AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180001795.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180001795.01.T01 MTR_1g043190 95.333 600 28 0 16 615 1 600 0.0 1173
MsG0180001795.01.T01 MTR_1g076190 76.364 605 136 6 14 615 1 601 0.0 944
MsG0180001795.01.T01 MTR_1g076190 76.364 605 136 6 14 615 1 601 0.0 943
MsG0180001795.01.T01 MTR_5g063920 52.960 625 263 6 2 614 3 608 0.0 667
MsG0180001795.01.T01 MTR_5g063920 52.960 625 263 6 2 614 3 608 0.0 667
MsG0180001795.01.T01 MTR_5g063920 52.027 444 192 5 183 614 10 444 1.17e-156 460
MsG0180001795.01.T01 MTR_4g011370 28.767 511 322 15 19 506 15 506 6.45e-49 179
MsG0180001795.01.T01 MTR_4g011370 28.512 484 307 14 19 479 15 482 9.39e-46 169
MsG0180001795.01.T01 MTR_4g011370 27.451 510 306 16 19 506 15 482 1.85e-41 157
MsG0180001795.01.T01 MTR_3g108700 27.236 492 284 17 13 459 92 554 2.98e-29 123
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180001795.01.T01 AT1G04400 66.792 533 168 3 18 547 6 532 0.0 740
MsG0180001795.01.T01 AT1G04400 66.792 533 168 3 18 547 6 532 0.0 740
MsG0180001795.01.T01 AT4G08920 52.667 600 272 5 20 615 15 606 0.0 637
MsG0180001795.01.T01 AT3G15620 29.087 526 329 17 19 518 26 533 6.57e-53 190
MsG0180001795.01.T01 AT3G15620 28.333 420 261 15 19 412 26 431 3.29e-33 132
MsG0180001795.01.T01 AT5G24850 28.632 468 290 18 13 457 80 526 3.81e-32 131

Find 188 sgRNAs with CRISPR-Local

Find 284 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TACCGATCCTTCAAAATTTA+AGG 0.101787 1:+27138935 MsG0180001795.01.T01:CDS
CTATCTCCATATATTCATTT+TGG 0.145561 1:+27138708 MsG0180001795.01.T01:CDS
TTCGATTCTCCCTGCTAATT+TGG 0.168258 1:-27137041 None:intergenic
TTAGGAGGATCATCAATATT+TGG 0.207654 1:-27140099 None:intergenic
AACACTCTCTTTCTAGTTCT+TGG 0.207734 1:-27140805 None:intergenic
GTTGTGTTTAATCATCTTTA+TGG 0.220247 1:+27137487 MsG0180001795.01.T01:CDS
TCTGGCACACACTCTCTTAT+TGG 0.228589 1:+27140558 MsG0180001795.01.T01:three_prime_UTR
TGTCGAACGTATTCGCCTTC+TGG 0.247715 1:-27139745 None:intergenic
TCTATTTCAATGATTGGTTT+TGG 0.266675 1:-27139874 None:intergenic
TTGTCCTTCAAGAAAACTTT+TGG 0.273008 1:-27140018 None:intergenic
ATAAAACTGTCCTTCCTCTT+TGG 0.287100 1:-27137314 None:intergenic
ATAGCACTTCTCTTGATATA+TGG 0.296869 1:-27140509 None:intergenic
TTTGTTTGTTTGTTATAAAA+TGG 0.297423 1:+27136599 MsG0180001795.01.T01:five_prime_UTR
GTTGGAATTCTTGCCAATTC+AGG 0.300795 1:-27139775 None:intergenic
CACGAACGAAACAGATATTA+TGG 0.303685 1:+27138763 MsG0180001795.01.T01:CDS
GCCAAATCTATTTCAATGAT+TGG 0.308119 1:-27139880 None:intergenic
TCTAACACTCACTCTCCTAT+TGG 0.308201 1:-27140652 None:intergenic
TAGTACTCTTAAAGCACTTC+TGG 0.312120 1:+27137435 MsG0180001795.01.T01:CDS
AATTCTCCAAAATGAATATA+TGG 0.312812 1:-27138714 None:intergenic
ACCAATCATTGAAATAGATT+TGG 0.318125 1:+27139879 MsG0180001795.01.T01:CDS
TGCAAGCATCTATTCCAAAA+AGG 0.318620 1:-27138283 None:intergenic
GTCCCACATCGGACGAAATA+TGG 0.320629 1:+27140697 MsG0180001795.01.T01:three_prime_UTR
TAAAACTGTCCTTCCTCTTT+GGG 0.325587 1:-27137313 None:intergenic
ATAGGACCATAGTTTGGTTT+AGG 0.327813 1:+27137209 MsG0180001795.01.T01:CDS
CTCATTCCTGCATCAACTAA+TGG 0.329714 1:-27138984 None:intergenic
GTTCTAGCTTTAGTTGTTTG+TGG 0.334866 1:+27136512 MsG0180001795.01.T01:five_prime_UTR
TCGATTCTCCCTGCTAATTT+GGG 0.335623 1:-27137040 None:intergenic
TGTTGCTTATACCATGGAAA+TGG 0.353600 1:+27139075 MsG0180001795.01.T01:CDS
ATATTGATGATCCTCCTAAT+AGG 0.357360 1:+27140103 MsG0180001795.01.T01:CDS
TCGACAATGGCTACCTGAAT+TGG 0.359838 1:+27139762 MsG0180001795.01.T01:CDS
TGGAGATTGTACTTATAGTT+TGG 0.363535 1:+27137134 MsG0180001795.01.T01:five_prime_UTR
ATCCTTCAAAATTTAAGGCT+TGG 0.374496 1:+27138940 MsG0180001795.01.T01:CDS
AGCTTACTAATAGAATAATA+AGG 0.381124 1:+27140395 MsG0180001795.01.T01:three_prime_UTR
CTGGCACACACTCTCTTATT+GGG 0.385502 1:+27140559 MsG0180001795.01.T01:three_prime_UTR
TGATCACGAACAAGTGAAAC+TGG 0.386711 1:-27138142 None:intergenic
ATCTGAAAATGGGTATGAAT+AGG 0.387739 1:+27137191 MsG0180001795.01.T01:CDS
CAAAATGAATATATGGAGAT+AGG 0.396109 1:-27138707 None:intergenic
ATGAGAGAGCTTTGGGCGAC+TGG 0.398776 1:+27139002 MsG0180001795.01.T01:CDS
TGGTGTATGAGTGAAGGTTT+TGG 0.400106 1:+27137154 MsG0180001795.01.T01:exon
ATATTTGGATTCTGAAGTAT+TGG 0.400254 1:-27140084 None:intergenic
GTTGCTTATACCATGGAAAT+GGG 0.400629 1:+27139076 MsG0180001795.01.T01:CDS
TGCAGGAATGAGAGAGCTTT+GGG 0.404630 1:+27138995 MsG0180001795.01.T01:CDS
ATGCAGGAATGAGAGAGCTT+TGG 0.404880 1:+27138994 MsG0180001795.01.T01:CDS
CTAACACTCACTCTCCTATT+GGG 0.406937 1:-27140651 None:intergenic
TGACCTTGAAAGTGATATCT+TGG 0.407742 1:+27139133 MsG0180001795.01.T01:CDS
CGCTCAAGCTCGTGACCATC+AGG 0.409441 1:-27139182 None:intergenic
ACACATATCTCAACCGAAAC+AGG 0.418816 1:-27136921 None:intergenic
TAGTTAAAAGTAGAAATTTG+AGG 0.421078 1:+27136982 MsG0180001795.01.T01:five_prime_UTR
GTGGTACCACACATTGGAAA+TGG 0.421414 1:+27140592 MsG0180001795.01.T01:three_prime_UTR
GTGGGTCTCACCTCTTTATG+TGG 0.423186 1:-27140618 None:intergenic
CTTCAAAATTTAAGGCTTGG+AGG 0.423968 1:+27138943 MsG0180001795.01.T01:CDS
GTGCTCCTCCTCAAGGTCTC+AGG 0.427055 1:-27137064 None:intergenic
GATCAATCACTGAAATCTCT+TGG 0.430182 1:+27137385 MsG0180001795.01.T01:CDS
ACTAAATGCGACACCTGTTT+CGG 0.438346 1:+27136908 MsG0180001795.01.T01:five_prime_UTR
