Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480020811.01.T01 | XP_003606402.1 | 61.804 | 377 | 86 | 9 | 1 | 324 | 19 | 390 | 5.73E-137 | 404 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480020811.01.T01 | G7JPE4 | 61.804 | 377 | 86 | 9 | 1 | 324 | 19 | 390 | 2.73e-137 | 404 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0180004652.01 | MsG0480020811.01 | 0.805899 | 1.068201e-49 | 5.718788e-47 |
| MsG0480020810.01 | MsG0480020811.01 | 0.822298 | 2.552710e-53 | 2.128169e-50 |
| MsG0480020811.01 | MsG0780040978.01 | 0.817556 | 3.102126e-52 | 2.266413e-49 |
| MsG0480020811.01 | MsG0780040990.01 | 0.827107 | 1.877758e-54 | 1.795285e-51 |
| MsG0280006831.01 | MsG0480020811.01 | -0.809568 | 1.774335e-50 | 1.045406e-47 |
| MsG0280006880.01 | MsG0480020811.01 | -0.814745 | 1.317359e-51 | 8.912720e-49 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480020811.01.T01 | MTR_4g059670 | 61.804 | 377 | 86 | 9 | 1 | 324 | 19 | 390 | 6.93e-141 | 404 |
| MsG0480020811.01.T01 | MTR_4g059630 | 82.514 | 183 | 21 | 2 | 152 | 324 | 200 | 381 | 1.05e-104 | 312 |
| MsG0480020811.01.T01 | MTR_2g080260 | 44.872 | 156 | 84 | 1 | 152 | 307 | 136 | 289 | 2.36e-46 | 160 |
| MsG0480020811.01.T01 | MTR_2g080230 | 44.516 | 155 | 84 | 1 | 153 | 307 | 137 | 289 | 4.37e-45 | 157 |
| MsG0480020811.01.T01 | MTR_8g464300 | 43.590 | 156 | 86 | 1 | 152 | 307 | 136 | 289 | 7.67e-43 | 151 |
| MsG0480020811.01.T01 | MTR_2g030835 | 42.763 | 152 | 83 | 1 | 155 | 306 | 128 | 275 | 9.19e-40 | 143 |
| MsG0480020811.01.T01 | MTR_2g021580 | 38.418 | 177 | 102 | 2 | 155 | 328 | 129 | 301 | 1.75e-38 | 139 |
| MsG0480020811.01.T01 | MTR_2g030825 | 42.763 | 152 | 83 | 1 | 155 | 306 | 393 | 540 | 3.70e-38 | 143 |
| MsG0480020811.01.T01 | MTR_2g030845 | 42.105 | 152 | 84 | 1 | 155 | 306 | 394 | 541 | 7.34e-37 | 139 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480020811.01.T01 | AT5G60520 | 61.932 | 176 | 67 | 0 | 152 | 327 | 154 | 329 | 2.71e-78 | 243 |
| MsG0480020811.01.T01 | AT5G60530 | 62.658 | 158 | 58 | 1 | 151 | 307 | 253 | 410 | 2.92e-71 | 228 |
| MsG0480020811.01.T01 | AT4G27400 | 41.317 | 167 | 92 | 2 | 152 | 314 | 134 | 298 | 1.37e-42 | 150 |
| MsG0480020811.01.T01 | AT5G54370 | 40.000 | 160 | 94 | 1 | 152 | 311 | 131 | 288 | 2.65e-42 | 150 |
| MsG0480020811.01.T01 | AT3G19430 | 45.223 | 157 | 84 | 2 | 152 | 306 | 374 | 530 | 1.67e-40 | 149 |
| MsG0480020811.01.T01 | AT3G19430 | 45.223 | 157 | 84 | 2 | 152 | 306 | 351 | 507 | 1.75e-40 | 149 |
| MsG0480020811.01.T01 | AT1G54890 | 37.705 | 183 | 107 | 3 | 152 | 328 | 137 | 318 | 1.87e-38 | 140 |
Find 90 sgRNAs with CRISPR-Local
Find 119 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGACTCTCTTACAGTAAAA+TGG | 0.185746 | 4:+48726127 | MsG0480020811.01.T01:CDS |
