Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380016460.01.T01 | XP_013461377.1 | 92.063 | 252 | 19 | 1 | 1 | 252 | 1 | 251 | 1.34E-168 | 481 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380016460.01.T01 | P13603 | 92.063 | 252 | 19 | 1 | 1 | 252 | 1 | 251 | 5.08E-171 | 479 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380016460.01.T01 | A0A072V0U2 | 92.063 | 252 | 19 | 1 | 1 | 252 | 1 | 251 | 6.39e-169 | 481 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0180005639.01 | MsG0380016460.01 | -0.801463 | 8.896317e-49 | 4.251242e-46 |
| MsG0280011404.01 | MsG0380016460.01 | -0.818620 | 1.782278e-52 | 1.340761e-49 |
| MsG0380016460.01 | MsG0480018226.01 | -0.801289 | 9.660220e-49 | 4.596099e-46 |
| MsG0380016460.01 | MsG0480019065.01 | -0.809640 | 1.712407e-50 | 1.010884e-47 |
| MsG0380016460.01 | MsG0480020534.01 | 0.801514 | 8.685778e-49 | 4.155973e-46 |
| MsG0380016460.01 | MsG0480020935.01 | 0.816256 | 6.074889e-52 | 4.283366e-49 |
| MsG0380016460.01 | MsG0480023906.01 | -0.811540 | 6.653661e-51 | 4.129797e-48 |
| MsG0380016460.01 | MsG0680035707.01 | -0.814795 | 1.284558e-51 | 8.702569e-49 |
| MsG0380016460.01 | MsG0780036593.01 | -0.806647 | 7.432157e-50 | 4.055253e-47 |
| MsG0380016460.01 | MsG0780036596.01 | -0.817345 | 3.461290e-52 | 2.514219e-49 |
| MsG0380016460.01 | MsG0880046296.01 | -0.813309 | 2.732326e-51 | 1.778060e-48 |
| MsG0280007877.01 | MsG0380016460.01 | -0.805619 | 1.223245e-49 | 6.501632e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380016460.01.T01 | MTR_3g089977 | 92.063 | 252 | 19 | 1 | 1 | 252 | 1 | 251 | 1.62e-172 | 481 |
| MsG0380016460.01.T01 | MTR_3g089940 | 92.460 | 252 | 18 | 1 | 1 | 252 | 1 | 251 | 1.70e-172 | 479 |
| MsG0380016460.01.T01 | MTR_3g089940 | 92.460 | 252 | 18 | 1 | 1 | 252 | 1 | 251 | 3.52e-172 | 479 |
| MsG0380016460.01.T01 | MTR_3g089940 | 92.460 | 252 | 18 | 1 | 1 | 252 | 1 | 251 | 8.50e-172 | 478 |
| MsG0380016460.01.T01 | MTR_3g089940 | 92.460 | 252 | 18 | 1 | 1 | 252 | 1 | 251 | 1.31e-171 | 478 |
| MsG0380016460.01.T01 | MTR_3g089970 | 91.270 | 252 | 20 | 2 | 1 | 251 | 1 | 251 | 1.31e-166 | 466 |
| MsG0380016460.01.T01 | MTR_7g099040 | 62.550 | 251 | 93 | 1 | 2 | 252 | 3 | 252 | 6.78e-111 | 324 |
| MsG0380016460.01.T01 | MTR_1g069430 | 61.847 | 249 | 94 | 1 | 4 | 252 | 3 | 250 | 1.91e-109 | 320 |
| MsG0380016460.01.T01 | MTR_6g068930 | 57.522 | 226 | 92 | 2 | 2 | 227 | 3 | 224 | 2.66e-90 | 272 |
| MsG0380016460.01.T01 | MTR_5g087710 | 47.479 | 238 | 123 | 2 | 7 | 243 | 16 | 252 | 9.44e-76 | 235 |
| MsG0380016460.01.T01 | MTR_7g068330 | 50.196 | 255 | 121 | 5 | 2 | 252 | 6 | 258 | 1.94e-74 | 231 |
| MsG0380016460.01.T01 | MTR_7g068320 | 53.165 | 237 | 106 | 4 | 1 | 233 | 12 | 247 | 7.12e-74 | 230 |
| MsG0380016460.01.T01 | MTR_3g079180 | 46.694 | 242 | 129 | 0 | 2 | 243 | 6 | 247 | 7.25e-72 | 225 |
| MsG0380016460.01.T01 | MTR_3g099460 | 52.697 | 241 | 110 | 3 | 6 | 243 | 13 | 252 | 1.27e-71 | 223 |
| MsG0380016460.01.T01 | MTR_3g099460 | 52.697 | 241 | 110 | 3 | 6 | 243 | 13 | 252 | 7.20e-71 | 223 |
| MsG0380016460.01.T01 | MTR_3g099460 | 51.867 | 241 | 105 | 4 | 6 | 243 | 13 | 245 | 1.73e-67 | 211 |
| MsG0380016460.01.T01 | MTR_3g099460 | 51.867 | 241 | 105 | 4 | 6 | 243 | 13 | 245 | 1.05e-66 | 211 |
| MsG0380016460.01.T01 | MTR_5g045710 | 45.570 | 237 | 123 | 4 | 1 | 236 | 1 | 232 | 1.67e-62 | 201 |
| MsG0380016460.01.T01 | MTR_0001s0660 | 46.121 | 232 | 122 | 3 | 5 | 236 | 4 | 232 | 2.74e-62 | 202 |
| MsG0380016460.01.T01 | MTR_3g099460 | 52.717 | 184 | 85 | 2 | 61 | 243 | 7 | 189 | 7.71e-47 | 159 |
