AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480020885.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480020885.01.T01 MTR_4g062080 92.938 354 24 1 1 353 1 354 0.0 677
MsG0480020885.01.T01 MTR_4g062080 92.938 354 24 1 1 353 1 354 0.0 676
MsG0480020885.01.T01 MTR_3g117360 87.955 357 38 2 1 353 1 356 0.0 645
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480020885.01.T01 AT4G16440 66.667 357 108 4 1 353 1 350 1.84e-172 489

Find 134 sgRNAs with CRISPR-Local

Find 328 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCGACAATCCCATTATTAA+AGG 0.175783 4:-50079732 MsG0480020885.01.T01:three_prime_UTR
ATTGACAACTGGAGAGATTT+TGG 0.210835 4:-50081710 MsG0480020885.01.T01:CDS
TATCTTTCCTTCATTAATAT+TGG 0.216704 4:+50083029 None:intergenic
CTTCACGCCCTTCGTCAAAA+TGG 0.223433 4:+50081767 None:intergenic
GTCATATAACCCTTTAATAA+TGG 0.227792 4:+50079722 None:intergenic
ATTGAAGCAGGTTGCTTAAA+TGG 0.228855 4:-50079954 MsG0480020885.01.T01:intron
GAAGGCAAAGCAAGAGATTT+TGG 0.233283 4:-50079379 MsG0480020885.01.T01:three_prime_UTR
GAAGAGGAGAAATGCGAAAA+TGG 0.233486 4:+50082962 None:intergenic
TACAAATACCTTGACTTTAT+CGG 0.264601 4:+50083527 None:intergenic
TTGAAATTTGCTCTCTGTTA+TGG 0.288305 4:-50080147 MsG0480020885.01.T01:three_prime_UTR
TTAGCAGATTGACCTGAAAT+TGG 0.296829 4:+50079915 None:intergenic
TCATATAACCCTTTAATAAT+GGG 0.304007 4:+50079723 None:intergenic
CCGTTTCGGACCCGTGTACT+TGG 0.304345 4:+50079496 None:intergenic
AGGGAATGGAATGGATAAAA+AGG 0.307146 4:-50079565 MsG0480020885.01.T01:three_prime_UTR
TATGGGGTCCGTGGAAGTTC+TGG 0.307513 4:-50081416 MsG0480020885.01.T01:CDS
GAAATCATGGCATGCCCTTC+AGG 0.309701 4:-50080060 MsG0480020885.01.T01:intron
TGCTTATAGATAATATTTAC+TGG 0.326150 4:-50084048 MsG0480020885.01.T01:five_prime_UTR
TTCTCTCCAGCTATTCGAAT+TGG 0.333433 4:-50083618 MsG0480020885.01.T01:CDS
GAGTCGAGTATTACTCTTCT+TGG 0.333606 4:-50080216 MsG0480020885.01.T01:three_prime_UTR
GGTCAAATAAAACCAATTTC+AGG 0.333903 4:-50079927 MsG0480020885.01.T01:three_prime_UTR
AATGAAGAAGGACACCTCTA+TGG 0.340743 4:-50081434 MsG0480020885.01.T01:CDS
GAAATCTGATTATCATTTCC+TGG 0.344420 4:-50080082 MsG0480020885.01.T01:three_prime_UTR
AAGGGCATGCCATGATTTCC+AGG 0.367522 4:+50080064 None:intergenic
CAAAAGCGTTCTTTCCGTTT+CGG 0.374373 4:+50079482 None:intergenic
TTGAAGCAGGTTGCTTAAAT+GGG 0.377891 4:-50079953 MsG0480020885.01.T01:intron
ACAAATACCTTGACTTTATC+GGG 0.392205 4:+50083528 None:intergenic
AAGTTTAGAAGAGGCTCCTT+TGG 0.395536 4:-50081566 MsG0480020885.01.T01:CDS
GGGAAGGTCGGCGTTGGTGC+TGG 0.404145 4:+50083960 None:intergenic
TCGACAATCCCATTATTAAA+GGG 0.405444 4:-50079731 MsG0480020885.01.T01:three_prime_UTR
GTTAGAGAGGAGGGTTTAAG+AGG 0.406041 4:+50084021 None:intergenic
GCGCTATCTATGCCAAGATA+TGG 0.407389 4:-50082047 MsG0480020885.01.T01:CDS
GTGACATGGTATACTTCTTC+TGG 0.412545 4:+50081856 None:intergenic
ACTCCTAGCTTTCTCAGAAC+CGG 0.412794 4:+50079683 None:intergenic
ATTGCTGAATAAGCAAGGTT+TGG 0.420769 4:-50083064 MsG0480020885.01.T01:CDS
AGGTGAAGCTAACATGATTT+CGG 0.424971 4:-50081746 MsG0480020885.01.T01:CDS
CAAACCTGAGCTCCATATCT+TGG 0.428063 4:+50082035 None:intergenic
AAGAGTCCTCAACAAACAAT+TGG 0.429058 4:-50082082 MsG0480020885.01.T01:CDS
GTAGATTCTGTATTGACAAC+TGG 0.430228 4:-50081721 MsG0480020885.01.T01:CDS
TTATCATTTCCTGGAAATCA+TGG 0.431616 4:-50080073 MsG0480020885.01.T01:three_prime_UTR
TCATTGTCTGTGCAGGTTGA+TGG 0.435322 4:-50080180 MsG0480020885.01.T01:three_prime_UTR
CAGAATTAGATTAGGTCCTA+AGG 0.437170 4:-50079247 MsG0480020885.01.T01:three_prime_UTR
TATGCTGCTAAAACACTGTT+TGG 0.437680 4:-50081368 MsG0480020885.01.T01:CDS
TTCACGCCCTTCGTCAAAAT+GGG 0.443882 4:+50081768 None:intergenic
TTCTAAATCATTGTCTGTGC+AGG 0.446786 4:-50080187 MsG0480020885.01.T01:three_prime_UTR
CGTCAAAATGGGACTCTAGT+TGG 0.450553 4:+50081779 None:intergenic
CTGATGAAATGTAAGGTAGA+AGG 0.453837 4:+50082107 None:intergenic
ACATCTCCAATTCGAATAGC+TGG 0.455821 4:+50083612 None:intergenic
GTTGGTGCTGGCACGGTGCT+CGG 0.457906 4:+50083972 None:intergenic
TTTCTGTCCAATATTAATGA+AGG 0.462950 4:-50083036 MsG0480020885.01.T01:CDS
TCAAGGATTGCTTGGCATGC+AGG 0.472201 4:-50083379 MsG0480020885.01.T01:intron
AAGGTATAGACAAAATCAAT+TGG 0.473309 4:-50082717 MsG0480020885.01.T01:CDS
GCATATTTCTTATATGTTAG+CGG 0.474809 4:-50079430 MsG0480020885.01.T01:three_prime_UTR
TGTCTGTTTCTCCACAGTCA+AGG 0.474812 4:-50082999 MsG0480020885.01.T01:CDS
CCAAGTACACGGGTCCGAAA+CGG 0.482003 4:-50079496 MsG0480020885.01.T01:three_prime_UTR
AGTTTCGCTCAAGGATTGCT+TGG 0.483125 4:-50083387 MsG0480020885.01.T01:CDS
GTCTGTTTCTCCACAGTCAA+GGG 0.486411 4:-50082998 MsG0480020885.01.T01:CDS
GTTATTAGAATCAGTTTACA+TGG 0.487851 4:-50079880 MsG0480020885.01.T01:three_prime_UTR
ATCTGTTAAAGTTTCGCTCA+AGG 0.492890 4:-50083396 MsG0480020885.01.T01:CDS
TAGATACACCCTTACTAAAG+TGG 0.496412 4:+50080763 None:intergenic
AAGAAGGAATAGCGGAGAAG+AGG 0.497532 4:-50079542 MsG0480020885.01.T01:three_prime_UTR
GCGTCGATCGTTAGAGAGGA+GGG 0.500605 4:+50084012 None:intergenic
AAGAGGAGAAATGCGAAAAT+GGG 0.501594 4:+50082963 None:intergenic
TTTCAAATCCTTGGGTGTGA+GGG 0.502114 4:-50082804 MsG0480020885.01.T01:CDS
GGTCGGCGTTGGTGCTGGCA+CGG 0.504810 4:+50083965 None:intergenic