| TTATCCTTCTTGTTCTTCTT+TGG | 0.195002 | 4:-48725342 | None:intergenic |
| AGTGTTAGAGTGACGGTTTC+CGG | 0.293869 | 4:+48726249 | MsG0480020811.01.T01:CDS |
| TTCCTTTGTTTACACTCTTC+CGG | 0.316690 | 4:-48725318 | None:intergenic |
| AGGCAAAGGAAAGGGGAAAA+AGG | 0.348798 | 4:+48725192 | MsG0480020811.01.T01:CDS |
| CATTGCCATTACCATTTCCT+TGG | 0.358834 | 4:-48725045 | None:intergenic |
| ATTCCATTGAGTTACTCTAT+TGG | 0.373593 | 4:-48726097 | None:intergenic |
| TTGAAAAGAGTGATGGAGTT+TGG | 0.380596 | 4:-48726499 | None:intergenic |
| GGTTTCCGGTTTGCTTGAAA+TGG | 0.386604 | 4:+48726263 | MsG0480020811.01.T01:CDS |
| GAACCGTAGCCATCACAATT+TGG | 0.391092 | 4:-48725866 | None:intergenic |
| GACATAAGGGTAAGGCCTAT+TGG | 0.392194 | 4:+48726285 | MsG0480020811.01.T01:CDS |
| AATCCTACAGATTCTATTGA+AGG | 0.405188 | 4:+48726390 | MsG0480020811.01.T01:CDS |
| AAAGACAAAGGCAAAGGAAA+GGG | 0.406086 | 4:+48725184 | MsG0480020811.01.T01:CDS |
| AAGAAGAACAAGAAGGATAA+AGG | 0.412069 | 4:+48725345 | MsG0480020811.01.T01:CDS |
| TTTCAAGACACTTGTGTGTC+CGG | 0.420772 | 4:+48725299 | MsG0480020811.01.T01:CDS |
| CTGGCAAGCTTTCATATTTG+AGG | 0.425369 | 4:-48725224 | None:intergenic |
| CTTGGCTAGTGGAAGGCCTC+TGG | 0.433828 | 4:-48726544 | None:intergenic |
| GGTAAGGCCTATTGGAGAAA+AGG | 0.448306 | 4:+48726293 | MsG0480020811.01.T01:CDS |
| GTTTGCTTGAAATGGACATA+AGG | 0.452921 | 4:+48726271 | MsG0480020811.01.T01:CDS |
| CAACAACATGCAAACTCTGC+AGG | 0.455560 | 4:+48726519 | MsG0480020811.01.T01:CDS |
| AAGCTTGCCAGCTCTTCAAT+CGG | 0.459439 | 4:+48725236 | MsG0480020811.01.T01:CDS |
| AAGCATCATCTGATGGCAAT+TGG | 0.461439 | 4:-48726335 | None:intergenic |
| TCCTGTCCCGATTGAAGAGC+TGG | 0.462032 | 4:-48725243 | None:intergenic |
| TGACTCTCTTACAGTAAAAT+GGG | 0.465803 | 4:+48726128 | MsG0480020811.01.T01:CDS |
| CGGTAACAATGGCAACGGTA+AGG | 0.466846 | 4:+48725108 | MsG0480020811.01.T01:CDS |
| ATTGCTCAAGGCCAAGGAAA+TGG | 0.467146 | 4:+48725034 | MsG0480020811.01.T01:CDS |
| TATGTCCATTTCAAGCAAAC+CGG | 0.477542 | 4:-48726268 | None:intergenic |
| AGGCGTTGCTATGCCGATGA+TGG | 0.478306 | 4:+48726461 | MsG0480020811.01.T01:CDS |
| TTTGCTTGAAATGGACATAA+GGG | 0.483863 | 4:+48726272 | MsG0480020811.01.T01:CDS |
| TACGATCCTCGCTTTGTTGG+TGG | 0.487215 | 4:+48725896 | MsG0480020811.01.T01:CDS |
| TTAGTAACTATTCCTTCTGA+TGG | 0.487513 | 4:+48726159 | MsG0480020811.01.T01:CDS |
| TGTTACGATCCTCGCTTTGT+TGG | 0.488383 | 4:+48725893 | MsG0480020811.01.T01:CDS |
| AGCTTGCCAGCTCTTCAATC+GGG | 0.489857 | 4:+48725237 | MsG0480020811.01.T01:CDS |
| TTTGCCACTTGACTTCCATT+CGG | 0.489934 | 4:-48726187 | None:intergenic |
| GGTAACAATGGCAACGGTAA+TGG | 0.490289 | 4:+48725079 | MsG0480020811.01.T01:CDS |
| CCTCGCTTTGTTGGTGGTGA+CGG | 0.491282 | 4:+48725902 | MsG0480020811.01.T01:CDS |