| MsG0380016460.01.T01 | MTR_5g045710 | 44.371 | 151 | 82 | 1 | 86 | 236 | 1 | 149 | 1.02e-34 | 126 |
| MsG0380016460.01.T01 | MTR_3g079170 | 46.575 | 146 | 58 | 2 | 101 | 243 | 25 | 153 | 2.81e-33 | 122 |
| MsG0380016460.01.T01 | MTR_8g095220 | 31.646 | 237 | 149 | 7 | 12 | 239 | 55 | 287 | 7.34e-29 | 111 |
| MsG0380016460.01.T01 | MTR_8g095220 | 31.646 | 237 | 149 | 7 | 12 | 239 | 55 | 287 | 4.63e-28 | 111 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380016460.01.T01 | AT1G77120 | 83.190 | 232 | 39 | 0 | 3 | 234 | 2 | 233 | 2.15e-144 | 409 |
| MsG0380016460.01.T01 | AT5G43940 | 60.643 | 249 | 97 | 1 | 4 | 252 | 3 | 250 | 1.60e-107 | 316 |
| MsG0380016460.01.T01 | AT5G43940 | 57.471 | 261 | 98 | 2 | 4 | 252 | 3 | 262 | 2.12e-103 | 306 |
| MsG0380016460.01.T01 | AT1G64710 | 56.962 | 237 | 99 | 2 | 3 | 236 | 2 | 238 | 5.61e-96 | 286 |
| MsG0380016460.01.T01 | AT5G24760 | 58.772 | 228 | 90 | 2 | 7 | 234 | 12 | 235 | 4.47e-95 | 284 |
| MsG0380016460.01.T01 | AT1G32780 | 52.569 | 253 | 110 | 2 | 1 | 243 | 1 | 253 | 2.32e-91 | 275 |
| MsG0380016460.01.T01 | AT1G64710 | 55.814 | 215 | 92 | 2 | 25 | 236 | 1 | 215 | 3.15e-84 | 256 |
| MsG0380016460.01.T01 | AT5G24760 | 57.143 | 210 | 86 | 2 | 25 | 234 | 1 | 206 | 5.43e-84 | 255 |
| MsG0380016460.01.T01 | AT5G24760 | 57.143 | 210 | 86 | 2 | 25 | 234 | 1 | 206 | 5.43e-84 | 255 |
| MsG0380016460.01.T01 | AT1G22430 | 50.612 | 245 | 119 | 2 | 1 | 243 | 6 | 250 | 3.51e-79 | 241 |
| MsG0380016460.01.T01 | AT1G22430 | 50.612 | 245 | 119 | 2 | 1 | 243 | 6 | 250 | 3.51e-79 | 241 |
| MsG0380016460.01.T01 | AT1G22430 | 50.612 | 245 | 119 | 2 | 1 | 243 | 6 | 250 | 5.91e-79 | 241 |
| MsG0380016460.01.T01 | AT1G22430 | 50.612 | 245 | 119 | 2 | 1 | 243 | 6 | 250 | 5.81e-78 | 241 |
| MsG0380016460.01.T01 | AT1G22430 | 50.612 | 245 | 119 | 2 | 1 | 243 | 6 | 250 | 5.81e-78 | 241 |
| MsG0380016460.01.T01 | AT5G42250 | 51.092 | 229 | 111 | 1 | 9 | 236 | 17 | 245 | 1.98e-77 | 239 |
| MsG0380016460.01.T01 | AT1G22440 | 52.209 | 249 | 107 | 5 | 2 | 243 | 5 | 248 | 4.20e-77 | 238 |
| MsG0380016460.01.T01 | AT4G22110 | 51.029 | 243 | 111 | 3 | 6 | 243 | 12 | 251 | 4.50e-76 | 232 |
| MsG0380016460.01.T01 | AT4G22110 | 51.029 | 243 | 111 | 3 | 6 | 243 | 12 | 251 | 1.44e-74 | 232 |
| MsG0380016460.01.T01 | AT4G22110 | 51.029 | 243 | 111 | 3 | 6 | 243 | 12 | 251 | 1.44e-74 | 232 |
| MsG0380016460.01.T01 | AT1G64710 | 56.098 | 164 | 70 | 1 | 75 | 236 | 6 | 169 | 1.24e-61 | 196 |
| MsG0380016460.01.T01 | AT5G24760 | 53.279 | 122 | 56 | 1 | 113 | 234 | 1 | 121 | 6.12e-41 | 142 |
| MsG0380016460.01.T01 | AT5G63620 | 29.958 | 237 | 153 | 8 | 12 | 239 | 57 | 289 | 4.10e-26 | 104 |
| MsG0380016460.01.T01 | AT5G63620 | 29.958 | 237 | 153 | 8 | 12 | 239 | 57 | 289 | 1.97e-25 | 103 |
| MsG0380016460.01.T01 | AT5G63620 | 29.958 | 237 | 153 | 8 | 12 | 239 | 57 | 289 | 2.07e-25 | 103 |
Find 89 sgRNAs with CRISPR-Local
Find 139 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCATTGTTTCCTAGAATATT+TGG | 0.189532 | 3:+83840262 | MsG0380016460.01.T01:CDS |
| GGTTCATCTGTTGCTATCTT+TGG | 0.236969 | 3:+83840860 | MsG0380016460.01.T01:CDS |
| GTTTCCAGCCGATTTGAATT+AGG | 0.266295 | 3:+83841082 | MsG0380016460.01.T01:CDS |
| GTCACACTGATGTTTACTTC+TGG | 0.274790 | 3:+83839748 | MsG0380016460.01.T01:CDS |
| GCAACAGATGAACCGGGTTT+TGG | 0.302998 | 3:-83840851 | None:intergenic |
| GCTTCATGACCAAATATTCT+AGG | 0.304788 | 3:-83840271 | None:intergenic |
| GCAACATGTGCGATCTTCTT+AGG | 0.308863 | 3:+83840516 | MsG0380016460.01.T01:CDS |
