AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480020534.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480020534.01.T01 MTR_4g053120 97.419 155 4 0 96 250 1 155 4.36e-109 311
MsG0480020534.01.T01 MTR_2g086510 74.194 155 40 0 96 250 1 155 1.91e-81 241
MsG0480020534.01.T01 MTR_1g112030 64.744 156 49 3 99 250 3 156 5.49e-64 197
MsG0480020534.01.T01 MTR_1g112030 64.744 156 49 3 99 250 7 160 6.26e-64 197
MsG0480020534.01.T01 MTR_1g112050 63.226 155 51 3 99 249 1 153 6.55e-61 189
MsG0480020534.01.T01 MTR_2g006290 59.259 135 40 4 119 249 25 148 1.07e-48 157
MsG0480020534.01.T01 MTR_8g088720 65.138 109 37 1 141 249 39 146 5.61e-46 150
MsG0480020534.01.T01 MTR_5g006320 40.404 99 57 2 151 249 47 143 9.69e-20 83.2
MsG0480020534.01.T01 MTR_4g098490 28.767 146 101 1 108 250 14 159 1.49e-16 75.5
MsG0480020534.01.T01 MTR_0867s0010 44.156 77 39 2 2 77 55 128 7.88e-15 73.2
MsG0480020534.01.T01 MTR_6g081150 55.556 54 23 1 17 69 40 93 2.65e-14 69.3
MsG0480020534.01.T01 MTR_7g107340 52.542 59 28 0 16 74 98 156 2.31e-13 68.9
MsG0480020534.01.T01 MTR_4g063670 42.667 75 41 2 3 75 56 130 9.16e-13 67.0
MsG0480020534.01.T01 MTR_7g088160 38.806 67 41 0 3 69 109 175 1.52e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480020534.01.T01 AT2G27510 59.355 155 60 2 99 250 1 155 7.70e-60 186
MsG0480020534.01.T01 AT1G60950 67.568 111 33 2 141 249 38 147 1.43e-47 155
MsG0480020534.01.T01 AT1G10960 58.209 134 48 4 115 246 17 144 3.59e-45 149
MsG0480020534.01.T01 AT5G10000 53.465 101 47 0 149 249 47 147 4.25e-37 128
MsG0480020534.01.T01 AT4G14890 45.263 95 50 2 155 249 52 144 8.58e-21 86.3
MsG0480020534.01.T01 AT1G32550 37.209 86 54 0 165 250 69 154 1.44e-16 75.5
MsG0480020534.01.T01 AT1G32550 34.314 102 48 3 165 250 69 167 7.52e-11 60.1

Find 67 sgRNAs with CRISPR-Local

Find 339 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGAAGTTCCCTTCATCTTTC+GGG 0.151505 4:-42992457 MsG0480020534.01.T01:CDS
TGTGCTGGAAAGATTGTTTC+TGG 0.226463 4:-42992227 MsG0480020534.01.T01:CDS
GCTCCAGCACGGCATGAATA+AGG 0.234304 4:+42992260 None:intergenic
TTTGGCATTATTAGTTATTT+GGG 0.248571 4:-42991967 MsG0480020534.01.T01:three_prime_UTR
GCTTACAAGGTCAAGCTTAT+TGG 0.250602 4:-42992365 MsG0480020534.01.T01:CDS
AGTTGACCTGATTCCTTCTT+TGG 0.252978 4:+42996835 None:intergenic
GCGAAGTTCCCTTCATCTTT+CGG 0.263582 4:-42992458 MsG0480020534.01.T01:CDS
ATAATCAACCATTCATAAAT+TGG 0.284529 4:-42991839 MsG0480020534.01.T01:three_prime_UTR
TGACTTCAAGCCACAAGATT+TGG 0.293119 4:+42992418 None:intergenic
CTTGGATGATAATCAACTTA+AGG 0.362806 4:-42992177 MsG0480020534.01.T01:CDS
TCAATCTGATGGCTCATTCT+TGG 0.370368 4:-42992195 MsG0480020534.01.T01:CDS
AGCAACAGATTTAACTTTCA+AGG 0.383946 4:+42992062 None:intergenic
AACTGCAATGGCTGCTTACA+AGG 0.410013 4:-42992378 MsG0480020534.01.T01:CDS
CTCCCTTATTCATGCCGTGC+TGG 0.418450 4:-42992263 MsG0480020534.01.T01:CDS
TCTAAGATGTAAACATCATC+GGG 0.429231 4:+42992311 None:intergenic
CAACTTCCAAAGAAGGAATC+AGG 0.432331 4:-42996841 MsG0480020534.01.T01:CDS
TTTCTGGACCAATTTATGAA+TGG 0.438095 4:+42991831 None:intergenic
CTCCAGCACGGCATGAATAA+GGG 0.444632 4:+42992261 None:intergenic
CTCTATCTTGATATATGCAT+TGG 0.447851 4:-42991768 MsG0480020534.01.T01:three_prime_UTR
TAAAGCAGAACAACCAAATC+AGG 0.449136 4:+42992004 None:intergenic
CAGTTTGAATCATGCATAGC+GGG 0.450595 4:+42992513 None:intergenic
GGAGCTTGCTCTACTTGTGC+TGG 0.452619 4:-42992242 MsG0480020534.01.T01:CDS
TGATCTCTACTGAGAAATGT+TGG 0.477027 4:-42992087 MsG0480020534.01.T01:exon
TACTAACACGTGTATTCAAT+CGG 0.480503 4:+42996797 None:intergenic
TGGAAAGATTGTTTCTGGCT+CGG 0.490169 4:-42992222 MsG0480020534.01.T01:CDS
TATGCAATCTGCGGTTGGAT+AGG 0.494449 4:+42992130 None:intergenic
GTCAAGCTTATTGGACCAGA+TGG 0.514160 4:-42992356 MsG0480020534.01.T01:CDS
GCAACAGATTTAACTTTCAA+GGG 0.518228 4:+42992063 None:intergenic
TTTGTAGACCCGAAAGATGA+AGG 0.518911 4:+42992449 None:intergenic
AAAGTTAAATCTGTTGCTCA+AGG 0.519496 4:-42992057 MsG0480020534.01.T01:three_prime_UTR
AATTGTGGTAATTCCTGTGT+TGG 0.523459 4:-42993620 MsG0480020534.01.T01:CDS
ATCTAAGATGTAAACATCAT+CGG 0.524266 4:+42992310 None:intergenic
GATCTCTACTGAGAAATGTT+GGG 0.527013 4:-42992086 MsG0480020534.01.T01:exon
GGCTCGGTGGATCAATCTGA+TGG 0.542825 4:-42992206 MsG0480020534.01.T01:CDS
AAGAGTGTTTCCAAATCTTG+TGG 0.543692 4:-42992428 MsG0480020534.01.T01:CDS
CTTTGGAAGTTGATTGCGGT+AGG 0.547447 4:+42996852 None:intergenic
GATGATAATCAACTTAAGGA+TGG 0.547500 4:-42992173 MsG0480020534.01.T01:CDS
TCAATTATGCAATCTGCGGT+TGG 0.549164 4:+42992125 None:intergenic
CCGCAATCAACTTCCAAAGA+AGG 0.551378 4:-42996848 MsG0480020534.01.T01:CDS