| AGCAATTAGTCCTTGGCTAG+TGG | 0.496547 | 4:-48726555 | None:intergenic |
| CATGTTGTTGAAAAGAGTGA+TGG | 0.501148 | 4:-48726506 | None:intergenic |
| ATAGCAACGCCTCTCTTGAC+AGG | 0.501342 | 4:-48726450 | None:intergenic |
| AGTATTGAGCAATTAGTCCT+TGG | 0.501765 | 4:-48726562 | None:intergenic |
| CAAAGACAAAGGCAAAGGAA+AGG | 0.504829 | 4:+48725183 | MsG0480020811.01.T01:CDS |
| GCCAGCTCTTCAATCGGGAC+AGG | 0.506018 | 4:+48725242 | MsG0480020811.01.T01:CDS |
| CTTGTCTTCCCTCCCATCAT+CGG | 0.514290 | 4:-48726474 | None:intergenic |
| TTGACAGGACTAACATAACT+TGG | 0.528654 | 4:-48726435 | None:intergenic |
| CAGCCAATAGAGTAACTCAA+TGG | 0.535035 | 4:+48726094 | MsG0480020811.01.T01:CDS |
| CAAGGCCAAGGAAATGGTAA+TGG | 0.535225 | 4:+48725040 | MsG0480020811.01.T01:CDS |
| GCTGTCATTGCTCAAGGCCA+AGG | 0.536607 | 4:+48725028 | MsG0480020811.01.T01:CDS |
| CAACGGTAAGGGAAATGATA+AGG | 0.536819 | 4:+48725120 | MsG0480020811.01.T01:CDS |
| AATGGCAATGGCAATGATAA+CGG | 0.544965 | 4:+48725058 | MsG0480020811.01.T01:CDS |
| GGCGTTGCTATGCCGATGAT+GGG | 0.546171 | 4:+48726462 | MsG0480020811.01.T01:CDS |
| AAGACAAAGGCAAAGGAAAG+GGG | 0.568570 | 4:+48725185 | MsG0480020811.01.T01:CDS |
| GGTAACAATGGCAACGGTAA+GGG | 0.569494 | 4:+48725109 | MsG0480020811.01.T01:CDS |
| GCAAACTCTGCAGGTTCCAG+AGG | 0.576301 | 4:+48726528 | MsG0480020811.01.T01:CDS |
| ATGGAAGCTGTCATTGCTCA+AGG | 0.577049 | 4:+48725022 | MsG0480020811.01.T01:CDS |
| GAAGGACTCGCGATTACACA+TGG | 0.579448 | 4:+48726025 | MsG0480020811.01.T01:CDS |
| TGTGAACTTACACTTGCAAG+TGG | 0.579594 | 4:-48725397 | None:intergenic |
| CAAACAAAGAGAAGTGATTG+TGG | 0.580759 | 4:+48726206 | MsG0480020811.01.T01:CDS |
| GACAAAGACGACAAAGACAA+AGG | 0.583327 | 4:+48725172 | MsG0480020811.01.T01:CDS |
| CAAGGAAATGGTAATGGCAA+TGG | 0.586689 | 4:+48725046 | MsG0480020811.01.T01:CDS |
| GGCAATGATAACGGTAACAA+TGG | 0.590008 | 4:+48725067 | MsG0480020811.01.T01:CDS |
| TTGAAATGGACATAAGGGTA+AGG | 0.592556 | 4:+48726277 | MsG0480020811.01.T01:CDS |
| GACGACAAAGACAAAGGCAA+AGG | 0.593756 | 4:+48725178 | MsG0480020811.01.T01:CDS |
| CTTCAATCGGGACAGGAACG+AGG | 0.594901 | 4:+48725249 | MsG0480020811.01.T01:CDS |
| ACTCCTTCAATAGAATCTGT+AGG | 0.597663 | 4:-48726393 | None:intergenic |
| GAAGCCAAAGAAGAACAAGA+AGG | 0.599717 | 4:+48725338 | MsG0480020811.01.T01:CDS |
| AGACCAAATTGTGATGGCTA+CGG | 0.601516 | 4:+48725863 | MsG0480020811.01.T01:CDS |
| CATTCGGCATCTCCATCAGA+AGG | 0.601517 | 4:-48726171 | None:intergenic |
| CTTCTGATGGAGATGCCGAA+TGG | 0.602970 | 4:+48726172 | MsG0480020811.01.T01:CDS |
| TGCAAACAGTGTTAGAGTGA+CGG | 0.603754 | 4:+48726242 | MsG0480020811.01.T01:CDS |
| AATGGTAACAACGGTAACAA+TGG | 0.605001 | 4:+48725097 | MsG0480020811.01.T01:CDS |
| GTTAGAAGACCAAATTGTGA+TGG | 0.607905 | 4:+48725857 | MsG0480020811.01.T01:intron |