| TCAGTCAAGATTCTCTATTA+AGG | 0.310729 | 3:+83840574 | MsG0380016460.01.T01:CDS |
| ATCTTTGGACTTGGAGCTGT+TGG | 0.351212 | 3:+83840875 | MsG0380016460.01.T01:CDS |
| ACTTTGTCAAGTGGTGCATC+AGG | 0.352356 | 3:-83840680 | None:intergenic |
| ACGAATCTTCAAGAATTTGT+TGG | 0.366783 | 3:-83841122 | None:intergenic |
| GCTGCGGTTGCATGGGAGGC+GGG | 0.399452 | 3:+83839642 | MsG0380016460.01.T01:intron |
| TCACACTGATGTTTACTTCT+GGG | 0.404127 | 3:+83839749 | MsG0380016460.01.T01:CDS |
| GGCGGGGAAGCCACTGGTGA+TGG | 0.404743 | 3:+83839659 | MsG0380016460.01.T01:CDS |
| AAAGATAGCAACAGATGAAC+CGG | 0.416086 | 3:-83840858 | None:intergenic |
| TGGAACCAGCTGCGGTTGCA+TGG | 0.416145 | 3:+83839634 | MsG0380016460.01.T01:intron |
| TCTGTTGCTATCTTTGGACT+TGG | 0.419387 | 3:+83840866 | MsG0380016460.01.T01:CDS |
| CAGTCAAGATTCTCTATTAA+GGG | 0.430904 | 3:+83840575 | MsG0380016460.01.T01:CDS |
| TATGTCGAACACTGCTGGTC+AGG | 0.435315 | 3:+83839447 | MsG0380016460.01.T01:exon |
| AGCTGCGGTTGCATGGGAGG+CGG | 0.441799 | 3:+83839641 | MsG0380016460.01.T01:intron |
| CCAGTGTTCACAGGGGAGTG+TGG | 0.446920 | 3:+83840464 | MsG0380016460.01.T01:CDS |
| ACTCCCCTGTGAACACTGGC+AGG | 0.449227 | 3:-83840460 | None:intergenic |
| GCTGAAGGGGCAAGGATGTC+CGG | 0.456856 | 3:+83841031 | MsG0380016460.01.T01:CDS |
| TCCGGTGCATCAAGAATCAT+TGG | 0.459319 | 3:+83841049 | MsG0380016460.01.T01:CDS |
| AGAATATTTGGTCATGAAGC+TGG | 0.461626 | 3:+83840274 | MsG0380016460.01.T01:CDS |
| GTTGATCTTTGCAACACATC+CGG | 0.462591 | 3:-83840657 | None:intergenic |
| ACTGGCAGGGCATGATCCCC+TGG | 0.467690 | 3:-83840446 | None:intergenic |
| TGTACCTAATTCAAATCGGC+TGG | 0.473734 | 3:-83841086 | None:intergenic |
| CATGCCCTGCCAGTGTTCAC+AGG | 0.477691 | 3:+83840455 | MsG0380016460.01.T01:CDS |
| ACCAGCTGCGGTTGCATGGG+AGG | 0.486050 | 3:+83839638 | MsG0380016460.01.T01:intron |
| ATGGGAGGCGGGGAAGCCAC+TGG | 0.486618 | 3:+83839653 | MsG0380016460.01.T01:CDS |
| ACCAAAATTTAGGCTGCTGA+AGG | 0.497900 | 3:+83841016 | MsG0380016460.01.T01:intron |
| TTCTTAGGATCAACACGGAC+AGG | 0.502318 | 3:+83840531 | MsG0380016460.01.T01:CDS |
| GGAACCAGCTGCGGTTGCAT+GGG | 0.505012 | 3:+83839635 | MsG0380016460.01.T01:intron |
| TCCAATGATTCTTGATGCAC+CGG | 0.509781 | 3:-83841050 | None:intergenic |
| CCAAAATTTAGGCTGCTGAA+GGG | 0.515926 | 3:+83841017 | MsG0380016460.01.T01:intron |
| GCATTGTACCTAATTCAAAT+CGG | 0.523873 | 3:-83841090 | None:intergenic |
| TGTACCGACGAAATGATGAA+TGG | 0.525458 | 3:-83840603 | None:intergenic |
| CAGTGTTCACAGGGGAGTGT+GGG | 0.526107 | 3:+83840465 | MsG0380016460.01.T01:CDS |
| CTCTCCTCTGACTTACAATG+TGG | 0.529398 | 3:-83840494 | None:intergenic |
| CTGCGGTTGCATGGGAGGCG+GGG | 0.533283 | 3:+83839643 | MsG0380016460.01.T01:CDS |
| CCAAATATTCTAGGAAACAA+TGG | 0.540108 | 3:-83840262 | None:intergenic |
| CTCAGCTGTGGAATATGCAC+AGG | 0.542001 | 3:+83840710 | MsG0380016460.01.T01:CDS |
| TGTTTACTTCTGGGAAGCTA+AGG | 0.543162 | 3:+83839758 | MsG0380016460.01.T01:CDS |
| AGACGGACTTCACCGGCTTG+TGG | 0.546092 | 3:-83839702 | None:intergenic |
| TTAACTATGTCGAACACTGC+TGG | 0.546246 | 3:+83839442 | MsG0380016460.01.T01:exon |
| CACAATGTTGATCAGGATTG+TGG | 0.548924 | 3:+83840391 | MsG0380016460.01.T01:intron |
| CCACACTCCCCTGTGAACAC+TGG | 0.550623 | 3:-83840464 | None:intergenic |
| AGTAAACATCAGTGTGACAA+AGG | 0.551878 | 3:-83839743 | None:intergenic |
| AAAGTTTGTATTCTCAGCTG+TGG | 0.560671 | 3:+83840698 | MsG0380016460.01.T01:CDS |
| TATCTTGAGACGGACTTCAC+CGG | 0.564597 | 3:-83839709 | None:intergenic |
| ATGCCCTGCCAGTGTTCACA+GGG | 0.569963 | 3:+83840456 | MsG0380016460.01.T01:CDS |
| GTAAACATCAGTGTGACAAA+GGG | 0.577816 | 3:-83839742 | None:intergenic |