TAGAGATGTGTATTGTTGAA+TGG 0.557388 4:+42991786 None:intergenic
ATTGTGGTAATTCCTGTGTT+GGG 0.562002 4:-42993619 MsG0480020534.01.T01:CDS
TCAGCTTTGAACATAAATTG+TGG 0.570227 4:-42993635 MsG0480020534.01.T01:intron
TTAGATGCAGCAGAGGATGC+CGG 0.589423 4:-42992293 MsG0480020534.01.T01:CDS
CCATTCCCACTGACCACTAG+AGG 0.594276 4:+42993556 None:intergenic
CCTTCTTTGGAAGTTGATTG+CGG 0.597110 4:+42996848 None:intergenic
TAGCAATGGTTGATTGATTG+CGG 0.600774 4:+42992486 None:intergenic
TTCATATAGAACAACTGCAA+TGG 0.601127 4:-42992390 MsG0480020534.01.T01:CDS
GAACTTCGCTGTGGTAGCAA+TGG 0.602045 4:+42992472 None:intergenic
CATTCCCACTGACCACTAGA+GGG 0.611000 4:+42993557 None:intergenic
TTGTAGACCCGAAAGATGAA+GGG 0.611828 4:+42992450 None:intergenic
ATAATTGAAACTCACAAGGA+AGG 0.616403 4:-42992110 MsG0480020534.01.T01:CDS
AAAGATTGTTTCTGGCTCGG+TGG 0.616952 4:-42992219 MsG0480020534.01.T01:CDS
TTCCCACTGACCACTAGAGG+GGG 0.629233 4:+42993559 None:intergenic
GGAAACATTCACAGCTGACA+AGG 0.632858 4:+42992535 None:intergenic
TTACATCTTAGATGCAGCAG+AGG 0.636425 4:-42992300 MsG0480020534.01.T01:CDS
AAGTAGAGCAAGCTCCAGCA+CGG 0.637088 4:+42992249 None:intergenic
TGAATAAGGGAGTTCAACAC+CGG 0.645101 4:+42992274 None:intergenic
TATATGAGCTGACCCAACAC+AGG 0.653662 4:+42993607 None:intergenic
TGCGGTTGGATAGGAAACAC+AGG 0.661542 4:+42992139 None:intergenic
ATTCCCACTGACCACTAGAG+GGG 0.672755 4:+42993558 None:intergenic
AGTTTCAATTATGCAATCTG+CGG 0.680241 4:+42992121 None:intergenic
GCAGTTTGAATCATGCATAG+CGG 0.684816 4:+42992512 None:intergenic
TTGCATAATTGAAACTCACA+AGG 0.686967 4:-42992114 MsG0480020534.01.T01:CDS
TAAGATGTAAACATCATCGG+GGG 0.710033 4:+42992313 None:intergenic
AGTTTGAATCATGCATAGCG+GGG 0.714486 4:+42992514 None:intergenic
AGATGAAGGGAACTTCGCTG+TGG 0.735830 4:+42992463 None:intergenic
CTAAGATGTAAACATCATCG+GGG 0.747899 4:+42992312 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATAAGAATAAGAAATAAA+AGG - Chr4:42993636-42993655 MsG0480020534.01.T01:intron 10.0%
!!! AATTGATGTTATATTTTTTT+TGG - Chr4:42994030-42994049 MsG0480020534.01.T01:intron 10.0%
!!! TTATTAAAATTTTAAAAACC+GGG + Chr4:42993268-42993287 None:intergenic 10.0%
!! TAATAATGAATAATTGAAGA+TGG + Chr4:42994746-42994765 None:intergenic 15.0%
!! TGATACTTAAACATAAATAT+CGG + Chr4:42994961-42994980 None:intergenic 15.0%
!!! AAAGAAAGTTTAATTTTGAT+GGG + Chr4:42994325-42994344 None:intergenic 15.0%
!!! AGAAAAAAAATCATGAATTT+TGG + Chr4:42993340-42993359 None:intergenic 15.0%
!!! TAATTTTTAATTTCAGATGA+TGG - Chr4:42994220-42994239 MsG0480020534.01.T01:intron 15.0%
!! AAAAAGAAAGTGAAAATTTC+TGG + Chr4:42996909-42996928 None:intergenic 20.0%
!! AATACTACCACTTATAATAT+GGG - Chr4:42992326-42992345 MsG0480020534.01.T01:CDS 20.0%
!! ATAATCAACCATTCATAAAT+TGG - Chr4:42996882-42996901 MsG0480020534.01.T01:CDS 20.0%
!! ATTAAACAAACCATTGTAAA+TGG + Chr4:42992997-42993016 None:intergenic 20.0%
!! CAAGTTGTAAAATTACAAAA+TGG + Chr4:42994246-42994265 None:intergenic 20.0%
!! CCATAAAAATTTACAAAGAA+TGG + Chr4:42995311-42995330 None:intergenic 20.0%
!! TAAAATGTTGAAAAACATGT+TGG + Chr4:42992277-42992296 None:intergenic 20.0%
!! TAAGAATAAGAAATAAAAGG+TGG - Chr4:42993639-42993658 MsG0480020534.01.T01:intron 20.0%
!! TATTATATCCTTAATCAACT+TGG - Chr4:42994761-42994780 MsG0480020534.01.T01:intron 20.0%
!! TTAAGTATCAATGTTATGTT+CGG - Chr4:42994971-42994990 MsG0480020534.01.T01:intron 20.0%
!! TTTGGCATTATTAGTTATTT+GGG - Chr4:42996754-42996773 MsG0480020534.01.T01:intron 20.0%
!!! ATAAATTTACAGTTTGTTTG+AGG - Chr4:42995365-42995384 MsG0480020534.01.T01:intron 20.0%
!!! ATAACATCAATTTTCAATGT+AGG + Chr4:42994022-42994041 None:intergenic 20.0%
!!! ATGTTTTTCAACATTTTAGA+AGG - Chr4:42992279-42992298 MsG0480020534.01.T01:CDS 20.0%
!!! CATTCCAGTTTTTTTATAAA+CGG + Chr4:42995279-42995298 None:intergenic 20.0%
!!! CCATTCTTTGTAAATTTTTA+TGG - Chr4:42995308-42995327 MsG0480020534.01.T01:intron 20.0%
!!! CTATTGTTATTTAAAGAATG+TGG - Chr4:42996072-42996091 MsG0480020534.01.T01:intron 20.0%
!!! GAAAGAAAGTTTAATTTTGA+TGG + Chr4:42994326-42994345 None:intergenic 20.0%
!!! GATGTTATATTTTTTTTGGT+TGG - Chr4:42994034-42994053 MsG0480020534.01.T01:intron 20.0%
!!! TAACATCAATTTTCAATGTA+GGG + Chr4:42994021-42994040 None:intergenic 20.0%
!!! TAGTTTTTAGATTATAAGCT+TGG - Chr4:42996817-42996836 MsG0480020534.01.T01:CDS 20.0%
!!! TCTGAAATTAAAAATTACAG+TGG + Chr4:42994217-42994236 None:intergenic 20.0%
!!! TGCAATTTTTTGTTTTTGAA+TGG - Chr4:42995769-42995788 MsG0480020534.01.T01:intron 20.0%
!!! TTTAGTATCAACTTTTCTTT+TGG - Chr4:42996736-42996755 MsG0480020534.01.T01:intron 20.0%