| TGAGCAAAAGCATCATCTGA+TGG | 0.608641 | 4:-48726342 | None:intergenic |
| TTGCTATGCCGATGATGGGA+GGG | 0.611268 | 4:+48726466 | MsG0480020811.01.T01:CDS |
| AAATGATAAGGACGAAGGCA+AGG | 0.611935 | 4:+48725132 | MsG0480020811.01.T01:CDS |
| CAGAGGCCTTCCACTAGCCA+AGG | 0.613753 | 4:+48726545 | MsG0480020811.01.T01:CDS |
| ATTAGTCCTTGGCTAGTGGA+AGG | 0.619757 | 4:-48726551 | None:intergenic |
| AAGGACGAAGGCAAGGACAA+AGG | 0.625848 | 4:+48725139 | MsG0480020811.01.T01:CDS |
| GATAACGGTAACAATGGCAA+CGG | 0.627056 | 4:+48725073 | MsG0480020811.01.T01:CDS |
| AACAACGGTAACAATGGCAA+CGG | 0.628721 | 4:+48725103 | MsG0480020811.01.T01:CDS |
| TATTGGAGAAAAGGAAAACA+AGG | 0.632095 | 4:+48726302 | MsG0480020811.01.T01:CDS |
| TATGTTAGTCCTGTCAAGAG+AGG | 0.633793 | 4:+48726441 | MsG0480020811.01.T01:CDS |
| GGCAACGGTAATGGTAACAA+CGG | 0.636737 | 4:+48725088 | MsG0480020811.01.T01:CDS |
| GTTGCTATGCCGATGATGGG+AGG | 0.637852 | 4:+48726465 | MsG0480020811.01.T01:CDS |
| TTCAATCGGGACAGGAACGA+GGG | 0.650568 | 4:+48725250 | MsG0480020811.01.T01:CDS |
| TCTCTTACAGTAAAATGGGA+CGG | 0.652194 | 4:+48726132 | MsG0480020811.01.T01:CDS |
| CCGTCACCACCAACAAAGCG+AGG | 0.670633 | 4:-48725902 | None:intergenic |
| GATGCCGAATGGAAGTCAAG+TGG | 0.682123 | 4:+48726183 | MsG0480020811.01.T01:CDS |
| AAGGGAAATGATAAGGACGA+AGG | 0.689947 | 4:+48725127 | MsG0480020811.01.T01:CDS |
| AAGGACTCGCGATTACACAT+GGG | 0.725962 | 4:+48726026 | MsG0480020811.01.T01:CDS |
| GTCCGGAAGAGTGTAAACAA+AGG | 0.729113 | 4:+48725316 | MsG0480020811.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CATCTATCTATATTTATATT+TGG | + | Chr4:48725418-48725437 | MsG0480020811.01.T01:intron | 15.0% |
| !! | ATTTAATTAGATATGATTGC+AGG | + | Chr4:48725683-48725702 | MsG0480020811.01.T01:intron | 20.0% |
| !!! | GTGTATATAGAAGTATTAAA+TGG | - | Chr4:48725655-48725674 | None:intergenic | 20.0% |
| !! | ATGTAGATTTTGTCTATGAT+AGG | + | Chr4:48725602-48725621 | MsG0480020811.01.T01:intron | 25.0% |
| !! | TGTAGATTTTGTCTATGATA+GGG | + | Chr4:48725603-48725622 | MsG0480020811.01.T01:intron | 25.0% |
| AAGAAGAACAAGAAGGATAA+AGG | + | Chr4:48725345-48725364 | MsG0480020811.01.T01:CDS | 30.0% | |
| AATCCTACAGATTCTATTGA+AGG | + | Chr4:48726390-48726409 | MsG0480020811.01.T01:CDS | 30.0% | |
| ATTCCATTGAGTTACTCTAT+TGG | - | Chr4:48726100-48726119 | None:intergenic | 30.0% | |
| TAATACTTGATCTATACCGT+TGG | + | Chr4:48725451-48725470 | MsG0480020811.01.T01:intron | 30.0% | |
| TATGAAATCTGATTAGACGA+CGG | + | Chr4:48725767-48725786 | MsG0480020811.01.T01:intron | 30.0% | |
| TATTGGAGAAAAGGAAAACA+AGG | + | Chr4:48726302-48726321 | MsG0480020811.01.T01:CDS | 30.0% | |
| TCAGGTCCAAAATATAAAGT+TGG | - | Chr4:48725500-48725519 | None:intergenic | 30.0% | |