| GTGTGACTAATCTGAAACCA+GGG | 0.577827 | 3:+83840429 | MsG0380016460.01.T01:CDS |
| CAAAATTTAGGCTGCTGAAG+GGG | 0.579040 | 3:+83841018 | MsG0380016460.01.T01:intron |
| CAACCCATTCATCATTTCGT+CGG | 0.585986 | 3:+83840599 | MsG0380016460.01.T01:CDS |
| GAGTACACTGTGGTTCATGC+CGG | 0.586769 | 3:+83840638 | MsG0380016460.01.T01:CDS |
| TTTAGGCTGCTGAAGGGGCA+AGG | 0.589857 | 3:+83841023 | MsG0380016460.01.T01:intron |
| GGTGTGACTAATCTGAAACC+AGG | 0.590607 | 3:+83840428 | MsG0380016460.01.T01:CDS |
| GATTGTGGAGAGTGTAGGTG+AGG | 0.592687 | 3:+83840406 | MsG0380016460.01.T01:CDS |
| CTTTGTCAAGTGGTGCATCA+GGG | 0.593942 | 3:-83840679 | None:intergenic |
| TCTTAGGATCAACACGGACA+GGG | 0.595918 | 3:+83840532 | MsG0380016460.01.T01:CDS |
| AGAATACAAACTTTGTCAAG+TGG | 0.596408 | 3:-83840689 | None:intergenic |
| GTACCGACGAAATGATGAAT+GGG | 0.600917 | 3:-83840602 | None:intergenic |
| GAGGTGGCGCCACCACAAGC+CGG | 0.602446 | 3:+83839690 | MsG0380016460.01.T01:CDS |
| ACTGGTGATGGAAGAAGTAG+AGG | 0.612676 | 3:+83839671 | MsG0380016460.01.T01:CDS |
| TAGCAAAGCAAACAAACGTA+CGG | 0.613057 | 3:+83839419 | MsG0380016460.01.T01:five_prime_UTR |
| ACTTGGAGCTGTTGGCCTTG+CGG | 0.616948 | 3:+83840883 | MsG0380016460.01.T01:CDS |
| TCTACTTCTTCCATCACCAG+TGG | 0.617716 | 3:-83839669 | None:intergenic |
| CGGACTTCACCGGCTTGTGG+TGG | 0.618100 | 3:-83839699 | None:intergenic |
| CTCCCCTGTGAACACTGGCA+GGG | 0.622511 | 3:-83840459 | None:intergenic |
| TCTCCTCTGACTTACAATGT+GGG | 0.629740 | 3:-83840493 | None:intergenic |
| ATATTTGGTCATGAAGCTGG+AGG | 0.631481 | 3:+83840277 | MsG0380016460.01.T01:CDS |
| AGTGTTCACAGGGGAGTGTG+GGG | 0.635095 | 3:+83840466 | MsG0380016460.01.T01:CDS |
| ATGCCCACATTGTAAGTCAG+AGG | 0.639191 | 3:+83840490 | MsG0380016460.01.T01:CDS |
| AACATCAGTGTGACAAAGGG+AGG | 0.641785 | 3:-83839739 | None:intergenic |
| AGGTGAAGAGTATCTTGAGA+CGG | 0.642729 | 3:-83839719 | None:intergenic |
| ATCAGGATTGTGGAGAGTGT+AGG | 0.653420 | 3:+83840401 | MsG0380016460.01.T01:intron |
| TATTTGGTCATGAAGCTGGA+GGG | 0.656045 | 3:+83840278 | MsG0380016460.01.T01:CDS |
| ATTGTGGAGAGTGTAGGTGA+GGG | 0.662015 | 3:+83840407 | MsG0380016460.01.T01:CDS |
| CTTAGGATCAACACGGACAG+GGG | 0.662424 | 3:+83840533 | MsG0380016460.01.T01:CDS |
| AAGATAGCAACAGATGAACC+GGG | 0.667433 | 3:-83840857 | None:intergenic |
| GGTGATGGAAGAAGTAGAGG+TGG | 0.673070 | 3:+83839674 | MsG0380016460.01.T01:CDS |
| GGTCAGGTCATCAAGTGCAG+AGG | 0.674142 | 3:+83839463 | MsG0380016460.01.T01:CDS |
| CGATCTTCTTAGGATCAACA+CGG | 0.675509 | 3:+83840526 | MsG0380016460.01.T01:CDS |
| AATGTTGCTAAACCAAAACC+CGG | 0.696734 | 3:+83840839 | MsG0380016460.01.T01:CDS |
| TGTGACTAATCTGAAACCAG+GGG | 0.722750 | 3:+83840430 | MsG0380016460.01.T01:CDS |
| TGCCCTGCCAGTGTTCACAG+GGG | 0.747042 | 3:+83840457 | MsG0380016460.01.T01:CDS |
| TACATTCAGCGAGTACACTG+TGG | 0.749330 | 3:+83840628 | MsG0380016460.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATATTAATATCTAAACAT+CGG | - | Chr3:83840747-83840766 | None:intergenic | 10.0% |
| !! | AGATATTAATATATGTTTCT+AGG | + | Chr3:83840753-83840772 | MsG0380016460.01.T01:intron | 15.0% |
| !! | ATAGAAACAAAATGAAAAAA+AGG | - | Chr3:83839500-83839519 | None:intergenic | 15.0% |
| !! | TTGTGAATTGAAAATATTAT+CGG | + | Chr3:83840952-83840971 | MsG0380016460.01.T01:intron | 15.0% |
| !!! | TTTCATTTTGTTTCTATTTT+TGG | + | Chr3:83839503-83839522 | MsG0380016460.01.T01:intron | 15.0% |
| !!! | TTTGCTTTTGAATTTTTAAA+AGG | + | Chr3:83840168-83840187 | MsG0380016460.01.T01:intron | 15.0% |
