AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480021354.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480021354.01.T01 MTR_4g072090 89.189 518 19 6 1 493 1 506 0.0 877
MsG0480021354.01.T01 MTR_4g072090 89.038 447 17 5 1 422 1 440 0.0 780
MsG0480021354.01.T01 MTR_1g023690 45.946 481 167 16 46 457 46 502 4.09e-84 270
MsG0480021354.01.T01 MTR_6g034945 52.535 217 91 6 261 474 76 283 3.37e-50 174
MsG0480021354.01.T01 MTR_3g467120 62.346 162 46 2 325 480 160 312 1.35e-49 174
MsG0480021354.01.T01 MTR_5g075390 65.942 138 38 1 303 440 129 257 1.57e-48 171
MsG0480021354.01.T01 MTR_2g099050 65.185 135 43 1 314 448 193 323 3.11e-48 172
MsG0480021354.01.T01 MTR_3g094020 63.768 138 42 1 303 440 77 206 3.75e-47 166
MsG0480021354.01.T01 MTR_2g090900 49.474 95 48 0 340 434 189 283 4.83e-20 91.3
MsG0480021354.01.T01 MTR_2g090900 49.474 95 48 0 340 434 189 283 6.40e-20 91.3
MsG0480021354.01.T01 MTR_4g079500 37.410 139 64 2 296 434 171 286 1.07e-19 90.5
MsG0480021354.01.T01 MTR_0405s0060 77.193 57 13 0 317 373 99 155 1.62e-19 88.2
MsG0480021354.01.T01 MTR_1g099030 35.870 184 100 6 296 473 76 247 6.65e-15 75.5
MsG0480021354.01.T01 MTR_8g088650 37.705 122 70 2 313 434 206 321 9.06e-12 67.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480021354.01.T01 AT4G38900 56.016 507 139 23 18 463 29 512 2.18e-145 428
MsG0480021354.01.T01 AT4G38900 56.016 507 139 23 18 463 29 512 2.18e-145 428
MsG0480021354.01.T01 AT4G38900 55.361 513 139 24 18 463 29 518 1.90e-142 421
MsG0480021354.01.T01 AT2G21230 50.562 445 154 13 86 473 72 507 1.10e-111 340
MsG0480021354.01.T01 AT2G21230 50.562 445 154 13 86 473 72 507 1.10e-111 340
MsG0480021354.01.T01 AT2G21230 49.667 451 155 14 86 473 72 513 2.78e-108 332
MsG0480021354.01.T01 AT2G21230 51.289 388 129 12 86 422 72 450 1.48e-99 307
MsG0480021354.01.T01 AT2G40620 64.583 144 50 1 297 440 104 246 1.11e-49 174
MsG0480021354.01.T01 AT1G06850 66.418 134 43 1 313 444 117 250 8.89e-49 171
MsG0480021354.01.T01 AT2G31370 56.250 176 48 3 265 440 153 299 1.09e-47 169
MsG0480021354.01.T01 AT2G31370 56.250 176 48 3 265 440 153 299 2.80e-47 169
MsG0480021354.01.T01 AT2G31370 56.250 176 48 3 265 440 153 299 2.80e-47 169
MsG0480021354.01.T01 AT2G31370 56.250 176 48 3 265 440 153 299 2.80e-47 169
MsG0480021354.01.T01 AT2G31370 56.250 176 48 3 265 440 153 299 2.80e-47 169
MsG0480021354.01.T01 AT2G31370 56.250 176 48 3 265 440 153 299 2.80e-47 169
MsG0480021354.01.T01 AT2G31370 56.250 176 48 3 265 440 153 299 2.80e-47 169
MsG0480021354.01.T01 AT1G06070 66.412 131 42 1 317 445 185 315 4.38e-47 169
MsG0480021354.01.T01 AT1G43700 46.552 232 95 6 268 483 109 327 1.42e-46 165
MsG0480021354.01.T01 AT2G12940 42.391 184 96 4 254 436 68 242 9.88e-38 140
MsG0480021354.01.T01 AT2G13150 41.899 179 96 3 256 434 71 241 1.46e-37 139