CTTGGAAAGGAAATGATAGT+TGG 0.454027 1:-27140787 None:intergenic
GTATGAATAGGACCATAGTT+TGG 0.457722 1:+27137203 MsG0180001795.01.T01:CDS
TTGGGTTGGCAGTATATCTC+CGG 0.458839 1:+27139152 MsG0180001795.01.T01:CDS
ATAAGGTTACTCATATTATC+CGG 0.458942 1:-27140162 None:intergenic
ATTAATTGACAAGGAGGAAT+GGG 0.459868 1:-27138328 None:intergenic
TTCTTCGTCAAATGATCAAA+AGG 0.460283 1:+27140059 MsG0180001795.01.T01:CDS
TATTGTTGAGTGAGACATGT+AGG 0.460591 1:+27136648 MsG0180001795.01.T01:five_prime_UTR
ATCCCTCCTAAACCAAACTA+TGG 0.463647 1:-27137215 None:intergenic
AATGGCGTCTCGACGGTGAA+TGG 0.469398 1:-27138882 None:intergenic
AAATTTAAGGCTTGGAGGCT+AGG 0.472320 1:+27138948 MsG0180001795.01.T01:CDS
CCACATGGGTTTCACCCAAT+AGG 0.475301 1:+27140637 MsG0180001795.01.T01:three_prime_UTR
TGTCTGACAGTGCCTCGAAC+AGG 0.481273 1:-27136886 None:intergenic
TTGCCACATGTTCCCTCCGC+AGG 0.481970 1:+27136856 MsG0180001795.01.T01:five_prime_UTR
CGGTGTCAGTACGCTTGATA+AGG 0.484691 1:-27140179 None:intergenic
TTAAGGCTTGGAGGCTAGGT+AGG 0.487048 1:+27138952 MsG0180001795.01.T01:CDS
ACAACCCACTTGGGTTAGCC+TGG 0.489530 1:-27137112 None:intergenic
GGACCATAGTTTGGTTTAGG+AGG 0.490954 1:+27137212 MsG0180001795.01.T01:CDS
TTAGCAAGAGCGTGGTCTCC+AGG 0.492067 1:+27138585 MsG0180001795.01.T01:CDS
CATACTGTGTTAAGAGCATC+AGG 0.492404 1:+27139829 MsG0180001795.01.T01:CDS
AGTGCTTGAACTCTGTCTCT+TGG 0.492546 1:-27140250 None:intergenic
TGAGGAGAGGAACAATGTTA+TGG 0.494579 1:-27140288 None:intergenic
CTGCATTAGCTGCTGCTGCA+AGG 0.495862 1:+27137257 MsG0180001795.01.T01:CDS
AAAACAAAGAGGCATAATCT+TGG 0.496053 1:+27136713 MsG0180001795.01.T01:five_prime_UTR
AACCCAAGATATCACTTTCA+AGG 0.496125 1:-27139136 None:intergenic
TACAATCTCCACAACCCACT+TGG 0.497283 1:-27137122 None:intergenic
ATTAGCCGACCCAAATTAGC+AGG 0.497357 1:+27137031 MsG0180001795.01.T01:five_prime_UTR
TGCATTAGCTGCTGCTGCAA+GGG 0.499127 1:+27137258 MsG0180001795.01.T01:CDS
AGGCTAACCCAAGTGGGTTG+TGG 0.500125 1:+27137114 MsG0180001795.01.T01:five_prime_UTR
TTAGCTGCTGCTGCAAGGGA+TGG 0.503348 1:+27137262 MsG0180001795.01.T01:CDS
TATTTCATTCCCCATTTCCA+TGG 0.503649 1:-27139086 None:intergenic
CGGGTAGAGTGTCGAGGTGG+TGG 0.504560 1:+27137338 MsG0180001795.01.T01:CDS
CGATAAAGTGGATCGAGAAC+CGG 0.506956 1:+27140143 MsG0180001795.01.T01:CDS
TGTAGGAGATATCTGATCAC+TGG 0.512203 1:-27136815 None:intergenic
GACCTTGAAAGTGATATCTT+GGG 0.514261 1:+27139134 MsG0180001795.01.T01:CDS
GAAGCAGTCTCTTTATCACT+TGG 0.515620 1:+27137363 MsG0180001795.01.T01:CDS
ATTGTTGAGTGAGACATGTA+GGG 0.516711 1:+27136649 MsG0180001795.01.T01:five_prime_UTR
TTGAGGAGGAGCACACTCTC+AGG 0.517337 1:+27137073 MsG0180001795.01.T01:five_prime_UTR
TAGGAGGGATCTAAGAATTG+AGG 0.517598 1:+27137228 MsG0180001795.01.T01:CDS
TCACTGAAATCTCTTGGAGC+TGG 0.517789 1:+27137391 MsG0180001795.01.T01:CDS
GACCATAGTTTGGTTTAGGA+GGG 0.518059 1:+27137213 MsG0180001795.01.T01:CDS
GCTTGGAGGCTAGGTAGGAC+TGG 0.519332 1:+27138957 MsG0180001795.01.T01:CDS
TTCTCCCTGCTAATTTGGGT+CGG 0.520389 1:-27137036 None:intergenic
CACCACCTCGACACTCTACC+CGG 0.521428 1:-27137337 None:intergenic
AATTAATTGACAAGGAGGAA+TGG 0.522850 1:-27138329 None:intergenic
CTTGCAGCAGCAGCTAATGC+AGG 0.525751 1:-27137256 None:intergenic
TGAGTGAGACATGTAGGGAA+AGG 0.525981 1:+27136654 MsG0180001795.01.T01:five_prime_UTR
TGAGAGTGTGCTCCTCCTCA+AGG 0.526175 1:-27137071 None:intergenic
GGATATCCATTAGTTGATGC+AGG 0.527111 1:+27138978 MsG0180001795.01.T01:CDS
AAGAGCATCAGGTGTAGAGT+TGG 0.528536 1:+27139840 MsG0180001795.01.T01:CDS
GAGAGCTTTGGGCGACTGGA+TGG 0.531768 1:+27139006 MsG0180001795.01.T01:CDS
TGGAATATATATAATGAAAG+TGG 0.532119 1:+27138238 MsG0180001795.01.T01:CDS
ACCGTCGAGACGCCATTGCT+AGG 0.532442 1:+27138888 MsG0180001795.01.T01:CDS
ACTCTTTCTAACAGTCTCTC+TGG 0.533141 1:+27140540 MsG0180001795.01.T01:three_prime_UTR
TTTGAAGGATCGGTATTCCA+AGG 0.533741 1:-27138927 None:intergenic
AGAGCATCAGGTGTAGAGTT+GGG 0.537125 1:+27139841 MsG0180001795.01.T01:CDS
CTGAGTGGATCCATCATCCA+TGG 0.545436 1:+27139797 MsG0180001795.01.T01:CDS
TGAAAATGTTGCTTATACCA+TGG 0.545694 1:+27139069 MsG0180001795.01.T01:CDS
CTCAAGCGATATTCAAGATG+TGG 0.547884 1:+27139917 MsG0180001795.01.T01:CDS
GAAATGGATCCCACATAAAG+AGG 0.551116 1:+27140608 MsG0180001795.01.T01:three_prime_UTR
CCGTCGAGACGCCATTGCTA+GGG 0.553694 1:+27138889 MsG0180001795.01.T01:CDS
CAACTTTATATTAGTAGATG+AGG 0.554125 1:-27140306 None:intergenic
GCAGGAGGTAATCCTGTTCG+AGG 0.554222 1:+27136874 MsG0180001795.01.T01:five_prime_UTR
CAAGAGCGTGGTCTCCAGGT+TGG 0.554242 1:+27138589 MsG0180001795.01.T01:CDS
TGTCAATTAATTCTAGCTCA+AGG 0.557394 1:+27138340 MsG0180001795.01.T01:CDS
GGATGATGGATCCACTCAGT+TGG 0.557800 1:-27139793 None:intergenic
ATAGTTTGGTGTATGAGTGA+AGG 0.561361 1:+27137148 MsG0180001795.01.T01:exon
TGGGTCTCACCTCTTTATGT+GGG 0.561928 1:-27140617 None:intergenic
AAGCCATATTTCGTCCGATG+TGG 0.562792 1:-27140700 None:intergenic
ATTTGGTGTCCCAAAGAGGA+AGG 0.563548 1:+27137304 MsG0180001795.01.T01:CDS
ACAGTATGTGGTGCATTCCA+TGG 0.564702 1:-27139814 None:intergenic
CCCTAGCAATGGCGTCTCGA+CGG 0.565712 1:-27138889 None:intergenic
GTGGTGCATTCCATGGATGA+TGG 0.566885 1:-27139807 None:intergenic
CCTATTGGGTGAAACCCATG+TGG 0.568611 1:-27140637 None:intergenic
CTACTAATATAAAGTTGTCA+TGG 0.571307 1:+27140312 MsG0180001795.01.T01:three_prime_UTR
TTGGGACACCAAATAAAGAC+AGG 0.576690 1:-27137295 None:intergenic