| !! | AATTTATGTAAACTTCTTCT+CGG | + | Chr3:83840109-83840128 | MsG0380016460.01.T01:intron | 20.0% |
| !! | GCAAATTCTTTATATGAATT+TGG | - | Chr3:83840042-83840061 | None:intergenic | 20.0% |
| !! | TAAATATTCATAGGTTTACT+AGG | + | Chr3:83839927-83839946 | MsG0380016460.01.T01:intron | 20.0% |
| !! | TATCGTGAATAAATATTCAT+AGG | + | Chr3:83839918-83839937 | MsG0380016460.01.T01:intron | 20.0% |
| !! | TTCTCTTTAAACCAAAATTT+AGG | + | Chr3:83841006-83841025 | MsG0380016460.01.T01:intron | 20.0% |
| !!! | TGAGTTTTATTGATAATTGT+TGG | + | Chr3:83840368-83840387 | MsG0380016460.01.T01:intron | 20.0% |
| !!! | TGTTTCTATTTTTGGAATTT+GGG | + | Chr3:83839511-83839530 | MsG0380016460.01.T01:intron | 20.0% |
| !!! | TTGGTAGTAATTTTGTAATT+AGG | - | Chr3:83839954-83839973 | None:intergenic | 20.0% |
| !!! | TTGTTTCTATTTTTGGAATT+TGG | + | Chr3:83839510-83839529 | MsG0380016460.01.T01:intron | 20.0% |
| ! | ATTTATGTAAACTTCTTCTC+GGG | + | Chr3:83840110-83840129 | MsG0380016460.01.T01:intron | 25.0% |
| ! | GAAACAAAATGAAAAAAAGG+AGG | - | Chr3:83839497-83839516 | None:intergenic | 25.0% |
| !! | ATTAAGTTGTTGTATGTATG+TGG | - | Chr3:83839595-83839614 | None:intergenic | 25.0% |
| AAAACCACTCAAATTGTTCA+GGG | + | Chr3:83839998-83840017 | MsG0380016460.01.T01:intron | 30.0% | |
| AAATGAAAAAAAGGAGGAGA+TGG | - | Chr3:83839491-83839510 | None:intergenic | 30.0% | |
| ACGAATCTTCAAGAATTTGT+TGG | - | Chr3:83841125-83841144 | None:intergenic | 30.0% | |
| AGAAGAGTAGGAGTTAATAT+TGG | - | Chr3:83840990-83841009 | None:intergenic | 30.0% | |
| AGAATACAAACTTTGTCAAG+TGG | - | Chr3:83840692-83840711 | None:intergenic | 30.0% | |
| ATCAAAATGTGACAACTTCT+AGG | - | Chr3:83839864-83839883 | None:intergenic | 30.0% | |
| CAGTCAAGATTCTCTATTAA+GGG | + | Chr3:83840575-83840594 | MsG0380016460.01.T01:CDS | 30.0% | |
| CCATTGTTTCCTAGAATATT+TGG | + | Chr3:83840262-83840281 | MsG0380016460.01.T01:CDS | 30.0% | |
| GCATTGTACCTAATTCAAAT+CGG | - | Chr3:83841093-83841112 | None:intergenic | 30.0% | |
| GTGCATTGCAAAAGTTTATA+TGG | + | Chr3:83840206-83840225 | MsG0380016460.01.T01:intron | 30.0% | |
| TAAAACCACTCAAATTGTTC+AGG | + | Chr3:83839997-83840016 | MsG0380016460.01.T01:intron | 30.0% | |
| TCAGTCAAGATTCTCTATTA+AGG | + | Chr3:83840574-83840593 | MsG0380016460.01.T01:CDS | 30.0% | |
| ! | CCAAATATTCTAGGAAACAA+TGG | - | Chr3:83840265-83840284 | None:intergenic | 30.0% |
| ! | TTTGGTTTAAAGAGAAGAGT+AGG | - | Chr3:83841002-83841021 | None:intergenic | 30.0% |
| !! | GTTAGAACATATTAGCTTGT+TGG | + | Chr3:83840143-83840162 | MsG0380016460.01.T01:intron | 30.0% |
| !!! | GTTCTCTGAAATTTTATGCT+TGG | - | Chr3:83839973-83839992 | None:intergenic | 30.0% |
| !!! | TTTTGGTTTAGCAACATTGA+TGG | - | Chr3:83840837-83840856 | None:intergenic | 30.0% |
| AAACCACTCAAATTGTTCAG+GGG | + | Chr3:83839999-83840018 | MsG0380016460.01.T01:intron | 35.0% | |
| AAAGATAGCAACAGATGAAC+CGG | - | Chr3:83840861-83840880 | None:intergenic | 35.0% | |
| AAAGTTTGTATTCTCAGCTG+TGG | + | Chr3:83840698-83840717 | MsG0380016460.01.T01:CDS | 35.0% | |
| AATGTTGCTAAACCAAAACC+CGG | + | Chr3:83840839-83840858 | MsG0380016460.01.T01:CDS | 35.0% | |
| AGAATATTTGGTCATGAAGC+TGG | + | Chr3:83840274-83840293 | MsG0380016460.01.T01:CDS | 35.0% | |
| AGTAAACATCAGTGTGACAA+AGG | - | Chr3:83839746-83839765 | None:intergenic | 35.0% | |
| ATTTGCTTCCATGCTTCTAT+AGG | + | Chr3:83840800-83840819 | MsG0380016460.01.T01:intron | 35.0% | |
| GCATGGAAGCAAATTGAATT+AGG | - | Chr3:83840794-83840813 | None:intergenic | 35.0% | |
| GCTTCATGACCAAATATTCT+AGG | - | Chr3:83840274-83840293 | None:intergenic | 35.0% | |