MsG0480021354.01.T01 AT2G12900 40.714 140 75 1 306 437 72 211 4.54e-30 118
MsG0480021354.01.T01 AT1G06850 65.517 87 28 1 313 397 117 203 1.42e-25 105
MsG0480021354.01.T01 AT3G58120 48.421 95 49 0 340 434 200 294 4.34e-20 91.7
MsG0480021354.01.T01 AT2G42380 48.421 95 49 0 340 434 184 278 1.21e-19 90.1
MsG0480021354.01.T01 AT2G42380 47.619 84 44 0 340 423 184 267 8.48e-17 80.9
MsG0480021354.01.T01 AT2G21235 37.107 159 80 4 279 434 309 450 2.86e-16 82.0
MsG0480021354.01.T01 AT3G58120 47.561 82 43 0 340 421 200 281 3.63e-16 79.3
MsG0480021354.01.T01 AT2G42380 44.211 95 42 1 340 434 184 267 3.60e-14 73.9
MsG0480021354.01.T01 AT1G58110 42.857 84 48 0 351 434 238 321 7.46e-12 67.4
MsG0480021354.01.T01 AT1G58110 42.857 84 48 0 351 434 238 321 7.46e-12 67.4

Find 133 sgRNAs with CRISPR-Local

Find 285 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTGGGTTATTTCAGGATTT+TGG 0.136650 4:-57014940 MsG0480021354.01.T01:intron
TTAAATATAAGACGGGAATT+AGG 0.261863 4:+57012478 None:intergenic
TTGATGTCGCCTGGTAATTC+GGG 0.265329 4:-57015171 MsG0480021354.01.T01:CDS
CTCTTCACCACCGACGAATT+AGG 0.271919 4:+57015590 None:intergenic
GTATCGCATCTTGCGCTCTT+TGG 0.276622 4:+57014893 None:intergenic
ACAGAATTCCATAGTTGTTT+TGG 0.288207 4:-57012557 MsG0480021354.01.T01:three_prime_UTR
TGCACAACTTACTTTGTTGC+AGG 0.290633 4:-57014814 MsG0480021354.01.T01:intron
GTTGATGTCGCCTGGTAATT+CGG 0.299723 4:-57015172 MsG0480021354.01.T01:CDS
GGCATTTGCGGCCGTGAAAC+CGG 0.329642 4:+57015929 None:intergenic
TGGTGAAGAGGGAAACAAAT+TGG 0.346786 4:-57015577 MsG0480021354.01.T01:CDS
CTACTAACAGTTCGCATTTG+TGG 0.351548 4:+57016040 None:intergenic
ATCTGAGAGTAAGGTGAAAT+AGG 0.358249 4:+57015965 None:intergenic
ACTTACGACCAAAACAACTA+TGG 0.373076 4:+57012549 None:intergenic
TGGCTTCAGTCTGCAGAGTC+TGG 0.376326 4:+57014847 None:intergenic
GGAACTTCAACTCACTATTC+TGG 0.380487 4:+57014497 None:intergenic
TGGTGATAATCGCGATGATT+TGG 0.392741 4:-57015427 MsG0480021354.01.T01:CDS
TTGCTACAGCTGAGCTGAAT+GGG 0.408125 4:-57012809 MsG0480021354.01.T01:CDS
GGGATCTGGTGTGGGTGAGA+TGG 0.410470 4:+57015989 None:intergenic
TCTAACAGTGATATTCCGTT+TGG 0.413476 4:-57015677 MsG0480021354.01.T01:CDS
GCCGGAGTTGAAGAAAATTA+TGG 0.416398 4:-57015094 MsG0480021354.01.T01:CDS
AAAGAACGAGTTAAAGCAAT+AGG 0.417310 4:-57012652 MsG0480021354.01.T01:exon
ACTTTGTGACCGAGCTAGAT+AGG 0.419082 4:+57012513 None:intergenic
GAAGGGAATAAGAGAAGTGC+AGG 0.419487 4:-57015306 MsG0480021354.01.T01:CDS
TTGAAGATGCCGCCTTCACC+TGG 0.419861 4:-57015198 MsG0480021354.01.T01:CDS
GCGGATGCTGATGCTGTTGT+TGG 0.419942 4:+57012730 None:intergenic
CCTGTTGTTCCATGGATTGA+AGG 0.422833 4:+57014473 None:intergenic
CTTTAACTCGTTCTTTGAGT+TGG 0.425302 4:+57012659 None:intergenic
CCTTCAATCCATGGAACAAC+AGG 0.431813 4:-57014473 MsG0480021354.01.T01:CDS
TGCTGTTGTTGGAACATCAT+AGG 0.440652 4:+57012741 None:intergenic