ATTCAAGATGTGGGAAGATG+AGG 0.577093 1:+27139927 MsG0180001795.01.T01:CDS
ATCCATGTGGTACCACACAT+TGG 0.579023 1:+27140586 MsG0180001795.01.T01:three_prime_UTR
TGGGTTGGCAGTATATCTCC+GGG 0.580136 1:+27139153 MsG0180001795.01.T01:CDS
CTGATGGTCACGAGCTTGAG+CGG 0.582318 1:+27139183 MsG0180001795.01.T01:CDS
AGCCATATTTCGTCCGATGT+GGG 0.582579 1:-27140699 None:intergenic
TTCCAATGTGTGGTACCACA+TGG 0.583823 1:-27140588 None:intergenic
CTTTCATTATATATATTCCA+CGG 0.585534 1:-27138235 None:intergenic
TCTCTTTCTAGTTCTTGGAA+AGG 0.585854 1:-27140800 None:intergenic
ACAATCTCCACAACCCACTT+GGG 0.587393 1:-27137121 None:intergenic
TGGTCACGAGCTTGAGCGGT+TGG 0.592178 1:+27139187 MsG0180001795.01.T01:CDS
ATTGATATATGAGAAATGCT+AGG 0.592933 1:-27140828 None:intergenic
GGCAAGGTGTCAATATCACC+AGG 0.594746 1:+27137094 MsG0180001795.01.T01:five_prime_UTR
CTTATCAAGCGTACTGACAC+CGG 0.596040 1:+27140180 MsG0180001795.01.T01:CDS
ATATATCAAGAGAAGTGCTA+TGG 0.597633 1:+27140511 MsG0180001795.01.T01:three_prime_UTR
CCACATGTTCCCTCCGCAGG+AGG 0.597765 1:+27136859 MsG0180001795.01.T01:five_prime_UTR
GTGACCATCAGGTAAGCTCC+CGG 0.601745 1:-27139171 None:intergenic
AAGGCGAATACGTTCGACAA+TGG 0.606033 1:+27139749 MsG0180001795.01.T01:CDS
GAATCGAACCTGAGACCTTG+AGG 0.606452 1:+27137056 MsG0180001795.01.T01:five_prime_UTR
TTGAAAGTGATATCTTGGGT+TGG 0.607572 1:+27139138 MsG0180001795.01.T01:CDS
TCAAGCGATATTCAAGATGT+GGG 0.609126 1:+27139918 MsG0180001795.01.T01:CDS
CTTTATTTGGTGTCCCAAAG+AGG 0.613820 1:+27137300 MsG0180001795.01.T01:CDS
CCTCCTGCGGAGGGAACATG+TGG 0.616014 1:-27136859 None:intergenic
CGAGTACTCTCTAAATCCAA+TGG 0.617781 1:-27138838 None:intergenic
AACAGGATTACCTCCTGCGG+AGG 0.622329 1:-27136869 None:intergenic
CTATTGGGTGAAACCCATGT+GGG 0.625651 1:-27140636 None:intergenic
GAGGAGCACACTCTCAGGCA+AGG 0.629332 1:+27137078 MsG0180001795.01.T01:five_prime_UTR
ATCACCAGGCTAACCCAAGT+GGG 0.632433 1:+27137108 MsG0180001795.01.T01:five_prime_UTR
ATTTCTGTGCAAAGCTACAA+CGG 0.634526 1:+27138196 MsG0180001795.01.T01:CDS
TTTATCCGGGTAGAGTGTCG+AGG 0.638088 1:+27137332 MsG0180001795.01.T01:CDS
TTATATTAGTAGATGAGGAG+AGG 0.639153 1:-27140301 None:intergenic
TTGCTTATACCATGGAAATG+GGG 0.644081 1:+27139077 MsG0180001795.01.T01:CDS
GCTAGAATTAATTGACAAGG+AGG 0.646413 1:-27138334 None:intergenic
TGGCAAGAATTCCAACTGAG+TGG 0.655146 1:+27139782 MsG0180001795.01.T01:CDS
ATCTCCGGGAGCTTACCTGA+TGG 0.656477 1:+27139167 MsG0180001795.01.T01:CDS
TGGGATCCATTTCCAATGTG+TGG 0.656766 1:-27140598 None:intergenic
ACAGGATTACCTCCTGCGGA+GGG 0.657092 1:-27136868 None:intergenic
TTGATCAATACATGACACTC+CGG 0.657653 1:-27140199 None:intergenic
AATATATGGAGATAGGAGTG+AGG 0.659552 1:-27138700 None:intergenic
AGACTGTTAGAAAGAGTGTG+TGG 0.660535 1:-27140534 None:intergenic
GGGACGAAATACGATCCAGA+AGG 0.661141 1:+27139730 MsG0180001795.01.T01:CDS
GATGCTCTTAACACAGTATG+TGG 0.661825 1:-27139826 None:intergenic
AGGTTGGAGCAAAAGTGACA+AGG 0.665168 1:+27138605 MsG0180001795.01.T01:CDS
TGAGCGGTTGGATGATCCAG+AGG 0.665824 1:+27139199 MsG0180001795.01.T01:CDS
ATAAAGAGGTGAGACCCACA+TGG 0.666124 1:+27140622 MsG0180001795.01.T01:three_prime_UTR
TATCACCAGGCTAACCCAAG+TGG 0.666254 1:+27137107 MsG0180001795.01.T01:five_prime_UTR
GAGACTTGCTGCATGAACCG+TGG 0.669371 1:+27138218 MsG0180001795.01.T01:CDS
ATGCATTATTAGCAAGAGCG+TGG 0.680505 1:+27138577 MsG0180001795.01.T01:CDS
TGAGCTAGAATTAATTGACA+AGG 0.683452 1:-27138337 None:intergenic
TCGAACAGGATTACCTCCTG+CGG 0.684182 1:-27136872 None:intergenic
TCGAACCTGAGACCTTGAGG+AGG 0.685881 1:+27137059 MsG0180001795.01.T01:five_prime_UTR
TCAAAGTCAGAGTCCCACAT+CGG 0.688376 1:+27140686 MsG0180001795.01.T01:three_prime_UTR
ATCCGGGTAGAGTGTCGAGG+TGG 0.688806 1:+27137335 MsG0180001795.01.T01:CDS
TAAGATGCAGCAAAACACAA+AGG 0.691176 1:-27136789 None:intergenic
ATATGGTTACTTATACGAAG+AGG 0.691484 1:-27140492 None:intergenic
TTAGCCGACCCAAATTAGCA+GGG 0.692763 1:+27137032 MsG0180001795.01.T01:five_prime_UTR
CTTATTGGGTGAAATCCATG+TGG 0.704467 1:+27140573 MsG0180001795.01.T01:three_prime_UTR
TAAAGAGGTGAGACCCACAT+GGG 0.706173 1:+27140623 MsG0180001795.01.T01:three_prime_UTR
GACGAAGAAGTAGCTCCGCG+TGG 0.712976 1:-27140045 None:intergenic
TTGAAGGACAAGGCTCCACG+CGG 0.723293 1:+27140030 MsG0180001795.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATGTTAAGATGTAAAAA+TGG - Chr1:27140861-27140880 None:intergenic 15.0%
!! CTAAAAACAAAAATATATGT+AGG - Chr1:27136835-27136854 None:intergenic 15.0%
!! TCAAAAAATAGATTAAATCT+TGG + Chr1:27138666-27138685 MsG0180001795.01.T01:CDS 15.0%
!!! CATCTTAACATTTTATTAAA+TGG + Chr1:27140867-27140886 MsG0180001795.01.T01:three_prime_UTR 15.0%
!!! TTTGTTTGTTTGTTATAAAA+TGG + Chr1:27136599-27136618 MsG0180001795.01.T01:five_prime_UTR 15.0%
!! AATTCTCCAAAATGAATATA+TGG - Chr1:27138717-27138736 None:intergenic 20.0%
!! ATGATTATATCATACTATCA+CGG - Chr1:27139265-27139284 None:intergenic 20.0%
!! CAAACAAAAAAAAAAGACTA+AGG - Chr1:27136583-27136602 None:intergenic 20.0%
!! CTTTCATTATATATATTCCA+CGG - Chr1:27138238-27138257 None:intergenic 20.0%
!! TAGTTAAAAGTAGAAATTTG+AGG + Chr1:27136982-27137001 MsG0180001795.01.T01:five_prime_UTR 20.0%
!! TGGAATATATATAATGAAAG+TGG + Chr1:27138238-27138257 MsG0180001795.01.T01:CDS 20.0%
!! TGTAACAAAACTAATATAGT+TGG + Chr1:27137736-27137755 MsG0180001795.01.T01:intron 20.0%
