AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0780040978.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780040978.01.T01 MTR_7g102120 100.000 390 0 0 1 390 1 390 0.0 808
MsG0780040978.01.T01 MTR_1g063060 94.103 390 23 0 1 390 19 408 0.0 741
MsG0780040978.01.T01 MTR_1g063060 94.103 390 23 0 1 390 1 390 0.0 740
MsG0780040978.01.T01 MTR_7g110310 88.860 386 43 0 2 387 3 388 0.0 704
MsG0780040978.01.T01 MTR_2g046710 90.674 386 36 0 2 387 4 389 0.0 704
MsG0780040978.01.T01 MTR_4g123810 90.155 386 38 0 2 387 4 389 0.0 699
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780040978.01.T01 AT2G36880 93.077 390 27 0 1 390 1 390 0.0 731
MsG0780040978.01.T01 AT2G36880 93.077 390 27 0 1 390 1 390 0.0 731
MsG0780040978.01.T01 AT3G17390 90.698 387 36 0 1 387 1 387 0.0 708
MsG0780040978.01.T01 AT4G01850 88.889 387 43 0 1 387 1 387 0.0 700
MsG0780040978.01.T01 AT4G01850 88.889 387 43 0 1 387 1 387 0.0 700
MsG0780040978.01.T01 AT1G02500 89.922 387 39 0 1 387 1 387 0.0 700
MsG0780040978.01.T01 AT1G02500 89.922 387 39 0 1 387 1 387 0.0 700

Find 130 sgRNAs with CRISPR-Local

Find 187 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGTAGCCATCTTTCAGATTT+TGG 0.107560 7:+85118157 MsG0780040978.01.T01:three_prime_UTR
CCATAGCTCCGTTATCATTT+TGG 0.158559 7:-85117468 None:intergenic
ACTGCTGCATATGGCCATTT+TGG 0.193128 7:+85118033 MsG0780040978.01.T01:CDS
CCATCTGGTCGGTTTGTTAT+TGG 0.197743 7:+85117640 MsG0780040978.01.T01:CDS
TCACATGCAACCTTACTTTC+TGG 0.212828 7:-85117046 None:intergenic
GTTGGGCACGTTAGCTCAAT+AGG 0.290555 7:+85118313 MsG0780040978.01.T01:three_prime_UTR
CGAGACACTTGCAGAGGAAT+TGG 0.296576 7:+85117148 MsG0780040978.01.T01:CDS
AAATTTCATTATTAAGTTAT+GGG 0.298197 7:+85118386 MsG0780040978.01.T01:three_prime_UTR
ACTAACATGGTTATGGTCTT+TGG 0.303812 7:+85117082 MsG0780040978.01.T01:CDS
CACATGCAACCTTACTTTCT+GGG 0.310592 7:-85117045 None:intergenic
TAAATTTCATTATTAAGTTA+TGG 0.318236 7:+85118385 MsG0780040978.01.T01:three_prime_UTR
GGCCATATGCAGCAGTCTTT+TGG 0.329152 7:-85118026 None:intergenic
ACCTGATCACACAGCTTGTC+GGG 0.335375 7:-85116986 None:intergenic
CATGGAGGAGGTGCCTTCTC+TGG 0.336553 7:+85117733 MsG0780040978.01.T01:CDS
CCCTGAAGCTACCACACTTT+TGG 0.336878 7:-85117809 None:intergenic
TTTGGGTGAAATGAAAATAA+AGG 0.342468 7:+85118175 MsG0780040978.01.T01:three_prime_UTR
GCCAAAAGTGTGGTAGCTTC+AGG 0.346842 7:+85117808 MsG0780040978.01.T01:CDS
AGATTATTGGAAATCATTCC+TGG 0.346876 7:-85117973 None:intergenic
TCAAAAGAGGTGGCAACTTC+AGG 0.361522 7:+85118001 MsG0780040978.01.T01:CDS
CAGGATCATCCCGTCCAAAA+TGG 0.362727 7:-85118047 None:intergenic
TCTTGTTGAAGATACACTTC+GGG 0.374573 7:+85118220 MsG0780040978.01.T01:three_prime_UTR
CTCACTCCAACCACCACATT+TGG 0.374644 7:+85115922 MsG0780040978.01.T01:five_prime_UTR
CCACTTCTATCGACCTTGGT+TGG 0.382632 7:-85117763 None:intergenic
GGCTGGGGTGCTCATGGAGG+AGG 0.385528 7:+85117721 MsG0780040978.01.T01:CDS
CTCATAGTTCACAGTAGCCT+TGG 0.390492 7:-85117116 None:intergenic
TGAAGATACACTTCGGGGAT+TGG 0.392450 7:+85118226 MsG0780040978.01.T01:three_prime_UTR
AGCTTGCAAACTCAAGCCTT+TGG 0.392916 7:-85118102 None:intergenic
TGAACTCCTTGAGCGATATC+AGG 0.407674 7:-85117241 None:intergenic
CACTTCTATCGACCTTGGTT+GGG 0.408524 7:-85117762 None:intergenic
TATGGTGGCTGGGGTGCTCA+TGG 0.408565 7:+85117715 MsG0780040978.01.T01:CDS
AGAGATGATGATGTCTTAGT+TGG 0.411690 7:+85118295 MsG0780040978.01.T01:three_prime_UTR
GTGCAGGTTTCTTATGCAAT+TGG 0.414240 7:+85117850 MsG0780040978.01.T01:CDS
