AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180002458.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180002458.01.T01 MTR_1g050750 87.843 255 6 1 58 287 303 557 1.71e-160 458
MsG0180002458.01.T01 MTR_7g089770 56.693 254 85 1 59 287 370 623 1.51e-97 299
MsG0180002458.01.T01 MTR_1g112810 47.843 255 42 5 58 287 18 206 1.47e-60 191
MsG0180002458.01.T01 MTR_2g096880 29.530 149 102 2 60 205 259 407 2.69e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180002458.01.T01 AT1G80270 52.344 256 96 2 58 287 341 596 1.73e-88 275
MsG0180002458.01.T01 AT1G80270 52.344 256 96 2 58 287 341 596 1.73e-88 275
MsG0180002458.01.T01 AT1G80270 52.344 256 96 2 58 287 341 596 1.73e-88 275
MsG0180002458.01.T01 AT1G80270 52.344 256 96 2 58 287 341 596 1.73e-88 275
MsG0180002458.01.T01 AT1G80270 52.344 256 96 2 58 287 341 596 1.73e-88 275
MsG0180002458.01.T01 AT1G15480 46.048 291 130 3 23 287 305 594 9.35e-87 271
MsG0180002458.01.T01 AT3G15590 46.642 268 117 2 46 287 342 609 1.62e-72 234
MsG0180002458.01.T01 AT3G15590 46.642 268 117 2 46 287 342 609 1.62e-72 234
MsG0180002458.01.T01 AT5G27460 27.426 237 133 6 60 261 259 491 4.33e-12 66.6

Find 78 sgRNAs with CRISPR-Local

Find 385 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTTCGCCTTTATGCAATTC+TGG 0.131994 1:-38640013 MsG0180002458.01.T01:CDS
TTGAGATGATGTCAAATAAA+TGG 0.223409 1:-38639867 MsG0180002458.01.T01:CDS
CATCGGCATCATCCTCATTT+TGG 0.235164 1:+38644202 None:intergenic
CTGATGAAGTGGAGAGAATT+TGG 0.254386 1:-38639984 MsG0180002458.01.T01:CDS
CCAAAGCTTTGTTGGGGAAT+AGG 0.275744 1:+38639432 None:intergenic
GCCAGGCATTATGCCGCAGC+TGG 0.301114 1:-38640117 MsG0180002458.01.T01:intron
CAGGAGTGCTTCGTAATTCC+TGG 0.308690 1:+38639834 None:intergenic
ACGGATCAAGTTGCGCCAAC+TGG 0.333303 1:+38639405 None:intergenic
CCTTGCTGCAATTGAAGCTT+GGG 0.357826 1:-38639926 MsG0180002458.01.T01:CDS
CACTCCTGAAAATTTATATA+AGG 0.364562 1:-38639819 MsG0180002458.01.T01:CDS
GCCTTGCTGCAATTGAAGCT+TGG 0.373021 1:-38639927 MsG0180002458.01.T01:CDS
CTGGGCAGCCAAAGCTTTGT+TGG 0.373233 1:+38639424 None:intergenic
CTTCGCCTTTATGCAATTCT+GGG 0.384775 1:-38640012 MsG0180002458.01.T01:CDS
TGGCGCAACTTGATCCGTTT+AGG 0.388967 1:-38639400 MsG0180002458.01.T01:CDS
GATCCCATATGCCGGTAGTT+TGG 0.391981 1:+38639478 None:intergenic
TGGGCAGCCAAAGCTTTGTT+GGG 0.398974 1:+38639425 None:intergenic
AACTACCGGCATATGGGATC+AGG 0.402981 1:-38639475 MsG0180002458.01.T01:CDS
AATGCCAAACTACCGGCATA+TGG 0.407390 1:-38639482 MsG0180002458.01.T01:CDS
CAATCAAGCAAATCAGAAAC+TGG 0.410076 1:+38639371 None:intergenic
GCATAAAGGCGAAGCAAAGT+TGG 0.422948 1:+38640021 None:intergenic
GGAGATAGTGGATGCACAAT+AGG 0.423312 1:-38639754 MsG0180002458.01.T01:CDS
CAAAGCTTTGGCTGCCCAGT+TGG 0.424772 1:-38639420 MsG0180002458.01.T01:CDS
CCTATTCCCCAACAAAGCTT+TGG 0.442635 1:-38639432 MsG0180002458.01.T01:CDS
GTTTCTGATTTGCTTGATTG+AGG 0.445276 1:-38639368 None:intergenic
GTGTCTCTTTATGTTCAAGC+AGG 0.447381 1:-38639709 MsG0180002458.01.T01:CDS
CCTTTATGCAATTCTGGGTA+GGG 0.456352 1:-38640007 MsG0180002458.01.T01:CDS
AAAACTTGAAAGAGAATATG+TGG 0.460609 1:-38640050 MsG0180002458.01.T01:CDS
CCCTACCCAGAATTGCATAA+AGG 0.464815 1:+38640007 None:intergenic
GCACAATAGGTCCAACAACC+TGG 0.470333 1:-38639741 MsG0180002458.01.T01:CDS
TGAGTCAAAGGCACGGGTTG+AGG 0.476716 1:-38639953 MsG0180002458.01.T01:CDS
AAGGATCTTATTAAGACAAT+GGG 0.483656 1:-38639775 MsG0180002458.01.T01:CDS
GCCTTTATGCAATTCTGGGT+AGG 0.486972 1:-38640008 MsG0180002458.01.T01:CDS
CATAAAGGCGAAGCAAAGTT+GGG 0.488820 1:+38640022 None:intergenic
CCAGGCATTATGCCGCAGCT+GGG 0.492421 1:-38640116 MsG0180002458.01.T01:intron
TTGGAAGGTTTGTGAGTCAA+AGG 0.500538 1:-38639965 MsG0180002458.01.T01:CDS
ATTAAGACAATGGGAGATAG+TGG 0.504532 1:-38639766 MsG0180002458.01.T01:CDS
TTGATTCTGCTCTCGACAAG+TGG 0.505632 1:-38643987 MsG0180002458.01.T01:CDS
ATGCCAAACTACCGGCATAT+GGG 0.508424 1:-38639481 MsG0180002458.01.T01:CDS
CGGATCAAGTTGCGCCAACT+GGG 0.512477 1:+38639406 None:intergenic
ACGGCTATCTCGTCTGCATC+CGG 0.519389 1:+38644140 None:intergenic
GGAGACGTCAGAACTATTCA+AGG 0.520856 1:-38644037 MsG0180002458.01.T01:CDS
AAGAGACACAAGTGCATCCC+AGG 0.520884 1:+38639723 None:intergenic
CATAAGCCTGTGCTAGAGCA+TGG 0.527160 1:+38639507 None:intergenic
CGGCATATGGGATCAGGGAG+AGG 0.529325 1:-38639469 MsG0180002458.01.T01:CDS
TAAGATGCTAAACAAGGGTA+AGG 0.531142 1:-38639794 MsG0180002458.01.T01:CDS
TCCATTCCATGCTCTAGCAC+AGG 0.537456 1:-38639513 MsG0180002458.01.T01:CDS
CTCTCGACAAGTGGGTTGAA+AGG 0.538093 1:-38643978 MsG0180002458.01.T01:intron
ATAAATGGAAACTTACTGCC+AGG 0.540928 1:-38639852 MsG0180002458.01.T01:CDS
CTCCATGTCATCATGATCAT+CGG 0.548454 1:+38644185 None:intergenic
GCTATATTGAAGGAGATTGA+AGG 0.548918 1:-38640075 MsG0180002458.01.T01:CDS
TAAGGATCTTATTAAGACAA+TGG 0.550207 1:-38639776 MsG0180002458.01.T01:CDS
TCTGGGTAGGGCTGATGAAG+TGG 0.551487 1:-38639995 MsG0180002458.01.T01:CDS
TGAAGATCGATTGACTGAGC+CGG 0.560091 1:-38644159 MsG0180002458.01.T01:CDS
TGAAGTGGAGAGAATTTGGA+AGG 0.561253 1:-38639980 MsG0180002458.01.T01:CDS