ATCTGGTGTGGGTGAGATGG+TGG 0.449378 4:+57015992 None:intergenic
CAGCACCTCTTAGCCCGCTT+CGG 0.449837 4:+57015036 None:intergenic
ACAACAAATGAACAATCATA+TGG 0.450801 4:-57016101 MsG0480021354.01.T01:CDS
GTACTATGCGACGGCATTTG+CGG 0.455092 4:+57015917 None:intergenic
TGCGGAATCATGCAGTTAGA+AGG 0.459177 4:+57012777 None:intergenic
AACGAGTTAAAGCAATAGGT+TGG 0.459772 4:-57012648 MsG0480021354.01.T01:exon
AGAGTAGTGTTAATGAGAGT+GGG 0.468643 4:-57015347 MsG0480021354.01.T01:CDS
TTTGGGAATGGTGAGTTTAG+TGG 0.469524 4:-57015117 MsG0480021354.01.T01:CDS
AAGGTGAAATAGGTGGGATC+TGG 0.472913 4:+57015975 None:intergenic
GAAGTTCCGCCTTCAATCCA+TGG 0.476046 4:-57014482 MsG0480021354.01.T01:CDS
GGTGAAGAGGGAAACAAATT+GGG 0.482258 4:-57015576 MsG0480021354.01.T01:CDS
AGCAGAAATCAAAGAGGAAG+TGG 0.482492 4:-57016019 MsG0480021354.01.T01:CDS
GAAGAAATCGTCGTTGTCGC+CGG 0.482957 4:-57015534 MsG0480021354.01.T01:CDS
GAAATAGGTGGGATCTGGTG+TGG 0.483403 4:+57015980 None:intergenic
ACGAGTTAAAGCAATAGGTT+GGG 0.487995 4:-57012647 MsG0480021354.01.T01:exon
TGATTATTCATCTGAGAGTA+AGG 0.492306 4:+57015956 None:intergenic
GAGAGTAGTGTTAATGAGAG+TGG 0.492697 4:-57015348 MsG0480021354.01.T01:CDS
AAATAGGTGGGATCTGGTGT+GGG 0.492947 4:+57015981 None:intergenic
GCGAGTGGAACGAAGACTAA+TGG 0.498624 4:-57015396 MsG0480021354.01.T01:CDS
GGATCATGCTGACGTTTCCA+TGG 0.501467 4:-57015786 MsG0480021354.01.T01:CDS
ATTGCTACAGCTGAGCTGAA+TGG 0.502115 4:-57012810 MsG0480021354.01.T01:CDS
GATACTATGCAGAGGAGGGA+AGG 0.503771 4:-57015324 MsG0480021354.01.T01:CDS
GCATTTGCGGCCGTGAAACC+GGG 0.507657 4:+57015930 None:intergenic
CCTGGAGGGTTGATGTCGCC+TGG 0.507892 4:-57015180 MsG0480021354.01.T01:CDS
CGTTGATTCCGCTGAGAGGA+AGG 0.510892 4:-57015625 MsG0480021354.01.T01:CDS
TGCTATGGCTGATCCGAAGC+GGG 0.511052 4:-57015049 MsG0480021354.01.T01:CDS
TTGGGAATGGTGAGTTTAGT+GGG 0.516554 4:-57015116 MsG0480021354.01.T01:CDS
TTTAGTTTAGAGTTTGGGAA+TGG 0.517287 4:-57015129 MsG0480021354.01.T01:CDS
CTGATCCGAAGCGGGCTAAG+AGG 0.529672 4:-57015041 MsG0480021354.01.T01:intron
GGGAATAAGAGAAGTGCAGG+AGG 0.532585 4:-57015303 MsG0480021354.01.T01:CDS
ATAATCAGATCCCGGTTTCA+CGG 0.535436 4:-57015940 MsG0480021354.01.T01:CDS
GTTAAAGCAATAGGTTGGGT+TGG 0.538667 4:-57012643 MsG0480021354.01.T01:exon
AAAGCAATAGGTTGGGTTGG+AGG 0.539880 4:-57012640 MsG0480021354.01.T01:exon
AGTGACGTCACGATCTTCCA+TGG 0.547547 4:+57015769 None:intergenic
TGGGTTGGAGGTCGTGCAGA+CGG 0.552078 4:-57012628 MsG0480021354.01.T01:three_prime_UTR
GACATCAACCCTCCAGGTGA+AGG 0.553333 4:+57015186 None:intergenic
TGCTGTTGTTGTTGATGCTG+CGG 0.553402 4:+57012711 None:intergenic
CTAATTCGTCGGTGGTGAAG+AGG 0.554128 4:-57015589 MsG0480021354.01.T01:CDS
ATACTATGCAGAGGAGGGAA+GGG 0.554603 4:-57015323 MsG0480021354.01.T01:CDS
GAAGGGTTTCTAGCAGCAAA+CGG 0.555470 4:+57015728 None:intergenic