AATTCCAGACAAGGACATCT+TGG 0.414364 7:+85117921 MsG0780040978.01.T01:CDS
TTTGTTGACACATACAAAAC+AGG 0.415934 7:+85117895 MsG0780040978.01.T01:CDS
ACAGTCTCCCAGGTGAAATC+AGG 0.423808 7:-85118066 None:intergenic
TTGGGCACGTTAGCTCAATA+GGG 0.426301 7:+85118314 MsG0780040978.01.T01:three_prime_UTR
TACAAAGACTAACATGGTTA+TGG 0.436292 7:+85117075 MsG0780040978.01.T01:CDS
TGCAAGACGTTGCATTGTGC+AGG 0.438573 7:+85117834 MsG0780040978.01.T01:CDS
CCCCGACAAGCTGTGTGATC+AGG 0.440463 7:+85116985 MsG0780040978.01.T01:CDS
GATATCGCTCAAGGAGTTCA+TGG 0.445977 7:+85117244 MsG0780040978.01.T01:CDS
GCAGCAAGACCCAGAAAGTA+AGG 0.446581 7:+85117036 MsG0780040978.01.T01:CDS
CTTCAACAAGAGATATATAT+AGG 0.447435 7:-85118208 None:intergenic
ACAAAACATGCGCATGGCTT+AGG 0.449886 7:+85117413 MsG0780040978.01.T01:CDS
AGAACCAAGATGTCCTTGTC+TGG 0.450791 7:-85117925 None:intergenic
TTTGGTACTCAACAGTAACT+TGG 0.455837 7:-85117450 None:intergenic
TCTGGTCGGTTTGTTATTGG+TGG 0.458272 7:+85117643 MsG0780040978.01.T01:CDS
GAAGTGGGGCATATATTGTT+AGG 0.460316 7:+85117779 MsG0780040978.01.T01:CDS
GAGTATCTTGACAGTCTCCC+AGG 0.461385 7:-85118076 None:intergenic
TACCAAAAGACTGCTGCATA+TGG 0.464990 7:+85118024 MsG0780040978.01.T01:CDS
ACAAATACAGAAAGTGGCTC+TGG 0.466173 7:-85117877 None:intergenic
TTTGTTATTGGTGGACCTCA+TGG 0.466434 7:+85117652 MsG0780040978.01.T01:CDS
AGGACAGTGTGCACACGGAT+TGG 0.468164 7:-85117493 None:intergenic
TCACCAGCACCAATTTCCTC+TGG 0.468785 7:-85117283 None:intergenic
AACCTGATCACACAGCTTGT+CGG 0.469901 7:-85116987 None:intergenic
ATCTTCCATCTCAATCCATC+TGG 0.470979 7:+85117625 MsG0780040978.01.T01:CDS
GGACAGTGTGCACACGGATT+GGG 0.473091 7:-85117492 None:intergenic
CCAAAAGTGTGGTAGCTTCA+GGG 0.478895 7:+85117809 MsG0780040978.01.T01:CDS
TACACTTCGGGGATTGGATG+TGG 0.480085 7:+85118232 MsG0780040978.01.T01:three_prime_UTR
TTATTGACACCTATGGTGGC+TGG 0.480591 7:+85117704 MsG0780040978.01.T01:CDS
GGTGACCAAGGTCACATGTT+TGG 0.484772 7:+85117301 MsG0780040978.01.T01:CDS
CATGGCATTTCTAGTGGTGG+TGG 0.488805 7:+85118127 MsG0780040978.01.T01:three_prime_UTR
ATAATGAAATTTAAAAGAAG+TGG 0.489758 7:-85118375 None:intergenic
GGTTGGGTCCTTGCCAGAGA+AGG 0.492679 7:-85117746 None:intergenic
TATTGACACCTATGGTGGCT+GGG 0.497719 7:+85117705 MsG0780040978.01.T01:CDS
TTCACCCAAAATCTGAAAGA+TGG 0.508470 7:-85118162 None:intergenic
GTGTCAACAAATACAGAAAG+TGG 0.512228 7:-85117883 None:intergenic
CTCTTGTTGAAGATACACTT+CGG 0.517660 7:+85118219 MsG0780040978.01.T01:three_prime_UTR
TGAGTAAGTGGCATTAGCTC+AGG 0.517740 7:-85117343 None:intergenic
GGAAGATAGTCTTGTCATCA+AGG 0.520901 7:-85117609 None:intergenic
GGTGGACCTCATGGAGATGC+AGG 0.523297 7:+85117661 MsG0780040978.01.T01:CDS
AAGATCATTATTGACACCTA+TGG 0.523504 7:+85117697 MsG0780040978.01.T01:CDS
CATGGAGATGCAGGACTCAC+TGG 0.526918 7:+85117670 MsG0780040978.01.T01:CDS
CTTGAGTTTGCAAGCTACCA+TGG 0.527611 7:+85118109 MsG0780040978.01.T01:exon
TACGTACCAAATGTGGTGGT+TGG 0.532027 7:-85115928 None:intergenic
AATAATCTTGACCTCAAAAG+AGG 0.536379 7:+85117988 MsG0780040978.01.T01:CDS
GAGATGATGATGTCTTAGTT+GGG 0.537847 7:+85118296 MsG0780040978.01.T01:three_prime_UTR
TTGGTACTCAACAGTAACTT+GGG 0.543019 7:-85117449 None:intergenic
GTAGCAAGCACATGAGTAAG+TGG 0.543954 7:-85117355 None:intergenic
GTTGAGTACCAAAATGATAA+CGG 0.545577 7:+85117460 MsG0780040978.01.T01:CDS
TGCCCCACTTCTATCGACCT+TGG 0.546010 7:-85117767 None:intergenic
CCAAAATGATAACGGAGCTA+TGG 0.548166 7:+85117468 MsG0780040978.01.T01:CDS
AAACCAGAGGAAATTGGTGC+TGG 0.551112 7:+85117280 MsG0780040978.01.T01:CDS