!!! TTTTGGCATTATTAGTTATT+TGG - Chr4:42996753-42996772 MsG0480020534.01.T01:intron 20.0%
! AAACTCTTCAAAAAGAACAA+AGG - Chr4:42992121-42992140 MsG0480020534.01.T01:CDS 25.0%
! AAAGAATACTTGTGGATATT+AGG - Chr4:42995960-42995979 MsG0480020534.01.T01:intron 25.0%
! AAAGTTTAAGGAAAGAAAGT+AGG - Chr4:42993857-42993876 MsG0480020534.01.T01:intron 25.0%
! AAGAATACTTGTGGATATTA+GGG - Chr4:42995961-42995980 MsG0480020534.01.T01:intron 25.0%
! AATAAGAAATAAAAGGTGGT+GGG - Chr4:42993643-42993662 MsG0480020534.01.T01:intron 25.0%
! AGAATCATTAAGAAAAGATG+TGG - Chr4:42992448-42992467 MsG0480020534.01.T01:CDS 25.0%
! ATAATACCCCATATTATAAG+TGG + Chr4:42992336-42992355 None:intergenic 25.0%
! ATACTACCACTTATAATATG+GGG - Chr4:42992327-42992346 MsG0480020534.01.T01:CDS 25.0%
! ATGAAGATAGTGAAAAAACT+TGG + Chr4:42993409-42993428 None:intergenic 25.0%
! CGTTTATAAAAAAACTGGAA+TGG - Chr4:42995277-42995296 MsG0480020534.01.T01:intron 25.0%
! GAAAATAAGACCATTTACAA+TGG - Chr4:42992984-42993003 MsG0480020534.01.T01:intron 25.0%
! GAATACTACCACTTATAATA+TGG - Chr4:42992325-42992344 MsG0480020534.01.T01:CDS 25.0%
! GAGATGATTATTTAGTTGTT+TGG - Chr4:42993929-42993948 MsG0480020534.01.T01:intron 25.0%
! TATGTTATGAATGAATGTGA+TGG + Chr4:42994539-42994558 None:intergenic 25.0%
! TATTGAAAGATGAACCAAAA+TGG - Chr4:42992081-42992100 MsG0480020534.01.T01:exon 25.0%
! TGATGATATTTATCCTGAAT+GGG - Chr4:42992361-42992380 MsG0480020534.01.T01:CDS 25.0%
! TGTTGAATGAAAAAAACCAT+TGG - Chr4:42993672-42993691 MsG0480020534.01.T01:intron 25.0%
! TTGTTTGGTATAAAAGAAAG+TGG - Chr4:42993944-42993963 MsG0480020534.01.T01:intron 25.0%
! TTTCTCTATAAATAGAGACT+TGG - Chr4:42993355-42993374 MsG0480020534.01.T01:intron 25.0%
!! AACATCAATTTTCAATGTAG+GGG + Chr4:42994020-42994039 None:intergenic 25.0%
!! ATCTAAGATGTAAACATCAT+CGG + Chr4:42996414-42996433 None:intergenic 25.0%
!! TCATCAATTGAAGTATCTAA+TGG - Chr4:42992653-42992672 MsG0480020534.01.T01:intron 25.0%
!! TTATAAGTGGAGTTCTTTTA+TGG - Chr4:42995852-42995871 MsG0480020534.01.T01:intron 25.0%
!!! AAGGAAAATTCTGAAATGAT+GGG - Chr4:42993215-42993234 MsG0480020534.01.T01:intron 25.0%
!!! AAGTGAATTAAAGCTTTGTT+TGG - Chr4:42993824-42993843 MsG0480020534.01.T01:intron 25.0%
!!! AATGAATGTGATGGTTTTTT+CGG + Chr4:42994530-42994549 None:intergenic 25.0%
!!! ATTTTTAAGTGCTTCTTCAA+TGG + Chr4:42992937-42992956 None:intergenic 25.0%
!!! GAAGAAGCACTTAAAAATTA+GGG - Chr4:42992939-42992958 MsG0480020534.01.T01:intron 25.0%
!!! TGAAGAAGCACTTAAAAATT+AGG - Chr4:42992938-42992957 MsG0480020534.01.T01:intron 25.0%
!!! TTGAGTTGTTTTGTTGATTA+GGG - Chr4:42994852-42994871 MsG0480020534.01.T01:intron 25.0%
!!! TTTTTAAGTGCTTCTTCAAT+GGG + Chr4:42992936-42992955 None:intergenic 25.0%
AAAGATGAACCAAAATGGAA+GGG - Chr4:42992086-42992105 MsG0480020534.01.T01:exon 30.0%
AAAGTTAAATCTGTTGCTCA+AGG - Chr4:42996664-42996683 MsG0480020534.01.T01:intron 30.0%
AAATAACAATAGCCTTCTGT+AGG + Chr4:42996064-42996083 None:intergenic 30.0%
AACAAGAAAAATCAGTCCAA+TGG - Chr4:42993026-42993045 MsG0480020534.01.T01:intron 30.0%
AAGCTTTCAATTGTGTTGAA+CGG + Chr4:42993101-42993120 None:intergenic 30.0%
AATAAATGCCTGGATTTAAC+TGG - Chr4:42995604-42995623 MsG0480020534.01.T01:intron 30.0%
AATAAGGAAAGAAAGCAAAG+AGG + Chr4:42994400-42994419 None:intergenic 30.0%
AGAGCCGTTTATAAAAAAAC+TGG - Chr4:42995272-42995291 MsG0480020534.01.T01:intron 30.0%
AGGATTTATACACAAGATAC+AGG - Chr4:42992027-42992046 MsG0480020534.01.T01:three_prime_UTR 30.0%
AGTATTCACCGTGTATTATT+GGG + Chr4:42992312-42992331 None:intergenic 30.0%
AGTTTCAATTATGCAATCTG+CGG + Chr4:42996603-42996622 None:intergenic 30.0%
ATAAGAAATAAAAGGTGGTG+GGG - Chr4:42993644-42993663 MsG0480020534.01.T01:intron 30.0%
ATAATTGAAACTCACAAGGA+AGG - Chr4:42996611-42996630 MsG0480020534.01.T01:intron 30.0%
CCAAGAGTTCAAAATTATGA+TGG + Chr4:42996016-42996035 None:intergenic 30.0%
CTCTATCTTGATATATGCAT+TGG - Chr4:42996953-42996972 MsG0480020534.01.T01:CDS 30.0%
CTGATGATATTTATCCTGAA+TGG - Chr4:42992360-42992379 MsG0480020534.01.T01:CDS 30.0%
CTTGGATGATAATCAACTTA+AGG - Chr4:42996544-42996563 MsG0480020534.01.T01:intron 30.0%
GAAAGTGAATAGAAAATGAG+TGG - Chr4:42993901-42993920 MsG0480020534.01.T01:intron 30.0%
GAAAGTGGAAAGAATGTTAA+AGG - Chr4:42993959-42993978 MsG0480020534.01.T01:intron 30.0%
GAATAAGAAATAAAAGGTGG+TGG - Chr4:42993642-42993661 MsG0480020534.01.T01:intron 30.0%
GATGATAATCAACTTAAGGA+TGG - Chr4:42996548-42996567 MsG0480020534.01.T01:intron 30.0%
GGATTTATACACAAGATACA+GGG - Chr4:42992028-42992047 MsG0480020534.01.T01:three_prime_UTR 30.0%
GTCAAGTTAAAGAATACTTG+TGG - Chr4:42995952-42995971 MsG0480020534.01.T01:intron 30.0%