TCAAGCAGGGGAAGTCGAAA+AGG 0.563985 1:-38639695 MsG0180002458.01.T01:CDS
CTCTCCCTGATCCCATATGC+CGG 0.566853 1:+38639470 None:intergenic
GAAGAAAATTGAAGAAGCAG+AGG 0.567623 1:-38639896 MsG0180002458.01.T01:CDS
TTATGAAAATGCCAAACTAC+CGG 0.569392 1:-38639489 MsG0180002458.01.T01:CDS
ACAAGTGCATCCCAGGTTGT+TGG 0.573061 1:+38639730 None:intergenic
GTCAGAACTATTCAAGGCGA+TGG 0.573580 1:-38644031 MsG0180002458.01.T01:CDS
GTCATAAAAGTAGTAAACAT+TGG 0.573772 1:+38639628 None:intergenic
TGTCTCTTTATGTTCAAGCA+GGG 0.574299 1:-38639708 MsG0180002458.01.T01:CDS
GGTTTGTGAGTCAAAGGCAC+GGG 0.579121 1:-38639959 MsG0180002458.01.T01:CDS
TGATTCTGCTCTCGACAAGT+GGG 0.581364 1:-38643986 MsG0180002458.01.T01:CDS
GCCTGTGCTAGAGCATGGAA+TGG 0.581883 1:+38639512 None:intergenic
TGATGCCAGTAGCCAAAATG+AGG 0.589963 1:-38644214 MsG0180002458.01.T01:CDS
AAGGCATAAGATGCTAAACA+AGG 0.601987 1:-38639800 MsG0180002458.01.T01:CDS
CACAATAGGTCCAACAACCT+GGG 0.602444 1:-38639740 MsG0180002458.01.T01:CDS
CCCAAGCTTCAATTGCAGCA+AGG 0.612921 1:+38639926 None:intergenic
ACTACCGGCATATGGGATCA+GGG 0.615630 1:-38639474 MsG0180002458.01.T01:CDS
CTTGCTGCAATTGAAGCTTG+GGG 0.618565 1:-38639925 MsG0180002458.01.T01:CDS
AAACTTGAAAGAGAATATGT+GGG 0.621557 1:-38640049 MsG0180002458.01.T01:CDS
CTTGTCGAGAGCAGAATCAA+CGG 0.622909 1:+38643990 None:intergenic
AGGTTTGTGAGTCAAAGGCA+CGG 0.624658 1:-38639960 MsG0180002458.01.T01:CDS
GTCTCTTTATGTTCAAGCAG+GGG 0.638136 1:-38639707 MsG0180002458.01.T01:CDS
GGGCAGCCAAAGCTTTGTTG+GGG 0.644851 1:+38639426 None:intergenic
AGGCATAAGATGCTAAACAA+GGG 0.655332 1:-38639799 MsG0180002458.01.T01:CDS
TGCCGATGATCATGATGACA+TGG 0.661998 1:-38644187 MsG0180002458.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAATTAAACATCATATTA+TGG + Chr1:38642932-38642951 None:intergenic 10.0%
!! AATCTTAAATTGTATAAAAT+TGG + Chr1:38639736-38639755 None:intergenic 10.0%
!! GTTATTATATATCATAATTA+CGG + Chr1:38640414-38640433 None:intergenic 10.0%
!! TAAAAAATAATATTGTTTGA+TGG + Chr1:38641040-38641059 None:intergenic 10.0%
!! TTATTATATATCATAATTAC+GGG + Chr1:38640413-38640432 None:intergenic 10.0%
!!! AACTATATTTTTTTTTTGAT+CGG - Chr1:38641201-38641220 MsG0180002458.01.T01:intron 10.0%
!! AAATCTCTCATAAATTATAA+TGG + Chr1:38640554-38640573 None:intergenic 15.0%
!! ATAATCAAACAATATAAGAT+GGG + Chr1:38639824-38639843 None:intergenic 15.0%
!! CATAACATTATTTCAAAATA+TGG - Chr1:38641487-38641506 MsG0180002458.01.T01:intron 15.0%
!!! ACTAATATAATTTGTCTATT+TGG - Chr1:38640432-38640451 MsG0180002458.01.T01:intron 15.0%
!!! TTACAATTTTTTAAATACGT+GGG + Chr1:38641159-38641178 None:intergenic 15.0%
!!! TTTTAAACTTAATATGTGAT+AGG - Chr1:38640593-38640612 MsG0180002458.01.T01:intron 15.0%
!! AAAAACCTTAACAATCTAAA+AGG - Chr1:38640133-38640152 MsG0180002458.01.T01:intron 20.0%
!! AAAACCTTAACAATCTAAAA+GGG - Chr1:38640134-38640153 MsG0180002458.01.T01:intron 20.0%
!! ATGTTACAATATAGAAAAGA+TGG - Chr1:38639792-38639811 MsG0180002458.01.T01:CDS 20.0%
!! ATTATCAAATGACTTCATAA+TGG + Chr1:38640619-38640638 None:intergenic 20.0%
!! ATTCATCATTAGTGAAAATT+AGG - Chr1:38640800-38640819 MsG0180002458.01.T01:intron 20.0%
!! CATAATCAAACAATATAAGA+TGG + Chr1:38639825-38639844 None:intergenic 20.0%
!! TACTTCATTAAAGAAAACAT+GGG + Chr1:38641697-38641716 None:intergenic 20.0%
!! TTACTTCATTAAAGAAAACA+TGG + Chr1:38641698-38641717 None:intergenic 20.0%
!!! AAAAGAGTTCTTTCTAAAAA+AGG + Chr1:38640303-38640322 None:intergenic 20.0%
!!! AAACTTTGATAATGGAAAAA+TGG + Chr1:38642655-38642674 None:intergenic 20.0%
!!! AATATAATTTGTCTATTTGG+TGG - Chr1:38640435-38640454 MsG0180002458.01.T01:intron 20.0%
!!! AATTTTCACTAATGATGAAT+TGG + Chr1:38640800-38640819 None:intergenic 20.0%
!!! AGTTATCTTTTTTCTTTCTT+TGG - Chr1:38642960-38642979 MsG0180002458.01.T01:intron 20.0%
!!! ATATAATTTGTCTATTTGGT+GGG - Chr1:38640436-38640455 MsG0180002458.01.T01:intron 20.0%
!!! ATTTTGTAAGTATAAGAAGA+AGG + Chr1:38643337-38643356 None:intergenic 20.0%
!!! CTTACAATTTTTTAAATACG+TGG + Chr1:38641160-38641179 None:intergenic 20.0%
!!! TACTACTTTTATGACTATTA+TGG - Chr1:38643962-38643981 MsG0180002458.01.T01:intron 20.0%
!!! TATGCCTTATATAAATTTTC+AGG + Chr1:38643770-38643789 None:intergenic 20.0%
!!! TGAAGTGTCAATAAAATAAT+TGG + Chr1:38642712-38642731 None:intergenic 20.0%
!!! TGATTAGTCTCAATTTTATA+TGG - Chr1:38640870-38640889 MsG0180002458.01.T01:intron 20.0%
!!! TTTTCCATTATCAAAGTTTT+GGG - Chr1:38642656-38642675 MsG0180002458.01.T01:intron 20.0%
!!! TTTTTCCATTATCAAAGTTT+TGG - Chr1:38642655-38642674 MsG0180002458.01.T01:intron 20.0%
!!! TTTTTTTTTTTACCACAGTT+GGG - Chr1:38640847-38640866 MsG0180002458.01.T01:intron 20.0%
!!! TTTTTTTTTTTTACCACAGT+TGG - Chr1:38640846-38640865 MsG0180002458.01.T01:intron 20.0%
! AAAAACTGAAGCTATATTGA+AGG - Chr1:38643497-38643516 MsG0180002458.01.T01:intron 25.0%
! AAAACTTGAAAGAGAATATG+TGG - Chr1:38643532-38643551 MsG0180002458.01.T01:intron 25.0%
! AAAAGATATACCAGTTTCTT+GGG - Chr1:38640912-38640931 MsG0180002458.01.T01:intron 25.0%