!!! ATACTTTTTACAAAACAAAG+AGG + Chr1:27136702-27136721 MsG0180001795.01.T01:five_prime_UTR 20.0%
!!! ATTTGTTTCTATTGTTGTTT+TGG + Chr1:27138485-27138504 MsG0180001795.01.T01:intron 20.0%
!!! CATTTTTGTTTTTTCCTATT+AGG - Chr1:27140120-27140139 None:intergenic 20.0%
!!! TATTTTTTGAGTAGTGAATT+AGG - Chr1:27138656-27138675 None:intergenic 20.0%
! AATGTTTCAGTCTTTCTATT+TGG + Chr1:27137985-27138004 MsG0180001795.01.T01:intron 25.0%
! ACCAATCATTGAAATAGATT+TGG + Chr1:27139879-27139898 MsG0180001795.01.T01:CDS 25.0%
! ATAAGGTTACTCATATTATC+CGG - Chr1:27140165-27140184 None:intergenic 25.0%
! ATATATACGCTACTACAATT+TGG + Chr1:27138374-27138393 MsG0180001795.01.T01:intron 25.0%
! ATTGATATATGAGAAATGCT+AGG - Chr1:27140831-27140850 None:intergenic 25.0%
! CAAAATGAATATATGGAGAT+AGG - Chr1:27138710-27138729 None:intergenic 25.0%
! CAACTTTATATTAGTAGATG+AGG - Chr1:27140309-27140328 None:intergenic 25.0%
! CTACTAATATAAAGTTGTCA+TGG + Chr1:27140312-27140331 MsG0180001795.01.T01:three_prime_UTR 25.0%
! CTATTTGGTTATTTGATATG+CGG + Chr1:27138000-27138019 MsG0180001795.01.T01:intron 25.0%
! GGAATGAAAAATCTGAAAAT+GGG + Chr1:27137181-27137200 MsG0180001795.01.T01:CDS 25.0%
! GTCTCAAAACATAAACAAAA+AGG - Chr1:27137854-27137873 None:intergenic 25.0%
! GTTGTGTTTAATCATCTTTA+TGG + Chr1:27137487-27137506 MsG0180001795.01.T01:CDS 25.0%
! TAACATCAAAGAAAAACTAG+CGG + Chr1:27138165-27138184 MsG0180001795.01.T01:CDS 25.0%
! TGGAATGAAAAATCTGAAAA+TGG + Chr1:27137180-27137199 MsG0180001795.01.T01:CDS 25.0%
!! AAAGAAATCCATCTTTTCAA+TGG - Chr1:27137522-27137541 None:intergenic 25.0%
!! AATGGGGAATGAAATATTTT+TGG + Chr1:27139093-27139112 MsG0180001795.01.T01:CDS 25.0%
!! AATTCCAAAAGTTTTCTTGA+AGG + Chr1:27140014-27140033 MsG0180001795.01.T01:CDS 25.0%
!! ACAAAAATGTATCGATAAAG+TGG + Chr1:27140131-27140150 MsG0180001795.01.T01:CDS 25.0%
!! ATGGGGAATGAAATATTTTT+GGG + Chr1:27139094-27139113 MsG0180001795.01.T01:CDS 25.0%
!! ATTAAATGGTGATGACTTTA+TGG + Chr1:27140881-27140900 MsG0180001795.01.T01:three_prime_UTR 25.0%
!! CTATCTCCATATATTCATTT+TGG + Chr1:27138708-27138727 MsG0180001795.01.T01:CDS 25.0%
!! GTTTTACAAATTTATCCTTC+CGG + Chr1:27137658-27137677 MsG0180001795.01.T01:intron 25.0%
!!! AACTTCATGTTTATTTTCTG+AGG - Chr1:27139971-27139990 None:intergenic 25.0%
!!! ATATTTGGATTCTGAAGTAT+TGG - Chr1:27140087-27140106 None:intergenic 25.0%
!!! GATCAACATAACTTGTTTAA+CGG + Chr1:27139323-27139342 MsG0180001795.01.T01:intron 25.0%
!!! GGAACTTAAAATTTTTTCCT+TGG + Chr1:27138910-27138929 MsG0180001795.01.T01:CDS 25.0%
!!! TCTATTTCAATGATTGGTTT+TGG - Chr1:27139877-27139896 None:intergenic 25.0%
!!! TTTTGTTTTTTCCTATTAGG+AGG - Chr1:27140117-27140136 None:intergenic 25.0%
AAGTGATTCCATTGAAAAGA+TGG + Chr1:27137511-27137530 MsG0180001795.01.T01:intron 30.0%
AATTAATTGACAAGGAGGAA+TGG - Chr1:27138332-27138351 None:intergenic 30.0%
ATAGCACTTCTCTTGATATA+TGG - Chr1:27140512-27140531 None:intergenic 30.0%
ATATGGTTACTTATACGAAG+AGG - Chr1:27140495-27140514 None:intergenic 30.0%
ATCTGAAAATGGGTATGAAT+AGG + Chr1:27137191-27137210 MsG0180001795.01.T01:CDS 30.0%
ATTAATTGACAAGGAGGAAT+GGG - Chr1:27138331-27138350 None:intergenic 30.0%
CAGATATTATGGAAAAACGA+AGG + Chr1:27138774-27138793 MsG0180001795.01.T01:CDS 30.0%
CATAGCATTTATTACGATTG+TGG + Chr1:27137706-27137725 MsG0180001795.01.T01:intron 30.0%
GAATGAGTGTGATAAATTCA+TGG - Chr1:27137956-27137975 None:intergenic 30.0%
GATATGAAACATGTCAGAAA+AGG - Chr1:27138077-27138096 None:intergenic 30.0%
GCCAAATCTATTTCAATGAT+TGG - Chr1:27139883-27139902 None:intergenic 30.0%
TACCACGAGAATTAACAAAT+CGG + Chr1:27137600-27137619 MsG0180001795.01.T01:intron 30.0%
TACCGATCCTTCAAAATTTA+AGG + Chr1:27138935-27138954 MsG0180001795.01.T01:CDS 30.0%
TCTATTCCAAAAAGGATCAA+AGG - Chr1:27138278-27138297 None:intergenic 30.0%
TGAATTTATCACACTCATTC+CGG + Chr1:27137956-27137975 MsG0180001795.01.T01:intron 30.0%
TGAGCTAGAATTAATTGACA+AGG - Chr1:27138340-27138359 None:intergenic 30.0%
TGGAGATTGTACTTATAGTT+TGG + Chr1:27137134-27137153 MsG0180001795.01.T01:five_prime_UTR 30.0%
TTAGGAGGATCATCAATATT+TGG - Chr1:27140102-27140121 None:intergenic 30.0%
TTATATTAGTAGATGAGGAG+AGG - Chr1:27140304-27140323 None:intergenic 30.0%
TTCTTCGTCAAATGATCAAA+AGG + Chr1:27140059-27140078 MsG0180001795.01.T01:CDS 30.0%
! AAAACAAAGAGGCATAATCT+TGG + Chr1:27136713-27136732 MsG0180001795.01.T01:five_prime_UTR 30.0%
! AAAAGTTTTCTTGAAGGACA+AGG + Chr1:27140020-27140039 MsG0180001795.01.T01:CDS 30.0%
! AACTTTTGTGAACAGATTCA+AGG + Chr1:27139709-27139728 MsG0180001795.01.T01:intron 30.0%
! ACTTTTGTGAACAGATTCAA+GGG + Chr1:27139710-27139729 MsG0180001795.01.T01:intron 30.0%
! ATATTGATGATCCTCCTAAT+AGG + Chr1:27140103-27140122 MsG0180001795.01.T01:CDS 30.0%
! ATCCTTCAAAATTTAAGGCT+TGG + Chr1:27138940-27138959 MsG0180001795.01.T01:CDS 30.0%
! CATTTTCCAAAGTACACATA+CGG + Chr1:27139615-27139634 MsG0180001795.01.T01:intron 30.0%
! TAGGTGATTTTCGACAAATT+CGG - Chr1:27138637-27138656 None:intergenic 30.0%
! TGAAAATGTTGCTTATACCA+TGG + Chr1:27139069-27139088 MsG0180001795.01.T01:CDS 30.0%
! TTACAACCTTTGATCCTTTT+TGG + Chr1:27138269-27138288 MsG0180001795.01.T01:CDS 30.0%
! TTGTCCTTCAAGAAAACTTT+TGG - Chr1:27140021-27140040 None:intergenic 30.0%
!! AGCCTTAAATTTTGAAGGAT+CGG - Chr1:27138940-27138959 None:intergenic 30.0%