GTGTAAACTATTTAGCACTT+GGG - Chr4:42995678-42995697 MsG0480020534.01.T01:intron 30.0%
GTGTCAAGCAAATTAATGAA+GGG - Chr4:42994175-42994194 MsG0480020534.01.T01:intron 30.0%
GTGTTGGAAATTGAAAAAGT+GGG - Chr4:42993746-42993765 MsG0480020534.01.T01:intron 30.0%
TAAGCAAAACAATAAATGCC+TGG - Chr4:42995594-42995613 MsG0480020534.01.T01:intron 30.0%
TACTAACACGTGTATTCAAT+CGG + Chr4:42991927-42991946 None:intergenic 30.0%
TAGAGATGTGTATTGTTGAA+TGG + Chr4:42996938-42996957 None:intergenic 30.0%
TAGTATTCACCGTGTATTAT+TGG + Chr4:42992313-42992332 None:intergenic 30.0%
TCTTAATGATTCTTGTCGTT+TGG + Chr4:42992441-42992460 None:intergenic 30.0%
TGTAAACTATTTAGCACTTG+GGG - Chr4:42995679-42995698 MsG0480020534.01.T01:intron 30.0%
TTAAGAGAGAGAAAATGATG+TGG - Chr4:42993722-42993741 MsG0480020534.01.T01:intron 30.0%
TTATGTACCACATACATTGA+AGG - Chr4:42994879-42994898 MsG0480020534.01.T01:intron 30.0%
TTCATATAGAACAACTGCAA+TGG - Chr4:42996331-42996350 MsG0480020534.01.T01:intron 30.0%
TTGCATAATTGAAACTCACA+AGG - Chr4:42996607-42996626 MsG0480020534.01.T01:intron 30.0%
TTTCTGGACCAATTTATGAA+TGG + Chr4:42996893-42996912 None:intergenic 30.0%
! AAGAGTATAACCATTGTACA+TGG - Chr4:42993785-42993804 MsG0480020534.01.T01:intron 30.0%
! AAGGAAACTGAGAGTTTTTA+AGG - Chr4:42996683-42996702 MsG0480020534.01.T01:intron 30.0%
! AGCAACAGATTTAACTTTCA+AGG + Chr4:42996662-42996681 None:intergenic 30.0%
! AGTGTTGGAAATTGAAAAAG+TGG - Chr4:42993745-42993764 MsG0480020534.01.T01:intron 30.0%
! ATAATTGTCTCTTTTCTCCT+TGG + Chr4:42992415-42992434 None:intergenic 30.0%
! ATGCATGTTTCTAAAAAGTG+AGG + Chr4:42992686-42992705 None:intergenic 30.0%
! CCATCATAATTTTGAACTCT+TGG - Chr4:42996013-42996032 MsG0480020534.01.T01:intron 30.0%
! CTCTGAAAAATAACAGTACA+TGG + Chr4:42995644-42995663 None:intergenic 30.0%
! GCAACAGATTTAACTTTCAA+GGG + Chr4:42996661-42996680 None:intergenic 30.0%
! TAATTGTCTCTTTTCTCCTT+GGG + Chr4:42992414-42992433 None:intergenic 30.0%
! TCAATTCTTGATCTAGTTTG+AGG - Chr4:42994808-42994827 MsG0480020534.01.T01:intron 30.0%
! TCTAAGATGTAAACATCATC+GGG + Chr4:42996413-42996432 None:intergenic 30.0%
! TGAAGGTTTTCACTAGTAAA+TGG - Chr4:42995513-42995532 MsG0480020534.01.T01:intron 30.0%
! TTCAACTTTTATCTCTCCAA+TGG + Chr4:42993691-42993710 None:intergenic 30.0%
! TTCTTTTAGACCATGTACAA+TGG + Chr4:42993798-42993817 None:intergenic 30.0%
! TTCTTTTTGAATGAACACGT+TGG + Chr4:42992177-42992196 None:intergenic 30.0%
!! AAATCTTTGTTGTTCATGCA+TGG - Chr4:42992054-42992073 MsG0480020534.01.T01:three_prime_UTR 30.0%
!! AACAACAACCAAGTTGATTA+AGG + Chr4:42994772-42994791 None:intergenic 30.0%
!! AGGAAAATTCTGAAATGATG+GGG - Chr4:42993216-42993235 MsG0480020534.01.T01:intron 30.0%
!! ATTTATTTTCAGGGTGATCA+TGG - Chr4:42996160-42996179 MsG0480020534.01.T01:intron 30.0%
!! CTTGAGTTGTTTTGTTGATT+AGG - Chr4:42994851-42994870 MsG0480020534.01.T01:intron 30.0%
!! GAAGGAAAATTCTGAAATGA+TGG - Chr4:42993214-42993233 MsG0480020534.01.T01:intron 30.0%
!! GGCATTTATTGTTTTGCTTA+CGG + Chr4:42995594-42995613 None:intergenic 30.0%
!! TCAGCTTTGAACATAAATTG+TGG - Chr4:42995086-42995105 MsG0480020534.01.T01:intron 30.0%
!! TTTCAGAGTTGGTATTGTAA+GGG - Chr4:42995656-42995675 MsG0480020534.01.T01:intron 30.0%
!! TTTTAGAAACATGCATGCAA+AGG - Chr4:42992690-42992709 MsG0480020534.01.T01:intron 30.0%
!!! AGCTTTGTTTTGACTTCAAT+TGG - Chr4:42995138-42995157 MsG0480020534.01.T01:intron 30.0%
!!! ATTTTTTTCCTTCCTACAGA+AGG - Chr4:42996049-42996068 MsG0480020534.01.T01:intron 30.0%
!!! GCTTTGTTTTGACTTCAATT+GGG - Chr4:42995139-42995158 MsG0480020534.01.T01:intron 30.0%
!!! GTACTGTTATTTTTCAGAGT+TGG - Chr4:42995645-42995664 MsG0480020534.01.T01:intron 30.0%
!!! TATAAACGGCTCTTGTTTTA+TGG + Chr4:42995265-42995284 None:intergenic 30.0%
!!! TCTTATTTTCTCACTTACGT+GGG + Chr4:42992974-42992993 None:intergenic 30.0%
!!! TGATGTCATTTTAGTCTTGA+AGG - Chr4:42996857-42996876 MsG0480020534.01.T01:CDS 30.0%
!!! TTGTTCATGCATGCTTTTTT+TGG - Chr4:42992210-42992229 MsG0480020534.01.T01:CDS 30.0%
!!! TTTTCAGAGTTGGTATTGTA+AGG - Chr4:42995655-42995674 MsG0480020534.01.T01:intron 30.0%
AAAACATTCTTTCCCTTGCA+TGG + Chr4:42994365-42994384 None:intergenic 35.0%
AATTGTGGTAATTCCTGTGT+TGG - Chr4:42995101-42995120 MsG0480020534.01.T01:intron 35.0%
ACAACTCAAGTTTGCATCTT+TGG + Chr4:42994841-42994860 None:intergenic 35.0%
ACACGTGTTAGTAAGTTTGT+GGG - Chr4:42991934-42991953 MsG0480020534.01.T01:three_prime_UTR 35.0%
AGAACAAAGGTTTCTACTAG+CGG - Chr4:42992134-42992153 MsG0480020534.01.T01:CDS 35.0%
ATAAACCCTGATCAAGATCA+AGG + Chr4:42994712-42994731 None:intergenic 35.0%