! AAACTTGAAAGAGAATATGT+GGG - Chr1:38643533-38643552 MsG0180002458.01.T01:intron 25.0%
! AACAATAGTTCAATTGTTAG+AGG - Chr1:38639890-38639909 MsG0180002458.01.T01:CDS 25.0%
! AAGGATCTTATTAAGACAAT+GGG - Chr1:38643807-38643826 MsG0180002458.01.T01:intron 25.0%
! AATAAGATAATAATACACCC+AGG + Chr1:38641098-38641117 None:intergenic 25.0%
! AGATATAAACACTAACCATT+AGG + Chr1:38640710-38640729 None:intergenic 25.0%
! ATAACTATAGTTAGACATTC+AGG - Chr1:38642598-38642617 MsG0180002458.01.T01:intron 25.0%
! ATCACAATTCACACTTATTT+AGG + Chr1:38640974-38640993 None:intergenic 25.0%
! CACTCCTGAAAATTTATATA+AGG - Chr1:38643763-38643782 MsG0180002458.01.T01:intron 25.0%
! GTCATAAAAGTAGTAAACAT+TGG + Chr1:38643957-38643976 None:intergenic 25.0%
! TAACTATAGTTAGACATTCA+GGG - Chr1:38642599-38642618 MsG0180002458.01.T01:intron 25.0%
! TAAGGATCTTATTAAGACAA+TGG - Chr1:38643806-38643825 MsG0180002458.01.T01:intron 25.0%
! TAGTTGTACATATGTAGTAT+AGG + Chr1:38641186-38641205 None:intergenic 25.0%
! TATACCAAACAATCTTAAGT+GGG - Chr1:38640500-38640519 MsG0180002458.01.T01:intron 25.0%
! TATTGTTTGATTATGTGTGA+AGG - Chr1:38639830-38639849 MsG0180002458.01.T01:CDS 25.0%
! TGACAAAACACTATAATAAC+TGG + Chr1:38641799-38641818 None:intergenic 25.0%
! TTGAGATGATGTCAAATAAA+TGG - Chr1:38643715-38643734 MsG0180002458.01.T01:intron 25.0%
!! AAATGTAATGTGACATTTTG+TGG - Chr1:38642684-38642703 MsG0180002458.01.T01:intron 25.0%
!! AATGTAATGTGACATTTTGT+GGG - Chr1:38642685-38642704 MsG0180002458.01.T01:intron 25.0%
!! ACGTAAAATTCTTCTAAAGA+AGG + Chr1:38642858-38642877 None:intergenic 25.0%
!!! ATCTTTTTTCTTTCTTTGGT+TGG - Chr1:38642964-38642983 MsG0180002458.01.T01:intron 25.0%
!!! CAATATAGCTTCAGTTTTTT+CGG + Chr1:38643496-38643515 None:intergenic 25.0%
!!! GTGTTATTGTATTTTGATGA+TGG - Chr1:38640671-38640690 MsG0180002458.01.T01:intron 25.0%
AAAATCACCAGTAAACAAGT+GGG + Chr1:38642121-38642140 None:intergenic 30.0%
AAAATGGAGTGGGTAAAAAA+TGG + Chr1:38642639-38642658 None:intergenic 30.0%
AAAGATATACCAGTTTCTTG+GGG - Chr1:38640913-38640932 MsG0180002458.01.T01:intron 30.0%
AAATGCTGCATAAAACAGTA+TGG + Chr1:38642449-38642468 None:intergenic 30.0%
AATGCTGCATAAAACAGTAT+GGG + Chr1:38642448-38642467 None:intergenic 30.0%
AATTATAATGGTTTGACCCA+TGG + Chr1:38640542-38640561 None:intergenic 30.0%
ACCCTTCAAAACTATAGTAA+TGG - Chr1:38642734-38642753 MsG0180002458.01.T01:intron 30.0%
AGGAAACATTCAACAAAATG+AGG - Chr1:38643195-38643214 MsG0180002458.01.T01:intron 30.0%
ATAAACACTAACCATTAGGT+AGG + Chr1:38640706-38640725 None:intergenic 30.0%
ATACATTGGATATACAACCT+GGG - Chr1:38641078-38641097 MsG0180002458.01.T01:intron 30.0%
ATGATGCTTTGTATAATGCA+GGG + Chr1:38641930-38641949 None:intergenic 30.0%
CCCTTCAAAACTATAGTAAT+GGG - Chr1:38642735-38642754 MsG0180002458.01.T01:intron 30.0%
CCTTCAAAACTATAGTAATG+GGG - Chr1:38642736-38642755 MsG0180002458.01.T01:intron 30.0%
CTATACCAAACAATCTTAAG+TGG - Chr1:38640499-38640518 MsG0180002458.01.T01:intron 30.0%
GAAAAGATATACCAGTTTCT+TGG - Chr1:38640911-38640930 MsG0180002458.01.T01:intron 30.0%
GACAAAAATCACTTTCTTCA+AGG - Chr1:38639524-38639543 MsG0180002458.01.T01:intron 30.0%
GAGTATGAAAAGAAGAAGTT+TGG + Chr1:38642097-38642116 None:intergenic 30.0%
GCCAGAAAATTAACCATAAT+CGG + Chr1:38642198-38642217 None:intergenic 30.0%
GGAAACATTCAACAAAATGA+GGG - Chr1:38643196-38643215 MsG0180002458.01.T01:intron 30.0%
TAAACACTAACCATTAGGTA+GGG + Chr1:38640705-38640724 None:intergenic 30.0%
TACTCCCAAAACTTTGATAA+TGG + Chr1:38642663-38642682 None:intergenic 30.0%
TAGAGTTTCTTCTTGAAAAG+AGG + Chr1:38640194-38640213 None:intergenic 30.0%
TAGGAAGAAAAAGAGTAAAG+TGG + Chr1:38642017-38642036 None:intergenic 30.0%
TATTCATGACTTTGCTTTAG+AGG + Chr1:38641017-38641036 None:intergenic 30.0%
TCTGGAAAATTTGAGGAAAA+CGG - Chr1:38643172-38643191 MsG0180002458.01.T01:intron 30.0%
TGAAAGGTAAAGAATTAAGC+AGG - Chr1:38639620-38639639 MsG0180002458.01.T01:CDS 30.0%
TGAAATAATGTTATGCAAGC+TGG + Chr1:38641482-38641501 None:intergenic 30.0%
TTATGAAAATGCCAAACTAC+CGG - Chr1:38644093-38644112 MsG0180002458.01.T01:intron 30.0%
TTCTTCTTGAAAAGAGGAAA+GGG + Chr1:38640188-38640207 None:intergenic 30.0%
TTGGCTGAAAAGAAAATACT+GGG + Chr1:38642151-38642170 None:intergenic 30.0%
TTGTACATATGTAGTATAGG+AGG + Chr1:38641183-38641202 None:intergenic 30.0%
TTTATCTGCAAAAAGCTCAT+TGG + Chr1:38641584-38641603 None:intergenic 30.0%
TTTCTTCTTGAAAAGAGGAA+AGG + Chr1:38640189-38640208 None:intergenic 30.0%
! AATTCTCCTCTGAAAGAATT+TGG + Chr1:38643119-38643138 None:intergenic 30.0%
! AGAACCCTTTTAGATTGTTA+AGG + Chr1:38640141-38640160 None:intergenic 30.0%
! TGCTTCTTCGAAGTTTTTAA+AGG + Chr1:38640221-38640240 None:intergenic 30.0%
!! TATCTTGTTTGTTTCTACGA+AGG + Chr1:38640947-38640966 None:intergenic 30.0%
!! TGATAATGGAAAAATGGAGT+GGG + Chr1:38642649-38642668 None:intergenic 30.0%
!! TTGATAATGGAAAAATGGAG+TGG + Chr1:38642650-38642669 None:intergenic 30.0%
!! TTTTACCTTGTTTATGCTTC+TGG - Chr1:38642904-38642923 MsG0180002458.01.T01:intron 30.0%
!!! AGCAGAGAATGAGTTTTTTT+TGG + Chr1:38642287-38642306 None:intergenic 30.0%