!! ATATATCAAGAGAAGTGCTA+TGG + Chr1:27140511-27140530 MsG0180001795.01.T01:three_prime_UTR 30.0%
!! CTGTTTTTCCTGTCTTTATT+TGG + Chr1:27137287-27137306 MsG0180001795.01.T01:CDS 30.0%
!! TGTCAATTAATTCTAGCTCA+AGG + Chr1:27138340-27138359 MsG0180001795.01.T01:CDS 30.0%
!!! AATTTTAAGTTCCCTAGCAA+TGG - Chr1:27138903-27138922 None:intergenic 30.0%
AAAAACGAAGGAAACAACGT+TGG + Chr1:27138786-27138805 MsG0180001795.01.T01:CDS 35.0%
AAAGAAAAACTAGCGGAACT+CGG + Chr1:27138172-27138191 MsG0180001795.01.T01:CDS 35.0%
AACCCAAGATATCACTTTCA+AGG - Chr1:27139139-27139158 None:intergenic 35.0%
AATATATGGAGATAGGAGTG+AGG - Chr1:27138703-27138722 None:intergenic 35.0%
ACTGGATCTGTTAAAAGAAG+TGG - Chr1:27138127-27138146 None:intergenic 35.0%
ACTTGAATTTGTAGACAGGA+TGG - Chr1:27138461-27138480 None:intergenic 35.0%
AGACTGAAACATTCAGATAC+CGG - Chr1:27137978-27137997 None:intergenic 35.0%
ATAAAACTGTCCTTCCTCTT+TGG - Chr1:27137317-27137336 None:intergenic 35.0%
ATTGTTGAGTGAGACATGTA+GGG + Chr1:27136649-27136668 MsG0180001795.01.T01:five_prime_UTR 35.0%
ATTTCTGTGCAAAGCTACAA+CGG + Chr1:27138196-27138215 MsG0180001795.01.T01:CDS 35.0%
CACGAACGAAACAGATATTA+TGG + Chr1:27138763-27138782 MsG0180001795.01.T01:CDS 35.0%
CTTGAACATGTGTTCATAAG+CGG + Chr1:27140720-27140739 MsG0180001795.01.T01:intron 35.0%
CTTGGAAAGGAAATGATAGT+TGG - Chr1:27140790-27140809 None:intergenic 35.0%
GACCTTGAAAGTGATATCTT+GGG + Chr1:27139134-27139153 MsG0180001795.01.T01:CDS 35.0%
GATCAATCACTGAAATCTCT+TGG + Chr1:27137385-27137404 MsG0180001795.01.T01:CDS 35.0%
GCTAGAATTAATTGACAAGG+AGG - Chr1:27138337-27138356 None:intergenic 35.0%
GGTTAACAGAATACATGAGT+GGG + Chr1:27139511-27139530 MsG0180001795.01.T01:intron 35.0%
GTATCCTGATACTGAAACAA+CGG - Chr1:27137785-27137804 None:intergenic 35.0%
GTATGAATAGGACCATAGTT+TGG + Chr1:27137203-27137222 MsG0180001795.01.T01:CDS 35.0%
GTTGCTTATACCATGGAAAT+GGG + Chr1:27139076-27139095 MsG0180001795.01.T01:CDS 35.0%
TAAAACTGTCCTTCCTCTTT+GGG - Chr1:27137316-27137335 None:intergenic 35.0%
TAAAAGAAGTGGAGATCATC+AGG - Chr1:27138116-27138135 None:intergenic 35.0%
TAAGATGCAGCAAAACACAA+AGG - Chr1:27136792-27136811 None:intergenic 35.0%
TATTGTTGAGTGAGACATGT+AGG + Chr1:27136648-27136667 MsG0180001795.01.T01:five_prime_UTR 35.0%
TATTTCATTCCCCATTTCCA+TGG - Chr1:27139089-27139108 None:intergenic 35.0%
TCAAGCGATATTCAAGATGT+GGG + Chr1:27139918-27139937 MsG0180001795.01.T01:CDS 35.0%
TCATATATTCCAAGCATCTG+TGG + Chr1:27137891-27137910 MsG0180001795.01.T01:intron 35.0%
TCGTGATTTCTTGTATTGCA+AGG + Chr1:27139226-27139245 MsG0180001795.01.T01:intron 35.0%
TCTCACTTGAATTTGTAGAC+AGG - Chr1:27138465-27138484 None:intergenic 35.0%
TGACCTTGAAAGTGATATCT+TGG + Chr1:27139133-27139152 MsG0180001795.01.T01:CDS 35.0%
TGCAAGCATCTATTCCAAAA+AGG - Chr1:27138286-27138305 None:intergenic 35.0%
TGCCAAAGGAAAAGATCTAA+CGG - Chr1:27139481-27139500 None:intergenic 35.0%
TTGAAAGTGATATCTTGGGT+TGG + Chr1:27139138-27139157 MsG0180001795.01.T01:CDS 35.0%
TTGAACATGTGTTCATAAGC+GGG + Chr1:27140721-27140740 MsG0180001795.01.T01:intron 35.0%
TTGATCAATACATGACACTC+CGG - Chr1:27140202-27140221 None:intergenic 35.0%
TTGCTTATACCATGGAAATG+GGG + Chr1:27139077-27139096 MsG0180001795.01.T01:CDS 35.0%
! AAAACCGTTGTTTCAGTATC+AGG + Chr1:27137778-27137797 MsG0180001795.01.T01:intron 35.0%
! ATAGGACCATAGTTTGGTTT+AGG + Chr1:27137209-27137228 MsG0180001795.01.T01:CDS 35.0%
! CTCCAAGCCTTAAATTTTGA+AGG - Chr1:27138945-27138964 None:intergenic 35.0%
! CTTCAAAATTTAAGGCTTGG+AGG + Chr1:27138943-27138962 MsG0180001795.01.T01:CDS 35.0%
! TAGTACTCTTAAAGCACTTC+TGG + Chr1:27137435-27137454 MsG0180001795.01.T01:CDS 35.0%
! TGTTGCTTATACCATGGAAA+TGG + Chr1:27139075-27139094 MsG0180001795.01.T01:CDS 35.0%
!! AACACTCTCTTTCTAGTTCT+TGG - Chr1:27140808-27140827 None:intergenic 35.0%
!! ATAGTTTGGTGTATGAGTGA+AGG + Chr1:27137148-27137167 MsG0180001795.01.T01:exon 35.0%
!! ATTTTGGAGAATTGAGTGTG+AGG + Chr1:27138724-27138743 MsG0180001795.01.T01:CDS 35.0%
!! CAACATAACTTGTTTAACGG+AGG + Chr1:27139326-27139345 MsG0180001795.01.T01:intron 35.0%
!! GTTCTAGCTTTAGTTGTTTG+TGG + Chr1:27136512-27136531 MsG0180001795.01.T01:five_prime_UTR 35.0%
!! TACCGATTTGTTAATTCTCG+TGG - Chr1:27137605-27137624 None:intergenic 35.0%
!! TCTCTTTCTAGTTCTTGGAA+AGG - Chr1:27140803-27140822 None:intergenic 35.0%
!!! TCTATTGTTGTTTTGGTGAC+AGG + Chr1:27138492-27138511 MsG0180001795.01.T01:intron 35.0%
AAGAAATCACGACTTACCTC+TGG - Chr1:27139218-27139237 None:intergenic 40.0%
AAGACACCGTATGTGTACTT+TGG - Chr1:27139624-27139643 None:intergenic 40.0%
ACACATATCTCAACCGAAAC+AGG - Chr1:27136924-27136943 None:intergenic 40.0%
ACTAAATGCGACACCTGTTT+CGG + Chr1:27136908-27136927 MsG0180001795.01.T01:five_prime_UTR 40.0%
ACTCTTTCTAACAGTCTCTC+TGG + Chr1:27140540-27140559 MsG0180001795.01.T01:three_prime_UTR 40.0%
ATCCCTCCTAAACCAAACTA+TGG - Chr1:27137218-27137237 None:intergenic 40.0%
ATGCATTATTAGCAAGAGCG+TGG + Chr1:27138577-27138596 MsG0180001795.01.T01:CDS 40.0%
ATTCAAGATGTGGGAAGATG+AGG + Chr1:27139927-27139946 MsG0180001795.01.T01:CDS 40.0%
CACATACGGTGTCTTTACTT+TGG + Chr1:27139629-27139648 MsG0180001795.01.T01:intron 40.0%
CGAGTACTCTCTAAATCCAA+TGG - Chr1:27138841-27138860 None:intergenic 40.0%
CGGTTAACAGAATACATGAG+TGG + Chr1:27139510-27139529 MsG0180001795.01.T01:intron 40.0%