ATAGCTAACCTGATAGGTTT+AGG - Chr4:42995893-42995912 MsG0480020534.01.T01:intron 35.0%
ATATAATGACTGAGGCACAT+AGG - Chr4:42992007-42992026 MsG0480020534.01.T01:three_prime_UTR 35.0%
ATCAAACCTTGATCTTGATC+AGG - Chr4:42994703-42994722 MsG0480020534.01.T01:intron 35.0%
ATCTTATGCCTAAACCTATC+AGG + Chr4:42995904-42995923 None:intergenic 35.0%
ATTGTGGTAATTCCTGTGTT+GGG - Chr4:42995102-42995121 MsG0480020534.01.T01:intron 35.0%
CACTTAAAAATTAGGGCCAA+AGG - Chr4:42992946-42992965 MsG0480020534.01.T01:intron 35.0%
CGTGTCAAGCAAATTAATGA+AGG - Chr4:42994174-42994193 MsG0480020534.01.T01:intron 35.0%
CTAAGATGTAAACATCATCG+GGG + Chr4:42996412-42996431 None:intergenic 35.0%
CTCTTTATAGCTAACCTGAT+AGG - Chr4:42995887-42995906 MsG0480020534.01.T01:intron 35.0%
GAAAGATGAACCAAAATGGA+AGG - Chr4:42992085-42992104 MsG0480020534.01.T01:exon 35.0%
GATCTCTACTGAGAAATGTT+GGG - Chr4:42996635-42996654 MsG0480020534.01.T01:intron 35.0%
GCGGTTAATCAAAACAAAAG+TGG - Chr4:42991970-42991989 MsG0480020534.01.T01:three_prime_UTR 35.0%
GGAAGAGAAGAGAAAGTTTA+AGG - Chr4:42993845-42993864 MsG0480020534.01.T01:intron 35.0%
GGTGTAAACTATTTAGCACT+TGG - Chr4:42995677-42995696 MsG0480020534.01.T01:intron 35.0%
GTAGGAGGAAAGAATGTTTA+AGG - Chr4:42993875-42993894 MsG0480020534.01.T01:intron 35.0%
GTTTAAGGAAAGAAAGTAGG+AGG - Chr4:42993860-42993879 MsG0480020534.01.T01:intron 35.0%
TAAAGCAGAACAACCAAATC+AGG + Chr4:42996720-42996739 None:intergenic 35.0%
TAAGATGTAAACATCATCGG+GGG + Chr4:42996411-42996430 None:intergenic 35.0%
TACACGTGTTAGTAAGTTTG+TGG - Chr4:42991933-42991952 MsG0480020534.01.T01:three_prime_UTR 35.0%
TAGCAATGGTTGATTGATTG+CGG + Chr4:42996238-42996257 None:intergenic 35.0%
TCAAACCTTGATCTTGATCA+GGG - Chr4:42994704-42994723 MsG0480020534.01.T01:intron 35.0%
TCTTGATTCACAATTGTACG+CGG - Chr4:42992494-42992513 MsG0480020534.01.T01:CDS 35.0%
TGAGGATGATATAATGACTG+AGG - Chr4:42991999-42992018 MsG0480020534.01.T01:three_prime_UTR 35.0%
TGATCTCTACTGAGAAATGT+TGG - Chr4:42996634-42996653 MsG0480020534.01.T01:intron 35.0%
TGCATAAAACTGACATTGCT+AGG + Chr4:42996101-42996120 None:intergenic 35.0%
TTAATGTCATTGTTTGAGCC+CGG + Chr4:42992240-42992259 None:intergenic 35.0%
TTACAGAGAAGAGAAGAGAA+GGG + Chr4:42994599-42994618 None:intergenic 35.0%
TTGGAACTGCAGAAACAATA+AGG + Chr4:42994416-42994435 None:intergenic 35.0%
! AACATGGCTCAACATTTTGA+AGG - Chr4:42991780-42991799 MsG0480020534.01.T01:three_prime_UTR 35.0%
! AACTCATTCTCTTTTCCATC+TGG + Chr4:42996383-42996402 None:intergenic 35.0%
! AATCTGTGGGTTATATGGTT+TGG - Chr4:42994476-42994495 MsG0480020534.01.T01:intron 35.0%
! AATTGTCTCTTTTCTCCTTG+GGG + Chr4:42992413-42992432 None:intergenic 35.0%
! ACACGCTTTTACTTCAAACA+TGG - Chr4:42991764-42991783 MsG0480020534.01.T01:three_prime_UTR 35.0%
! ACCAAAAACCTTCAGCTTTT+TGG + Chr4:42991825-42991844 None:intergenic 35.0%
! ACCAAAAAGCTGAAGGTTTT+TGG - Chr4:42991821-42991840 MsG0480020534.01.T01:three_prime_UTR 35.0%
! AGGTTAGCTATAAAGAGAGT+TGG + Chr4:42995884-42995903 None:intergenic 35.0%
! GAGACTTGGTTCATTTGATT+TGG - Chr4:42993369-42993388 MsG0480020534.01.T01:intron 35.0%
! GTTTAGCTGCATTTCTCTTT+TGG - Chr4:42995420-42995439 MsG0480020534.01.T01:intron 35.0%
! GTTTCTAAAAAGTGAGGATG+AGG + Chr4:42992680-42992699 None:intergenic 35.0%
!! AAGAGTGTTTCCAAATCTTG+TGG - Chr4:42996293-42996312 MsG0480020534.01.T01:intron 35.0%
!! AGCTATAAAGAGAGTTGGTA+TGG + Chr4:42995879-42995898 None:intergenic 35.0%
!! ATCAATGTTATGTTCGGTGT+CGG - Chr4:42994977-42994996 MsG0480020534.01.T01:intron 35.0%
!! ATTGAAAAAGTGGGTGTTGA+AGG - Chr4:42993755-42993774 MsG0480020534.01.T01:intron 35.0%
!! ATTTTGAAGGATCCAGTTGT+GGG - Chr4:42991793-42991812 MsG0480020534.01.T01:three_prime_UTR 35.0%
!! GGAAAATTCTGAAATGATGG+GGG - Chr4:42993217-42993236 MsG0480020534.01.T01:intron 35.0%
!! TTGAAAAAGTGGGTGTTGAA+GGG - Chr4:42993756-42993775 MsG0480020534.01.T01:intron 35.0%
!! TTGCGATTATATTGGTTTCC+CGG - Chr4:42993247-42993266 MsG0480020534.01.T01:intron 35.0%
!!! GTCTTATTTTCTCACTTACG+TGG + Chr4:42992975-42992994 None:intergenic 35.0%
AAAGATGTGGAACGAGCATT+TGG - Chr4:42992461-42992480 MsG0480020534.01.T01:CDS 40.0%
AACAATAGCCTTCTGTAGGA+AGG + Chr4:42996060-42996079 None:intergenic 40.0%
ACAGCCATTAAACACACCAT+TGG + Chr4:42993045-42993064 None:intergenic 40.0%
AGACACACCTTCAATGTATG+TGG + Chr4:42994889-42994908 None:intergenic 40.0%
AGTTGACCTGATTCCTTCTT+TGG + Chr4:42991889-42991908 None:intergenic 40.0%
AGTTTGAATCATGCATAGCG+GGG + Chr4:42996210-42996229 None:intergenic 40.0%
ATGGCTGTTGAAGATTGACA+TGG - Chr4:42993057-42993076 MsG0480020534.01.T01:intron 40.0%