| TGACTCTCTTACAGTAAAAT+GGG | + | Chr4:48726128-48726147 | MsG0480020811.01.T01:CDS | 30.0% | |
| TGGATCATCATAAGATAAGA+TGG | - | Chr4:48725533-48725552 | None:intergenic | 30.0% | |
| TTAGTAACTATTCCTTCTGA+TGG | + | Chr4:48726159-48726178 | MsG0480020811.01.T01:CDS | 30.0% | |
| TTATCCTTCTTGTTCTTCTT+TGG | - | Chr4:48725345-48725364 | None:intergenic | 30.0% | |
| TTGACTCTCTTACAGTAAAA+TGG | + | Chr4:48726127-48726146 | MsG0480020811.01.T01:CDS | 30.0% | |
| TTTGCTTGAAATGGACATAA+GGG | + | Chr4:48726272-48726291 | MsG0480020811.01.T01:CDS | 30.0% | |
| ! | AATGACAAGTATTTTGTGCT+TGG | - | Chr4:48725281-48725300 | None:intergenic | 30.0% |
| ! | CATGGTCCAACTTTATATTT+TGG | + | Chr4:48725491-48725510 | MsG0480020811.01.T01:intron | 30.0% |
| ! | GATTCTATTGAAGGAGTTTT+AGG | + | Chr4:48726399-48726418 | MsG0480020811.01.T01:CDS | 30.0% |
| ! | TTGTTTTCCTTTTCTCCAAT+AGG | - | Chr4:48726303-48726322 | None:intergenic | 30.0% |
| !!! | GAGTTTTAGGTCAAACTTAT+AGG | + | Chr4:48726412-48726431 | MsG0480020811.01.T01:CDS | 30.0% |
| AAAGACAAAGGCAAAGGAAA+GGG | + | Chr4:48725184-48725203 | MsG0480020811.01.T01:CDS | 35.0% | |
| AATGGCAATGGCAATGATAA+CGG | + | Chr4:48725058-48725077 | MsG0480020811.01.T01:CDS | 35.0% | |
| AATGGTAACAACGGTAACAA+TGG | + | Chr4:48725097-48725116 | MsG0480020811.01.T01:CDS | 35.0% | |
| ACTCCTTCAATAGAATCTGT+AGG | - | Chr4:48726396-48726415 | None:intergenic | 35.0% | |
| ATCGTCTGATCTTAATCCAA+CGG | - | Chr4:48725470-48725489 | None:intergenic | 35.0% | |
| CAAACAAAGAGAAGTGATTG+TGG | + | Chr4:48726206-48726225 | MsG0480020811.01.T01:CDS | 35.0% | |
| CATGTTGTTGAAAAGAGTGA+TGG | - | Chr4:48726509-48726528 | None:intergenic | 35.0% | |
| GTTAGAAGACCAAATTGTGA+TGG | + | Chr4:48725857-48725876 | MsG0480020811.01.T01:intron | 35.0% | |
| GTTTGCTTGAAATGGACATA+AGG | + | Chr4:48726271-48726290 | MsG0480020811.01.T01:CDS | 35.0% | |
| TATGTCCATTTCAAGCAAAC+CGG | - | Chr4:48726271-48726290 | None:intergenic | 35.0% | |
| TCTCTTACAGTAAAATGGGA+CGG | + | Chr4:48726132-48726151 | MsG0480020811.01.T01:CDS | 35.0% | |
| TTGAAATGGACATAAGGGTA+AGG | + | Chr4:48726277-48726296 | MsG0480020811.01.T01:CDS | 35.0% | |
| TTGACAGGACTAACATAACT+TGG | - | Chr4:48726438-48726457 | None:intergenic | 35.0% | |
| ! | AGATGATGCTTTTGCTCATT+TGG | + | Chr4:48726347-48726366 | MsG0480020811.01.T01:CDS | 35.0% |
| ! | GAATTCATCGTCTGAAACTA+TGG | - | Chr4:48725969-48725988 | None:intergenic | 35.0% |
| ! | TTCCTTTGTTTACACTCTTC+CGG | - | Chr4:48725321-48725340 | None:intergenic | 35.0% |
| ! | TTGAAAAGAGTGATGGAGTT+TGG | - | Chr4:48726502-48726521 | None:intergenic | 35.0% |
| !! | ATTAAATGGACTAGCATGAG+AGG | - | Chr4:48725641-48725660 | None:intergenic | 35.0% |
| AAATGATAAGGACGAAGGCA+AGG | + | Chr4:48725132-48725151 | MsG0480020811.01.T01:CDS | 40.0% | |