| GTAAACATCAGTGTGACAAA+GGG | - | Chr3:83839745-83839764 | None:intergenic | 35.0% | |
| TAGCAAAGCAAACAAACGTA+CGG | + | Chr3:83839419-83839438 | MsG0380016460.01.T01:five_prime_UTR | 35.0% | |
| TCACACTGATGTTTACTTCT+GGG | + | Chr3:83839749-83839768 | MsG0380016460.01.T01:CDS | 35.0% | |
| TGGTTCCAAAACACAATCAA+GGG | - | Chr3:83839622-83839641 | None:intergenic | 35.0% | |
| ! | TGAATCCCTTGATTGTGTTT+TGG | + | Chr3:83839614-83839633 | MsG0380016460.01.T01:intron | 35.0% |
| AACAAGCGTATACACACTCA+AGG | - | Chr3:83840924-83840943 | None:intergenic | 40.0% | |
| AAGATAGCAACAGATGAACC+GGG | - | Chr3:83840860-83840879 | None:intergenic | 40.0% | |
| ACCAAAATTTAGGCTGCTGA+AGG | + | Chr3:83841016-83841035 | MsG0380016460.01.T01:intron | 40.0% | |
| ATAGACAGAAAATGTGCGTG+TGG | - | Chr3:83839799-83839818 | None:intergenic | 40.0% | |
| ATATTTGGTCATGAAGCTGG+AGG | + | Chr3:83840277-83840296 | MsG0380016460.01.T01:CDS | 40.0% | |
| CAAAATTTAGGCTGCTGAAG+GGG | + | Chr3:83841018-83841037 | MsG0380016460.01.T01:intron | 40.0% | |
| CAACCCATTCATCATTTCGT+CGG | + | Chr3:83840599-83840618 | MsG0380016460.01.T01:CDS | 40.0% | |
| CACAATGTTGATCAGGATTG+TGG | + | Chr3:83840391-83840410 | MsG0380016460.01.T01:intron | 40.0% | |
| CCAAAATTTAGGCTGCTGAA+GGG | + | Chr3:83841017-83841036 | MsG0380016460.01.T01:intron | 40.0% | |
| CGATCTTCTTAGGATCAACA+CGG | + | Chr3:83840526-83840545 | MsG0380016460.01.T01:CDS | 40.0% | |
| CTGGTTCCAAAACACAATCA+AGG | - | Chr3:83839623-83839642 | None:intergenic | 40.0% | |
| GGTTCATCTGTTGCTATCTT+TGG | + | Chr3:83840860-83840879 | MsG0380016460.01.T01:CDS | 40.0% | |
| GTCACACTGATGTTTACTTC+TGG | + | Chr3:83839748-83839767 | MsG0380016460.01.T01:CDS | 40.0% | |
| GTTGATCTTTGCAACACATC+CGG | - | Chr3:83840660-83840679 | None:intergenic | 40.0% | |
| TACAAGAGTAACATACCGCA+AGG | - | Chr3:83840901-83840920 | None:intergenic | 40.0% | |
| TATTTGGTCATGAAGCTGGA+GGG | + | Chr3:83840278-83840297 | MsG0380016460.01.T01:CDS | 40.0% | |
| TCCAATGATTCTTGATGCAC+CGG | - | Chr3:83841053-83841072 | None:intergenic | 40.0% | |
| TCTCCTCTGACTTACAATGT+GGG | - | Chr3:83840496-83840515 | None:intergenic | 40.0% | |
| TCTGTTGCTATCTTTGGACT+TGG | + | Chr3:83840866-83840885 | MsG0380016460.01.T01:CDS | 40.0% | |
| TGTACCTAATTCAAATCGGC+TGG | - | Chr3:83841089-83841108 | None:intergenic | 40.0% | |
| TGTGGAATATGCACAGGTAT+AGG | + | Chr3:83840716-83840735 | MsG0380016460.01.T01:intron | 40.0% | |
| TTAACTATGTCGAACACTGC+TGG | + | Chr3:83839442-83839461 | MsG0380016460.01.T01:exon | 40.0% | |
| TTCCATGCTTCTATAGGTCT+TGG | + | Chr3:83840806-83840825 | MsG0380016460.01.T01:intron | 40.0% | |
| TTGTTGGCACAATGTTGATC+AGG | + | Chr3:83840384-83840403 | MsG0380016460.01.T01:intron | 40.0% | |
| ! | GTACCGACGAAATGATGAAT+GGG | - | Chr3:83840605-83840624 | None:intergenic | 40.0% |
| ! | GTGTGACTAATCTGAAACCA+GGG | + | Chr3:83840429-83840448 | MsG0380016460.01.T01:CDS | 40.0% |
| ! | TGTACCGACGAAATGATGAA+TGG | - | Chr3:83840606-83840625 | None:intergenic | 40.0% |
| ! | TGTGACTAATCTGAAACCAG+GGG | + | Chr3:83840430-83840449 | MsG0380016460.01.T01:CDS | 40.0% |
| ! | TGTTTACTTCTGGGAAGCTA+AGG | + | Chr3:83839758-83839777 | MsG0380016460.01.T01:CDS | 40.0% |
| !! | AGGTGAAGAGTATCTTGAGA+CGG | - | Chr3:83839722-83839741 | None:intergenic | 40.0% |
| !! | GTTTCCAGCCGATTTGAATT+AGG | + | Chr3:83841082-83841101 | MsG0380016460.01.T01:CDS | 40.0% |
| AACATCAGTGTGACAAAGGG+AGG | - | Chr3:83839742-83839761 | None:intergenic | 45.0% | |
| ACTCCCCTGAACAATTTGAG+TGG | - | Chr3:83840005-83840024 | None:intergenic | 45.0% | |
| ACTTTGTCAAGTGGTGCATC+AGG | - | Chr3:83840683-83840702 | None:intergenic | 45.0% | |
