACGAACGCACAGACACAATCCTCCTCAAATTCCTCCGAGCACGCGACTTCAAACTAAAAGAATCACACACAATGCTACAAAACACACTCCAATGGAGAAAATCATTCAACATAGACGCCCTTTTAGACGAAGATCTTGGCGATGATTTAGATAAAGTTGTTTTCATGCATGGTTTTTCAAGGGAAGGGCATCCTGTTTGTTATAATGTGTATGGTGAGTTTCAGAATAAGGAGCTTTATGAGAAAACATTTGGGAGTGAAGAAAAGAGGGAGAGGTTTTTGCGTTGGAGGGTTCAGTTTTTGGAGAAAAGTATTAGGAAACTTGATTTTAGTCCTGGTGGTGTTAATACTCTTTTTCAAGTTAATGATCTTAAAAACTCTCCTGGTCCTGCTAAAAAGGAATTAAGGGTTGCTACTAAAATGGCTTTGCAGTTGCTTCAGGATAATTATCCTGAGTTAATACCTCAAATAGCCGAACTGACTTGGGTTGGTCTGGTGGTATTGGCGTGGGACCTGGGAGTGTGCTCTTCCTTAAGGTTTCAGGTTCGATTCTCCCGGTATATCACTCCCGAGCAAGTGCCGGTTCAATATGGTGGTCTGAGTGTTGATTTTTGTGATTGCAACCCGGATTTCAGCGTTAATGATCCCACCACAGAAATTCCTGTAAAGCCGAGCACCAAGCAAACTGTGGAAATTGCTATTTATGAGCGAATTGACGTGTGTGATCTGCAGAAATGCATTATTGTCTGGGAGTTGCGTGTCGTAGGCTGGGAGGTTAGTTATAGTGCTGAATTCAAACCAGATGATAAGGATGCATATGGAGTTATTATACAGAAGGCTACAAAGATGACCCCGACTGATGAACCAGTGGTTTCAAATAGCTTTAAAGTTGCAGAACTTGGAAAGTTGTTCCTCACTGTCGACAATCCCACCGTGAAAAAGAAGAGGCTTATTTACAGGTTCAAGATCAAACCCTACTCTGATTGA

Protein sequence

>MsG0480019591.01.T01

MAEDNPPNPTPAPVTPPHTETYSSTLTPEPELPVTEKTELTDAPEPPVTDTIGNPSQQDDVVAAELVATEPEPSKEEQKEQHQPNQNKIPQNLGSFKVESNRVTDLSESERTSLQQFKTLLTESLKDQQQVSIYGVPLLEDERTDTILLKFLRARDFKLKESHTMLQNTLQWRKSFNIDALLDEDLGDDLDKVVFMHGFSREGHPVCYNVYGEFQNKELYEKTFGSEEKRERFLRWRVQFLEKSIRKLDFSPGGVNTLFQVNDLKNSPGPAKKELRVATKMALQLLQDNYPELIPQIAELTWVGLVVLAWDLGVCSSLRFQVRFSRYITPEQVPVQYGGLSVDFCDCNPDFSVNDPTTEIPVKPSTKQTVEIAIYERIDVCDLQKCIIVWELRVVGWEVSYSAEFKPDDKDAYGVIIQKATKMTPTDEPVVSNSFKVAELGKLFLTVDNPTVKKKRLIYRFKIKPYSD*