| AACAACGGTAACAATGGCAA+CGG | + | Chr4:48725103-48725122 | MsG0480020811.01.T01:CDS | 40.0% | |
| AAGACAAAGGCAAAGGAAAG+GGG | + | Chr4:48725185-48725204 | MsG0480020811.01.T01:CDS | 40.0% | |
| AAGCATCATCTGATGGCAAT+TGG | - | Chr4:48726338-48726357 | None:intergenic | 40.0% | |
| AAGGGAAATGATAAGGACGA+AGG | + | Chr4:48725127-48725146 | MsG0480020811.01.T01:CDS | 40.0% | |
| AGACCAAATTGTGATGGCTA+CGG | + | Chr4:48725863-48725882 | MsG0480020811.01.T01:CDS | 40.0% | |
| CAAAGACAAAGGCAAAGGAA+AGG | + | Chr4:48725183-48725202 | MsG0480020811.01.T01:CDS | 40.0% | |
| CAACGGTAAGGGAAATGATA+AGG | + | Chr4:48725120-48725139 | MsG0480020811.01.T01:CDS | 40.0% | |
| CAGCCAATAGAGTAACTCAA+TGG | + | Chr4:48726094-48726113 | MsG0480020811.01.T01:CDS | 40.0% | |
| CATTGCCATTACCATTTCCT+TGG | - | Chr4:48725048-48725067 | None:intergenic | 40.0% | |
| CCAAATCAACGCAACTTCAT+CGG | + | Chr4:48725988-48726007 | MsG0480020811.01.T01:intron | 40.0% | |
| CTGGCAAGCTTTCATATTTG+AGG | - | Chr4:48725227-48725246 | None:intergenic | 40.0% | |
| GAAGCCAAAGAAGAACAAGA+AGG | + | Chr4:48725338-48725357 | MsG0480020811.01.T01:CDS | 40.0% | |
| GACAAAGACGACAAAGACAA+AGG | + | Chr4:48725172-48725191 | MsG0480020811.01.T01:CDS | 40.0% | |
| GATTAAGATCAGACGATGCA+TGG | + | Chr4:48725473-48725492 | MsG0480020811.01.T01:intron | 40.0% | |
| TAAGATGGCTCACATAAGTC+AGG | - | Chr4:48725518-48725537 | None:intergenic | 40.0% | |
| TATGTTAGTCCTGTCAAGAG+AGG | + | Chr4:48726441-48726460 | MsG0480020811.01.T01:CDS | 40.0% | |
| TGCAAACAGTGTTAGAGTGA+CGG | + | Chr4:48726242-48726261 | MsG0480020811.01.T01:CDS | 40.0% | |
| TGTGAACTTACACTTGCAAG+TGG | - | Chr4:48725400-48725419 | None:intergenic | 40.0% | |
| TTTCAAGACACTTGTGTGTC+CGG | + | Chr4:48725299-48725318 | MsG0480020811.01.T01:CDS | 40.0% | |
| ! | GATAACGGTAACAATGGCAA+CGG | + | Chr4:48725073-48725092 | MsG0480020811.01.T01:CDS | 40.0% |
| ! | TTTGCCACTTGACTTCCATT+CGG | - | Chr4:48726190-48726209 | None:intergenic | 40.0% |
| !! | CAAGGAAATGGTAATGGCAA+TGG | + | Chr4:48725046-48725065 | MsG0480020811.01.T01:CDS | 40.0% |
| !! | GGCAATGATAACGGTAACAA+TGG | + | Chr4:48725067-48725086 | MsG0480020811.01.T01:CDS | 40.0% |
| !! | TGAGCAAAAGCATCATCTGA+TGG | - | Chr4:48726345-48726364 | None:intergenic | 40.0% |
| AAGCTTGCCAGCTCTTCAAT+CGG | + | Chr4:48725236-48725255 | MsG0480020811.01.T01:CDS | 45.0% | |
| AAGGACTCGCGATTACACAT+GGG | + | Chr4:48726026-48726045 | MsG0480020811.01.T01:CDS | 45.0% | |
| AGGCAAAGGAAAGGGGAAAA+AGG | + | Chr4:48725192-48725211 | MsG0480020811.01.T01:CDS | 45.0% | |
| AGTGTTAGAGTGACGGTTTC+CGG | + | Chr4:48726249-48726268 | MsG0480020811.01.T01:CDS | 45.0% | |
| ATGGAAGCTGTCATTGCTCA+AGG | + | Chr4:48725022-48725041 | MsG0480020811.01.T01:CDS | 45.0% | |