| ATCTTTGGACTTGGAGCTGT+TGG | + | Chr3:83840875-83840894 | MsG0380016460.01.T01:CDS | 45.0% | |
| ATGCCCACATTGTAAGTCAG+AGG | + | Chr3:83840490-83840509 | MsG0380016460.01.T01:CDS | 45.0% | |
| CACCAAGACCTATAGAAGCA+TGG | - | Chr3:83840811-83840830 | None:intergenic | 45.0% | |
| CTCTCCTCTGACTTACAATG+TGG | - | Chr3:83840497-83840516 | None:intergenic | 45.0% | |
| CTTTGTCAAGTGGTGCATCA+GGG | - | Chr3:83840682-83840701 | None:intergenic | 45.0% | |
| GCAACATGTGCGATCTTCTT+AGG | + | Chr3:83840516-83840535 | MsG0380016460.01.T01:CDS | 45.0% | |
| TACATTCAGCGAGTACACTG+TGG | + | Chr3:83840628-83840647 | MsG0380016460.01.T01:CDS | 45.0% | |
| TCCGGTGCATCAAGAATCAT+TGG | + | Chr3:83841049-83841068 | MsG0380016460.01.T01:CDS | 45.0% | |
| TCTACTTCTTCCATCACCAG+TGG | - | Chr3:83839672-83839691 | None:intergenic | 45.0% | |
| TCTTAGGATCAACACGGACA+GGG | + | Chr3:83840532-83840551 | MsG0380016460.01.T01:CDS | 45.0% | |
| TTCTTAGGATCAACACGGAC+AGG | + | Chr3:83840531-83840550 | MsG0380016460.01.T01:CDS | 45.0% | |
| ! | ATCAGGATTGTGGAGAGTGT+AGG | + | Chr3:83840401-83840420 | MsG0380016460.01.T01:intron | 45.0% |
| ! | ATTGTGGAGAGTGTAGGTGA+GGG | + | Chr3:83840407-83840426 | MsG0380016460.01.T01:CDS | 45.0% |
| ! | CCCTTCAGCAGCCTAAATTT+TGG | - | Chr3:83841020-83841039 | None:intergenic | 45.0% |
| ! | GGTGTGACTAATCTGAAACC+AGG | + | Chr3:83840428-83840447 | MsG0380016460.01.T01:CDS | 45.0% |
| ! | TATCTTGAGACGGACTTCAC+CGG | - | Chr3:83839712-83839731 | None:intergenic | 45.0% |
| !! | ACTGGTGATGGAAGAAGTAG+AGG | + | Chr3:83839671-83839690 | MsG0380016460.01.T01:CDS | 45.0% |
| !!! | TCTTGTTTTCCCCTGTTGCA+GGG | + | Chr3:83840232-83840251 | MsG0380016460.01.T01:intron | 45.0% |
| !!! | TTCTTGTTTTCCCCTGTTGC+AGG | + | Chr3:83840231-83840250 | MsG0380016460.01.T01:intron | 45.0% |
| !!! | TTGTGTTTTGGAACCAGCTG+CGG | + | Chr3:83839626-83839645 | MsG0380016460.01.T01:intron | 45.0% |
| CTCAGCTGTGGAATATGCAC+AGG | + | Chr3:83840710-83840729 | MsG0380016460.01.T01:CDS | 50.0% | |
| CTTAGGATCAACACGGACAG+GGG | + | Chr3:83840533-83840552 | MsG0380016460.01.T01:CDS | 50.0% | |
| GAGTACACTGTGGTTCATGC+CGG | + | Chr3:83840638-83840657 | MsG0380016460.01.T01:CDS | 50.0% | |
| TATGTCGAACACTGCTGGTC+AGG | + | Chr3:83839447-83839466 | MsG0380016460.01.T01:exon | 50.0% | |
| ! | GATTGTGGAGAGTGTAGGTG+AGG | + | Chr3:83840406-83840425 | MsG0380016460.01.T01:CDS | 50.0% |
| ! | GCAACAGATGAACCGGGTTT+TGG | - | Chr3:83840854-83840873 | None:intergenic | 50.0% |
| !! | GGTGATGGAAGAAGTAGAGG+TGG | + | Chr3:83839674-83839693 | MsG0380016460.01.T01:CDS | 50.0% |
| ATGCCCTGCCAGTGTTCACA+GGG | + | Chr3:83840456-83840475 | MsG0380016460.01.T01:CDS | 55.0% | |
| ATGGAGTCTGACCCTGCAAC+AGG | - | Chr3:83840246-83840265 | None:intergenic | 55.0% | |
| GGTCAGGTCATCAAGTGCAG+AGG | + | Chr3:83839463-83839482 | MsG0380016460.01.T01:CDS | 55.0% | |
| TGGAGTCTGACCCTGCAACA+GGG | - | Chr3:83840245-83840264 | None:intergenic | 55.0% | |
| TTTAGGCTGCTGAAGGGGCA+AGG | + | Chr3:83841023-83841042 | MsG0380016460.01.T01:intron | 55.0% | |
| ! | AGTGTTCACAGGGGAGTGTG+GGG | + | Chr3:83840466-83840485 | MsG0380016460.01.T01:CDS | 55.0% |
| ! | CAGTGTTCACAGGGGAGTGT+GGG | + | Chr3:83840465-83840484 | MsG0380016460.01.T01:CDS | 55.0% |
| !! | ACTTGGAGCTGTTGGCCTTG+CGG | + | Chr3:83840883-83840902 | MsG0380016460.01.T01:CDS | 55.0% |
| ACTCCCCTGTGAACACTGGC+AGG | - | Chr3:83840463-83840482 | None:intergenic | 60.0% | |
| CATGCCCTGCCAGTGTTCAC+AGG | + | Chr3:83840455-83840474 | MsG0380016460.01.T01:CDS | 60.0% | |