GGGATGATCCTGATTTCACC+TGG 0.551255 7:+85118058 MsG0780040978.01.T01:CDS
CATGTGCTTGCTACTAAACT+CGG 0.555316 7:+85117364 MsG0780040978.01.T01:CDS
TGCGCATGGCTTAGGCCTGA+TGG 0.560731 7:+85117421 MsG0780040978.01.T01:CDS
TAGCTCAGGTGTTTCATCTG+TGG 0.560925 7:-85117329 None:intergenic
GGTGGCTGGGGTGCTCATGG+AGG 0.565014 7:+85117718 MsG0780040978.01.T01:CDS
GAAATTGGTGCTGGTGACCA+AGG 0.570337 7:+85117289 MsG0780040978.01.T01:CDS
ATGAGCACCCCAGCCACCAT+AGG 0.576048 7:-85117713 None:intergenic
CAAATACAGAAAGTGGCTCT+GGG 0.576109 7:-85117876 None:intergenic
TCCATCTCAATCCATCTGGT+CGG 0.577302 7:+85117629 MsG0780040978.01.T01:CDS
CTGCAAACATGCATCAAGGA+TGG 0.580545 7:-85117017 None:intergenic
TACCATGGCATTTCTAGTGG+TGG 0.581465 7:+85118124 MsG0780040978.01.T01:three_prime_UTR
CATAGCCAAACATGTGACCT+TGG 0.582504 7:-85117306 None:intergenic
ATTGACACCTATGGTGGCTG+GGG 0.585915 7:+85117706 MsG0780040978.01.T01:CDS
TGACAGATTCTGAGGTGAAG+AGG 0.586047 7:-85116952 None:intergenic
CAACCAAGGTCGATAGAAGT+GGG 0.589471 7:+85117764 MsG0780040978.01.T01:CDS
AGGAGGTGCCTTCTCTGGCA+AGG 0.599631 7:+85117738 MsG0780040978.01.T01:CDS
AGCTACCATGGCATTTCTAG+TGG 0.599933 7:+85118121 MsG0780040978.01.T01:three_prime_UTR
TTCGGGGATTGGATGTGGAA+AGG 0.600351 7:+85118237 MsG0780040978.01.T01:three_prime_UTR
CCAACCAAGGTCGATAGAAG+TGG 0.601493 7:+85117763 MsG0780040978.01.T01:CDS
ACCTTCGTTGACAGATTCTG+AGG 0.606247 7:-85116960 None:intergenic
ATCATTATTGACACCTATGG+TGG 0.611359 7:+85117700 MsG0780040978.01.T01:CDS
CTTGCTGCAAACATGCATCA+AGG 0.611540 7:-85117021 None:intergenic
CCAATAACAAACCGACCAGA+TGG 0.611757 7:-85117640 None:intergenic
AGATGAGGACAGTGTGCACA+CGG 0.613951 7:-85117498 None:intergenic
CATCGTGCTGAGTTGAGATG+AGG 0.617276 7:-85117513 None:intergenic
GGAGAGTTACGTACCAAATG+TGG 0.617785 7:-85115935 None:intergenic
ACCGACCAGATGGATTGAGA+TGG 0.617816 7:-85117630 None:intergenic
GGATTCGTATCAGCTGATGT+TGG 0.619951 7:+85117169 MsG0780040978.01.T01:CDS
CAGAGTCCTGATATCGCTCA+AGG 0.622943 7:+85117235 MsG0780040978.01.T01:CDS
GAAAGAACAAAACATGCGCA+TGG 0.625968 7:+85117407 MsG0780040978.01.T01:CDS
CACCACCACTAGAAATGCCA+TGG 0.628681 7:-85118126 None:intergenic
CTTGTTGAAGATACACTTCG+GGG 0.632474 7:+85118221 MsG0780040978.01.T01:three_prime_UTR
AATCTTGACCTCAAAAGAGG+TGG 0.633225 7:+85117991 MsG0780040978.01.T01:CDS
CTCTGGCAAGGACCCAACCA+AGG 0.634793 7:+85117750 MsG0780040978.01.T01:CDS
GAGATGCAGGACTCACTGGT+AGG 0.648576 7:+85117674 MsG0780040978.01.T01:CDS
ACCTCAGAATCTGTCAACGA+AGG 0.652365 7:+85116959 MsG0780040978.01.T01:CDS
ATGTGGTGGTTGGAGTGAGA+AGG 0.652893 7:-85115918 None:intergenic
TGGGCACGTTAGCTCAATAG+GGG 0.656176 7:+85118315 MsG0780040978.01.T01:three_prime_UTR
CCTGATCACACAGCTTGTCG+GGG 0.668924 7:-85116985 None:intergenic
GGATGATCCTGATTTCACCT+GGG 0.669087 7:+85118059 MsG0780040978.01.T01:CDS
GAGTTACGTACCAAATGTGG+TGG 0.675516 7:-85115932 None:intergenic
TGTCAAGATACTCAAGCCAA+AGG 0.679722 7:+85118086 MsG0780040978.01.T01:CDS
ATAGTTCGAGACACTTGCAG+AGG 0.698300 7:+85117142 MsG0780040978.01.T01:CDS
AACCAAGGTCGATAGAAGTG+GGG 0.698373 7:+85117765 MsG0780040978.01.T01:CDS
CTTTGGTGAGATAACAACCA+AGG 0.702167 7:+85117099 MsG0780040978.01.T01:CDS
TAGGCAAGCAGCCAAAAGTG+TGG 0.702229 7:+85117798 MsG0780040978.01.T01:CDS
GTGAGTCCTGCATCTCCATG+AGG 0.711004 7:-85117667 None:intergenic
GACATGTACAAAGACTAACA+TGG 0.784188 7:+85117069 MsG0780040978.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATTTCATTATTAAGTTAT+GGG + Chr7:85118386-85118405 MsG0780040978.01.T01:three_prime_UTR 10.0%