!!! CCCATTACTATAGTTTTGAA+GGG + Chr1:38642738-38642757 None:intergenic 30.0%
AAGGCATAAGATGCTAAACA+AGG - Chr1:38643782-38643801 MsG0180002458.01.T01:intron 35.0%
AAGGCGTAAAATGTATGGAA+GGG - Chr1:38639675-38639694 MsG0180002458.01.T01:CDS 35.0%
AATGTTATGCAAGCTGGAAA+TGG + Chr1:38641476-38641495 None:intergenic 35.0%
AATTAAGCAGGCAAGAGATT+GGG - Chr1:38639632-38639651 MsG0180002458.01.T01:CDS 35.0%
AATTCAGCAAGCTCATAATC+TGG + Chr1:38641620-38641639 None:intergenic 35.0%
ACATTACCTGTGATGCTTTA+GGG - Chr1:38641900-38641919 MsG0180002458.01.T01:intron 35.0%
ACATTCATATTAGACGAGAG+AGG + Chr1:38642348-38642367 None:intergenic 35.0%
ACCCATATCCTTTGGTATAT+TGG - Chr1:38642512-38642531 MsG0180002458.01.T01:intron 35.0%
ACTATGTATTGTGAGTTGTG+AGG + Chr1:38641358-38641377 None:intergenic 35.0%
AGACATTCTTACCAAAGGAT+TGG + Chr1:38641518-38641537 None:intergenic 35.0%
AGATCCCACTTAAGATTGTT+TGG + Chr1:38640507-38640526 None:intergenic 35.0%
AGGCATAAGATGCTAAACAA+GGG - Chr1:38643783-38643802 MsG0180002458.01.T01:intron 35.0%
ATAAATGGAAACTTACTGCC+AGG - Chr1:38643730-38643749 MsG0180002458.01.T01:intron 35.0%
ATCTCATGTTTGACAACCAT+GGG - Chr1:38640523-38640542 MsG0180002458.01.T01:intron 35.0%
ATGTTATGCAAGCTGGAAAT+GGG + Chr1:38641475-38641494 None:intergenic 35.0%
ATTAAGACAATGGGAGATAG+TGG - Chr1:38643816-38643835 MsG0180002458.01.T01:intron 35.0%
ATTCAGCAAGCTCATAATCT+GGG + Chr1:38641619-38641638 None:intergenic 35.0%
CAATCAAGCAAATCAGAAAC+TGG + Chr1:38644214-38644233 None:intergenic 35.0%
CAGCAACTTAATGAGGTTTA+GGG + Chr1:38641291-38641310 None:intergenic 35.0%
CAGGTTGTATATCCAATGTA+TGG + Chr1:38641079-38641098 None:intergenic 35.0%
CATACATTGGATATACAACC+TGG - Chr1:38641077-38641096 MsG0180002458.01.T01:intron 35.0%
CATGATGCTTTGTATAATGC+AGG + Chr1:38641931-38641950 None:intergenic 35.0%
CATGTTCCAAATTCTTTCAG+AGG - Chr1:38643110-38643129 MsG0180002458.01.T01:intron 35.0%
CTCGTGAGATCAAAATTTGT+TGG + Chr1:38642424-38642443 None:intergenic 35.0%
GAAAATCACCAGTAAACAAG+TGG + Chr1:38642122-38642141 None:intergenic 35.0%
GAAAGTCAAACAAGTGAAGT+TGG + Chr1:38642170-38642189 None:intergenic 35.0%
GAAGAAAATTGAAGAAGCAG+AGG - Chr1:38643686-38643705 MsG0180002458.01.T01:intron 35.0%
GACATTCTTACCAAAGGATT+GGG + Chr1:38641517-38641536 None:intergenic 35.0%
GCCAATATACCAAAGGATAT+GGG + Chr1:38642516-38642535 None:intergenic 35.0%
GCCTGTCTAATGATATTGAT+GGG - Chr1:38643374-38643393 MsG0180002458.01.T01:intron 35.0%
GCTATATTGAAGGAGATTGA+AGG - Chr1:38643507-38643526 MsG0180002458.01.T01:intron 35.0%
GTTGGCTGAAAAGAAAATAC+TGG + Chr1:38642152-38642171 None:intergenic 35.0%
TAAGATGCTAAACAAGGGTA+AGG - Chr1:38643788-38643807 MsG0180002458.01.T01:intron 35.0%
TAAGTTGTACCCATATCCTT+TGG - Chr1:38642504-38642523 MsG0180002458.01.T01:intron 35.0%
TACATTACCTGTGATGCTTT+AGG - Chr1:38641899-38641918 MsG0180002458.01.T01:intron 35.0%
TAGAAATCTTCTCTGCGTTA+TGG + Chr1:38644013-38644032 None:intergenic 35.0%
TCAGCAACTTAATGAGGTTT+AGG + Chr1:38641292-38641311 None:intergenic 35.0%
TCATTAAAGAAAACATGGGC+TGG + Chr1:38641693-38641712 None:intergenic 35.0%
TCCCATCAATATCATTAGAC+AGG + Chr1:38643378-38643397 None:intergenic 35.0%
TCTTCTTGAAAAGAGGAAAG+GGG + Chr1:38640187-38640206 None:intergenic 35.0%
TGAAATAACCTTGACAACCA+TGG - Chr1:38641410-38641429 MsG0180002458.01.T01:intron 35.0%
TGGCTGAAAAGAAAATACTG+GGG + Chr1:38642150-38642169 None:intergenic 35.0%
TGTCTCTTTATGTTCAAGCA+GGG - Chr1:38643874-38643893 MsG0180002458.01.T01:intron 35.0%
TGTTAGAGGTAGAGAGAATT+AGG - Chr1:38639904-38639923 MsG0180002458.01.T01:CDS 35.0%
TTATCAAAGCACAGCTTCAT+AGG - Chr1:38641656-38641675 MsG0180002458.01.T01:intron 35.0%
TTCAACAAAATGAGGGAGTT+AGG - Chr1:38643203-38643222 MsG0180002458.01.T01:intron 35.0%
TTCATAGAAGTTGAAGAACG+TGG + Chr1:38641394-38641413 None:intergenic 35.0%
! ACAGTTTGGAGAAAAAGTGT+GGG + Chr1:38639965-38639984 None:intergenic 35.0%
! ACGTGTTCTTATGATGGAAA+AGG - Chr1:38643300-38643319 MsG0180002458.01.T01:intron 35.0%
! ATAGTAATGGGGAGGAAAAA+TGG - Chr1:38642747-38642766 MsG0180002458.01.T01:intron 35.0%
! GAAACTGGAGTTTTCCTAAA+CGG + Chr1:38644199-38644218 None:intergenic 35.0%
! GAATGGTTCGTTTCCTTTTT+GGG - Chr1:38642801-38642820 MsG0180002458.01.T01:intron 35.0%
! GATTCATGCATTTTCTCTGT+TGG - Chr1:38642254-38642273 MsG0180002458.01.T01:intron 35.0%
! GCCGATTATGGTTAATTTTC+TGG - Chr1:38642194-38642213 MsG0180002458.01.T01:intron 35.0%
! TCAAAACTATAGTAATGGGG+AGG - Chr1:38642739-38642758 MsG0180002458.01.T01:intron 35.0%
!! AAATGGGTTTTCCAGCTTTT+GGG + Chr1:38641459-38641478 None:intergenic 35.0%
!!! CCCCATTACTATAGTTTTGA+AGG + Chr1:38642739-38642758 None:intergenic 35.0%
!!! TCATGTGTGTTTTGATTGAG+TGG - Chr1:38641946-38641965 MsG0180002458.01.T01:intron 35.0%
!!! TGTTTTGATTGAGTGGTCAT+TGG - Chr1:38641953-38641972 MsG0180002458.01.T01:intron 35.0%
AAAAGAAAATACTGGGGCTC+AGG + Chr1:38642144-38642163 None:intergenic 40.0%
AGTCCTTAAGGAAGCTTCTA+CGG + Chr1:38639857-38639876 None:intergenic 40.0%
AGTGCAAGATTGTGATATCG+TGG - Chr1:38640034-38640053 MsG0180002458.01.T01:CDS 40.0%