TCACTTCTGAGTTACATGAT+TGG 0.508150 4:-50079623 MsG0480020885.01.T01:three_prime_UTR
AGAAGCGTCGATCGTTAGAG+AGG 0.510065 4:+50084008 None:intergenic
GAAGGGACAGAGAATATCTT+CGG 0.511132 4:+50083928 None:intergenic
CATCTTAACTCAGAACCCTT+AGG 0.513378 4:+50079231 None:intergenic
ATGAAGAAGGACACCTCTAT+GGG 0.516212 4:-50081433 MsG0480020885.01.T01:CDS
ATCAATCTCAGAATTAGATT+AGG 0.517748 4:-50079255 MsG0480020885.01.T01:three_prime_UTR
CATTGTGAATTGCATCTACT+CGG 0.520500 4:-50079406 MsG0480020885.01.T01:three_prime_UTR
CTCCTAGCTTTCTCAGAACC+GGG 0.522879 4:+50079684 None:intergenic
ATGCTGATGCAACCATTGGC+AGG 0.523901 4:+50082669 None:intergenic
GCTGGCACGGTGCTCGGAGA+CGG 0.526870 4:+50083978 None:intergenic
CTCTTCACTGATGAAATGTA+AGG 0.526959 4:+50082100 None:intergenic
CTATCTAATATTAATGAAGA+AGG 0.529771 4:-50081446 MsG0480020885.01.T01:CDS
CACGGTGCTCGGAGACGGAT+AGG 0.530855 4:+50083983 None:intergenic
GAGAAAAGTGTAACCTGAAG+AGG 0.535679 4:+50082946 None:intergenic
TTAATGTTTCTAAAGTTCAA+AGG 0.537229 4:+50081329 None:intergenic
ACCAACGCCGACCTTCCCTC+TGG 0.538154 4:-50083955 MsG0480020885.01.T01:five_prime_UTR
GTAAATATTATCTATAAGCA+TGG 0.540062 4:+50084051 None:intergenic
ACCAGAGGGAAGGTCGGCGT+TGG 0.542691 4:+50083954 None:intergenic
AGCCCGGTTCTGAGAAAGCT+AGG 0.544108 4:-50079686 MsG0480020885.01.T01:three_prime_UTR
TTAATAATGGGATTGTCGAA+TGG 0.545432 4:+50079735 None:intergenic
TATGCCAAGATATGGAGCTC+AGG 0.551356 4:-50082039 MsG0480020885.01.T01:intron
TTGCATCTACTCGGTTCTGA+AGG 0.558821 4:-50079397 MsG0480020885.01.T01:three_prime_UTR
GACCCTTGTTGAATCTTGTG+TGG 0.563614 4:-50082750 MsG0480020885.01.T01:CDS
ATGGTTGCATCAGCATGTCC+AGG 0.564998 4:-50082662 MsG0480020885.01.T01:intron
AGAATTAGATTAGGTCCTAA+GGG 0.569905 4:-50079246 MsG0480020885.01.T01:three_prime_UTR
TGCTATGCTGAGAAGAGTCA+TGG 0.578413 4:-50082136 MsG0480020885.01.T01:CDS
GTTTCTTACAGTTTATCCAA+AGG 0.579033 4:+50081550 None:intergenic
CTGTTTGGAAGACATATTGA+CGG 0.579858 4:-50081353 MsG0480020885.01.T01:CDS
AGCGTCGATCGTTAGAGAGG+AGG 0.580171 4:+50084011 None:intergenic
GGACATGCTGATGCAACCAT+TGG 0.582441 4:+50082665 None:intergenic
GACAAGTGGCTCGAGCAGCC+CGG 0.584645 4:-50079702 MsG0480020885.01.T01:three_prime_UTR
TTAAAGGGTTATATGACAAG+TGG 0.587055 4:-50079716 MsG0480020885.01.T01:three_prime_UTR
TGTTTGGAAGACATATTGAC+GGG 0.587802 4:-50081352 MsG0480020885.01.T01:CDS
AGAGCGGAAAGGGAATGGAA+TGG 0.588267 4:-50079574 MsG0480020885.01.T01:three_prime_UTR
TTAGAGAGGAGGGTTTAAGA+GGG 0.591717 4:+50084022 None:intergenic
GGACACCTCTATGGGGTCCG+TGG 0.592297 4:-50081425 MsG0480020885.01.T01:CDS
TGAAGCAGGTTGCTTAAATG+GGG 0.595011 4:-50079952 MsG0480020885.01.T01:intron
CGTAACCTCCAGAACTTCCA+CGG 0.596666 4:+50081408 None:intergenic
AACTTCCACGGACCCCATAG+AGG 0.600693 4:+50081420 None:intergenic
TAAATATTATCTATAAGCAT+GGG 0.600709 4:+50084052 None:intergenic
ACAGTATTGCTGAATAAGCA+AGG 0.602784 4:-50083069 MsG0480020885.01.T01:CDS
ATAGTTCCAATTGTTTGTTG+AGG 0.602965 4:+50082076 None:intergenic
AGCATGCATAGTATCCCTCA+AGG 0.603755 4:-50083565 MsG0480020885.01.T01:CDS
GAATATCTTCGGAGAACCAG+AGG 0.605272 4:+50083939 None:intergenic
GATACTATGCATGCTTGTGA+AGG 0.606476 4:+50083573 None:intergenic
ATCAATTGGTAGATGATGAG+AGG 0.606739 4:-50082703 MsG0480020885.01.T01:CDS
GAGTAAGTCAAGCCTGCCAA+TGG 0.609051 4:-50082681 MsG0480020885.01.T01:CDS
GCAATAGAAGCCCTTGACTG+TGG 0.617711 4:+50082988 None:intergenic
CGGAGAACCAGAGGGAAGGT+CGG 0.618188 4:+50083948 None:intergenic
CCCGTGTACTTGGTATCTAG+AGG 0.620791 4:+50079506 None:intergenic
TCCTCTAGATACCAAGTACA+CGG 0.626199 4:-50079507 MsG0480020885.01.T01:three_prime_UTR
GGGGTCCGTGGAAGTTCTGG+AGG 0.631370 4:-50081413 MsG0480020885.01.T01:CDS
ATAAGAAATATGCAACATTG+AGG 0.636043 4:+50079440 None:intergenic
TGAGAAATATGGTACCTGAA+GGG 0.643524 4:+50080046 None:intergenic
ATTCCACACAAGATTCAACA+AGG 0.647355 4:+50082747 None:intergenic
CTTGTGTGGAATTCATCGCA+AGG 0.651706 4:-50082736 MsG0480020885.01.T01:CDS
AATCTGCTAAAGATCTGAGT+CGG 0.657287 4:-50079902 MsG0480020885.01.T01:three_prime_UTR
AATATCTTCGGAGAACCAGA+GGG 0.660871 4:+50083940 None:intergenic
GAAGCAGGTTGCTTAAATGG+GGG 0.663561 4:-50079951 MsG0480020885.01.T01:intron
GCATGCATAGTATCCCTCAA+GGG 0.665212 4:-50083564 MsG0480020885.01.T01:CDS
TCTTCGGAGAACCAGAGGGA+AGG 0.669802 4:+50083944 None:intergenic
CGAGTAGATGCAATTCACAA+TGG 0.677543 4:+50079407 None:intergenic
TGAAGCTAACATGATTTCGG+AGG 0.679455 4:-50081743 MsG0480020885.01.T01:CDS
TGAAATGTAAGGTAGAAGGA+CGG 0.685364 4:+50082111 None:intergenic
CCTCTAGATACCAAGTACAC+GGG 0.687630 4:-50079506 MsG0480020885.01.T01:three_prime_UTR
AACAAGGCATCACAGTGACA+TGG 0.687893 4:+50081842 None:intergenic
TTGTTATTTGAAGGTCACAG+TGG 0.716529 4:-50083441 MsG0480020885.01.T01:intron
TGAAGAAGGACACCTCTATG+GGG 0.722848 4:-50081432 MsG0480020885.01.T01:CDS
TCTGAGTTACATGATTGGTG+AGG 0.729140 4:-50079618 MsG0480020885.01.T01:three_prime_UTR
TTCCACACAAGATTCAACAA+GGG 0.745421 4:+50082748 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATATATATATATATATAT+AGG - Chr4:50081956-50081975 MsG0480020885.01.T01:intron 0.0%
!! ATATATATATATATATATAT+GGG + Chr4:50081975-50081956 None:intergenic 0.0%
!! TATATATATATATATATATA+GGG - Chr4:50081955-50081974 MsG0480020885.01.T01:intron 0.0%