!! TAAATTTCATTATTAAGTTA+TGG + Chr7:85118385-85118404 MsG0780040978.01.T01:three_prime_UTR 10.0%
!! ATAATGAAATTTAAAAGAAG+TGG - Chr7:85118378-85118397 None:intergenic 15.0%
!! GCAAAAAAAAAAAAAAAACA+TGG - Chr7:85116012-85116031 None:intergenic 15.0%
!!! AAATATGCAAAAACTATTTT+TGG - Chr7:85116334-85116353 None:intergenic 15.0%
!! ATGAATGATAATTGAAACAT+TGG + Chr7:85116424-85116443 MsG0780040978.01.T01:intron 20.0%
!! GGTAAAATAAAAAACAAACA+AGG - Chr7:85118357-85118376 None:intergenic 20.0%
!! GTTATAATGATAAGGAAAAA+AGG - Chr7:85116663-85116682 None:intergenic 20.0%
!! GTTTCAATTATCATTCATAT+TGG - Chr7:85116422-85116441 None:intergenic 20.0%
!! TAATAGAAACATTAGCATTA+TGG + Chr7:85116284-85116303 MsG0780040978.01.T01:intron 20.0%
!!! ATTATGGTTTTAGATTTACT+TGG + Chr7:85116300-85116319 MsG0780040978.01.T01:intron 20.0%
!!! TATTTGATAATTGAACGTTA+AGG + Chr7:85116349-85116368 MsG0780040978.01.T01:intron 20.0%
! ACGCAAAAGTTATAATGATA+AGG - Chr7:85116671-85116690 None:intergenic 25.0%
! ATAACTAGAAAAGGTAAAAG+AGG - Chr7:85115959-85115978 None:intergenic 25.0%
! ATAAGGAACGATGATTTATA+CGG - Chr7:85116623-85116642 None:intergenic 25.0%
! CTTCAACAAGAGATATATAT+AGG - Chr7:85118211-85118230 None:intergenic 25.0%
! TAAAAGAAGGAAGAAAAACA+AGG - Chr7:85116913-85116932 None:intergenic 25.0%
! TTTGGGTGAAATGAAAATAA+AGG + Chr7:85118175-85118194 MsG0780040978.01.T01:three_prime_UTR 25.0%
!! AAAACATGGCATTTTAGATT+TGG - Chr7:85115998-85116017 None:intergenic 25.0%
!! AAACATGGCATTTTAGATTT+GGG - Chr7:85115997-85116016 None:intergenic 25.0%
!!! AAAAAGAAGTGTTAAGATTG+TGG - Chr7:85116511-85116530 None:intergenic 25.0%
!!! AAAAGAAGTGTTAAGATTGT+GGG - Chr7:85116510-85116529 None:intergenic 25.0%
!!! GATTCTTTTGTTGTATTGTT+CGG + Chr7:85116220-85116239 MsG0780040978.01.T01:intron 25.0%
AAGATCATTATTGACACCTA+TGG + Chr7:85117697-85117716 MsG0780040978.01.T01:CDS 30.0%
AATAATCTTGACCTCAAAAG+AGG + Chr7:85117988-85118007 MsG0780040978.01.T01:CDS 30.0%
AATAATGTTTCCGTGACTAT+TGG - Chr7:85116385-85116404 None:intergenic 30.0%
AGATTATTGGAAATCATTCC+TGG - Chr7:85117976-85117995 None:intergenic 30.0%
CTCATATCAATACGTTAGAA+AGG - Chr7:85116770-85116789 None:intergenic 30.0%
GATAATTGAACGTTAAGGTA+TGG + Chr7:85116354-85116373 MsG0780040978.01.T01:intron 30.0%
GATCTGATGATAACTAGAAA+AGG - Chr7:85115968-85115987 None:intergenic 30.0%
GTTGAGTACCAAAATGATAA+CGG + Chr7:85117460-85117479 MsG0780040978.01.T01:CDS 30.0%
TAATTGAAACATTGGCAATG+TGG + Chr7:85116432-85116451 MsG0780040978.01.T01:intron 30.0%
TACAAAGACTAACATGGTTA+TGG + Chr7:85117075-85117094 MsG0780040978.01.T01:CDS 30.0%
TTCATAAAGTAGATAGCATG+AGG - Chr7:85116054-85116073 None:intergenic 30.0%
TTTGTTGACACATACAAAAC+AGG + Chr7:85117895-85117914 MsG0780040978.01.T01:CDS 30.0%
! ATAAGGAAAAAAGGTGTATG+TGG - Chr7:85116654-85116673 None:intergenic 30.0%
! GCATTTTATGTACTTTTGAG+AGG + Chr7:85116735-85116754 MsG0780040978.01.T01:intron 30.0%
! GTCAATTGTCAAACTCTTTT+TGG + Chr7:85116569-85116588 MsG0780040978.01.T01:intron 30.0%
! TAGAAGTAGCTTTTGTGTAT+AGG + Chr7:85116480-85116499 MsG0780040978.01.T01:intron 30.0%
! TTCTAGTTATCATCAGATCT+TGG + Chr7:85115969-85115988 MsG0780040978.01.T01:intron 30.0%
! TTTTTCCTTGAATGTAGATC+TGG - Chr7:85116598-85116617 None:intergenic 30.0%
!!! TCCATCTCTGTTTTAAAAGA+AGG - Chr7:85116926-85116945 None:intergenic 30.0%
!!! TCCTTCTTTTAAAACAGAGA+TGG + Chr7:85116922-85116941 MsG0780040978.01.T01:intron 30.0%
!!! TCTTTTGAGGTCAAGATTAT+TGG - Chr7:85117989-85118008 None:intergenic 30.0%
!!! TTAAAGAGCATTTTGACTTC+AGG + Chr7:85117950-85117969 MsG0780040978.01.T01:CDS 30.0%