AGTTGCTGAACATGCCAAAT+AGG - Chr1:38641303-38641322 MsG0180002458.01.T01:intron 40.0%
ATACTCTCCCACTTGTTTAC+TGG - Chr1:38642111-38642130 MsG0180002458.01.T01:intron 40.0%
ATAGAAGTTGAAGAACGTGG+AGG + Chr1:38641391-38641410 None:intergenic 40.0%
ATCTGCAAAAAGCTCATTGG+TGG + Chr1:38641581-38641600 None:intergenic 40.0%
ATGAGCCAATCGCACATAAT+TGG - Chr1:38640637-38640656 MsG0180002458.01.T01:intron 40.0%
CACAGTTTGGAGAAAAAGTG+TGG + Chr1:38639966-38639985 None:intergenic 40.0%
CACATAATTGGCAGAGCAAT+GGG - Chr1:38640649-38640668 MsG0180002458.01.T01:intron 40.0%
CATAAAGGCGAAGCAAAGTT+GGG + Chr1:38643563-38643582 None:intergenic 40.0%
CATTACCTGTGATGCTTTAG+GGG - Chr1:38641901-38641920 MsG0180002458.01.T01:intron 40.0%
CCTGCAATATATGCCCAAAA+AGG + Chr1:38642817-38642836 None:intergenic 40.0%
CCTTAAGGACTGTTCATCAA+AGG - Chr1:38639866-38639885 MsG0180002458.01.T01:CDS 40.0%
CCTTTATGCAATTCTGGGTA+GGG - Chr1:38643575-38643594 MsG0180002458.01.T01:intron 40.0%
CCTTTGATGAACAGTCCTTA+AGG + Chr1:38639869-38639888 None:intergenic 40.0%
CTCCATGTCATCATGATCAT+CGG + Chr1:38639400-38639419 None:intergenic 40.0%
CTGATGAAGTGGAGAGAATT+TGG - Chr1:38643598-38643617 MsG0180002458.01.T01:intron 40.0%
CTTCGCCTTTATGCAATTCT+GGG - Chr1:38643570-38643589 MsG0180002458.01.T01:intron 40.0%
CTTCTTGAAAAGAGGAAAGG+GGG + Chr1:38640186-38640205 None:intergenic 40.0%
CTTGCAGACATTCTTACCAA+AGG + Chr1:38641523-38641542 None:intergenic 40.0%
CTTTCTTTGGTTGGAACTGT+AGG - Chr1:38642973-38642992 MsG0180002458.01.T01:intron 40.0%
GAACATGCCAAATAGGTTCT+TGG - Chr1:38641310-38641329 MsG0180002458.01.T01:intron 40.0%
GAATTAAGCAGGCAAGAGAT+TGG - Chr1:38639631-38639650 MsG0180002458.01.T01:CDS 40.0%
GATCTCATGTTTGACAACCA+TGG - Chr1:38640522-38640541 MsG0180002458.01.T01:intron 40.0%
GATTTGATTGCCAAATTGCG+TGG - Chr1:38643060-38643079 MsG0180002458.01.T01:intron 40.0%
GCATGTTCAGCAACTTAATG+AGG + Chr1:38641298-38641317 None:intergenic 40.0%
GGAAAATTTGAGGAAAACGG+AGG - Chr1:38643175-38643194 MsG0180002458.01.T01:intron 40.0%
GGATATTTGACCCTACCTAA+TGG - Chr1:38640692-38640711 MsG0180002458.01.T01:intron 40.0%
GGCCAATATACCAAAGGATA+TGG + Chr1:38642517-38642536 None:intergenic 40.0%
GGCCTGTCTAATGATATTGA+TGG - Chr1:38643373-38643392 MsG0180002458.01.T01:intron 40.0%
GTCTCTTTATGTTCAAGCAG+GGG - Chr1:38643875-38643894 MsG0180002458.01.T01:intron 40.0%
GTGCAAGATTGTGATATCGT+GGG - Chr1:38640035-38640054 MsG0180002458.01.T01:CDS 40.0%
GTGTCTCTTTATGTTCAAGC+AGG - Chr1:38643873-38643892 MsG0180002458.01.T01:intron 40.0%
TAGCTGACGTGTTCTTATGA+TGG - Chr1:38643294-38643313 MsG0180002458.01.T01:intron 40.0%
TATGGAGCAGTATGCAAAGA+GGG - Chr1:38643980-38643999 MsG0180002458.01.T01:CDS 40.0%
TGAAGTGGAGAGAATTTGGA+AGG - Chr1:38643602-38643621 MsG0180002458.01.T01:intron 40.0%
TGGAAATAGAGTCACATCCA+TGG + Chr1:38641430-38641449 None:intergenic 40.0%
TGGGTACAACTTACAACACA+AGG + Chr1:38642497-38642516 None:intergenic 40.0%
TGGTAAGAATGTCTGCAAGT+TGG - Chr1:38641524-38641543 MsG0180002458.01.T01:intron 40.0%
TGTTGAGACAATGAAGACAG+AGG - Chr1:38643408-38643427 MsG0180002458.01.T01:intron 40.0%
TGTTTATATCTGCCGCTATC+AGG - Chr1:38640719-38640738 MsG0180002458.01.T01:intron 40.0%
TTATGGAGCAGTATGCAAAG+AGG - Chr1:38643979-38643998 MsG0180002458.01.T01:CDS 40.0%
TTGCAAGCAAATGCTGTAAC+AGG + Chr1:38643233-38643252 None:intergenic 40.0%
TTGGAAGGTTTGTGAGTCAA+AGG - Chr1:38643617-38643636 MsG0180002458.01.T01:intron 40.0%
TTTGATTGAGTGGTCATTGG+AGG - Chr1:38641956-38641975 MsG0180002458.01.T01:intron 40.0%
! AAGAATTTGGAACATGCTCG+AGG + Chr1:38643106-38643125 None:intergenic 40.0%
! AGGTTTAGGGTATCTCTCAT+TGG + Chr1:38641278-38641297 None:intergenic 40.0%
! CTTCGAAGGCGTAAAATGTA+TGG - Chr1:38639670-38639689 MsG0180002458.01.T01:CDS 40.0%
! GAAGGCGTAAAATGTATGGA+AGG - Chr1:38639674-38639693 MsG0180002458.01.T01:CDS 40.0%
! GGAATGGTTCGTTTCCTTTT+TGG - Chr1:38642800-38642819 MsG0180002458.01.T01:intron 40.0%
! GTGCTAGTCTGGAAAATTTG+AGG - Chr1:38643165-38643184 MsG0180002458.01.T01:intron 40.0%
! TACCAGTTTCTTGGGGTATT+TGG - Chr1:38640920-38640939 MsG0180002458.01.T01:intron 40.0%
! TGACTTTCTTCTGCCGATTA+TGG - Chr1:38642182-38642201 MsG0180002458.01.T01:intron 40.0%
! TGGAACCAGAAGCATAAACA+AGG + Chr1:38642912-38642931 None:intergenic 40.0%
! TGGCATTGAATAGTCTTCGA+AGG - Chr1:38639656-38639675 MsG0180002458.01.T01:CDS 40.0%
! TTTTGCAGTGAGCCATACAT+TGG - Chr1:38641064-38641083 MsG0180002458.01.T01:intron 40.0%
!! AAAGAAAACATGGGCTGGAA+TGG + Chr1:38641688-38641707 None:intergenic 40.0%
!! AATGGGTTTTCCAGCTTTTG+GGG + Chr1:38641458-38641477 None:intergenic 40.0%
!! CCTTTTTGGGCATATATTGC+AGG - Chr1:38642814-38642833 MsG0180002458.01.T01:intron 40.0%
!! GAAATGGGTTTTCCAGCTTT+TGG + Chr1:38641460-38641479 None:intergenic 40.0%
!! TCGAGGTATTTTTCTGCCTT+TGG + Chr1:38643089-38643108 None:intergenic 40.0%
!!! ATCATCCTCATTTTGGCTAC+TGG + Chr1:38639376-38639395 None:intergenic 40.0%
AAAAGAGGAAAGGGGGTTTC+TGG + Chr1:38640179-38640198 None:intergenic 45.0%