!! TATATATATATATATATATA+TGG + Chr4:50081974-50081955 None:intergenic 0.0%
!! ATGCATAATAATAAATTCAA+GGG - Chr4:50082386-50082405 MsG0480020885.01.T01:intron 15.0%
!! TATGCATAATAATAAATTCA+AGG - Chr4:50082385-50082404 MsG0480020885.01.T01:intron 15.0%
!!! ATTAGTTTGGTATTTTATTT+AGG - Chr4:50082713-50082732 MsG0480020885.01.T01:CDS 15.0%
!!! ATTATGAAATGTTTTTTCAT+AGG + Chr4:50082493-50082512 None:intergenic 15.0%
!! AAATAACAAACAAGTTTCTT+TGG + Chr4:50079757-50079776 None:intergenic 20.0%
!! AATAACAAACAAGTTTCTTT+GGG + Chr4:50079756-50079775 None:intergenic 20.0%
!! AATTTAACAATTAACAACAC+TGG + Chr4:50079525-50079544 None:intergenic 20.0%
!! ATATATGTAAAATTCTTGTG+AGG - Chr4:50082296-50082315 MsG0480020885.01.T01:intron 20.0%
!! CAAAATAAACTTAGAAACTA+CGG + Chr4:50080090-50080109 None:intergenic 20.0%
!! CTATCTAATATTAATGAAGA+AGG - Chr4:50081763-50081782 MsG0480020885.01.T01:CDS 20.0%
!! TAATAACAGAAAGAAAATAG+AGG + Chr4:50079382-50079401 None:intergenic 20.0%
!! TATATAATTTCAAATGTCCT+AGG + Chr4:50082347-50082366 None:intergenic 20.0%
!! TATCTTTCCTTCATTAATAT+TGG + Chr4:50080183-50080202 None:intergenic 20.0%
!! TCATATAACCCTTTAATAAT+GGG + Chr4:50083489-50083508 None:intergenic 20.0%
!! TCGTAATGAAGATAAATATA+AGG - Chr4:50082633-50082652 MsG0480020885.01.T01:intron 20.0%
!! TGCTTATAGATAATATTTAC+TGG - Chr4:50079161-50079180 MsG0480020885.01.T01:three_prime_UTR 20.0%
!! TTCATAATGACTTAAAACTT+CGG - Chr4:50082505-50082524 MsG0480020885.01.T01:intron 20.0%
!!! AAAGAGTATGATAAAAATGA+AGG + Chr4:50081556-50081575 None:intergenic 20.0%
!!! ACTTTTATTTTGTTATGCTT+GGG - Chr4:50079866-50079885 MsG0480020885.01.T01:intron 20.0%
!!! ATTATGTTTCTGTATATGAT+AGG - Chr4:50083437-50083456 MsG0480020885.01.T01:intron 20.0%
!!! ATTATTCTGAATTTAGAACT+AGG - Chr4:50080809-50080828 MsG0480020885.01.T01:intron 20.0%
!!! CATTTTTGAGTTAGAAATAT+GGG - Chr4:50080927-50080946 MsG0480020885.01.T01:intron 20.0%
!!! TCATTTTTGAGTTAGAAATA+TGG - Chr4:50080926-50080945 MsG0480020885.01.T01:intron 20.0%
!!! TCTATTTTCTTTCTGTTATT+AGG - Chr4:50079381-50079400 MsG0480020885.01.T01:three_prime_UTR 20.0%
!!! TGAAGGTATAAAGATATATT+GGG - Chr4:50080766-50080785 MsG0480020885.01.T01:intron 20.0%
!!! TGATTTTAAAAGTTTAGAAG+AGG - Chr4:50081634-50081653 MsG0480020885.01.T01:intron 20.0%
!!! TTAATGTTTCTAAAGTTCAA+AGG + Chr4:50081883-50081902 None:intergenic 20.0%
!!! TTTCATAGATTTTTTGTGTT+AGG - Chr4:50083872-50083891 MsG0480020885.01.T01:intron 20.0%
!!! TTTTAAATACGCAGAAATAT+AGG - Chr4:50080968-50080987 MsG0480020885.01.T01:intron 20.0%
! AAGAACAATGCATGTTATTA+AGG - Chr4:50082416-50082435 MsG0480020885.01.T01:intron 25.0%
! AAGGTATAGACAAAATCAAT+TGG - Chr4:50080492-50080511 MsG0480020885.01.T01:intron 25.0%
! ACAAATGAATCACAATAGAA+AGG + Chr4:50080900-50080919 None:intergenic 25.0%
! ATAACAAAATAAAAGTGGAG+GGG + Chr4:50079862-50079881 None:intergenic 25.0%
! ATAAGAAATATGCAACATTG+AGG + Chr4:50083772-50083791 None:intergenic 25.0%
! ATCAATCTCAGAATTAGATT+AGG - Chr4:50083954-50083973 MsG0480020885.01.T01:five_prime_UTR 25.0%
! ATTATGCCAAAAATGAAAAC+AGG - Chr4:50083104-50083123 MsG0480020885.01.T01:intron 25.0%
! CAAGCATAACAAAATAAAAG+TGG + Chr4:50079867-50079886 None:intergenic 25.0%
! CATAACAAAATAAAAGTGGA+GGG + Chr4:50079863-50079882 None:intergenic 25.0%
! CTTAGAATATTACACCTTAT+TGG - Chr4:50082835-50082854 MsG0480020885.01.T01:intron 25.0%
! CTTATAACCTATGTTAGATT+TGG - Chr4:50081282-50081301 MsG0480020885.01.T01:intron 25.0%
! GCATATTTCTTATATGTTAG+CGG - Chr4:50083779-50083798 MsG0480020885.01.T01:intron 25.0%
! GTCATATAACCCTTTAATAA+TGG + Chr4:50083490-50083509 None:intergenic 25.0%
! GTGTATATTAAGTCATGTTT+GGG - Chr4:50081587-50081606 MsG0480020885.01.T01:CDS 25.0%
! GTTATTAGAATCAGTTTACA+TGG - Chr4:50083329-50083348 MsG0480020885.01.T01:intron 25.0%
! TACAAATACCTTGACTTTAT+CGG + Chr4:50079685-50079704 None:intergenic 25.0%
! TACAGAAACATAATCATTTC+TGG + Chr4:50083431-50083450 None:intergenic 25.0%
! TGTGTATATTAAGTCATGTT+TGG - Chr4:50081586-50081605 MsG0480020885.01.T01:CDS 25.0%
! TTATGCCAAAAATGAAAACA+GGG - Chr4:50083105-50083124 MsG0480020885.01.T01:intron 25.0%
! TTGGATTTAATAACTTGAGA+GGG - Chr4:50081194-50081213 MsG0480020885.01.T01:intron 25.0%
! TTTCTGTCCAATATTAATGA+AGG - Chr4:50080173-50080192 MsG0480020885.01.T01:three_prime_UTR 25.0%
! TTTGGATTTAATAACTTGAG+AGG - Chr4:50081193-50081212 MsG0480020885.01.T01:intron 25.0%
!! AAACAGAAGTATAAAAAGAG+CGG - Chr4:50083619-50083638 MsG0480020885.01.T01:CDS 25.0%
!! GTGAAGGTATAAAGATATAT+TGG - Chr4:50080765-50080784 MsG0480020885.01.T01:intron 25.0%
!! TTCAAACTTCTAAGAATTTC+AGG - Chr4:50080360-50080379 MsG0480020885.01.T01:intron 25.0%
!! TTTCTGTATATGATAGGTTT+TGG - Chr4:50083443-50083462 MsG0480020885.01.T01:intron 25.0%
!!! AAGTTTATTTTGTAATGCAG+TGG - Chr4:50080098-50080117 MsG0480020885.01.T01:three_prime_UTR 25.0%
!!! ACAAGATTTTTCAAATCCTT+GGG - Chr4:50080397-50080416 MsG0480020885.01.T01:intron 25.0%
!!! CACTTTTATTTTGTTATGCT+TGG - Chr4:50079865-50079884 MsG0480020885.01.T01:intron 25.0%
!!! GAAACTTGTTTGTTATTTGA+AGG - Chr4:50079759-50079778 MsG0480020885.01.T01:intron 25.0%
!!! TTTTTTTTTCCTCTTTTCAG+AGG - Chr4:50083391-50083410 MsG0480020885.01.T01:CDS 25.0%
AAAGTGAAAATCACACCTTA+AGG + Chr4:50082080-50082099 None:intergenic 30.0%