| ATTGCTCAAGGCCAAGGAAA+TGG | + | Chr4:48725034-48725053 | MsG0480020811.01.T01:CDS | 45.0% | |
| CAACAACATGCAAACTCTGC+AGG | + | Chr4:48726519-48726538 | MsG0480020811.01.T01:CDS | 45.0% | |
| CAAGGCCAAGGAAATGGTAA+TGG | + | Chr4:48725040-48725059 | MsG0480020811.01.T01:CDS | 45.0% | |
| GAACCGTAGCCATCACAATT+TGG | - | Chr4:48725869-48725888 | None:intergenic | 45.0% | |
| GACATAAGGGTAAGGCCTAT+TGG | + | Chr4:48726285-48726304 | MsG0480020811.01.T01:CDS | 45.0% | |
| GACGACAAAGACAAAGGCAA+AGG | + | Chr4:48725178-48725197 | MsG0480020811.01.T01:CDS | 45.0% | |
| GGTAACAATGGCAACGGTAA+GGG | + | Chr4:48725079-48725098 | MsG0480020811.01.T01:CDS | 45.0% | |
| GGTAACAATGGCAACGGTAA+TGG | + | Chr4:48725079-48725098 | MsG0480020811.01.T01:CDS | 45.0% | |
| GGTAAGGCCTATTGGAGAAA+AGG | + | Chr4:48726293-48726312 | MsG0480020811.01.T01:CDS | 45.0% | |
| GGTGTGATGTTCTACTTCCA+TGG | + | Chr4:48725923-48725942 | MsG0480020811.01.T01:intron | 45.0% | |
| TATGGCGAAGTTTCCTCCTT+TGG | - | Chr4:48725951-48725970 | None:intergenic | 45.0% | |
| TGTTACGATCCTCGCTTTGT+TGG | + | Chr4:48725893-48725912 | MsG0480020811.01.T01:CDS | 45.0% | |
| TTCTACTTCCATGGAGCCAA+AGG | + | Chr4:48725932-48725951 | MsG0480020811.01.T01:intron | 45.0% | |
| TTTGACGTAGTCACGCGATT+TGG | - | Chr4:48725553-48725572 | None:intergenic | 45.0% | |
| ! | GGCAACGGTAATGGTAACAA+CGG | + | Chr4:48725088-48725107 | MsG0480020811.01.T01:CDS | 45.0% |
| ! | GGTTTCCGGTTTGCTTGAAA+TGG | + | Chr4:48726263-48726282 | MsG0480020811.01.T01:CDS | 45.0% |
| ! | GTCCGGAAGAGTGTAAACAA+AGG | + | Chr4:48725316-48725335 | MsG0480020811.01.T01:CDS | 45.0% |
| !! | CCGATGAAGTTGCGTTGATT+TGG | - | Chr4:48725991-48726010 | None:intergenic | 45.0% |
| AAGGACGAAGGCAAGGACAA+AGG | + | Chr4:48725139-48725158 | MsG0480020811.01.T01:CDS | 50.0% | |
| AGCTTGCCAGCTCTTCAATC+GGG | + | Chr4:48725237-48725256 | MsG0480020811.01.T01:CDS | 50.0% | |
| ATAGCAACGCCTCTCTTGAC+AGG | - | Chr4:48726453-48726472 | None:intergenic | 50.0% | |
| CATTCGGCATCTCCATCAGA+AGG | - | Chr4:48726174-48726193 | None:intergenic | 50.0% | |
| CGGTAACAATGGCAACGGTA+AGG | + | Chr4:48725078-48725097 | MsG0480020811.01.T01:CDS | 50.0% | |
| CTTCTGATGGAGATGCCGAA+TGG | + | Chr4:48726172-48726191 | MsG0480020811.01.T01:CDS | 50.0% | |
| CTTGTCTTCCCTCCCATCAT+CGG | - | Chr4:48726477-48726496 | None:intergenic | 50.0% | |
| GAAGGACTCGCGATTACACA+TGG | + | Chr4:48726025-48726044 | MsG0480020811.01.T01:CDS | 50.0% | |
| GATGCCGAATGGAAGTCAAG+TGG | + | Chr4:48726183-48726202 | MsG0480020811.01.T01:CDS | 50.0% | |
| TACTTCCATGGAGCCAAAGG+AGG | + | Chr4:48725935-48725954 | MsG0480020811.01.T01:intron | 50.0% | |
| TTCAATCGGGACAGGAACGA+GGG | + | Chr4:48725250-48725269 | MsG0480020811.01.T01:CDS | 50.0% | |