CTAACACAACCCCAAAAAAC+CGG - Chr1:27140766-27140785 None:intergenic 40.0%
CTAACACTCACTCTCCTATT+GGG - Chr1:27140654-27140673 None:intergenic 40.0%
CTCAAGCGATATTCAAGATG+TGG + Chr1:27139917-27139936 MsG0180001795.01.T01:CDS 40.0%
CTCATTCCTGCATCAACTAA+TGG - Chr1:27138987-27139006 None:intergenic 40.0%
CTTATTGGGTGAAATCCATG+TGG + Chr1:27140573-27140592 MsG0180001795.01.T01:three_prime_UTR 40.0%
GAAATGGATCCCACATAAAG+AGG + Chr1:27140608-27140627 MsG0180001795.01.T01:three_prime_UTR 40.0%
GAAGCAGTCTCTTTATCACT+TGG + Chr1:27137363-27137382 MsG0180001795.01.T01:CDS 40.0%
GAATACATGAGTGGGTCAAT+AGG + Chr1:27139519-27139538 MsG0180001795.01.T01:intron 40.0%
GATGCTCTTAACACAGTATG+TGG - Chr1:27139829-27139848 None:intergenic 40.0%
GTTGGAATTCTTGCCAATTC+AGG - Chr1:27139778-27139797 None:intergenic 40.0%
TAGGAGGGATCTAAGAATTG+AGG + Chr1:27137228-27137247 MsG0180001795.01.T01:CDS 40.0%
TCGATTCTCCCTGCTAATTT+GGG - Chr1:27137043-27137062 None:intergenic 40.0%
TCTAACACTCACTCTCCTAT+TGG - Chr1:27140655-27140674 None:intergenic 40.0%
TGAACATGTGTTCATAAGCG+GGG + Chr1:27140722-27140741 MsG0180001795.01.T01:intron 40.0%
TGAGGAGAGGAACAATGTTA+TGG - Chr1:27140291-27140310 None:intergenic 40.0%
TGATCACGAACAAGTGAAAC+TGG - Chr1:27138145-27138164 None:intergenic 40.0%
TGTAGGAGATATCTGATCAC+TGG - Chr1:27136818-27136837 None:intergenic 40.0%
TTCCTTTGGCACAATACATG+CGG + Chr1:27139490-27139509 MsG0180001795.01.T01:intron 40.0%
TTCGATTCTCCCTGCTAATT+TGG - Chr1:27137044-27137063 None:intergenic 40.0%
TTGGGACACCAAATAAAGAC+AGG - Chr1:27137298-27137317 None:intergenic 40.0%
TTGTTAATTCTCGTGGTAGC+AGG - Chr1:27137598-27137617 None:intergenic 40.0%
TTTGAAGGATCGGTATTCCA+AGG - Chr1:27138930-27138949 None:intergenic 40.0%
! AAATTTAAGGCTTGGAGGCT+AGG + Chr1:27138948-27138967 MsG0180001795.01.T01:CDS 40.0%
! ACATAAACCGATTCTCACTC+CGG - Chr1:27137680-27137699 None:intergenic 40.0%
! AGACTGTTAGAAAGAGTGTG+TGG - Chr1:27140537-27140556 None:intergenic 40.0%
! AGAGTTCTTGCTGTAACGTT+AGG - Chr1:27139679-27139698 None:intergenic 40.0%
! CACCGTTAGATCTTTTCCTT+TGG + Chr1:27139476-27139495 MsG0180001795.01.T01:intron 40.0%
! GACCATAGTTTGGTTTAGGA+GGG + Chr1:27137213-27137232 MsG0180001795.01.T01:CDS 40.0%
! GGATATCCATTAGTTGATGC+AGG + Chr1:27138978-27138997 MsG0180001795.01.T01:CDS 40.0%
! TGGTGTATGAGTGAAGGTTT+TGG + Chr1:27137154-27137173 MsG0180001795.01.T01:exon 40.0%
!! AGAGGAAGGACAGTTTTATC+CGG + Chr1:27137318-27137337 MsG0180001795.01.T01:CDS 40.0%
!! CATACTGTGTTAAGAGCATC+AGG + Chr1:27139829-27139848 MsG0180001795.01.T01:CDS 40.0%
!! CTTTATTTGGTGTCCCAAAG+AGG + Chr1:27137300-27137319 MsG0180001795.01.T01:CDS 40.0%
!! GCGTTGCTATTTATCGCAAT+TGG + Chr1:27139433-27139452 MsG0180001795.01.T01:intron 40.0%
!!! ACCTCATTAGCCGGTTTTTT+GGG + Chr1:27140753-27140772 MsG0180001795.01.T01:intron 40.0%
!!! AGAGTGCAACACTTTTTCTC+AGG + Chr1:27138814-27138833 MsG0180001795.01.T01:CDS 40.0%
!!! ATGAGTGAAGGTTTTGGTTG+TGG + Chr1:27137160-27137179 MsG0180001795.01.T01:CDS 40.0%
!!! GAGTGCAACACTTTTTCTCA+GGG + Chr1:27138815-27138834 MsG0180001795.01.T01:CDS 40.0%
AAAAACCGGCTAATGAGGTG+AGG - Chr1:27140752-27140771 None:intergenic 45.0%
AACCGCATGTATTGTGCCAA+AGG - Chr1:27139495-27139514 None:intergenic 45.0%
AAGCCATATTTCGTCCGATG+TGG - Chr1:27140703-27140722 None:intergenic 45.0%
AAGGCGAATACGTTCGACAA+TGG + Chr1:27139749-27139768 MsG0180001795.01.T01:CDS 45.0%
ACAATCTCCACAACCCACTT+GGG - Chr1:27137124-27137143 None:intergenic 45.0%
ACAGTATGTGGTGCATTCCA+TGG - Chr1:27139817-27139836 None:intergenic 45.0%
AGCCATATTTCGTCCGATGT+GGG - Chr1:27140702-27140721 None:intergenic 45.0%
AGGTTGGAGCAAAAGTGACA+AGG + Chr1:27138605-27138624 MsG0180001795.01.T01:CDS 45.0%
AGTGCTTGAACTCTGTCTCT+TGG - Chr1:27140253-27140272 None:intergenic 45.0%
ATAAAGAGGTGAGACCCACA+TGG + Chr1:27140622-27140641 MsG0180001795.01.T01:three_prime_UTR 45.0%
ATCCATGTGGTACCACACAT+TGG + Chr1:27140586-27140605 MsG0180001795.01.T01:three_prime_UTR 45.0%
ATGCAGGAATGAGAGAGCTT+TGG + Chr1:27138994-27139013 MsG0180001795.01.T01:CDS 45.0%
ATTAGCCGACCCAAATTAGC+AGG + Chr1:27137031-27137050 MsG0180001795.01.T01:five_prime_UTR 45.0%
CGATAAAGTGGATCGAGAAC+CGG + Chr1:27140143-27140162 MsG0180001795.01.T01:CDS 45.0%
CTATTGGGTGAAACCCATGT+GGG - Chr1:27140639-27140658 None:intergenic 45.0%
CTGGCACACACTCTCTTATT+GGG + Chr1:27140559-27140578 MsG0180001795.01.T01:three_prime_UTR 45.0%
GTAATCCTCACCTCATTAGC+CGG + Chr1:27140744-27140763 MsG0180001795.01.T01:intron 45.0%
GTGGTACCACACATTGGAAA+TGG + Chr1:27140592-27140611 MsG0180001795.01.T01:three_prime_UTR 45.0%
TAAAGAGGTGAGACCCACAT+GGG + Chr1:27140623-27140642 MsG0180001795.01.T01:three_prime_UTR 45.0%
TACAATCTCCACAACCCACT+TGG - Chr1:27137125-27137144 None:intergenic 45.0%
TATCCTTCCGGAGTGAGAAT+CGG + Chr1:27137670-27137689 MsG0180001795.01.T01:intron 45.0%
TCAAAGTCAGAGTCCCACAT+CGG + Chr1:27140686-27140705 MsG0180001795.01.T01:three_prime_UTR 45.0%
TCACTGAAATCTCTTGGAGC+TGG + Chr1:27137391-27137410 MsG0180001795.01.T01:CDS 45.0%
TCGACAATGGCTACCTGAAT+TGG + Chr1:27139762-27139781 MsG0180001795.01.T01:CDS 45.0%
TCTGGCACACACTCTCTTAT+TGG + Chr1:27140558-27140577 MsG0180001795.01.T01:three_prime_UTR 45.0%
TGAGTGAGACATGTAGGGAA+AGG + Chr1:27136654-27136673 MsG0180001795.01.T01:five_prime_UTR 45.0%
TGCAGGAATGAGAGAGCTTT+GGG + Chr1:27138995-27139014 MsG0180001795.01.T01:CDS 45.0%