AACATGCATTGTTCTTCAAA+TGG + Chr4:50082412-50082431 None:intergenic 30.0%
AAGTATAAAAAGAGCGGAAA+GGG - Chr4:50083625-50083644 MsG0480020885.01.T01:CDS 30.0%
AATGAATCACAATAGAAAGG+AGG + Chr4:50080897-50080916 None:intergenic 30.0%
ACAAATACCTTGACTTTATC+GGG + Chr4:50079684-50079703 None:intergenic 30.0%
ACACCTTCATAAAAGTAAGT+TGG - Chr4:50082122-50082141 MsG0480020885.01.T01:CDS 30.0%
AGAATTAGATTAGGTCCTAA+GGG - Chr4:50083963-50083982 MsG0480020885.01.T01:five_prime_UTR 30.0%
AGGAAATCAAACTAGAATTC+AGG - Chr4:50080829-50080848 MsG0480020885.01.T01:intron 30.0%
AGTGTATGACTAATTACGTA+AGG - Chr4:50080683-50080702 MsG0480020885.01.T01:intron 30.0%
ATAAAAGACACCTTCACAAA+AGG - Chr4:50082177-50082196 MsG0480020885.01.T01:intron 30.0%
ATCAGCAAATACATGTCTAA+GGG - Chr4:50080715-50080734 MsG0480020885.01.T01:intron 30.0%
ATGTAAAATTCTTGTGAGGA+AGG - Chr4:50082300-50082319 MsG0480020885.01.T01:intron 30.0%
ATTGTAAAAACTTGCCTCTA+GGG + Chr4:50081929-50081948 None:intergenic 30.0%
CTTACCTAAAAAAGAGAGAA+GGG + Chr4:50079306-50079325 None:intergenic 30.0%
GAAATCTGATTATCATTTCC+TGG - Chr4:50083127-50083146 MsG0480020885.01.T01:intron 30.0%
GAGCAATCTGAACAATAATA+TGG + Chr4:50082692-50082711 None:intergenic 30.0%
GCATAACAAAATAAAAGTGG+AGG + Chr4:50079864-50079883 None:intergenic 30.0%
GGAATAGGATAATCCATAAT+AGG + Chr4:50082813-50082832 None:intergenic 30.0%
GGGTGTATCTAACTATATAA+AGG - Chr4:50082458-50082477 MsG0480020885.01.T01:intron 30.0%
GGTCAAATAAAACCAATTTC+AGG - Chr4:50083282-50083301 MsG0480020885.01.T01:intron 30.0%
GTAATATTCTAAGCTGGAAT+AGG + Chr4:50082828-50082847 None:intergenic 30.0%
GTTTCTTACAGTTTATCCAA+AGG + Chr4:50081662-50081681 None:intergenic 30.0%
TAAAAAGGAAGAAGGAATAG+CGG - Chr4:50083659-50083678 MsG0480020885.01.T01:intron 30.0%
TAACAAAATAAAAGTGGAGG+GGG + Chr4:50079861-50079880 None:intergenic 30.0%
TAAGGTGTAATATTCTAAGC+TGG + Chr4:50082834-50082853 None:intergenic 30.0%
TACCATATTTCTCAATTCTC+TGG - Chr4:50083172-50083191 MsG0480020885.01.T01:intron 30.0%
TATACTAACCTGTAGGTTAT+TGG - Chr4:50081023-50081042 MsG0480020885.01.T01:intron 30.0%
TATCAGCAAATACATGTCTA+AGG - Chr4:50080714-50080733 MsG0480020885.01.T01:intron 30.0%
TCGACAATCCCATTATTAAA+GGG - Chr4:50083478-50083497 MsG0480020885.01.T01:intron 30.0%
TGGATTTAATAACTTGAGAG+GGG - Chr4:50081195-50081214 MsG0480020885.01.T01:intron 30.0%
TTAAAGGGTTATATGACAAG+TGG - Chr4:50083493-50083512 MsG0480020885.01.T01:intron 30.0%
TTATCATTTCCTGGAAATCA+TGG - Chr4:50083136-50083155 MsG0480020885.01.T01:intron 30.0%
TTCAGATTGCTCTATTAGTT+TGG - Chr4:50082700-50082719 MsG0480020885.01.T01:CDS 30.0%
TTCGACAATCCCATTATTAA+AGG - Chr4:50083477-50083496 MsG0480020885.01.T01:intron 30.0%
TTTACAATGTTCATTGAAGC+AGG - Chr4:50083243-50083262 MsG0480020885.01.T01:intron 30.0%
TTTGAATGCAAAACATGACT+TGG - Chr4:50080610-50080629 MsG0480020885.01.T01:intron 30.0%
! AAAATCAGGGTTTTTACACT+GGG - Chr4:50082747-50082766 MsG0480020885.01.T01:CDS 30.0%
! AAAGAACGCTTTTGATGTAT+TGG - Chr4:50083736-50083755 MsG0480020885.01.T01:intron 30.0%
! ATAAGTTGAATTTCCATACC+TGG + Chr4:50080568-50080587 None:intergenic 30.0%
! ATAGTTCCAATTGTTTGTTG+AGG + Chr4:50081136-50081155 None:intergenic 30.0%
! GATTATAAACCTCTGAAAAG+AGG + Chr4:50083403-50083422 None:intergenic 30.0%
! GATTTCCCTGTTTTCATTTT+TGG + Chr4:50083113-50083132 None:intergenic 30.0%
! TCCAGCTTTTTATCATAACA+AGG + Chr4:50081386-50081405 None:intergenic 30.0%
! TGAAACAAATTTTGAACGCA+AGG - Chr4:50080335-50080354 MsG0480020885.01.T01:intron 30.0%
! TTAATAATGGGATTGTCGAA+TGG + Chr4:50083477-50083496 None:intergenic 30.0%
! TTGAAATTTGCTCTCTGTTA+TGG - Chr4:50083062-50083081 MsG0480020885.01.T01:CDS 30.0%
! TTTTATCAAGTCACACCTTA+AGG - Chr4:50082062-50082081 MsG0480020885.01.T01:CDS 30.0%
!! AATAATCATGGACTAGTACT+CGG + Chr4:50082589-50082608 None:intergenic 30.0%
!! ACACCAACTTACTTTTATGA+AGG + Chr4:50082128-50082147 None:intergenic 30.0%
!! GACAAGATTTTTCAAATCCT+TGG - Chr4:50080396-50080415 MsG0480020885.01.T01:intron 30.0%
!! TTACACCTTATTGGTTTGTT+TGG - Chr4:50082844-50082863 MsG0480020885.01.T01:intron 30.0%
!!! AGAGATTTTGGAATTGATTC+AGG - Chr4:50081511-50081530 MsG0480020885.01.T01:intron 30.0%
!!! AGGATTTTGATTCCAAAATC+AGG - Chr4:50082733-50082752 MsG0480020885.01.T01:CDS 30.0%
!!! GGATTTTGATTCCAAAATCA+GGG - Chr4:50082734-50082753 MsG0480020885.01.T01:CDS 30.0%
AAAGTAACTAGGAGAGTTCA+TGG + Chr4:50079501-50079520 None:intergenic 35.0%
AACAACTAAGTATGTTCGGT+GGG - Chr4:50079913-50079932 MsG0480020885.01.T01:three_prime_UTR 35.0%
AACTGAAGACCTACTAATCT+AGG + Chr4:50080006-50080025 None:intergenic 35.0%
AAGAGGAGAAATGCGAAAAT+GGG + Chr4:50080249-50080268 None:intergenic 35.0%
AAGAGTCCTCAACAAACAAT+TGG - Chr4:50081127-50081146 MsG0480020885.01.T01:intron 35.0%
AATCACAAGAACTTAAGCAC+AGG + Chr4:50081697-50081716 None:intergenic 35.0%
AATCTGCTAAAGATCTGAGT+CGG - Chr4:50083307-50083326 MsG0480020885.01.T01:intron 35.0%
ACAACACTGGAAAAGTAACT+AGG + Chr4:50079512-50079531 None:intergenic 35.0%
ACAGTATTGCTGAATAAGCA+AGG - Chr4:50080140-50080159 MsG0480020885.01.T01:three_prime_UTR 35.0%
ACTGAAGACCTACTAATCTA+GGG + Chr4:50080005-50080024 None:intergenic 35.0%
AGGGAATGGAATGGATAAAA+AGG - Chr4:50083644-50083663 MsG0480020885.01.T01:intron 35.0%