AACCTCAAAACTGCTACAGC+AGG + Chr1:38642542-38642561 None:intergenic 45.0%
AATGCCAAACTACCGGCATA+TGG - Chr1:38644100-38644119 MsG0180002458.01.T01:intron 45.0%
AATGGGGAGGAAAAATGGAG+AGG - Chr1:38642752-38642771 MsG0180002458.01.T01:intron 45.0%
AATGTATGGAAGGGCTTTGC+AGG - Chr1:38639684-38639703 MsG0180002458.01.T01:CDS 45.0%
ACATCATGAGCTGGAGTTGT+CGG - Chr1:38639481-38639500 MsG0180002458.01.T01:CDS 45.0%
ACTAGCTAACTGTGCTAGTC+TGG - Chr1:38643154-38643173 MsG0180002458.01.T01:intron 45.0%
AGCAAGCTCATAATCTGGGA+TGG + Chr1:38641615-38641634 None:intergenic 45.0%
AGCTTTCGTTCCCCATATTG+GGG + Chr1:38641994-38642013 None:intergenic 45.0%
AGGTTTGTGAGTCAAAGGCA+CGG - Chr1:38643622-38643641 MsG0180002458.01.T01:intron 45.0%
AGTCACATCCATGGTTGTCA+AGG + Chr1:38641421-38641440 None:intergenic 45.0%
ATGCCAAACTACCGGCATAT+GGG - Chr1:38644101-38644120 MsG0180002458.01.T01:intron 45.0%
ATGGAGCAGTATGCAAAGAG+GGG - Chr1:38643981-38644000 MsG0180002458.01.T01:CDS 45.0%
ATTGAGTGGTCATTGGAGGT+TGG - Chr1:38641960-38641979 MsG0180002458.01.T01:intron 45.0%
ATTGTGAGTTGTGAGGCAAG+AGG + Chr1:38641351-38641370 None:intergenic 45.0%
CACAATAGGTCCAACAACCT+GGG - Chr1:38643842-38643861 MsG0180002458.01.T01:intron 45.0%
CAGGATGGCCAATATACCAA+AGG + Chr1:38642523-38642542 None:intergenic 45.0%
CCCTACCCAGAATTGCATAA+AGG + Chr1:38643578-38643597 None:intergenic 45.0%
CCTATTCCCCAACAAAGCTT+TGG - Chr1:38644150-38644169 MsG0180002458.01.T01:CDS 45.0%
CCTTGCTGCAATTGAAGCTT+GGG - Chr1:38643656-38643675 MsG0180002458.01.T01:intron 45.0%
CTATTGAGCCTTAGTTTCCC+GGG + Chr1:38640112-38640131 None:intergenic 45.0%
CTCTGCCAATTATGTGCGAT+TGG + Chr1:38640645-38640664 None:intergenic 45.0%
CTGAAGTAGACATCATGAGC+TGG - Chr1:38639472-38639491 MsG0180002458.01.T01:CDS 45.0%
CTTGCTGCAATTGAAGCTTG+GGG - Chr1:38643657-38643676 MsG0180002458.01.T01:intron 45.0%
CTTGTCGAGAGCAGAATCAA+CGG + Chr1:38639595-38639614 None:intergenic 45.0%
GAACGTGCACTTAACAAGCA+TGG + Chr1:38639935-38639954 None:intergenic 45.0%
GACCAAATACCCCAAGAAAC+TGG + Chr1:38640925-38640944 None:intergenic 45.0%
GAGCTTTCGTTCCCCATATT+GGG + Chr1:38641995-38642014 None:intergenic 45.0%
GATGTGGCCAAGAACCTATT+TGG + Chr1:38641320-38641339 None:intergenic 45.0%
GCACATAATTGGCAGAGCAA+TGG - Chr1:38640648-38640667 MsG0180002458.01.T01:intron 45.0%
GCATAAAGGCGAAGCAAAGT+TGG + Chr1:38643564-38643583 None:intergenic 45.0%
GCCTTTATGCAATTCTGGGT+AGG - Chr1:38643574-38643593 MsG0180002458.01.T01:intron 45.0%
GCTATTGAGCCTTAGTTTCC+CGG + Chr1:38640113-38640132 None:intergenic 45.0%
GCTTCGCCTTTATGCAATTC+TGG - Chr1:38643569-38643588 MsG0180002458.01.T01:intron 45.0%
GGAGACGTCAGAACTATTCA+AGG - Chr1:38639545-38639564 MsG0180002458.01.T01:intron 45.0%
GGAGTGGGTAAAAAATGGAG+AGG + Chr1:38642634-38642653 None:intergenic 45.0%
GTCAGAACTATTCAAGGCGA+TGG - Chr1:38639551-38639570 MsG0180002458.01.T01:intron 45.0%
GTCATTCAATGCAGCTCTCT+GGG - Chr1:38642571-38642590 MsG0180002458.01.T01:intron 45.0%
GTCCTTAAGGAAGCTTCTAC+GGG + Chr1:38639856-38639875 None:intergenic 45.0%
GTGAACCAGACCATCTAACA+CGG - Chr1:38643433-38643452 MsG0180002458.01.T01:intron 45.0%
TCAAAACTGCTACAGCAGGA+TGG + Chr1:38642538-38642557 None:intergenic 45.0%
TCAGGCTCTTGAGTACAAAG+TGG - Chr1:38640737-38640756 MsG0180002458.01.T01:intron 45.0%
TCATTCAATGCAGCTCTCTG+GGG - Chr1:38642572-38642591 MsG0180002458.01.T01:intron 45.0%
TGAACCAGACCATCTAACAC+GGG - Chr1:38643434-38643453 MsG0180002458.01.T01:intron 45.0%
TGAAGATCGATTGACTGAGC+CGG - Chr1:38639423-38639442 MsG0180002458.01.T01:CDS 45.0%
TGAGACTAATCACCCAACTG+TGG + Chr1:38640862-38640881 None:intergenic 45.0%
TGATTCTGCTCTCGACAAGT+GGG - Chr1:38639596-38639615 MsG0180002458.01.T01:intron 45.0%
TGCCGATGATCATGATGACA+TGG - Chr1:38639395-38639414 MsG0180002458.01.T01:CDS 45.0%
TGGTTGCCAAACCCCAATAT+GGG - Chr1:38641980-38641999 MsG0180002458.01.T01:intron 45.0%
TGTACTCAAGAGCCTGATAG+CGG + Chr1:38640734-38640753 None:intergenic 45.0%
TGTGAGGCAAGAGGCAATTT+AGG + Chr1:38641342-38641361 None:intergenic 45.0%
TTGATTCTGCTCTCGACAAG+TGG - Chr1:38639595-38639614 MsG0180002458.01.T01:intron 45.0%
TTGGAACTGTAGGCTTGGAT+TGG - Chr1:38642983-38643002 MsG0180002458.01.T01:intron 45.0%
TTGGTTGCCAAACCCCAATA+TGG - Chr1:38641979-38641998 MsG0180002458.01.T01:intron 45.0%
TTTCTCCAAACTGTGCTGAG+CGG - Chr1:38639971-38639990 MsG0180002458.01.T01:CDS 45.0%
TTTGGTTGGAACTGTAGGCT+TGG - Chr1:38642978-38642997 MsG0180002458.01.T01:intron 45.0%
! ATATGGACTGCCCAATCCTT+TGG - Chr1:38641504-38641523 MsG0180002458.01.T01:intron 45.0%
! ATCCTGCTGTAGCAGTTTTG+AGG - Chr1:38642537-38642556 MsG0180002458.01.T01:intron 45.0%
! CAACCAACACGTTGCTTTAC+TGG + Chr1:38642220-38642239 None:intergenic 45.0%
! CATCGGCATCATCCTCATTT+TGG + Chr1:38639383-38639402 None:intergenic 45.0%
! CTTGCTGAATTGCTGATTGC+TGG - Chr1:38641629-38641648 MsG0180002458.01.T01:intron 45.0%
! GCAAGAGGCAATTTAGGATG+TGG + Chr1:38641336-38641355 None:intergenic 45.0%
!! AAACATGGGCTGGAATGGAA+TGG + Chr1:38641683-38641702 None:intergenic 45.0%
!! CCAAAGCTTTGTTGGGGAAT+AGG + Chr1:38644153-38644172 None:intergenic 45.0%