CAACTTCCAAAGAAGGAATC+AGG - Chr4:42991880-42991899 MsG0480020534.01.T01:three_prime_UTR 40.0%
CAGTCCAATGGTGTGTTTAA+TGG - Chr4:42993038-42993057 MsG0480020534.01.T01:intron 40.0%
CAGTTTGAATCATGCATAGC+GGG + Chr4:42996211-42996230 None:intergenic 40.0%
CCAAATATGCTCCACCAAAT+CGG + Chr4:42992759-42992778 None:intergenic 40.0%
CTACAATGCCAGTTAAATCC+AGG + Chr4:42995615-42995634 None:intergenic 40.0%
CTGGATTTAACTGGCATTGT+AGG - Chr4:42995613-42995632 MsG0480020534.01.T01:intron 40.0%
CTTACAGAGAAGAGAAGAGA+AGG + Chr4:42994600-42994619 None:intergenic 40.0%
GACACGTGTTGCGATTATAT+TGG - Chr4:42993239-42993258 MsG0480020534.01.T01:intron 40.0%
GAGAAAATGATGTGGAGTGT+TGG - Chr4:42993730-42993749 MsG0480020534.01.T01:intron 40.0%
GCAGTTCCAAACATACCTAA+GGG - Chr4:42994426-42994445 MsG0480020534.01.T01:intron 40.0%
GCAGTTTGAATCATGCATAG+CGG + Chr4:42996212-42996231 None:intergenic 40.0%
GCTTACAAGGTCAAGCTTAT+TGG - Chr4:42996356-42996375 MsG0480020534.01.T01:intron 40.0%
GGAAAGAAAGCAAAGAGGAA+AGG + Chr4:42994395-42994414 None:intergenic 40.0%
GGAATTGACCAAAAAGCTGA+AGG - Chr4:42991814-42991833 MsG0480020534.01.T01:three_prime_UTR 40.0%
GGTAATAACATGTGTCCATG+TGG + Chr4:42994940-42994959 None:intergenic 40.0%
TACAGAGAAGAGAAGAGAAG+GGG + Chr4:42994598-42994617 None:intergenic 40.0%
TCAATCTGATGGCTCATTCT+TGG - Chr4:42996526-42996545 MsG0480020534.01.T01:intron 40.0%
TCAATTATGCAATCTGCGGT+TGG + Chr4:42996599-42996618 None:intergenic 40.0%
TCGAATTAAAATGCGACACG+TGG + Chr4:42993132-42993151 None:intergenic 40.0%
TGAATAAGGGAGTTCAACAC+CGG + Chr4:42996450-42996469 None:intergenic 40.0%
TGACTTCAAGCCACAAGATT+TGG + Chr4:42996306-42996325 None:intergenic 40.0%
TGCAGTTCCAAACATACCTA+AGG - Chr4:42994425-42994444 MsG0480020534.01.T01:intron 40.0%
TGTGCTGGAAAGATTGTTTC+TGG - Chr4:42996494-42996513 MsG0480020534.01.T01:intron 40.0%
TTACATCTTAGATGCAGCAG+AGG - Chr4:42996421-42996440 MsG0480020534.01.T01:intron 40.0%
TTCAGAGTGAGCGTTATAAG+TGG - Chr4:42995839-42995858 MsG0480020534.01.T01:intron 40.0%
TTCCAAACATACCTAAGGGT+TGG - Chr4:42994430-42994449 MsG0480020534.01.T01:intron 40.0%
TTGACAAATGTAGCCCATTC+AGG + Chr4:42992377-42992396 None:intergenic 40.0%
TTGTAGACCCGAAAGATGAA+GGG + Chr4:42996274-42996293 None:intergenic 40.0%
TTTGTAGACCCGAAAGATGA+AGG + Chr4:42996275-42996294 None:intergenic 40.0%
! AAACAAAAGTGGTCGCTTTG+AGG - Chr4:42991981-42992000 MsG0480020534.01.T01:three_prime_UTR 40.0%
! AAACATACCTAAGGGTTGGT+GGG - Chr4:42994434-42994453 MsG0480020534.01.T01:intron 40.0%
! ACATACATTGAAGGTGTGTC+TGG - Chr4:42994888-42994907 MsG0480020534.01.T01:intron 40.0%
! ATTGCTTCTCCCTTCCATTT+TGG + Chr4:42992098-42992117 None:intergenic 40.0%
! CCTTCTTTGGAAGTTGATTG+CGG + Chr4:42991876-42991895 None:intergenic 40.0%
! GGTAGATTTTGCACCTGATT+TGG - Chr4:42996704-42996723 MsG0480020534.01.T01:intron 40.0%
! TAGCGAATCTGTGGGTTATA+TGG - Chr4:42994471-42994490 MsG0480020534.01.T01:intron 40.0%
! TTTTGGTCAATTCCCACAAC+TGG + Chr4:42991808-42991827 None:intergenic 40.0%
!! CATTTTGAAGGATCCAGTTG+TGG - Chr4:42991792-42991811 MsG0480020534.01.T01:three_prime_UTR 40.0%
!! CGATTTGGTGGAGCATATTT+GGG - Chr4:42992757-42992776 MsG0480020534.01.T01:intron 40.0%
!! GAGAAGCACCCAATAATACA+CGG - Chr4:42992301-42992320 MsG0480020534.01.T01:CDS 40.0%
!! TCTTTGTTGTTCATGCATGG+CGG - Chr4:42992057-42992076 MsG0480020534.01.T01:three_prime_UTR 40.0%
!! TGGAAAGATTGTTTCTGGCT+CGG - Chr4:42996499-42996518 MsG0480020534.01.T01:intron 40.0%
!!! CATGCTTTTTTTGGTACTCC+GGG - Chr4:42992219-42992238 MsG0480020534.01.T01:CDS 40.0%
!!! CGTGTCGCATTTTAATTCGA+TGG - Chr4:42993132-42993151 MsG0480020534.01.T01:intron 40.0%
!!! GCATGCTTTTTTTGGTACTC+CGG - Chr4:42992218-42992237 MsG0480020534.01.T01:CDS 40.0%
!!! GTGATGGTTTTTTCGGAGTT+GGG + Chr4:42994523-42994542 None:intergenic 40.0%
!!! TGTGATGGTTTTTTCGGAGT+TGG + Chr4:42994524-42994543 None:intergenic 40.0%
AACATGTGTCCATGTGGTGT+TGG + Chr4:42994934-42994953 None:intergenic 45.0%
AACTGCAATGGCTGCTTACA+AGG - Chr4:42996343-42996362 MsG0480020534.01.T01:intron 45.0%
ACAAAGGTTTCTACTAGCGG+AGG - Chr4:42992137-42992156 MsG0480020534.01.T01:CDS 45.0%
ACCTTCAACCATCATCTGCT+TGG + Chr4:42995500-42995519 None:intergenic 45.0%
AGAAGAGAAGGGGAAGATGA+TGG + Chr4:42994588-42994607 None:intergenic 45.0%
AGCTCTTTGTTCTTCACTCG+TGG + Chr4:42995216-42995235 None:intergenic 45.0%
CAAACATACCTAAGGGTTGG+TGG - Chr4:42994433-42994452 MsG0480020534.01.T01:intron 45.0%
CAAAGGTTTCTACTAGCGGA+GGG - Chr4:42992138-42992157 MsG0480020534.01.T01:CDS 45.0%
CACCAACCCTTAGGTATGTT+TGG + Chr4:42994435-42994454 None:intergenic 45.0%