AGGTGAAGCTAACATGATTT+CGG - Chr4:50081463-50081482 MsG0480020885.01.T01:intron 35.0%
ATAAAAAGCTGGAAGCTTCT+AGG - Chr4:50081393-50081412 MsG0480020885.01.T01:CDS 35.0%
ATCAATTGGTAGATGATGAG+AGG - Chr4:50080506-50080525 MsG0480020885.01.T01:intron 35.0%
ATCTGTTAAAGTTTCGCTCA+AGG - Chr4:50079813-50079832 MsG0480020885.01.T01:intron 35.0%
ATTCCACACAAGATTCAACA+AGG + Chr4:50080465-50080484 None:intergenic 35.0%
ATTGAAGCAGGTTGCTTAAA+TGG - Chr4:50083255-50083274 MsG0480020885.01.T01:intron 35.0%
ATTGCTGAATAAGCAAGGTT+TGG - Chr4:50080145-50080164 MsG0480020885.01.T01:three_prime_UTR 35.0%
ATTTAATAACTTGAGAGGGG+GGG - Chr4:50081198-50081217 MsG0480020885.01.T01:intron 35.0%
ATTTCAAATGTCCTAGGATC+TGG + Chr4:50082341-50082360 None:intergenic 35.0%
CAGAATTAGATTAGGTCCTA+AGG - Chr4:50083962-50083981 MsG0480020885.01.T01:five_prime_UTR 35.0%
CATAGCCAAACAAACCAATA+AGG + Chr4:50082852-50082871 None:intergenic 35.0%
CATTGTGAATTGCATCTACT+CGG - Chr4:50083803-50083822 MsG0480020885.01.T01:intron 35.0%
CTAAAAAAGAGAGAAGGGAA+GGG + Chr4:50079301-50079320 None:intergenic 35.0%
CTCCAGAGAATTGAGAAATA+TGG + Chr4:50083177-50083196 None:intergenic 35.0%
CTCTTCACTGATGAAATGTA+AGG + Chr4:50081112-50081131 None:intergenic 35.0%
CTGATGAAATGTAAGGTAGA+AGG + Chr4:50081105-50081124 None:intergenic 35.0%
CTGGAGTTGCATTAATTCAT+TGG - Chr4:50083191-50083210 MsG0480020885.01.T01:intron 35.0%
CTGTTTGGAAGACATATTGA+CGG - Chr4:50081856-50081875 MsG0480020885.01.T01:CDS 35.0%
GAAAAAACCCGATAAAGTCA+AGG - Chr4:50079674-50079693 MsG0480020885.01.T01:three_prime_UTR 35.0%
GAAGTATAAAAAGAGCGGAA+AGG - Chr4:50083624-50083643 MsG0480020885.01.T01:CDS 35.0%
GAGGAAATATACTAACCTGT+AGG - Chr4:50081016-50081035 MsG0480020885.01.T01:intron 35.0%
GAGTTAGAAATATGGGATGA+AGG - Chr4:50080934-50080953 MsG0480020885.01.T01:intron 35.0%
GATTGTAAAAACTTGCCTCT+AGG + Chr4:50081930-50081949 None:intergenic 35.0%
GATTTAATAACTTGAGAGGG+GGG - Chr4:50081197-50081216 MsG0480020885.01.T01:intron 35.0%
GCTTACCTAAAAAAGAGAGA+AGG + Chr4:50079307-50079326 None:intergenic 35.0%
GGAATGGATAAAAAGGAAGA+AGG - Chr4:50083651-50083670 MsG0480020885.01.T01:intron 35.0%
GGATTTAATAACTTGAGAGG+GGG - Chr4:50081196-50081215 MsG0480020885.01.T01:intron 35.0%
GTATATTTCCTCATCTTCTC+AGG + Chr4:50081008-50081027 None:intergenic 35.0%
GTTGCTATCCACTTTAGTAA+GGG - Chr4:50082438-50082457 MsG0480020885.01.T01:intron 35.0%
TAAAAAGCTGGAAGCTTCTA+GGG - Chr4:50081394-50081413 MsG0480020885.01.T01:CDS 35.0%
TAGATACACCCTTACTAAAG+TGG + Chr4:50082449-50082468 None:intergenic 35.0%
TATGCTGCTAAAACACTGTT+TGG - Chr4:50081841-50081860 MsG0480020885.01.T01:CDS 35.0%
TCACTTCTGAGTTACATGAT+TGG - Chr4:50083586-50083605 MsG0480020885.01.T01:CDS 35.0%
TGAAATGTAAGGTAGAAGGA+CGG + Chr4:50081101-50081120 None:intergenic 35.0%
TGAGAAATATGGTACCTGAA+GGG + Chr4:50083166-50083185 None:intergenic 35.0%
TGATAAAAGACACCACCAAA+GGG + Chr4:50082050-50082069 None:intergenic 35.0%
TGTTTGGAAGACATATTGAC+GGG - Chr4:50081857-50081876 MsG0480020885.01.T01:CDS 35.0%
TTAGAAATATGGGATGAAGG+AGG - Chr4:50080937-50080956 MsG0480020885.01.T01:intron 35.0%
TTAGCAGATTGACCTGAAAT+TGG + Chr4:50083297-50083316 None:intergenic 35.0%
TTCCACACAAGATTCAACAA+GGG + Chr4:50080464-50080483 None:intergenic 35.0%
TTCTAAATCATTGTCTGTGC+AGG - Chr4:50083022-50083041 MsG0480020885.01.T01:CDS 35.0%
TTGAAGCAGGTTGCTTAAAT+GGG - Chr4:50083256-50083275 MsG0480020885.01.T01:intron 35.0%
TTGAGAAATATGGTACCTGA+AGG + Chr4:50083167-50083186 None:intergenic 35.0%
TTGATAAAAGACACCACCAA+AGG + Chr4:50082051-50082070 None:intergenic 35.0%
TTTGAGAGTTCGTCCTATTA+TGG - Chr4:50082797-50082816 MsG0480020885.01.T01:CDS 35.0%
! AAAACTTCGGCACATTTTAC+TGG - Chr4:50082518-50082537 MsG0480020885.01.T01:intron 35.0%
! AAACTTCGGCACATTTTACT+GGG - Chr4:50082519-50082538 MsG0480020885.01.T01:intron 35.0%
! AAATCAGGGTTTTTACACTG+GGG - Chr4:50082748-50082767 MsG0480020885.01.T01:CDS 35.0%
! AGTGTTTTACTCCCTATTTC+AGG - Chr4:50082970-50082989 MsG0480020885.01.T01:CDS 35.0%
! ATAGAAGACACCTTTTGTGA+AGG + Chr4:50082190-50082209 None:intergenic 35.0%
! ATCTATGCTTTTCACAGACA+TGG - Chr4:50080869-50080888 MsG0480020885.01.T01:intron 35.0%
! ATTGACAACTGGAGAGATTT+TGG - Chr4:50081499-50081518 MsG0480020885.01.T01:intron 35.0%
! CAAAATCAGGGTTTTTACAC+TGG - Chr4:50082746-50082765 MsG0480020885.01.T01:CDS 35.0%
! CAGTGTAAAAACCCTGATTT+TGG + Chr4:50082748-50082767 None:intergenic 35.0%
! GCCTTGTTATGATAAAAAGC+TGG - Chr4:50081382-50081401 MsG0480020885.01.T01:CDS 35.0%
! GTAGATTCTGTATTGACAAC+TGG - Chr4:50081488-50081507 MsG0480020885.01.T01:intron 35.0%
! GTGTTTTACTCCCTATTTCA+GGG - Chr4:50082971-50082990 MsG0480020885.01.T01:CDS 35.0%
!! ATAATCATGGACTAGTACTC+GGG + Chr4:50082588-50082607 None:intergenic 35.0%
!! ATTGGTTTGTTTGGCTATGT+TGG - Chr4:50082853-50082872 MsG0480020885.01.T01:intron 35.0%
!! TTGGTTTGTTTGGCTATGTT+GGG - Chr4:50082854-50082873 MsG0480020885.01.T01:intron 35.0%
!! TTGTTATTTGAAGGTCACAG+TGG - Chr4:50079768-50079787 MsG0480020885.01.T01:intron 35.0%
!! TTTTCAAGAAGTTACCCTAG+AGG - Chr4:50081912-50081931 MsG0480020885.01.T01:intron 35.0%
!!! ACAGTGTTTTAGCAGCATAT+CGG + Chr4:50081840-50081859 None:intergenic 35.0%