!! GGAGATAGTGGATGCACAAT+AGG - Chr1:38643828-38643847 MsG0180002458.01.T01:intron 45.0%
!!! TGTAGCAGTTTTGAGGTTGC+CGG - Chr1:38642544-38642563 MsG0180002458.01.T01:intron 45.0%
AACTACCGGCATATGGGATC+AGG - Chr1:38644107-38644126 MsG0180002458.01.T01:intron 50.0%
AAGAGACACAAGTGCATCCC+AGG + Chr1:38643862-38643881 None:intergenic 50.0%
AAGCAGGCAAGAGATTGGGT+TGG - Chr1:38639636-38639655 MsG0180002458.01.T01:CDS 50.0%
ACAAGTGCATCCCAGGTTGT+TGG + Chr1:38643855-38643874 None:intergenic 50.0%
ACTACCGGCATATGGGATCA+GGG - Chr1:38644108-38644127 MsG0180002458.01.T01:intron 50.0%
AGCAGTCTCAGTTGCAGTCT+CGG - Chr1:38640237-38640256 MsG0180002458.01.T01:intron 50.0%
AGGAAGAGAGAGAGAGAGAG+TGG + Chr1:38642311-38642330 None:intergenic 50.0%
ATTGGCTGCTCAGGATGAGT+AGG + Chr1:38641260-38641279 None:intergenic 50.0%
CATAAGCCTGTGCTAGAGCA+TGG + Chr1:38644078-38644097 None:intergenic 50.0%
CCAAATTGCGTGGCTACCAA+AGG - Chr1:38643070-38643089 MsG0180002458.01.T01:intron 50.0%
CCCAAGCTTCAATTGCAGCA+AGG + Chr1:38643659-38643678 None:intergenic 50.0%
CGGTGCAAAGATTGCTGGAT+GGG - Chr1:38639991-38640010 MsG0180002458.01.T01:CDS 50.0%
CTGAAAGTTCAGCACAGAGG+TGG + Chr1:38642074-38642093 None:intergenic 50.0%
GATCCCATATGCCGGTAGTT+TGG + Chr1:38644107-38644126 None:intergenic 50.0%
GCACAATAGGTCCAACAACC+TGG - Chr1:38643841-38643860 MsG0180002458.01.T01:intron 50.0%
GCCTTGCTGCAATTGAAGCT+TGG - Chr1:38643655-38643674 MsG0180002458.01.T01:intron 50.0%
GCTGCATTGAATGACCAACC+CGG + Chr1:38642566-38642585 None:intergenic 50.0%
GGAAGAGAGAGAGAGAGAGT+GGG + Chr1:38642310-38642329 None:intergenic 50.0%
GGAGCTTTCGTTCCCCATAT+TGG + Chr1:38641996-38642015 None:intergenic 50.0%
GGTCATTCAATGCAGCTCTC+TGG - Chr1:38642570-38642589 MsG0180002458.01.T01:intron 50.0%
GGTGACAAAACCTTCACCAC+CGG + Chr1:38640081-38640100 None:intergenic 50.0%
GGTTGCCAAACCCCAATATG+GGG - Chr1:38641981-38642000 MsG0180002458.01.T01:intron 50.0%
GTTGAAGAACGTGGAGGTTG+TGG + Chr1:38641385-38641404 None:intergenic 50.0%
TCAAGCAGGGGAAGTCGAAA+AGG - Chr1:38643887-38643906 MsG0180002458.01.T01:intron 50.0%
TCCATTCCATGCTCTAGCAC+AGG - Chr1:38644069-38644088 MsG0180002458.01.T01:intron 50.0%
TCGTTCCCCATATTGGGGTT+TGG + Chr1:38641989-38642008 None:intergenic 50.0%
TGGCCAGTAAAGCAACGTGT+TGG - Chr1:38642214-38642233 MsG0180002458.01.T01:intron 50.0%
TGGCGCAACTTGATCCGTTT+AGG - Chr1:38644182-38644201 MsG0180002458.01.T01:CDS 50.0%
TGGCTGAAAGTTCAGCACAG+AGG + Chr1:38642077-38642096 None:intergenic 50.0%
TGTCTACTTCAGCAGCGTCA+CGG + Chr1:38639464-38639483 None:intergenic 50.0%
TTCCAACACTCCCCAAAAGC+TGG - Chr1:38641445-38641464 MsG0180002458.01.T01:intron 50.0%
! AGGAAAGGGGGTTTCTGGAT+CGG + Chr1:38640174-38640193 None:intergenic 50.0%
! CCTTTGGTAGCCACGCAATT+TGG + Chr1:38643073-38643092 None:intergenic 50.0%
! GGCAGACACTGTTTTGCAGA+AGG - Chr1:38643908-38643927 MsG0180002458.01.T01:intron 50.0%
! GGTTTGTGAGTCAAAGGCAC+GGG - Chr1:38643623-38643642 MsG0180002458.01.T01:intron 50.0%
! GTATCTCTCATTGGCTGCTC+AGG + Chr1:38641269-38641288 None:intergenic 50.0%
! TTTTGTCACCTGACCTGACC+CGG - Chr1:38640091-38640110 MsG0180002458.01.T01:CDS 50.0%
!! CAGGAGTGCTTCGTAATTCC+TGG + Chr1:38643751-38643770 None:intergenic 50.0%
!! CTCTCGACAAGTGGGTTGAA+AGG - Chr1:38639604-38639623 MsG0180002458.01.T01:intron 50.0%
!! GTCTGCAAGTTGGCTTGTGA+AGG - Chr1:38641534-38641553 MsG0180002458.01.T01:intron 50.0%
!! TGGGCAGCCAAAGCTTTGTT+GGG + Chr1:38644160-38644179 None:intergenic 50.0%
!! TTCCAGCTTTTGGGGAGTGT+TGG + Chr1:38641450-38641469 None:intergenic 50.0%
!! TTTTTCGGTAAGCCCAGCTG+CGG + Chr1:38643481-38643500 None:intergenic 50.0%
!!! GTAGCAGTTTTGAGGTTGCC+GGG - Chr1:38642545-38642564 MsG0180002458.01.T01:intron 50.0%
ACGGCTATCTCGTCTGCATC+CGG + Chr1:38639445-38639464 None:intergenic 55.0%
AGCACAGAGGTGGTGCAGTA+GGG + Chr1:38642064-38642083 None:intergenic 55.0%
AGGATCCCAACTCGTCTGCA+GGG - Chr1:38642772-38642791 MsG0180002458.01.T01:intron 55.0%
CCAAGGATGCCCGTGTTAGA+TGG + Chr1:38643446-38643465 None:intergenic 55.0%
CCATCTAACACGGGCATCCT+TGG - Chr1:38643443-38643462 MsG0180002458.01.T01:intron 55.0%
CTCTCCCTGATCCCATATGC+CGG + Chr1:38644115-38644134 None:intergenic 55.0%
CTGAGCGGTGCAAAGATTGC+TGG - Chr1:38639986-38640005 MsG0180002458.01.T01:CDS 55.0%
GAGAGGAGAGAGAGAGAGAG+AGG + Chr1:38642331-38642350 None:intergenic 55.0%
GATGCCCGTGTTAGATGGTC+TGG + Chr1:38643441-38643460 None:intergenic 55.0%
GCAAAGATTGCTGGATGGGC+TGG - Chr1:38639995-38640014 MsG0180002458.01.T01:CDS 55.0%
GCAGCACTCTTCTCTTGCAC+CGG - Chr1:38640059-38640078 MsG0180002458.01.T01:CDS 55.0%
GCAGTAGGGTTTCGTCCAGT+GGG + Chr1:38642050-38642069 None:intergenic 55.0%
GCCTGTGCTAGAGCATGGAA+TGG + Chr1:38644073-38644092 None:intergenic 55.0%
GCGGTGCAAAGATTGCTGGA+TGG - Chr1:38639990-38640009 MsG0180002458.01.T01:CDS 55.0%
GGCCCGTAGAAGCTTCCTTA+AGG - Chr1:38639851-38639870 MsG0180002458.01.T01:CDS 55.0%
TCCAGTGGGCAATGGCACAT+AGG + Chr1:38642036-38642055 None:intergenic 55.0%