CCGCAATCAACTTCCAAAGA+AGG - Chr4:42991873-42991892 MsG0480020534.01.T01:three_prime_UTR 45.0%
CGAAGTTCCCTTCATCTTTC+GGG - Chr4:42996264-42996283 MsG0480020534.01.T01:intron 45.0%
CTGACAATGCAACCATGCAA+GGG - Chr4:42994350-42994369 MsG0480020534.01.T01:intron 45.0%
GACGAACGTGACACATAAGA+TGG - Chr4:42992596-42992615 MsG0480020534.01.T01:intron 45.0%
GATTGACATGGATGAGAGAG+AGG - Chr4:42993069-42993088 MsG0480020534.01.T01:intron 45.0%
GCGAAGTTCCCTTCATCTTT+CGG - Chr4:42996263-42996282 MsG0480020534.01.T01:intron 45.0%
GGAAACATTCACAGCTGACA+AGG + Chr4:42996189-42996208 None:intergenic 45.0%
GGCTTGCAGATGACAATAGT+AGG + Chr4:42995467-42995486 None:intergenic 45.0%
GTCAAGCTTATTGGACCAGA+TGG - Chr4:42996365-42996384 MsG0480020534.01.T01:intron 45.0%
TATATGAGCTGACCCAACAC+AGG + Chr4:42995117-42995136 None:intergenic 45.0%
TATGCAATCTGCGGTTGGAT+AGG + Chr4:42996594-42996613 None:intergenic 45.0%
TCATGGCAGCGAAGAAAGTT+GGG + Chr4:42994280-42994299 None:intergenic 45.0%
TCCAAGACCAACTAATCCGA+GGG + Chr4:42995192-42995211 None:intergenic 45.0%
TCGTCAACTTCAAGCCGATT+TGG - Chr4:42992742-42992761 MsG0480020534.01.T01:intron 45.0%
TCTGACAATGCAACCATGCA+AGG - Chr4:42994349-42994368 MsG0480020534.01.T01:intron 45.0%
TGTTAGTGTCCAACACCACA+TGG - Chr4:42994922-42994941 MsG0480020534.01.T01:intron 45.0%
! CTTTGGAAGTTGATTGCGGT+AGG + Chr4:42991872-42991891 None:intergenic 45.0%
!! AAAGATTGTTTCTGGCTCGG+TGG - Chr4:42996502-42996521 MsG0480020534.01.T01:intron 45.0%
!! CACTCTGAAATCACTGCAAG+AGG + Chr4:42995828-42995847 None:intergenic 45.0%
!! CCGATTTGGTGGAGCATATT+TGG - Chr4:42992756-42992775 MsG0480020534.01.T01:intron 45.0%
!! TCAACTTCAAGCCGATTTGG+TGG - Chr4:42992745-42992764 MsG0480020534.01.T01:intron 45.0%
!! TCTTTTCTCCTTGGGGCATT+GGG + Chr4:42992406-42992425 None:intergenic 45.0%
!! AATAAATAAATATTATAAAG+TGG + Chr4:42996147-42996166 None:intergenic 5.0%
!!! ATAATATTTATTTATTTTCA+GGG - Chr4:42996151-42996170 MsG0480020534.01.T01:intron 5.0%
!!! ATTATTAAAATTTTAAAAAC+CGG + Chr4:42993269-42993288 None:intergenic 5.0%
!!! GTTTTTAAAATTTTAATAAT+TGG - Chr4:42993269-42993288 MsG0480020534.01.T01:intron 5.0%
!!! TATAATATTTATTTATTTTC+AGG - Chr4:42996150-42996169 MsG0480020534.01.T01:intron 5.0%
AAAACCATCCCAATGCCCCA+AGG - Chr4:42992395-42992414 MsG0480020534.01.T01:CDS 50.0%
AAGTAGAGCAAGCTCCAGCA+CGG + Chr4:42996475-42996494 None:intergenic 50.0%
ACTTTCTTCGCTGCCATGAG+CGG - Chr4:42994281-42994300 MsG0480020534.01.T01:intron 50.0%
AGATGAAGGGAACTTCGCTG+TGG + Chr4:42996261-42996280 None:intergenic 50.0%
ATCACAGGCCAAGCAGATGA+TGG - Chr4:42995489-42995508 MsG0480020534.01.T01:intron 50.0%
ATTCCCACTGACCACTAGAG+GGG + Chr4:42995166-42995185 None:intergenic 50.0%
CATCTGCTTGGCCTGTGATA+GGG + Chr4:42995488-42995507 None:intergenic 50.0%
CATTCCCACTGACCACTAGA+GGG + Chr4:42995167-42995186 None:intergenic 50.0%
CGGCGAAATAGCGAATCTGT+GGG - Chr4:42994463-42994482 MsG0480020534.01.T01:intron 50.0%
CTCATGGCAGCGAAGAAAGT+TGG + Chr4:42994281-42994300 None:intergenic 50.0%
CTCCAAGACCAACTAATCCG+AGG + Chr4:42995193-42995212 None:intergenic 50.0%
CTCCAGCACGGCATGAATAA+GGG + Chr4:42996463-42996482 None:intergenic 50.0%
CTTGATAGGGGGCAATTGAG+TGG - Chr4:42995026-42995045 MsG0480020534.01.T01:intron 50.0%
GAACTTCGCTGTGGTAGCAA+TGG + Chr4:42996252-42996271 None:intergenic 50.0%
GATGCGTGAAGTGCAGATGA+CGG - Chr4:42993186-42993205 MsG0480020534.01.T01:intron 50.0%
GCATGGTTGCATTGTCAGAG+TGG + Chr4:42994348-42994367 None:intergenic 50.0%
GTCTGCGTCAGTGCTTGATA+GGG - Chr4:42995013-42995032 MsG0480020534.01.T01:intron 50.0%
GTGCTAAAACCTTCCGCTCA+TGG + Chr4:42994297-42994316 None:intergenic 50.0%
TCATCTGCAAGCCCTATCAC+AGG - Chr4:42995474-42995493 MsG0480020534.01.T01:intron 50.0%
TCATCTGCTTGGCCTGTGAT+AGG + Chr4:42995489-42995508 None:intergenic 50.0%
TCTGCGTCAGTGCTTGATAG+GGG - Chr4:42995014-42995033 MsG0480020534.01.T01:intron 50.0%
TGCGGTTGGATAGGAAACAC+AGG + Chr4:42996585-42996604 None:intergenic 50.0%
TGTCTGCGTCAGTGCTTGAT+AGG - Chr4:42995012-42995031 MsG0480020534.01.T01:intron 50.0%
TTAGATGCAGCAGAGGATGC+CGG - Chr4:42996428-42996447 MsG0480020534.01.T01:intron 50.0%
TTCACGTGCCAAGAACGTGA+TGG + Chr4:42992521-42992540 None:intergenic 50.0%
! CTCTTTTCTCCTTGGGGCAT+TGG + Chr4:42992407-42992426 None:intergenic 50.0%
! GCCAAGCAGATGATGGTTGA+AGG - Chr4:42995496-42995515 MsG0480020534.01.T01:intron 50.0%
!! ACCTAAGGGTTGGTGGGTTT+GGG - Chr4:42994440-42994459 MsG0480020534.01.T01:intron 50.0%
!! AGCGGAAGGTTTTAGCACGT+GGG - Chr4:42994299-42994318 MsG0480020534.01.T01:intron 50.0%
!! GAAGGGGAAGATGATGGAAG+CGG + Chr4:42994582-42994601 None:intergenic 50.0%