!!! GATTTTTTGTGTTAGGCAAG+TGG - Chr4:50083879-50083898 MsG0480020885.01.T01:intron 35.0%
!!! TTTTTTCGACTTTCCCTTGA+GGG + Chr4:50079661-50079680 None:intergenic 35.0%
AACTAGGAGAGTTCATGGTA+TGG + Chr4:50079496-50079515 None:intergenic 40.0%
AAGTTTAGAAGAGGCTCCTT+TGG - Chr4:50081643-50081662 MsG0480020885.01.T01:intron 40.0%
AATACTCGACTCCCTGAAAT+AGG + Chr4:50082985-50083004 None:intergenic 40.0%
AATATCTTCGGAGAACCAGA+GGG + Chr4:50079272-50079291 None:intergenic 40.0%
AATGAAGAAGGACACCTCTA+TGG - Chr4:50081775-50081794 MsG0480020885.01.T01:CDS 40.0%
ACATCTCCAATTCGAATAGC+TGG + Chr4:50079600-50079619 None:intergenic 40.0%
ATACTCGACTCCCTGAAATA+GGG + Chr4:50082984-50083003 None:intergenic 40.0%
ATGAAGAAGGACACCTCTAT+GGG - Chr4:50081776-50081795 MsG0480020885.01.T01:CDS 40.0%
ATGCATTTACCCTGAAGTTG+TGG - Chr4:50081234-50081253 MsG0480020885.01.T01:intron 40.0%
ATGTGTTTGAACGTGAGTGA+AGG - Chr4:50080749-50080768 MsG0480020885.01.T01:intron 40.0%
CAGCATGCCAAATCTAACAT+AGG + Chr4:50081292-50081311 None:intergenic 40.0%
CATCTTAACTCAGAACCCTT+AGG + Chr4:50083981-50084000 None:intergenic 40.0%
CCTAAAAAAGAGAGAAGGGA+AGG + Chr4:50079302-50079321 None:intergenic 40.0%
CGAACATACTTAGTTGTTCG+CGG + Chr4:50079911-50079930 None:intergenic 40.0%
CGAGTAGATGCAATTCACAA+TGG + Chr4:50083805-50083824 None:intergenic 40.0%
CGCGAACAACTAAGTATGTT+CGG - Chr4:50079909-50079928 MsG0480020885.01.T01:three_prime_UTR 40.0%
GAACAACTAAGTATGTTCGG+TGG - Chr4:50079912-50079931 MsG0480020885.01.T01:three_prime_UTR 40.0%
GAAGAGGAGAAATGCGAAAA+TGG + Chr4:50080250-50080269 None:intergenic 40.0%
GAAGGGACAGAGAATATCTT+CGG + Chr4:50079284-50079303 None:intergenic 40.0%
GAGTCGAGTATTACTCTTCT+TGG - Chr4:50082993-50083012 MsG0480020885.01.T01:CDS 40.0%
GATACTATGCATGCTTGTGA+AGG + Chr4:50079639-50079658 None:intergenic 40.0%
GCTTGAGTAATTGCTTCAAC+AGG - Chr4:50081330-50081349 MsG0480020885.01.T01:CDS 40.0%
GCTTTGTACTGCCATCAATT+AGG - Chr4:50079951-50079970 MsG0480020885.01.T01:intron 40.0%
GGTTGCTATCCACTTTAGTA+AGG - Chr4:50082437-50082456 MsG0480020885.01.T01:intron 40.0%
GTGACATGGTATACTTCTTC+TGG + Chr4:50081356-50081375 None:intergenic 40.0%
TAAAAAGAGCGGAAAGGGAA+TGG - Chr4:50083630-50083649 MsG0480020885.01.T01:CDS 40.0%
TCCTCTAGATACCAAGTACA+CGG - Chr4:50083702-50083721 MsG0480020885.01.T01:intron 40.0%
TCTGAGTTACATGATTGGTG+AGG - Chr4:50083591-50083610 MsG0480020885.01.T01:CDS 40.0%
TGAAGCAGGTTGCTTAAATG+GGG - Chr4:50083257-50083276 MsG0480020885.01.T01:intron 40.0%
TGAAGCTAACATGATTTCGG+AGG - Chr4:50081466-50081485 MsG0480020885.01.T01:intron 40.0%
TGCATTTACCCTGAAGTTGT+GGG - Chr4:50081235-50081254 MsG0480020885.01.T01:intron 40.0%
TGGCGTGAAAATCTATATGC+AGG - Chr4:50081043-50081062 MsG0480020885.01.T01:intron 40.0%
TGTGTGTGTGTGTGTAAACA+AGG + Chr4:50082901-50082920 None:intergenic 40.0%
TTACGACAAGCACAGATTGT+TGG + Chr4:50082619-50082638 None:intergenic 40.0%
TTACTCAAGCACATCACTCT+AGG + Chr4:50081320-50081339 None:intergenic 40.0%
TTAGAGAGGAGGGTTTAAGA+GGG + Chr4:50079190-50079209 None:intergenic 40.0%
TTCTCTCCAGCTATTCGAAT+TGG - Chr4:50079591-50079610 MsG0480020885.01.T01:three_prime_UTR 40.0%
TTTCAAATCCTTGGGTGTGA+GGG - Chr4:50080405-50080424 MsG0480020885.01.T01:intron 40.0%
! AACTTCGGCACATTTTACTG+GGG - Chr4:50082520-50082539 MsG0480020885.01.T01:intron 40.0%
! ACAACTAAGTATGTTCGGTG+GGG - Chr4:50079914-50079933 MsG0480020885.01.T01:three_prime_UTR 40.0%
! GAAGGCAAAGCAAGAGATTT+TGG - Chr4:50083830-50083849 MsG0480020885.01.T01:intron 40.0%
! GAGAAAAGTGTAACCTGAAG+AGG + Chr4:50080266-50080285 None:intergenic 40.0%
! GATTGGTTCCCTAGATTAGT+AGG - Chr4:50079994-50080013 MsG0480020885.01.T01:intron 40.0%
! GTTGGTGAGAGGAATAATCA+TGG + Chr4:50082601-50082620 None:intergenic 40.0%
! TCTCAGACATCTCTGAAAAG+TGG + Chr4:50079569-50079588 None:intergenic 40.0%
! TTTTCAAATCCTTGGGTGTG+AGG - Chr4:50080404-50080423 MsG0480020885.01.T01:intron 40.0%
! TTTTCACGCCAATAACCTAC+AGG + Chr4:50081034-50081053 None:intergenic 40.0%
! TTTTCGCATTTCTCCTCTTC+AGG - Chr4:50080250-50080269 MsG0480020885.01.T01:intron 40.0%
! TTTTGTTACAAGCCACCCTT+TGG - Chr4:50082032-50082051 MsG0480020885.01.T01:intron 40.0%
!! CAAAAGCGTTCTTTCCGTTT+CGG + Chr4:50083730-50083749 None:intergenic 40.0%
!! TAGAGTCCCATTTTGACGAA+GGG - Chr4:50081435-50081454 MsG0480020885.01.T01:CDS 40.0%
!! TCTTTGGGATTCACAAAGCA+TGG + Chr4:50079741-50079760 None:intergenic 40.0%
!!! CCTTCCCTTCTCTCTTTTTT+AGG - Chr4:50079299-50079318 MsG0480020885.01.T01:three_prime_UTR 40.0%
!!! GTTTTTTCGACTTTCCCTTG+AGG + Chr4:50079662-50079681 None:intergenic 40.0%
AACGATGTGCTCATGAACTG+AGG - Chr4:50081730-50081749 MsG0480020885.01.T01:CDS 45.0%
ACGTTACACCCACAACTTCA+GGG + Chr4:50081246-50081265 None:intergenic 45.0%
ACTAACAGGGGCCTAATTGA+TGG + Chr4:50079965-50079984 None:intergenic 45.0%
AGCATGCATAGTATCCCTCA+AGG - Chr4:50079644-50079663 MsG0480020885.01.T01:three_prime_UTR 45.0%
AGTTTCGCTCAAGGATTGCT+TGG - Chr4:50079822-50079841 MsG0480020885.01.T01:intron 45.0%
ATCAATTAGGCCCCTGTTAG+TGG - Chr4:50079964-50079983 MsG0480020885.01.T01:intron 45.0%
CAAACCTGAGCTCCATATCT+TGG + Chr4:50081177-50081196 None:intergenic 45.0%
CAAGATATGGAGCTCAGGTT+TGG - Chr4:50081175-50081194 MsG0480020885.01.T01:intron 45.0%