TGGCAAGAATTCCAACTGAG+TGG + Chr1:27139782-27139801 MsG0180001795.01.T01:CDS 45.0%
TGGGATCCATTTCCAATGTG+TGG - Chr1:27140601-27140620 None:intergenic 45.0%
TGGGTCTCACCTCTTTATGT+GGG - Chr1:27140620-27140639 None:intergenic 45.0%
TTAGCCGACCCAAATTAGCA+GGG + Chr1:27137032-27137051 MsG0180001795.01.T01:five_prime_UTR 45.0%
TTCCAATGTGTGGTACCACA+TGG - Chr1:27140591-27140610 None:intergenic 45.0%
TTCTCCCTGCTAATTTGGGT+CGG - Chr1:27137039-27137058 None:intergenic 45.0%
! AGAGCATCAGGTGTAGAGTT+GGG + Chr1:27139841-27139860 MsG0180001795.01.T01:CDS 45.0%
! CTTATCAAGCGTACTGACAC+CGG + Chr1:27140180-27140199 MsG0180001795.01.T01:CDS 45.0%
! GGACCATAGTTTGGTTTAGG+AGG + Chr1:27137212-27137231 MsG0180001795.01.T01:CDS 45.0%
!! AAGAGCATCAGGTGTAGAGT+TGG + Chr1:27139840-27139859 MsG0180001795.01.T01:CDS 45.0%
!! ATTTGGTGTCCCAAAGAGGA+AGG + Chr1:27137304-27137323 MsG0180001795.01.T01:CDS 45.0%
!! GAGGAAGGACAGTTTTATCC+GGG + Chr1:27137319-27137338 MsG0180001795.01.T01:CDS 45.0%
!! TTGGGTTGGCAGTATATCTC+CGG + Chr1:27139152-27139171 MsG0180001795.01.T01:CDS 45.0%
!!! ACACTTTTTCTCAGGGCCAT+TGG + Chr1:27138822-27138841 MsG0180001795.01.T01:CDS 45.0%
!!! CACCTCATTAGCCGGTTTTT+TGG + Chr1:27140752-27140771 MsG0180001795.01.T01:intron 45.0%
!!! CCTCATTAGCCGGTTTTTTG+GGG + Chr1:27140754-27140773 MsG0180001795.01.T01:intron 45.0%
!!! CGGTTTTTTGGGGTTGTGTT+AGG + Chr1:27140764-27140783 MsG0180001795.01.T01:intron 45.0%
!!! TTGTCACTTTTGCTCCAACC+TGG - Chr1:27138606-27138625 None:intergenic 45.0%
ATCACCAGGCTAACCCAAGT+GGG + Chr1:27137108-27137127 MsG0180001795.01.T01:five_prime_UTR 50.0%
CCACATGGGTTTCACCCAAT+AGG + Chr1:27140637-27140656 MsG0180001795.01.T01:three_prime_UTR 50.0%
CCCCAAAAAACCGGCTAATG+AGG - Chr1:27140757-27140776 None:intergenic 50.0%
CCTATTGGGTGAAACCCATG+TGG - Chr1:27140640-27140659 None:intergenic 50.0%
CTGAGTGGATCCATCATCCA+TGG + Chr1:27139797-27139816 MsG0180001795.01.T01:CDS 50.0%
GAATCGAACCTGAGACCTTG+AGG + Chr1:27137056-27137075 MsG0180001795.01.T01:five_prime_UTR 50.0%
GGGACGAAATACGATCCAGA+AGG + Chr1:27139730-27139749 MsG0180001795.01.T01:CDS 50.0%
GTCCCACATCGGACGAAATA+TGG + Chr1:27140697-27140716 MsG0180001795.01.T01:three_prime_UTR 50.0%
GTGAGAGTTCCACAGATGCT+TGG - Chr1:27137903-27137922 None:intergenic 50.0%
GTGGGTCTCACCTCTTTATG+TGG - Chr1:27140621-27140640 None:intergenic 50.0%
GTGGTGCATTCCATGGATGA+TGG - Chr1:27139810-27139829 None:intergenic 50.0%
TATCACCAGGCTAACCCAAG+TGG + Chr1:27137107-27137126 MsG0180001795.01.T01:five_prime_UTR 50.0%
TCGAACAGGATTACCTCCTG+CGG - Chr1:27136875-27136894 None:intergenic 50.0%
TGCATTAGCTGCTGCTGCAA+GGG + Chr1:27137258-27137277 MsG0180001795.01.T01:CDS 50.0%
TGTCGAACGTATTCGCCTTC+TGG - Chr1:27139748-27139767 None:intergenic 50.0%
TTAAGGCTTGGAGGCTAGGT+AGG + Chr1:27138952-27138971 MsG0180001795.01.T01:CDS 50.0%
! AAACCGATTCTCACTCCGGA+AGG - Chr1:27137676-27137695 None:intergenic 50.0%
! CGGTGTCAGTACGCTTGATA+AGG - Chr1:27140182-27140201 None:intergenic 50.0%
! GGCAAGGTGTCAATATCACC+AGG + Chr1:27137094-27137113 MsG0180001795.01.T01:five_prime_UTR 50.0%
!! GGATGATGGATCCACTCAGT+TGG - Chr1:27139796-27139815 None:intergenic 50.0%
!! TGGGTTGGCAGTATATCTCC+GGG + Chr1:27139153-27139172 MsG0180001795.01.T01:CDS 50.0%
!! TTTATCCGGGTAGAGTGTCG+AGG + Chr1:27137332-27137351 MsG0180001795.01.T01:CDS 50.0%
AACAGGATTACCTCCTGCGG+AGG - Chr1:27136872-27136891 None:intergenic 55.0%
AATGGCGTCTCGACGGTGAA+TGG - Chr1:27138885-27138904 None:intergenic 55.0%
ACAGGATTACCTCCTGCGGA+GGG - Chr1:27136871-27136890 None:intergenic 55.0%
ATCTCCGGGAGCTTACCTGA+TGG + Chr1:27139167-27139186 MsG0180001795.01.T01:CDS 55.0%
CTGATGGTCACGAGCTTGAG+CGG + Chr1:27139183-27139202 MsG0180001795.01.T01:CDS 55.0%
CTGCATTAGCTGCTGCTGCA+AGG + Chr1:27137257-27137276 MsG0180001795.01.T01:CDS 55.0%
CTTGCAGCAGCAGCTAATGC+AGG - Chr1:27137259-27137278 None:intergenic 55.0%
GCAGGAGGTAATCCTGTTCG+AGG + Chr1:27136874-27136893 MsG0180001795.01.T01:five_prime_UTR 55.0%
GTGACCATCAGGTAAGCTCC+CGG - Chr1:27139174-27139193 None:intergenic 55.0%
TCGAACCTGAGACCTTGAGG+AGG + Chr1:27137059-27137078 MsG0180001795.01.T01:five_prime_UTR 55.0%
TGAGCGGTTGGATGATCCAG+AGG + Chr1:27139199-27139218 MsG0180001795.01.T01:CDS 55.0%
TGTCTGACAGTGCCTCGAAC+AGG - Chr1:27136889-27136908 None:intergenic 55.0%
TTAGCTGCTGCTGCAAGGGA+TGG + Chr1:27137262-27137281 MsG0180001795.01.T01:CDS 55.0%
TTGAAGGACAAGGCTCCACG+CGG + Chr1:27140030-27140049 MsG0180001795.01.T01:CDS 55.0%
! TGAGAGTGTGCTCCTCCTCA+AGG - Chr1:27137074-27137093 None:intergenic 55.0%
! TTAGCAAGAGCGTGGTCTCC+AGG + Chr1:27138585-27138604 MsG0180001795.01.T01:CDS 55.0%
! TTGAGGAGGAGCACACTCTC+AGG + Chr1:27137073-27137092 MsG0180001795.01.T01:five_prime_UTR 55.0%
!! ACAACCCACTTGGGTTAGCC+TGG - Chr1:27137115-27137134 None:intergenic 55.0%
!! AGGCTAACCCAAGTGGGTTG+TGG + Chr1:27137114-27137133 MsG0180001795.01.T01:five_prime_UTR 55.0%
!! ATGAGAGAGCTTTGGGCGAC+TGG + Chr1:27139002-27139021 MsG0180001795.01.T01:CDS 55.0%
!! GAGACTTGCTGCATGAACCG+TGG + Chr1:27138218-27138237 MsG0180001795.01.T01:CDS 55.0%
ACCGTCGAGACGCCATTGCT+AGG + Chr1:27138888-27138907 MsG0180001795.01.T01:CDS 60.0%
CACCACCTCGACACTCTACC+CGG - Chr1:27137340-27137359 None:intergenic 60.0%
CCCTAGCAATGGCGTCTCGA+CGG - Chr1:27138892-27138911 None:intergenic 60.0%