!! GAATGGTCCCTCGGATTAGT+TGG - Chr4:42995182-42995201 MsG0480020534.01.T01:intron 50.0%
!! GTTATGTTCGGTGTCGGTGT+CGG - Chr4:42994983-42995002 MsG0480020534.01.T01:intron 50.0%
!! TACCTAAGGGTTGGTGGGTT+TGG - Chr4:42994439-42994458 MsG0480020534.01.T01:intron 50.0%
!! TCCCTCGGATTAGTTGGTCT+TGG - Chr4:42995188-42995207 MsG0480020534.01.T01:intron 50.0%
CCATTCCCACTGACCACTAG+AGG + Chr4:42995168-42995187 None:intergenic 55.0%
CCTCTAGTGGTCAGTGGGAA+TGG - Chr4:42995165-42995184 MsG0480020534.01.T01:intron 55.0%
CTCACTTACGTGGGTGCCTT+TGG + Chr4:42992965-42992984 None:intergenic 55.0%
CTCCCTTATTCATGCCGTGC+TGG - Chr4:42996458-42996477 MsG0480020534.01.T01:intron 55.0%
CTGCGTCAGTGCTTGATAGG+GGG - Chr4:42995015-42995034 MsG0480020534.01.T01:intron 55.0%
GCGGCGAAATAGCGAATCTG+TGG - Chr4:42994462-42994481 MsG0480020534.01.T01:intron 55.0%
GCTCCAGCACGGCATGAATA+AGG + Chr4:42996464-42996483 None:intergenic 55.0%
TACGCGGTCCATCACGTTCT+TGG - Chr4:42992510-42992529 MsG0480020534.01.T01:CDS 55.0%
TTCAATTGGGCCCCCTCTAG+TGG - Chr4:42995152-42995171 MsG0480020534.01.T01:intron 55.0%
TTCCCACTGACCACTAGAGG+GGG + Chr4:42995165-42995184 None:intergenic 55.0%
! GGAGCTTGCTCTACTTGTGC+TGG - Chr4:42996479-42996498 MsG0480020534.01.T01:intron 55.0%
! TGTGGGCTGCTACAAAGCAG+CGG - Chr4:42991951-42991970 MsG0480020534.01.T01:three_prime_UTR 55.0%
!! GAGCGGAAGGTTTTAGCACG+TGG - Chr4:42994298-42994317 MsG0480020534.01.T01:intron 55.0%
!! GGCTCGGTGGATCAATCTGA+TGG - Chr4:42996515-42996534 MsG0480020534.01.T01:intron 55.0%
!! GTGCAGATGACGGAGAGAGA+AGG - Chr4:42993196-42993215 MsG0480020534.01.T01:intron 55.0%
!! TAAGGGTTGGTGGGTTTGGG+CGG - Chr4:42994443-42994462 MsG0480020534.01.T01:intron 55.0%
!! TTCTCCTTGGGGCATTGGGA+TGG + Chr4:42992402-42992421 None:intergenic 55.0%
CGTGAGGAACACAGGCAGAC+AGG - Chr4:42993164-42993183 MsG0480020534.01.T01:intron 60.0%
GCCCAAACCCACCAACCCTT+AGG + Chr4:42994444-42994463 None:intergenic 60.0%
GGTCAGTGGGAATGGTCCCT+CGG - Chr4:42995173-42995192 MsG0480020534.01.T01:intron 60.0%
TCTTCGCTGCCATGAGCGGA+AGG - Chr4:42994285-42994304 MsG0480020534.01.T01:intron 60.0%
GGCCCCCTCTAGTGGTCAGT+GGG - Chr4:42995160-42995179 MsG0480020534.01.T01:intron 65.0%
TCGATGGTTTCGCGCGCGTG+AGG - Chr4:42993148-42993167 MsG0480020534.01.T01:intron 65.0%
TTCGCGCGCGTGAGGAACAC+AGG - Chr4:42993156-42993175 MsG0480020534.01.T01:intron 65.0%
GGGCCCCCTCTAGTGGTCAG+TGG - Chr4:42995159-42995178 MsG0480020534.01.T01:intron 70.0%
Chromosome Type Strat End Strand Name
Chr4 gene 42991754 42996989 42991754 ID=MsG0480020534.01;Name=MsG0480020534.01
Chr4 mRNA 42991754 42996989 42991754 ID=MsG0480020534.01.T01;Parent=MsG0480020534.01;Name=MsG0480020534.01.T01;_AED=0.36;_eAED=0.41;_QI=0|0|0.33|1|1|1|3|343|250
Chr4 exon 42991754 42992571 42991754 ID=MsG0480020534.01.T01:exon:5164;Parent=MsG0480020534.01.T01
Chr4 exon 42993566 42993653 42993566 ID=MsG0480020534.01.T01:exon:5163;Parent=MsG0480020534.01.T01
Chr4 exon 42996800 42996989 42996800 ID=MsG0480020534.01.T01:exon:5162;Parent=MsG0480020534.01.T01
Chr4 CDS 42996800 42996989 42996800 ID=MsG0480020534.01.T01:cds;Parent=MsG0480020534.01.T01
Chr4 CDS 42993566 42993653 42993566 ID=MsG0480020534.01.T01:cds;Parent=MsG0480020534.01.T01
Chr4 CDS 42992097 42992571 42992097 ID=MsG0480020534.01.T01:cds;Parent=MsG0480020534.01.T01
Chr4 three_prime_UTR 42991754 42992096 42991754 ID=MsG0480020534.01.T01:three_prime_utr;Parent=MsG0480020534.01.T01
Gene Sequence

>MsG0480020534.01.T01

ATGGAAGAAGACACGCTTTTACTTCAAACATGGCTCAACATTTTGAAGGATCCAGTTGTGGGAATTGACCAAAAAGCTGAAGGTTTTTGGTTAAGAATCAAAGACAACTACAACACCTACCGCAATCAACTTCCAAAGAAGGAATCAGGTCAACTAAAATCTCGATATCACCGATTGAATACACGTGTTACTTTGAACATAAATTGTGGTAATTCCTGTGTTGGGTCAGCTCATATAGAGCTTTGTTTTGACTTCAATTGGGCCCCCTCTAGTGGTCAGGTGATCATGGCATCCTTGTCAGCTGTGAATGTTTCCCCGCTATGCATGATTCAAACTGCAAACCGCAATCAATCAACCATTGCTACCACAGCGAAGTTCCCTTCATCTTTCGGGTCTACAAAGAGTGTTTCCAAATCTTGTGGCTTGAAGTCATCATCTTCATATAGAACAACTGCAATGGCTGCTTACAAGGTCAAGCTTATTGGACCAGATGGAAAAGAGAATGAGTTCGATGCCCCCGATGATGTTTACATCTTAGATGCAGCAGAGGATGCCGGTGTTGAACTCCCTTATTCATGCCGTGCTGGAGCTTGCTCTACTTGTGCTGGAAAGATTGTTTCTGGCTCGGTGGATCAATCTGATGGCTCATTCTTGGATGATAATCAACTTAAGGATGGCTTTGTGCTTACCTGTGTTTCCTATCCAACCGCAGATTGCATAATTGAAACTCACAAGGAAGGTGATCTCTACTGA
Protein sequence

>MsG0480020534.01.T01

MEEDTLLLQTWLNILKDPVVGIDQKAEGFWLRIKDNYNTYRNQLPKKESGQLKSRYHRLNTRVTLNINCGNSCVGSAHIELCFDFNWAPSSGQVIMASLSAVNVSPLCMIQTANRNQSTIATTAKFPSSFGSTKSVSKSCGLKSSSSYRTTAMAAYKVKLIGPDGKENEFDAPDDVYILDAAEDAGVELPYSCRAGACSTCAGKIVSGSVDQSDGSFLDDNQLKDGFVLTCVSYPTADCIIETHKEGDLY*