CCTCTAGATACCAAGTACAC+GGG - Chr4:50083703-50083722 MsG0480020885.01.T01:intron 45.0%
CGTCAAAATGGGACTCTAGT+TGG + Chr4:50081433-50081452 None:intergenic 45.0%
CTTGTGTGGAATTCATCGCA+AGG - Chr4:50080473-50080492 MsG0480020885.01.T01:intron 45.0%
GAAGCAGGTTGCTTAAATGG+GGG - Chr4:50083258-50083277 MsG0480020885.01.T01:intron 45.0%
GAATATCTTCGGAGAACCAG+AGG + Chr4:50079273-50079292 None:intergenic 45.0%
GACCCTTGTTGAATCTTGTG+TGG - Chr4:50080459-50080478 MsG0480020885.01.T01:intron 45.0%
GCATGCATAGTATCCCTCAA+GGG - Chr4:50079645-50079664 MsG0480020885.01.T01:three_prime_UTR 45.0%
GCGCTATCTATGCCAAGATA+TGG - Chr4:50081162-50081181 MsG0480020885.01.T01:intron 45.0%
GTTAGAGAGGAGGGTTTAAG+AGG + Chr4:50079191-50079210 None:intergenic 45.0%
TAAAAGACACCACCAAAGGG+TGG + Chr4:50082047-50082066 None:intergenic 45.0%
TACGTTACACCCACAACTTC+AGG + Chr4:50081247-50081266 None:intergenic 45.0%
TATCAGATCGACCAGATCCT+AGG - Chr4:50082327-50082346 MsG0480020885.01.T01:intron 45.0%
TATGCCAAGATATGGAGCTC+AGG - Chr4:50081170-50081189 MsG0480020885.01.T01:intron 45.0%
TGAAGAAGGACACCTCTATG+GGG - Chr4:50081777-50081796 MsG0480020885.01.T01:CDS 45.0%
TGATGAGTCCTGAGAAGATG+AGG - Chr4:50080997-50081016 MsG0480020885.01.T01:intron 45.0%
TGCTATGCTGAGAAGAGTCA+TGG - Chr4:50081073-50081092 MsG0480020885.01.T01:intron 45.0%
TGGCAGTACAAAGCTCTGTA+TGG + Chr4:50079945-50079964 None:intergenic 45.0%
TTCACGCCCTTCGTCAAAAT+GGG + Chr4:50081444-50081463 None:intergenic 45.0%
! AACAAGGCATCACAGTGACA+TGG + Chr4:50081370-50081389 None:intergenic 45.0%
! AAGAAGGAATAGCGGAGAAG+AGG - Chr4:50083667-50083686 MsG0480020885.01.T01:intron 45.0%
! AAGCACAGATTGTTGGTGAG+AGG + Chr4:50082612-50082631 None:intergenic 45.0%
! ACTCCTAGCTTTCTCAGAAC+CGG + Chr4:50083529-50083548 None:intergenic 45.0%
! GTCTGTTTCTCCACAGTCAA+GGG - Chr4:50080211-50080230 MsG0480020885.01.T01:three_prime_UTR 45.0%
! TCATTGTCTGTGCAGGTTGA+TGG - Chr4:50083029-50083048 MsG0480020885.01.T01:CDS 45.0%
! TGTCTGTTTCTCCACAGTCA+AGG - Chr4:50080210-50080229 MsG0480020885.01.T01:three_prime_UTR 45.0%
! TTGCATCTACTCGGTTCTGA+AGG - Chr4:50083812-50083831 MsG0480020885.01.T01:intron 45.0%
!! CTAGAGTCCCATTTTGACGA+AGG - Chr4:50081434-50081453 MsG0480020885.01.T01:CDS 45.0%
AAAAACAGCCCTCACACCCA+AGG + Chr4:50080416-50080435 None:intergenic 50.0%
AATCCGACCGTCCACTAACA+GGG + Chr4:50079978-50079997 None:intergenic 50.0%
AGAGAGAGAGAGAGAGAGAG+AGG + Chr4:50079348-50079367 None:intergenic 50.0%
AGAGCGGAAAGGGAATGGAA+TGG - Chr4:50083635-50083654 MsG0480020885.01.T01:exon 50.0%
ATGCTGATGCAACCATTGGC+AGG + Chr4:50080543-50080562 None:intergenic 50.0%
ATGGTTGCATCAGCATGTCC+AGG - Chr4:50080547-50080566 MsG0480020885.01.T01:intron 50.0%
ATTAGGCCCCTGTTAGTGGA+CGG - Chr4:50079968-50079987 MsG0480020885.01.T01:intron 50.0%
CCCGTGTACTTGGTATCTAG+AGG + Chr4:50083706-50083725 None:intergenic 50.0%
CGTAACCTCCAGAACTTCCA+CGG + Chr4:50081804-50081823 None:intergenic 50.0%
CTTCACGCCCTTCGTCAAAA+TGG + Chr4:50081445-50081464 None:intergenic 50.0%
GAGTAAGTCAAGCCTGCCAA+TGG - Chr4:50080528-50080547 MsG0480020885.01.T01:intron 50.0%
GCAATAGAAGCCCTTGACTG+TGG + Chr4:50080224-50080243 None:intergenic 50.0%
GGACATGCTGATGCAACCAT+TGG + Chr4:50080547-50080566 None:intergenic 50.0%
TAACTTGAGAGGGGGGGAAA+CGG - Chr4:50081204-50081223 MsG0480020885.01.T01:intron 50.0%
TCAAGGATTGCTTGGCATGC+AGG - Chr4:50079830-50079849 MsG0480020885.01.T01:intron 50.0%
TGCATCAGCATGTCCAGGTA+TGG - Chr4:50080552-50080571 MsG0480020885.01.T01:intron 50.0%
TGTTACAAGCCACCCTTTGG+TGG - Chr4:50082035-50082054 MsG0480020885.01.T01:intron 50.0%
! CTCCTAGCTTTCTCAGAACC+GGG + Chr4:50083528-50083547 None:intergenic 50.0%
!! AGAAGCGTCGATCGTTAGAG+AGG + Chr4:50079204-50079223 None:intergenic 50.0%
!! CATTTTGACGAAGGGCGTGA+AGG - Chr4:50081443-50081462 MsG0480020885.01.T01:CDS 50.0%
AACTTCCACGGACCCCATAG+AGG + Chr4:50081792-50081811 None:intergenic 55.0%
ATCCGACCGTCCACTAACAG+GGG + Chr4:50079977-50079996 None:intergenic 55.0%
CAATCCGACCGTCCACTAAC+AGG + Chr4:50079979-50079998 None:intergenic 55.0%
CCAAGTACACGGGTCCGAAA+CGG - Chr4:50083713-50083732 MsG0480020885.01.T01:intron 55.0%
GAGAGAGAGAGAGAGAGAGG+TGG + Chr4:50079347-50079366 None:intergenic 55.0%
GCAGGTTGCTTAAATGGGGG+AGG - Chr4:50083261-50083280 MsG0480020885.01.T01:intron 55.0%
TATGGGGTCCGTGGAAGTTC+TGG - Chr4:50081793-50081812 MsG0480020885.01.T01:CDS 55.0%
TCTTCGGAGAACCAGAGGGA+AGG + Chr4:50079268-50079287 None:intergenic 55.0%
! CTGTTAGTGGACGGTCGGAT+TGG - Chr4:50079977-50079996 MsG0480020885.01.T01:intron 55.0%
! GCGTCGATCGTTAGAGAGGA+GGG + Chr4:50079200-50079219 None:intergenic 55.0%
!! AGCCCGGTTCTGAGAAAGCT+AGG - Chr4:50083523-50083542 MsG0480020885.01.T01:intron 55.0%
!! AGCGTCGATCGTTAGAGAGG+AGG + Chr4:50079201-50079220 None:intergenic 55.0%
CCGTTTCGGACCCGTGTACT+TGG + Chr4:50083716-50083735 None:intergenic 60.0%
CGGAGAACCAGAGGGAAGGT+CGG + Chr4:50079264-50079283 None:intergenic 60.0%
ACCAACGCCGACCTTCCCTC+TGG - Chr4:50079254-50079273 MsG0480020885.01.T01:three_prime_UTR 65.0%
ACCAGAGGGAAGGTCGGCGT+TGG + Chr4:50079258-50079277 None:intergenic 65.0%
CACGGTGCTCGGAGACGGAT+AGG + Chr4:50079229-50079248 None:intergenic 65.0%
GACAAGTGGCTCGAGCAGCC+CGG - Chr4:50083507-50083526 MsG0480020885.01.T01:intron 65.0%