| TTCATCGGTACTCGACCTCA+GGG | + | Chr4:48726003-48726022 | MsG0480020811.01.T01:intron | 50.0% | |
| ! | AGTTTCCTCCTTTGGCTCCA+TGG | - | Chr4:48725943-48725962 | None:intergenic | 50.0% |
| ! | TACGATCCTCGCTTTGTTGG+TGG | + | Chr4:48725896-48725915 | MsG0480020811.01.T01:CDS | 50.0% |
| !! | TTGCTATGCCGATGATGGGA+GGG | + | Chr4:48726466-48726485 | MsG0480020811.01.T01:CDS | 50.0% |
| CTTCAATCGGGACAGGAACG+AGG | + | Chr4:48725249-48725268 | MsG0480020811.01.T01:CDS | 55.0% | |
| CTTCATCGGTACTCGACCTC+AGG | + | Chr4:48726002-48726021 | MsG0480020811.01.T01:intron | 55.0% | |
| GCAAACTCTGCAGGTTCCAG+AGG | + | Chr4:48726528-48726547 | MsG0480020811.01.T01:CDS | 55.0% | |
| GCTGTCATTGCTCAAGGCCA+AGG | + | Chr4:48725028-48725047 | MsG0480020811.01.T01:CDS | 55.0% | |
| GGCGTTGCTATGCCGATGAT+GGG | + | Chr4:48726462-48726481 | MsG0480020811.01.T01:CDS | 55.0% | |
| TAATCGCGAGTCCTTCCCTG+AGG | - | Chr4:48726021-48726040 | None:intergenic | 55.0% | |
| TCCTGTCCCGATTGAAGAGC+TGG | - | Chr4:48725246-48725265 | None:intergenic | 55.0% | |
| ! | AGGCGTTGCTATGCCGATGA+TGG | + | Chr4:48726461-48726480 | MsG0480020811.01.T01:CDS | 55.0% |
| !! | CCTCGCTTTGTTGGTGGTGA+CGG | + | Chr4:48725902-48725921 | MsG0480020811.01.T01:CDS | 55.0% |
| !! | GTTGCTATGCCGATGATGGG+AGG | + | Chr4:48726465-48726484 | MsG0480020811.01.T01:CDS | 55.0% |
| CAGAGGCCTTCCACTAGCCA+AGG | + | Chr4:48726545-48726564 | MsG0480020811.01.T01:CDS | 60.0% | |
| CCGTCACCACCAACAAAGCG+AGG | - | Chr4:48725905-48725924 | None:intergenic | 60.0% | |
| CTTGGCTAGTGGAAGGCCTC+TGG | - | Chr4:48726547-48726566 | None:intergenic | 60.0% | |
| GCCAGCTCTTCAATCGGGAC+AGG | + | Chr4:48725242-48725261 | MsG0480020811.01.T01:CDS | 60.0% | |
| TCGGTACTCGACCTCAGGGA+AGG | + | Chr4:48726007-48726026 | MsG0480020811.01.T01:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr4 | gene | 48725022 | 48726572 | 48725022 | ID=MsG0480020811.01;Name=MsG0480020811.01 |
| Chr4 | mRNA | 48725022 | 48726572 | 48725022 | ID=MsG0480020811.01.T01;Parent=MsG0480020811.01;Name=MsG0480020811.01.T01;_AED=0.49;_eAED=0.53;_QI=0|0|0|1|1|1|3|0|333 |
| Chr4 | exon | 48725022 | 48725408 | 48725022 | ID=MsG0480020811.01.T01:exon:7376;Parent=MsG0480020811.01.T01 |
| Chr4 | exon | 48725858 | 48725923 | 48725858 | ID=MsG0480020811.01.T01:exon:7377;Parent=MsG0480020811.01.T01 |
| Chr4 | exon | 48726024 | 48726572 | 48726024 | ID=MsG0480020811.01.T01:exon:7378;Parent=MsG0480020811.01.T01 |
| Chr4 | CDS | 48725022 | 48725408 | 48725022 | ID=MsG0480020811.01.T01:cds;Parent=MsG0480020811.01.T01 |
| Chr4 | CDS | 48725858 | 48725923 | 48725858 | ID=MsG0480020811.01.T01:cds;Parent=MsG0480020811.01.T01 |
| Chr4 | CDS | 48726024 | 48726572 | 48726024 | ID=MsG0480020811.01.T01:cds;Parent=MsG0480020811.01.T01 |
| Gene Sequence |
| Protein sequence |