| CCACACTCCCCTGTGAACAC+TGG | - | Chr3:83840467-83840486 | None:intergenic | 60.0% | |
| CCAGTGTTCACAGGGGAGTG+TGG | + | Chr3:83840464-83840483 | MsG0380016460.01.T01:CDS | 60.0% | |
| CTCCCCTGTGAACACTGGCA+GGG | - | Chr3:83840462-83840481 | None:intergenic | 60.0% | |
| GCTGAAGGGGCAAGGATGTC+CGG | + | Chr3:83841031-83841050 | MsG0380016460.01.T01:CDS | 60.0% | |
| GGAACCAGCTGCGGTTGCAT+GGG | + | Chr3:83839635-83839654 | MsG0380016460.01.T01:intron | 60.0% | |
| GGAGTCTGACCCTGCAACAG+GGG | - | Chr3:83840244-83840263 | None:intergenic | 60.0% | |
| TGCCCTGCCAGTGTTCACAG+GGG | + | Chr3:83840457-83840476 | MsG0380016460.01.T01:CDS | 60.0% | |
| TGGAACCAGCTGCGGTTGCA+TGG | + | Chr3:83839634-83839653 | MsG0380016460.01.T01:intron | 60.0% | |
| !! | AGACGGACTTCACCGGCTTG+TGG | - | Chr3:83839705-83839724 | None:intergenic | 60.0% |
| ACCAGCTGCGGTTGCATGGG+AGG | + | Chr3:83839638-83839657 | MsG0380016460.01.T01:intron | 65.0% | |
| ACTGGCAGGGCATGATCCCC+TGG | - | Chr3:83840449-83840468 | None:intergenic | 65.0% | |
| AGCTGCGGTTGCATGGGAGG+CGG | + | Chr3:83839641-83839660 | MsG0380016460.01.T01:intron | 65.0% | |
| !! | CGGACTTCACCGGCTTGTGG+TGG | - | Chr3:83839702-83839721 | None:intergenic | 65.0% |
| ATGGGAGGCGGGGAAGCCAC+TGG | + | Chr3:83839653-83839672 | MsG0380016460.01.T01:CDS | 70.0% | |
| CTGCGGTTGCATGGGAGGCG+GGG | + | Chr3:83839643-83839662 | MsG0380016460.01.T01:CDS | 70.0% | |
| GAGGTGGCGCCACCACAAGC+CGG | + | Chr3:83839690-83839709 | MsG0380016460.01.T01:CDS | 70.0% | |
| GCCTCCCATGCAACCGCAGC+TGG | - | Chr3:83839642-83839661 | None:intergenic | 70.0% | |
| GCTGCGGTTGCATGGGAGGC+GGG | + | Chr3:83839642-83839661 | MsG0380016460.01.T01:intron | 70.0% | |
| GGCGGGGAAGCCACTGGTGA+TGG | + | Chr3:83839659-83839678 | MsG0380016460.01.T01:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr3 | gene | 83839412 | 83841165 | 83839412 | ID=MsG0380016460.01;Name=MsG0380016460.01 |
| Chr3 | mRNA | 83839412 | 83841165 | 83839412 | ID=MsG0380016460.01.T01;Parent=MsG0380016460.01;Name=MsG0380016460.01.T01;_AED=0.49;_eAED=0.49;_QI=36|1|0.83|1|1|1|6|0|255 |
| Chr3 | exon | 83839412 | 83839484 | 83839412 | ID=MsG0380016460.01.T01:exon:11124;Parent=MsG0380016460.01.T01 |
| Chr3 | exon | 83839643 | 83839779 | 83839643 | ID=MsG0380016460.01.T01:exon:11125;Parent=MsG0380016460.01.T01 |
| Chr3 | exon | 83840253 | 83840299 | 83840253 | ID=MsG0380016460.01.T01:exon:11126;Parent=MsG0380016460.01.T01 |
| Chr3 | exon | 83840406 | 83840731 | 83840406 | ID=MsG0380016460.01.T01:exon:11127;Parent=MsG0380016460.01.T01 |
| Chr3 | exon | 83840822 | 83840904 | 83840822 | ID=MsG0380016460.01.T01:exon:11128;Parent=MsG0380016460.01.T01 |
| Chr3 | exon | 83841028 | 83841165 | 83841028 | ID=MsG0380016460.01.T01:exon:11129;Parent=MsG0380016460.01.T01 |
| Chr3 | five_prime_UTR | 83839412 | 83839447 | 83839412 | ID=MsG0380016460.01.T01:five_prime_utr;Parent=MsG0380016460.01.T01 |
| Chr3 | CDS | 83839448 | 83839484 | 83839448 | ID=MsG0380016460.01.T01:cds;Parent=MsG0380016460.01.T01 |
| Chr3 | CDS | 83839643 | 83839779 | 83839643 | ID=MsG0380016460.01.T01:cds;Parent=MsG0380016460.01.T01 |
| Chr3 | CDS | 83840253 | 83840299 | 83840253 | ID=MsG0380016460.01.T01:cds;Parent=MsG0380016460.01.T01 |
| Chr3 | CDS | 83840406 | 83840731 | 83840406 | ID=MsG0380016460.01.T01:cds;Parent=MsG0380016460.01.T01 |
| Chr3 | CDS | 83840822 | 83840904 | 83840822 | ID=MsG0380016460.01.T01:cds;Parent=MsG0380016460.01.T01 |
| Chr3 | CDS | 83841028 | 83841165 | 83841028 | ID=MsG0380016460.01.T01:cds;Parent=MsG0380016460.01.T01 |
| Gene Sequence |
| Protein sequence |