AACAGGAAAAATTCCAGACA+AGG + Chr7:85117912-85117931 MsG0780040978.01.T01:CDS 35.0%
ACCAAAAAACCAGAGGAAAT+TGG + Chr7:85117274-85117293 MsG0780040978.01.T01:CDS 35.0%
ACTAACATGGTTATGGTCTT+TGG + Chr7:85117082-85117101 MsG0780040978.01.T01:CDS 35.0%
ATCATTATTGACACCTATGG+TGG + Chr7:85117700-85117719 MsG0780040978.01.T01:CDS 35.0%
ATCATTCATATTGGCAGATC+TGG - Chr7:85116413-85116432 None:intergenic 35.0%
ATGTTTCTCTGCTTCTTTCT+TGG + Chr7:85116083-85116102 MsG0780040978.01.T01:intron 35.0%
CAATACGTTAGAAAGGAGTT+TGG - Chr7:85116763-85116782 None:intergenic 35.0%
CTCTTGTTGAAGATACACTT+CGG + Chr7:85118219-85118238 MsG0780040978.01.T01:three_prime_UTR 35.0%
GACATGTACAAAGACTAACA+TGG + Chr7:85117069-85117088 MsG0780040978.01.T01:CDS 35.0%
GTGTCAACAAATACAGAAAG+TGG - Chr7:85117886-85117905 None:intergenic 35.0%
TCTTGTTGAAGATACACTTC+GGG + Chr7:85118220-85118239 MsG0780040978.01.T01:three_prime_UTR 35.0%
TTCACCCAAAATCTGAAAGA+TGG - Chr7:85118165-85118184 None:intergenic 35.0%
TTGGTACTCAACAGTAACTT+GGG - Chr7:85117452-85117471 None:intergenic 35.0%
TTTGGTACTCAACAGTAACT+TGG - Chr7:85117453-85117472 None:intergenic 35.0%
! AAAGCTACTTCTAGTTGCTT+TGG - Chr7:85116473-85116492 None:intergenic 35.0%
! AGAGATGATGATGTCTTAGT+TGG + Chr7:85118295-85118314 MsG0780040978.01.T01:three_prime_UTR 35.0%
! GAGATGATGATGTCTTAGTT+GGG + Chr7:85118296-85118315 MsG0780040978.01.T01:three_prime_UTR 35.0%
! GTAGCCATCTTTCAGATTTT+GGG + Chr7:85118158-85118177 MsG0780040978.01.T01:three_prime_UTR 35.0%
!! TGTATGTGGAGTTGATGATA+AGG - Chr7:85116640-85116659 None:intergenic 35.0%
!! TGTCATCAAGGTATTTTGCT+GGG - Chr7:85117600-85117619 None:intergenic 35.0%
!! TTGTCATCAAGGTATTTTGC+TGG - Chr7:85117601-85117620 None:intergenic 35.0%
!!! ACCAATTTCCTCTGGTTTTT+TGG - Chr7:85117278-85117297 None:intergenic 35.0%
AATCTTGACCTCAAAAGAGG+TGG + Chr7:85117991-85118010 MsG0780040978.01.T01:CDS 40.0%
AATTCCAGACAAGGACATCT+TGG + Chr7:85117921-85117940 MsG0780040978.01.T01:CDS 40.0%
ACAAATACAGAAAGTGGCTC+TGG - Chr7:85117880-85117899 None:intergenic 40.0%
ATCTTCCATCTCAATCCATC+TGG + Chr7:85117625-85117644 MsG0780040978.01.T01:CDS 40.0%
CAAATACAGAAAGTGGCTCT+GGG - Chr7:85117879-85117898 None:intergenic 40.0%
CACATGCAACCTTACTTTCT+GGG - Chr7:85117048-85117067 None:intergenic 40.0%
CCACAGCTGAATGTTTATGA+TGG - Chr7:85116545-85116564 None:intergenic 40.0%
CCATCATAAACATTCAGCTG+TGG + Chr7:85116542-85116561 MsG0780040978.01.T01:intron 40.0%
CTTGTTGAAGATACACTTCG+GGG + Chr7:85118221-85118240 MsG0780040978.01.T01:three_prime_UTR 40.0%
CTTTGGTGAGATAACAACCA+AGG + Chr7:85117099-85117118 MsG0780040978.01.T01:CDS 40.0%
GAAAGAACAAAACATGCGCA+TGG + Chr7:85117407-85117426 MsG0780040978.01.T01:CDS 40.0%
GAAGGAAGAAAAACAAGGCA+TGG - Chr7:85116908-85116927 None:intergenic 40.0%
GAAGTGGGGCATATATTGTT+AGG + Chr7:85117779-85117798 MsG0780040978.01.T01:CDS 40.0%
GGTTTCCAGATCTACATTCA+AGG + Chr7:85116590-85116609 MsG0780040978.01.T01:intron 40.0%
GTGCAGGTTTCTTATGCAAT+TGG + Chr7:85117850-85117869 MsG0780040978.01.T01:CDS 40.0%
TACCAAAAGACTGCTGCATA+TGG + Chr7:85118024-85118043 MsG0780040978.01.T01:CDS 40.0%
TATGGATCTGCCAATAGTCA+CGG + Chr7:85116372-85116391 MsG0780040978.01.T01:intron 40.0%
TCACATGCAACCTTACTTTC+TGG - Chr7:85117049-85117068 None:intergenic 40.0%
TCACTTGACCAAAAAACCAG+AGG + Chr7:85117267-85117286 MsG0780040978.01.T01:CDS 40.0%
TGTCAAGATACTCAAGCCAA+AGG + Chr7:85118086-85118105 MsG0780040978.01.T01:CDS 40.0%
! AGGTATTTTGCTGGGATAAC+AGG - Chr7:85117592-85117611 None:intergenic 40.0%