TCTGGGTAGGGCTGATGAAG+TGG - Chr1:38643587-38643606 MsG0180002458.01.T01:intron 55.0%
TGACCTGACCCGGGAAACTA+AGG - Chr1:38640101-38640120 MsG0180002458.01.T01:CDS 55.0%
TGCAGTAGGGTTTCGTCCAG+TGG + Chr1:38642051-38642070 None:intergenic 55.0%
TTAGTTTCCCGGGTCAGGTC+AGG + Chr1:38640102-38640121 None:intergenic 55.0%
TTGCACCGCTCAGCACAGTT+TGG + Chr1:38639979-38639998 None:intergenic 55.0%
TTTGTCACCTGACCTGACCC+GGG - Chr1:38640092-38640111 MsG0180002458.01.T01:CDS 55.0%
! ACGGATCAAGTTGCGCCAAC+TGG + Chr1:38644180-38644199 None:intergenic 55.0%
! CAAAGCTTTGGCTGCCCAGT+TGG - Chr1:38644162-38644181 MsG0180002458.01.T01:CDS 55.0%
! CGGATCAAGTTGCGCCAACT+GGG + Chr1:38644179-38644198 None:intergenic 55.0%
! CTGGGCAGCCAAAGCTTTGT+TGG + Chr1:38644161-38644180 None:intergenic 55.0%
! GGAAAGGGGGTTTCTGGATC+GGG + Chr1:38640173-38640192 None:intergenic 55.0%
! GGAGTCCCCTAAAGCATCAC+AGG + Chr1:38641909-38641928 None:intergenic 55.0%
! TCCTATGTGCCATTGCCCAC+TGG - Chr1:38642032-38642051 MsG0180002458.01.T01:intron 55.0%
! TGAGTCAAAGGCACGGGTTG+AGG - Chr1:38643629-38643648 MsG0180002458.01.T01:intron 55.0%
! TTCTCTTGCACCGGTGGTGA+AGG - Chr1:38640068-38640087 MsG0180002458.01.T01:CDS 55.0%
!! GGGCAGCCAAAGCTTTGTTG+GGG + Chr1:38644159-38644178 None:intergenic 55.0%
!!! CAGTTTTGAGGTTGCCGGGT+TGG - Chr1:38642549-38642568 MsG0180002458.01.T01:intron 55.0%
CAACTCGTCTGCAGGGGAGA+GGG - Chr1:38642779-38642798 MsG0180002458.01.T01:intron 60.0%
CAGCACAGAGGTGGTGCAGT+AGG + Chr1:38642065-38642084 None:intergenic 60.0%
CCAGGCATTATGCCGCAGCT+GGG - Chr1:38643466-38643485 MsG0180002458.01.T01:intron 60.0%
CGGCATATGGGATCAGGGAG+AGG - Chr1:38644113-38644132 MsG0180002458.01.T01:intron 60.0%
CTCTCCCCTGCAGACGAGTT+GGG + Chr1:38642780-38642799 None:intergenic 60.0%
GAGCCTTAGTTTCCCGGGTC+AGG + Chr1:38640107-38640126 None:intergenic 60.0%
GAGGATCCCAACTCGTCTGC+AGG - Chr1:38642771-38642790 MsG0180002458.01.T01:intron 60.0%
GCACTCTTCTCTTGCACCGG+TGG - Chr1:38640062-38640081 MsG0180002458.01.T01:CDS 60.0%
GGATCCCAACTCGTCTGCAG+GGG - Chr1:38642773-38642792 MsG0180002458.01.T01:intron 60.0%
GGGTTTCGTCCAGTGGGCAA+TGG + Chr1:38642044-38642063 None:intergenic 60.0%
TAACACGGGCATCCTTGGCC+AGG - Chr1:38643448-38643467 MsG0180002458.01.T01:intron 60.0%
TGCGGCATAATGCCTGGCCA+AGG + Chr1:38643463-38643482 None:intergenic 60.0%
CCAACTCGTCTGCAGGGGAG+AGG - Chr1:38642778-38642797 MsG0180002458.01.T01:intron 65.0%
CCCAGCTGCGGCATAATGCC+TGG + Chr1:38643469-38643488 None:intergenic 65.0%
CCTCTCCCCTGCAGACGAGT+TGG + Chr1:38642781-38642800 None:intergenic 65.0%
CGTCTGCAGGGGAGAGGGAA+TGG - Chr1:38642784-38642803 MsG0180002458.01.T01:intron 65.0%
GCCAGGCATTATGCCGCAGC+TGG - Chr1:38643465-38643484 MsG0180002458.01.T01:intron 65.0%
Chromosome Type Strat End Strand Name
Chr1 gene 38639370 38644234 38639370 ID=MsG0180002458.01;Name=MsG0180002458.01
Chr1 mRNA 38639370 38644234 38639370 ID=MsG0180002458.01.T01;Parent=MsG0180002458.01;Name=MsG0180002458.01.T01;_AED=0.44;_eAED=0.44;_QI=0|0|0|1|1|1|4|0|287
Chr1 exon 38644142 38644234 38644142 ID=MsG0180002458.01.T01:exon:12689;Parent=MsG0180002458.01.T01
Chr1 exon 38643979 38644058 38643979 ID=MsG0180002458.01.T01:exon:12690;Parent=MsG0180002458.01.T01
Chr1 exon 38639616 38640134 38639616 ID=MsG0180002458.01.T01:exon:12691;Parent=MsG0180002458.01.T01
Chr1 exon 38639370 38639541 38639370 ID=MsG0180002458.01.T01:exon:12692;Parent=MsG0180002458.01.T01
Chr1 CDS 38644142 38644234 38644142 ID=MsG0180002458.01.T01:cds;Parent=MsG0180002458.01.T01
Chr1 CDS 38643979 38644058 38643979 ID=MsG0180002458.01.T01:cds;Parent=MsG0180002458.01.T01
Chr1 CDS 38639616 38640134 38639616 ID=MsG0180002458.01.T01:cds;Parent=MsG0180002458.01.T01
Chr1 CDS 38639370 38639541 38639370 ID=MsG0180002458.01.T01:cds;Parent=MsG0180002458.01.T01
Gene Sequence

>MsG0180002458.01.T01

ATGCCAGTAGCCAAAATGAGGATGATGCCGATGATCATGATGACATGGAGAGTTGAAGATCGATTGACTGAGCCGGATGCAGACGAGATAGCCGAGACGTCAGAACTATTCAAGGCGATGGTAAGTGTTTCAGTTTTGTCCGTTGATTCTGCTCTCGACAAGTGGGTTGAAAGGCATTATGCCGCAGCTGGGCTTACCGAAAAAACTGAAGCTATATTGAAGGAGATTGAAGGTGAAAACTTGAAAGAGAATATGTGGGTATGCCCAACTTTGCTTCGCCTTTATGCAATTCTGGGTAGGGCTGATGAAGTGGAGAGAATTTGGAAGGTTTGTGAGTCAAAGGCACGGGTTGAGGACTGCCTTGCTGCAATTGAAGCTTGGGGAAGATTGAAGAAAATTGAAGAAGCAGAGGCAGTTTTTGAGATGATGTCAAATAAATGGAAACTTACTGCCAGGAATTACGAAGCACTCCTGAAAATTTATATAAGGCATAAGATGCTAAACAAGGGTAAGGATCTTATTAAGACAATGGGAGATAGTGGATGCACAATAGGTCCAACAACCTGGGATGCACTTGTGTCTCTTTATGTTCAAGCAGGGGAAGTCGAAAAGGCAGACACTGTTTTGCAGAAGGCACTACAGCAAAATAAGATGAAGCCAATGTTTACTACTTTTATGACTATTATGGAGCAAATATCTCCATTCCATGCTCTAGCACAGGCTTATGAAAATGCCAAACTACCGGCATATGGGATCAGGGAGAGGATGAAAGCTGATAACCTATTCCCCAACAAAGCTTTGGCTGCCCAGTTGGCGCAACTTGATCCGTTTAGGAAAACTCCAGTTTCTGATTTGCTTGATTGA

Protein sequence

>MsG0180002458.01.T01

MPVAKMRMMPMIMMTWRVEDRLTEPDADEIAETSELFKAMVSVSVLSVDSALDKWVERHYAAAGLTEKTEAILKEIEGENLKENMWVCPTLLRLYAILGRADEVERIWKVCESKARVEDCLAAIEAWGRLKKIEEAEAVFEMMSNKWKLTARNYEALLKIYIRHKMLNKGKDLIKTMGDSGCTIGPTTWDALVSLYVQAGEVEKADTVLQKALQQNKMKPMFTTFMTIMEQISPFHALAQAYENAKLPAYGIRERMKADNLFPNKALAAQLAQLDPFRKTPVSDLLD*