CCGTCGAGACGCCATTGCTA+GGG + Chr1:27138889-27138908 MsG0180001795.01.T01:CDS 60.0%
CGCTCAAGCTCGTGACCATC+AGG - Chr1:27139185-27139204 None:intergenic 60.0%
GACGAAGAAGTAGCTCCGCG+TGG - Chr1:27140048-27140067 None:intergenic 60.0%
GCTTGGAGGCTAGGTAGGAC+TGG + Chr1:27138957-27138976 MsG0180001795.01.T01:CDS 60.0%
GTGCTCCTCCTCAAGGTCTC+AGG - Chr1:27137067-27137086 None:intergenic 60.0%
TGGTCACGAGCTTGAGCGGT+TGG + Chr1:27139187-27139206 MsG0180001795.01.T01:CDS 60.0%
TTGCCACATGTTCCCTCCGC+AGG + Chr1:27136856-27136875 MsG0180001795.01.T01:five_prime_UTR 60.0%
! CAAGAGCGTGGTCTCCAGGT+TGG + Chr1:27138589-27138608 MsG0180001795.01.T01:CDS 60.0%
! GAGGAGCACACTCTCAGGCA+AGG + Chr1:27137078-27137097 MsG0180001795.01.T01:five_prime_UTR 60.0%
!! ATCCGGGTAGAGTGTCGAGG+TGG + Chr1:27137335-27137354 MsG0180001795.01.T01:CDS 60.0%
!! GAGAGCTTTGGGCGACTGGA+TGG + Chr1:27139006-27139025 MsG0180001795.01.T01:CDS 60.0%
CCACATGTTCCCTCCGCAGG+AGG + Chr1:27136859-27136878 MsG0180001795.01.T01:five_prime_UTR 65.0%
CCTCCTGCGGAGGGAACATG+TGG - Chr1:27136862-27136881 None:intergenic 65.0%
!! CGGGTAGAGTGTCGAGGTGG+TGG + Chr1:27137338-27137357 MsG0180001795.01.T01:CDS 65.0%
Chromosome Type Strat End Strand Name
Chr1 gene 27136416 27140901 27136416 ID=MsG0180001795.01;Name=MsG0180001795.01
Chr1 mRNA 27136416 27140901 27136416 ID=MsG0180001795.01.T01;Parent=MsG0180001795.01;Name=MsG0180001795.01.T01;_AED=0.16;_eAED=0.16;_QI=744|1|1|1|0.75|0.6|5|557|615
Chr1 exon 27140786 27140901 27140786 ID=MsG0180001795.01.T01:exon:34938;Parent=MsG0180001795.01.T01
Chr1 exon 27139724 27140734 27139724 ID=MsG0180001795.01.T01:exon:34937;Parent=MsG0180001795.01.T01
Chr1 exon 27138514 27139220 27138514 ID=MsG0180001795.01.T01:exon:34936;Parent=MsG0180001795.01.T01
Chr1 exon 27138140 27138361 27138140 ID=MsG0180001795.01.T01:exon:34935;Parent=MsG0180001795.01.T01
Chr1 exon 27136416 27137508 27136416 ID=MsG0180001795.01.T01:exon:34934;Parent=MsG0180001795.01.T01
Chr1 five_prime_UTR 27136416 27137159 27136416 ID=MsG0180001795.01.T01:five_prime_utr;Parent=MsG0180001795.01.T01
Chr1 CDS 27137160 27137508 27137160 ID=MsG0180001795.01.T01:cds;Parent=MsG0180001795.01.T01
Chr1 CDS 27138140 27138361 27138140 ID=MsG0180001795.01.T01:cds;Parent=MsG0180001795.01.T01
Chr1 CDS 27138514 27139220 27138514 ID=MsG0180001795.01.T01:cds;Parent=MsG0180001795.01.T01
Chr1 CDS 27139724 27140293 27139724 ID=MsG0180001795.01.T01:cds;Parent=MsG0180001795.01.T01
Chr1 three_prime_UTR 27140294 27140734 27140294 ID=MsG0180001795.01.T01:three_prime_utr;Parent=MsG0180001795.01.T01
Chr1 three_prime_UTR 27140786 27140901 27140786 ID=MsG0180001795.01.T01:three_prime_utr;Parent=MsG0180001795.01.T01
Gene Sequence

>MsG0180001795.01.T01

ATGAGTGAAGGTTTTGGTTGTGGAATGAAAAATCTGAAAATGGGTATGAATAGGACCATAGTTTGGTTTAGGAGGGATCTAAGAATTGAGGACAATCCTGCATTAGCTGCTGCTGCAAGGGATGGTTCTGTTTTTCCTGTCTTTATTTGGTGTCCCAAAGAGGAAGGACAGTTTTATCCGGGTAGAGTGTCGAGGTGGTGGCTGAAGCAGTCTCTTTATCACTTGGATCAATCACTGAAATCTCTTGGAGCTGGACTTGTGATGATCAAAACTGATAGTACTCTTAAAGCACTTCTGGAATGTGTAAATGTTGTTCAAGCTGAAAAAGTTGTGTTTAATCATCTTTATGATCCAGTTTCACTTGTTCGTGATCATAACATCAAAGAAAAACTAGCGGAACTCGGTATTTCTGTGCAAAGCTACAACGGAGACTTGCTGCATGAACCGTGGAATATATATAATGAAAGTGGACATGCATTTACAACCTTTGATCCTTTTTGGAATAGATGCTTGCAAATGCAAATGAAAACTTATTCACCCATTCCTCCTTGTCAATTAATTCTAGCTCAAGGTAAAGTTGAGAAACATTCAATTGAGCAACTAAGTCTTGAAGATGAGTTAGAAACATCAAGCAATGCATTATTAGCAAGAGCGTGGTCTCCAGGTTGGAGCAAAAGTGACAAGGCATTGACCGAATTTGTCGAAAATCACCTAATTCACTACTCAAAAAATAGATTAAATCTTGGCGCTGACTCAACCTCACTCCTATCTCCATATATTCATTTTGGAGAATTGAGTGTGAGGAAAGTATTTCAGTTAGCACGAACGAAACAGATATTATGGAAAAACGAAGGAAACAACGTTGGTGAAGAGAGTGCAACACTTTTTCTCAGGGCCATTGGATTTAGAGAGTACTCGCGTTATCTTTGTTTTAGTTTTCCATTCACCGTCGAGACGCCATTGCTAGGGAACTTAAAATTTTTTCCTTGGAATACCGATCCTTCAAAATTTAAGGCTTGGAGGCTAGGTAGGACTGGATATCCATTAGTTGATGCAGGAATGAGAGAGCTTTGGGCGACTGGATGGATACACAACAAAATGCGAGTTATAGTTTCTAGTTTTGCAGTGAAAATGTTGCTTATACCATGGAAATGGGGAATGAAATATTTTTGGGATACACTATTAGATGCTGACCTTGAAAGTGATATCTTGGGTTGGCAGTATATCTCCGGGAGCTTACCTGATGGTCACGAGCTTGAGCGGTTGGATGATCCAGAGATTCAAGGGACGAAATACGATCCAGAAGGCGAATACGTTCGACAATGGCTACCTGAATTGGCAAGAATTCCAACTGAGTGGATCCATCATCCATGGAATGCACCACATACTGTGTTAAGAGCATCAGGTGTAGAGTTGGGTCAAAACTATCCAAAACCAATCATTGAAATAGATTTGGCTAGAGAACAATTGACTCAAGCGATATTCAAGATGTGGGAAGATGAGGCAGCTTCAAAAGCTTCTACCTCAGAAAATAAACATGAAGTTGTTGATGACAGTGAAAATTTGTCAATTCCAAAAGTTTTCTTGAAGGACAAGGCTCCACGCGGAGCTACTTCTTCGTCAAATGATCAAAAGGTGCCAATACTTCAGAATCCAAATATTGATGATCCTCCTAATAGGAAAAAACAAAAATGTATCGATAAAGTGGATCGAGAACCGGATAATATGAGTAACCTTATCAAGCGTACTGACACCGGAGTGTCATGTATTGATCAAGAAGTGTGCTCAACAGCTGAATCTTCATCCAAGAGACAGAGTTCAAGCACTTGTTCATTTTATGTACCATAA
Protein sequence

>MsG0180001795.01.T01

MSEGFGCGMKNLKMGMNRTIVWFRRDLRIEDNPALAAAARDGSVFPVFIWCPKEEGQFYPGRVSRWWLKQSLYHLDQSLKSLGAGLVMIKTDSTLKALLECVNVVQAEKVVFNHLYDPVSLVRDHNIKEKLAELGISVQSYNGDLLHEPWNIYNESGHAFTTFDPFWNRCLQMQMKTYSPIPPCQLILAQGKVEKHSIEQLSLEDELETSSNALLARAWSPGWSKSDKALTEFVENHLIHYSKNRLNLGADSTSLLSPYIHFGELSVRKVFQLARTKQILWKNEGNNVGEESATLFLRAIGFREYSRYLCFSFPFTVETPLLGNLKFFPWNTDPSKFKAWRLGRTGYPLVDAGMRELWATGWIHNKMRVIVSSFAVKMLLIPWKWGMKYFWDTLLDADLESDILGWQYISGSLPDGHELERLDDPEIQGTKYDPEGEYVRQWLPELARIPTEWIHHPWNAPHTVLRASGVELGQNYPKPIIEIDLAREQLTQAIFKMWEDEAASKASTSENKHEVVDDSENLSIPKVFLKDKAPRGATSSSNDQKVPILQNPNIDDPPNRKKQKCIDKVDREPDNMSNLIKRTDTGVSCIDQEVCSTAESSSKRQSSSTCSFYVP*