! CATGTGCTTGCTACTAAACT+CGG + Chr7:85117364-85117383 MsG0780040978.01.T01:CDS 40.0%
! CCATAGCTCCGTTATCATTT+TGG - Chr7:85117471-85117490 None:intergenic 40.0%
! CGTAGCCATCTTTCAGATTT+TGG + Chr7:85118157-85118176 MsG0780040978.01.T01:three_prime_UTR 40.0%
! GTAACTTGGGTTTTACCATC+AGG - Chr7:85117439-85117458 None:intergenic 40.0%
!! CCAAAATGATAACGGAGCTA+TGG + Chr7:85117468-85117487 MsG0780040978.01.T01:CDS 40.0%
!! GGAAGATAGTCTTGTCATCA+AGG - Chr7:85117612-85117631 None:intergenic 40.0%
!! TTTGTTATTGGTGGACCTCA+TGG + Chr7:85117652-85117671 MsG0780040978.01.T01:CDS 40.0%
AAACCAGAGGAAATTGGTGC+TGG + Chr7:85117280-85117299 MsG0780040978.01.T01:CDS 45.0%
AACCAAGGTCGATAGAAGTG+GGG + Chr7:85117765-85117784 MsG0780040978.01.T01:CDS 45.0%
AACCTGATCACACAGCTTGT+CGG - Chr7:85116990-85117009 None:intergenic 45.0%
ACAAAACATGCGCATGGCTT+AGG + Chr7:85117413-85117432 MsG0780040978.01.T01:CDS 45.0%
ACCTCAGAATCTGTCAACGA+AGG + Chr7:85116959-85116978 MsG0780040978.01.T01:CDS 45.0%
ACCTTCGTTGACAGATTCTG+AGG - Chr7:85116963-85116982 None:intergenic 45.0%
AGAACCAAGATGTCCTTGTC+TGG - Chr7:85117928-85117947 None:intergenic 45.0%
AGCTTGCAAACTCAAGCCTT+TGG - Chr7:85118105-85118124 None:intergenic 45.0%
ATAGTTCGAGACACTTGCAG+AGG + Chr7:85117142-85117161 MsG0780040978.01.T01:CDS 45.0%
CAACCAAGGTCGATAGAAGT+GGG + Chr7:85117764-85117783 MsG0780040978.01.T01:CDS 45.0%
CACTTCTATCGACCTTGGTT+GGG - Chr7:85117765-85117784 None:intergenic 45.0%
CATAGCCAAACATGTGACCT+TGG - Chr7:85117309-85117328 None:intergenic 45.0%
CCAATAACAAACCGACCAGA+TGG - Chr7:85117643-85117662 None:intergenic 45.0%
CTCATAGTTCACAGTAGCCT+TGG - Chr7:85117119-85117138 None:intergenic 45.0%
CTGCAAACATGCATCAAGGA+TGG - Chr7:85117020-85117039 None:intergenic 45.0%
CTTGAGTTTGCAAGCTACCA+TGG + Chr7:85118109-85118128 MsG0780040978.01.T01:exon 45.0%
CTTGCTGCAAACATGCATCA+AGG - Chr7:85117024-85117043 None:intergenic 45.0%
GAGTTACGTACCAAATGTGG+TGG - Chr7:85115935-85115954 None:intergenic 45.0%
GATATCGCTCAAGGAGTTCA+TGG + Chr7:85117244-85117263 MsG0780040978.01.T01:CDS 45.0%
GGAGAGTTACGTACCAAATG+TGG - Chr7:85115938-85115957 None:intergenic 45.0%
GGATGATCCTGATTTCACCT+GGG + Chr7:85118059-85118078 MsG0780040978.01.T01:CDS 45.0%
GGATTCGTATCAGCTGATGT+TGG + Chr7:85117169-85117188 MsG0780040978.01.T01:CDS 45.0%
GTAGCAAGCACATGAGTAAG+TGG - Chr7:85117358-85117377 None:intergenic 45.0%
TACGTACCAAATGTGGTGGT+TGG - Chr7:85115931-85115950 None:intergenic 45.0%
TAGCTCAGGTGTTTCATCTG+TGG - Chr7:85117332-85117351 None:intergenic 45.0%
TATTGACACCTATGGTGGCT+GGG + Chr7:85117705-85117724 MsG0780040978.01.T01:CDS 45.0%
TCAAAAGAGGTGGCAACTTC+AGG + Chr7:85118001-85118020 MsG0780040978.01.T01:CDS 45.0%
TCCATCTCAATCCATCTGGT+CGG + Chr7:85117629-85117648 MsG0780040978.01.T01:CDS 45.0%
TGAACTCCTTGAGCGATATC+AGG - Chr7:85117244-85117263 None:intergenic 45.0%
TGAAGATACACTTCGGGGAT+TGG + Chr7:85118226-85118245 MsG0780040978.01.T01:three_prime_UTR 45.0%
TGAGTAAGTGGCATTAGCTC+AGG - Chr7:85117346-85117365 None:intergenic 45.0%
TTATTGACACCTATGGTGGC+TGG + Chr7:85117704-85117723 MsG0780040978.01.T01:CDS 45.0%
TTGGGCACGTTAGCTCAATA+GGG + Chr7:85118314-85118333 MsG0780040978.01.T01:three_prime_UTR 45.0%
! ACTGCTGCATATGGCCATTT+TGG + Chr7:85118033-85118052 MsG0780040978.01.T01:CDS 45.0%
! AGCTACCATGGCATTTCTAG+TGG + Chr7:85118121-85118140 MsG0780040978.01.T01:three_prime_UTR 45.0%
! CCAAAAGTGTGGTAGCTTCA+GGG + Chr7:85117809-85117828 MsG0780040978.01.T01:CDS 45.0%