GGACACCTCTATGGGGTCCG+TGG - Chr4:50081784-50081803 MsG0480020885.01.T01:CDS 65.0%
! GGCCCCTGTTAGTGGACGGT+CGG - Chr4:50079972-50079991 MsG0480020885.01.T01:intron 65.0%
! GGGGTCCGTGGAAGTTCTGG+AGG - Chr4:50081796-50081815 MsG0480020885.01.T01:CDS 65.0%
!! GTTGGTGCTGGCACGGTGCT+CGG + Chr4:50079240-50079259 None:intergenic 65.0%
GCTGGCACGGTGCTCGGAGA+CGG + Chr4:50079234-50079253 None:intergenic 70.0%
!! GGGAAGGTCGGCGTTGGTGC+TGG + Chr4:50079252-50079271 None:intergenic 70.0%
!! GGTCGGCGTTGGTGCTGGCA+CGG + Chr4:50079247-50079266 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
Chr4 gene 50079160 50084071 50079160 ID=MsG0480020885.01;Name=MsG0480020885.01
Chr4 mRNA 50079160 50084071 50079160 ID=MsG0480020885.01.T01;Parent=MsG0480020885.01;Name=MsG0480020885.01.T01;_AED=0.42;_eAED=0.44;_QI=163|0.83|0.76|1|0.66|0.76|13|883|359
Chr4 exon 50079160 50079772 50079160 ID=MsG0480020885.01.T01:exon:869;Parent=MsG0480020885.01.T01
Chr4 exon 50079875 50079966 50079875 ID=MsG0480020885.01.T01:exon:868;Parent=MsG0480020885.01.T01
Chr4 exon 50080061 50080239 50080061 ID=MsG0480020885.01.T01:exon:867;Parent=MsG0480020885.01.T01
Chr4 exon 50080778 50080793 50080778 ID=MsG0480020885.01.T01:exon:866;Parent=MsG0480020885.01.T01
Chr4 exon 50081294 50081469 50081294 ID=MsG0480020885.01.T01:exon:865;Parent=MsG0480020885.01.T01
Chr4 exon 50081559 50081608 50081559 ID=MsG0480020885.01.T01:exon:864;Parent=MsG0480020885.01.T01
Chr4 exon 50081699 50081879 50081699 ID=MsG0480020885.01.T01:exon:863;Parent=MsG0480020885.01.T01
Chr4 exon 50082040 50082166 50082040 ID=MsG0480020885.01.T01:exon:862;Parent=MsG0480020885.01.T01
Chr4 exon 50082663 50082849 50082663 ID=MsG0480020885.01.T01:exon:861;Parent=MsG0480020885.01.T01
Chr4 exon 50082960 50083113 50082960 ID=MsG0480020885.01.T01:exon:860;Parent=MsG0480020885.01.T01
Chr4 exon 50083380 50083450 50083380 ID=MsG0480020885.01.T01:exon:859;Parent=MsG0480020885.01.T01
Chr4 exon 50083536 50083654 50083536 ID=MsG0480020885.01.T01:exon:858;Parent=MsG0480020885.01.T01
Chr4 exon 50083911 50084071 50083911 ID=MsG0480020885.01.T01:exon:857;Parent=MsG0480020885.01.T01
Chr4 five_prime_UTR 50083911 50084071 50083911 ID=MsG0480020885.01.T01:five_prime_utr;Parent=MsG0480020885.01.T01
Chr4 five_prime_UTR 50083653 50083654 50083653 ID=MsG0480020885.01.T01:five_prime_utr;Parent=MsG0480020885.01.T01
Chr4 CDS 50083536 50083652 50083536 ID=MsG0480020885.01.T01:cds;Parent=MsG0480020885.01.T01
Chr4 CDS 50083380 50083450 50083380 ID=MsG0480020885.01.T01:cds;Parent=MsG0480020885.01.T01
Chr4 CDS 50082960 50083113 50082960 ID=MsG0480020885.01.T01:cds;Parent=MsG0480020885.01.T01
Chr4 CDS 50082663 50082849 50082663 ID=MsG0480020885.01.T01:cds;Parent=MsG0480020885.01.T01
Chr4 CDS 50082040 50082166 50082040 ID=MsG0480020885.01.T01:cds;Parent=MsG0480020885.01.T01
Chr4 CDS 50081699 50081879 50081699 ID=MsG0480020885.01.T01:cds;Parent=MsG0480020885.01.T01
Chr4 CDS 50081559 50081608 50081559 ID=MsG0480020885.01.T01:cds;Parent=MsG0480020885.01.T01
Chr4 CDS 50081294 50081469 50081294 ID=MsG0480020885.01.T01:cds;Parent=MsG0480020885.01.T01
Chr4 CDS 50080778 50080793 50080778 ID=MsG0480020885.01.T01:cds;Parent=MsG0480020885.01.T01
Chr4 CDS 50080239 50080239 50080239 ID=MsG0480020885.01.T01:cds;Parent=MsG0480020885.01.T01
Chr4 three_prime_UTR 50080061 50080238 50080061 ID=MsG0480020885.01.T01:three_prime_utr;Parent=MsG0480020885.01.T01
Chr4 three_prime_UTR 50079875 50079966 50079875 ID=MsG0480020885.01.T01:three_prime_utr;Parent=MsG0480020885.01.T01
Chr4 three_prime_UTR 50079160 50079772 50079160 ID=MsG0480020885.01.T01:three_prime_utr;Parent=MsG0480020885.01.T01
Gene Sequence

>MsG0480020885.01.T01

ATGTCTGAGAAATTCTCTCCAGCTATTCGAATTGGAGATGTCAACGATTTCATTGCGCCTTCACAAGCATGCATAGTATCCCTCAAGGGAAAGTCGAAAAAACCCGATAAAGTCAAGGTCACAGTGGCTGACAGACAAGTGAAGTCAGAATCTGTTAAAGTTTCGCTCAAGGATTGCTTGGCATGCAGTGGATGTGTGACATCAGCAGAGACAGTATTGCTGAATAAGCAAGGTTTGGATGAGTTTCTGTCCAATATTAATGAAGGAAAGATAGTGATTGTGTCTGTTTCTCCACAGTCAAGGGCTTCTATTGCAGCCCATTTTCGCATTTCTCCTCTTCAGGTTTTCAAAAAGCTGACAAGATTTTTCAAATCCTTGGGTGTGAGGGCTGTTTTTGATACAAGTTGCAGTAGAGACTTGACCCTTGTTGAATCTTGTGTGGAATTCATCGCAAGGTATAGACAAAATCAATTGGTAGATGATGAGAGGAGTAAGTCAAGCCTGCCAATGGTTGCATCAGCATGTCCAGGTTTGATCTGCTATGCTGAGAAGAGTCATGGATCCGTCCTTCTACCTTACATTTCATCAGTGAAGAGTCCTCAACAAACAATTGGAACTATCATAAAGCGCTATCTATGCCAAGATATGGAGCTCAGGCCAGAAGAAGTATACCATGTCACTGTGATGCCTTGTTATGATAAAAAGCTGGAAGCTTCTAGGGACGACTTTGTTTTCCAACTAGAGTCCCATTTTGACGAAGGGCGTGAAGGTGAAGCTAACATGATTTCGGAGGTAGATTCTGTATTGACAACTGGAGAGATTTTGGAATTGATTCAGTCAAAAGAAGTTGATTTTAAAAGTTTAGAAGAGGCTCCTTTGGATAAACTACTATCTAATATTAATGAAGAAGGACACCTCTATGGGGTCCGTGGAAGTTCTGGAGGTTACGCAGAAACAATATTCCGATATGCTGCTAAAACACTGTTTGGAAGACATATTGACGGGCCTTTGAACTTTAGAAACATTAAAAATTCAGATTTTCAAGAAGTTACCCTAGAGGCAAGTTGCTATCCACTTTAG
Protein sequence

>MsG0480020885.01.T01

MSEKFSPAIRIGDVNDFIAPSQACIVSLKGKSKKPDKVKVTVADRQVKSESVKVSLKDCLACSGCVTSAETVLLNKQGLDEFLSNINEGKIVIVSVSPQSRASIAAHFRISPLQVFKKLTRFFKSLGVRAVFDTSCSRDLTLVESCVEFIARYRQNQLVDDERSKSSLPMVASACPGLICYAEKSHGSVLLPYISSVKSPQQTIGTIIKRYLCQDMELRPEEVYHVTVMPCYDKKLEASRDDFVFQLESHFDEGREGEANMISEVDSVLTTGEILELIQSKEVDFKSLEEAPLDKLLSNINEEGHLYGVRGSSGGYAETIFRYAAKTLFGRHIDGPLNFRNIKNSDFQEVTLEASCYPL*