! TGAAGTTGCCACCTCTTTTG+AGG - Chr7:85118002-85118021 None:intergenic 45.0%
!! CCATCTGGTCGGTTTGTTAT+TGG + Chr7:85117640-85117659 MsG0780040978.01.T01:CDS 45.0%
!! CTGCATATGGCCATTTTGGA+CGG + Chr7:85118037-85118056 MsG0780040978.01.T01:CDS 45.0%
!! TACCATGGCATTTCTAGTGG+TGG + Chr7:85118124-85118143 MsG0780040978.01.T01:three_prime_UTR 45.0%
!! TCTGGTCGGTTTGTTATTGG+TGG + Chr7:85117643-85117662 MsG0780040978.01.T01:CDS 45.0%
!! TGACAGATTCTGAGGTGAAG+AGG - Chr7:85116955-85116974 None:intergenic 45.0%
!! TGCATATGGCCATTTTGGAC+GGG + Chr7:85118038-85118057 MsG0780040978.01.T01:CDS 45.0%
ACAGTCTCCCAGGTGAAATC+AGG - Chr7:85118069-85118088 None:intergenic 50.0%
ACCTGATCACACAGCTTGTC+GGG - Chr7:85116989-85117008 None:intergenic 50.0%
AGATGAGGACAGTGTGCACA+CGG - Chr7:85117501-85117520 None:intergenic 50.0%
ATGTGGTGGTTGGAGTGAGA+AGG - Chr7:85115921-85115940 None:intergenic 50.0%
ATTGACACCTATGGTGGCTG+GGG + Chr7:85117706-85117725 MsG0780040978.01.T01:CDS 50.0%
CACCACCACTAGAAATGCCA+TGG - Chr7:85118129-85118148 None:intergenic 50.0%
CAGAGTCCTGATATCGCTCA+AGG + Chr7:85117235-85117254 MsG0780040978.01.T01:CDS 50.0%
CAGGATCATCCCGTCCAAAA+TGG - Chr7:85118050-85118069 None:intergenic 50.0%
CCAACCAAGGTCGATAGAAG+TGG + Chr7:85117763-85117782 MsG0780040978.01.T01:CDS 50.0%
CCACTTCTATCGACCTTGGT+TGG - Chr7:85117766-85117785 None:intergenic 50.0%
CGAGACACTTGCAGAGGAAT+TGG + Chr7:85117148-85117167 MsG0780040978.01.T01:CDS 50.0%
CTCACTCCAACCACCACATT+TGG + Chr7:85115922-85115941 MsG0780040978.01.T01:five_prime_UTR 50.0%
GAGTATCTTGACAGTCTCCC+AGG - Chr7:85118079-85118098 None:intergenic 50.0%
GCAGCAAGACCCAGAAAGTA+AGG + Chr7:85117036-85117055 MsG0780040978.01.T01:CDS 50.0%
GGGATGATCCTGATTTCACC+TGG + Chr7:85118058-85118077 MsG0780040978.01.T01:CDS 50.0%
GGTGACCAAGGTCACATGTT+TGG + Chr7:85117301-85117320 MsG0780040978.01.T01:CDS 50.0%
GTTGGGCACGTTAGCTCAAT+AGG + Chr7:85118313-85118332 MsG0780040978.01.T01:three_prime_UTR 50.0%
TACACTTCGGGGATTGGATG+TGG + Chr7:85118232-85118251 MsG0780040978.01.T01:three_prime_UTR 50.0%
TAGGCAAGCAGCCAAAAGTG+TGG + Chr7:85117798-85117817 MsG0780040978.01.T01:CDS 50.0%
TCACCAGCACCAATTTCCTC+TGG - Chr7:85117286-85117305 None:intergenic 50.0%
TGCAAGACGTTGCATTGTGC+AGG + Chr7:85117834-85117853 MsG0780040978.01.T01:CDS 50.0%
TGGGCACGTTAGCTCAATAG+GGG + Chr7:85118315-85118334 MsG0780040978.01.T01:three_prime_UTR 50.0%
TTCGGGGATTGGATGTGGAA+AGG + Chr7:85118237-85118256 MsG0780040978.01.T01:three_prime_UTR 50.0%
! CATCGTGCTGAGTTGAGATG+AGG - Chr7:85117516-85117535 None:intergenic 50.0%
! CCCTGAAGCTACCACACTTT+TGG - Chr7:85117812-85117831 None:intergenic 50.0%
! GCCAAAAGTGTGGTAGCTTC+AGG + Chr7:85117808-85117827 MsG0780040978.01.T01:CDS 50.0%
! GGCCATATGCAGCAGTCTTT+TGG - Chr7:85118029-85118048 None:intergenic 50.0%
!! ACCGACCAGATGGATTGAGA+TGG - Chr7:85117633-85117652 None:intergenic 50.0%
!! CATGGCATTTCTAGTGGTGG+TGG + Chr7:85118127-85118146 MsG0780040978.01.T01:three_prime_UTR 50.0%
!! GAAATTGGTGCTGGTGACCA+AGG + Chr7:85117289-85117308 MsG0780040978.01.T01:CDS 50.0%
!!! GAGCATTTTGACTTCAGGCC+AGG + Chr7:85117955-85117974 MsG0780040978.01.T01:CDS 50.0%
AGGACAGTGTGCACACGGAT+TGG - Chr7:85117496-85117515 None:intergenic 55.0%
CATGGAGATGCAGGACTCAC+TGG + Chr7:85117670-85117689 MsG0780040978.01.T01:CDS 55.0%
CCTGATCACACAGCTTGTCG+GGG - Chr7:85116988-85117007 None:intergenic 55.0%
GAGATGCAGGACTCACTGGT+AGG + Chr7:85117674-85117693 MsG0780040978.01.T01:CDS 55.0%
GGACAGTGTGCACACGGATT+GGG - Chr7:85117495-85117514 None:intergenic 55.0%
GTGAGTCCTGCATCTCCATG+AGG - Chr7:85117670-85117689 None:intergenic 55.0%
TGCCCCACTTCTATCGACCT+TGG - Chr7:85117770-85117789 None:intergenic 55.0%
ATGAGCACCCCAGCCACCAT+AGG - Chr7:85117716-85117735 None:intergenic 60.0%
CCCCGACAAGCTGTGTGATC+AGG + Chr7:85116985-85117004 MsG0780040978.01.T01:CDS 60.0%
CTCTGGCAAGGACCCAACCA+AGG + Chr7:85117750-85117769 MsG0780040978.01.T01:CDS 60.0%
GGTGGACCTCATGGAGATGC+AGG + Chr7:85117661-85117680 MsG0780040978.01.T01:CDS 60.0%
GGTTGGGTCCTTGCCAGAGA+AGG - Chr7:85117749-85117768 None:intergenic 60.0%
TGCGCATGGCTTAGGCCTGA+TGG + Chr7:85117421-85117440 MsG0780040978.01.T01:CDS 60.0%
! TATGGTGGCTGGGGTGCTCA+TGG + Chr7:85117715-85117734 MsG0780040978.01.T01:CDS 60.0%
!! AGGAGGTGCCTTCTCTGGCA+AGG + Chr7:85117738-85117757 MsG0780040978.01.T01:CDS 60.0%
!! CATGGAGGAGGTGCCTTCTC+TGG + Chr7:85117733-85117752 MsG0780040978.01.T01:CDS 60.0%
! GGCTGGGGTGCTCATGGAGG+AGG + Chr7:85117721-85117740 MsG0780040978.01.T01:CDS 70.0%
! GGTGGCTGGGGTGCTCATGG+AGG + Chr7:85117718-85117737 MsG0780040978.01.T01:CDS 70.0%
Chromosome Type Strat End Strand Name
Chr7 gene 85115891 85118422 85115891 ID=MsG0780040978.01;Name=MsG0780040978.01
Chr7 mRNA 85115891 85118422 85115891 ID=MsG0780040978.01.T01;Parent=MsG0780040978.01;Name=MsG0780040978.01.T01;_AED=0.37;_eAED=0.37;_QI=53|0|0.5|1|0|0.5|2|309|390
Chr7 exon 85115891 85115943 85115891 ID=MsG0780040978.01.T01:exon:11684;Parent=MsG0780040978.01.T01
Chr7 exon 85116941 85118422 85116941 ID=MsG0780040978.01.T01:exon:11685;Parent=MsG0780040978.01.T01
Chr7 five_prime_UTR 85115891 85115943 85115891 ID=MsG0780040978.01.T01:five_prime_utr;Parent=MsG0780040978.01.T01
Chr7 CDS 85116941 85118113 85116941 ID=MsG0780040978.01.T01:cds;Parent=MsG0780040978.01.T01
Chr7 three_prime_UTR 85118114 85118422 85118114 ID=MsG0780040978.01.T01:three_prime_utr;Parent=MsG0780040978.01.T01
Gene Sequence

>MsG0780040978.01.T01

ATGGAAACTTTCCTCTTCACCTCAGAATCTGTCAACGAAGGTCACCCCGACAAGCTGTGTGATCAGGTTTCAGATGCCATCCTTGATGCATGTTTGCAGCAAGACCCAGAAAGTAAGGTTGCATGTGAGACATGTACAAAGACTAACATGGTTATGGTCTTTGGTGAGATAACAACCAAGGCTACTGTGAACTATGAGAAAATAGTTCGAGACACTTGCAGAGGAATTGGATTCGTATCAGCTGATGTTGGTCTTGATGCTGATAACTGCAAAGTTCTTGTCAACATTGAGCAACAGAGTCCTGATATCGCTCAAGGAGTTCATGGTCACTTGACCAAAAAACCAGAGGAAATTGGTGCTGGTGACCAAGGTCACATGTTTGGCTATGCCACAGATGAAACACCTGAGCTAATGCCACTTACTCATGTGCTTGCTACTAAACTCGGTGCAAAGCTCACTGAAGTTAGAAAGAACAAAACATGCGCATGGCTTAGGCCTGATGGTAAAACCCAAGTTACTGTTGAGTACCAAAATGATAACGGAGCTATGGTCCCAATCCGTGTGCACACTGTCCTCATCTCAACTCAGCACGATGAAACTGTCACAAATGAAAAAATTGCTGCAGATTTAAAAGAGCATGTGATTAAACCTGTTATCCCAGCAAAATACCTTGATGACAAGACTATCTTCCATCTCAATCCATCTGGTCGGTTTGTTATTGGTGGACCTCATGGAGATGCAGGACTCACTGGTAGGAAGATCATTATTGACACCTATGGTGGCTGGGGTGCTCATGGAGGAGGTGCCTTCTCTGGCAAGGACCCAACCAAGGTCGATAGAAGTGGGGCATATATTGTTAGGCAAGCAGCCAAAAGTGTGGTAGCTTCAGGGCTTGCAAGACGTTGCATTGTGCAGGTTTCTTATGCAATTGGAGTCCCAGAGCCACTTTCTGTATTTGTTGACACATACAAAACAGGAAAAATTCCAGACAAGGACATCTTGGTTCTTATTAAAGAGCATTTTGACTTCAGGCCAGGAATGATTTCCAATAATCTTGACCTCAAAAGAGGTGGCAACTTCAGGTACCAAAAGACTGCTGCATATGGCCATTTTGGACGGGATGATCCTGATTTCACCTGGGAGACTGTCAAGATACTCAAGCCAAAGGCTTGA

Protein sequence

>MsG0780040978.01.T01

METFLFTSESVNEGHPDKLCDQVSDAILDACLQQDPESKVACETCTKTNMVMVFGEITTKATVNYEKIVRDTCRGIGFVSADVGLDADNCKVLVNIEQQSPDIAQGVHGHLTKKPEEIGAGDQGHMFGYATDETPELMPLTHVLATKLGAKLTEVRKNKTCAWLRPDGKTQVTVEYQNDNGAMVPIRVHTVLISTQHDETVTNEKIAADLKEHVIKPVIPAKYLDDKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSVVASGLARRCIVQVSYAIGVPEPLSVFVDTYKTGKIPDKDILVLIKEHFDFRPGMISNNLDLKRGGNFRYQKTAAYGHFGRDDPDFTWETVKILKPKA*