TAATTCGTCGGTGGTGAAGA+GGG 0.558044 4:-57015588 MsG0480021354.01.T01:CDS
CATCAACAACAGCAGCAGAA+TGG 0.558598 4:-57012687 MsG0480021354.01.T01:CDS
GAATGGTGAGTTTAGTGGGC+CGG 0.563027 4:-57015112 MsG0480021354.01.T01:CDS
GAAGATTCGCGAAACGTGCA+AGG 0.565171 4:+57015818 None:intergenic
GAGTAGTGTTAATGAGAGTG+GGG 0.567227 4:-57015346 MsG0480021354.01.T01:CDS
TGATGTCGCCTGGTAATTCG+GGG 0.567782 4:-57015170 MsG0480021354.01.T01:CDS
CTAGCAGCAAACGGAGGCAA+CGG 0.571219 4:+57015737 None:intergenic
GAATGAGGCGCTTACTGCCG+AGG 0.573329 4:-57012847 MsG0480021354.01.T01:CDS
AATCTTCAGTCTTTGAACCT+CGG 0.578364 4:+57012830 None:intergenic
GTGGGGATACTATGCAGAGG+AGG 0.579437 4:-57015329 MsG0480021354.01.T01:CDS
ACATTATAGAAGTGTTTCGA+TGG 0.580671 4:-57015259 MsG0480021354.01.T01:CDS
TTCGCAATGCCTATCTAGCT+CGG 0.582179 4:-57012522 MsG0480021354.01.T01:three_prime_UTR
TGAGAGTAAGGTGAAATAGG+TGG 0.582251 4:+57015968 None:intergenic
GAGAGTAAGGTGAAATAGGT+GGG 0.588611 4:+57015969 None:intergenic
CCAGGCGACATCAACCCTCC+AGG 0.588772 4:+57015180 None:intergenic
ATCAACCCTCCAGGTGAAGG+CGG 0.596866 4:+57015189 None:intergenic
CTTCTATAATGTCTCGTAGT+CGG 0.597005 4:+57015270 None:intergenic
AACGTGCAAGGGCTGAGAGG+CGG 0.597136 4:+57015830 None:intergenic
AGATGCCGCCTTCACCTGGA+GGG 0.599939 4:-57015194 MsG0480021354.01.T01:CDS
CTTCCTCTCAGCGGAATCAA+CGG 0.601600 4:+57015626 None:intergenic
AAAACAGTAGAAAATCCAAA+CGG 0.603502 4:+57015662 None:intergenic
CATTTCAGAGCTAGAACACA+AGG 0.603689 4:-57014871 MsG0480021354.01.T01:CDS
AGGGAAACAAATTGGGAACA+TGG 0.604048 4:-57015569 MsG0480021354.01.T01:CDS
AAATCGTCGTTGTCGCCGGA+AGG 0.604451 4:-57015530 MsG0480021354.01.T01:intron
TGATGCATTAAAGTGTGGTA+TGG 0.606399 4:+57016069 None:intergenic
TCAGATGAATAATCAGATCC+CGG 0.607400 4:-57015948 MsG0480021354.01.T01:CDS
GTCAGCATGATCCGACGTGG+AGG 0.611432 4:+57015796 None:intergenic
AGTTGTTAAACCTAATTCGT+CGG 0.613606 4:-57015600 MsG0480021354.01.T01:CDS
AAGATGCCGCCTTCACCTGG+AGG 0.614128 4:-57015195 MsG0480021354.01.T01:CDS
TTGGGAACATGGTAATGTAG+AGG 0.615840 4:-57015558 MsG0480021354.01.T01:CDS
TGGGGATACTATGCAGAGGA+GGG 0.616806 4:-57015328 MsG0480021354.01.T01:CDS
GATCGTGTGTGGGAAGGTGT+AGG 0.618822 4:+57015890 None:intergenic
GTTAGTAGCAGAAATCAAAG+AGG 0.620000 4:-57016025 MsG0480021354.01.T01:CDS
CCGCCGTTGATTCCGCTGAG+AGG 0.624123 4:-57015629 MsG0480021354.01.T01:CDS
GATTGAAAGAAATACCATCT+CGG 0.625004 4:+57014443 None:intergenic
GTTGATTCCGCTGAGAGGAA+GGG 0.625282 4:-57015624 MsG0480021354.01.T01:CDS
GAGAGTGATCGTGTGTGGGA+AGG 0.627896 4:+57015884 None:intergenic
GAAACTTGCTGAGATTGCTA+TGG 0.628174 4:-57015064 MsG0480021354.01.T01:CDS
TCATCTAATAGCTCTGAATG+AGG 0.629687 4:-57012862 MsG0480021354.01.T01:intron
GATTTGGACAGTAGAGCGAG+TGG 0.629856 4:-57015411 MsG0480021354.01.T01:CDS
GTTGAGAGAGTGATCGTGTG+TGG 0.632845 4:+57015879 None:intergenic
TGTATGCAGAGAGATTCAGT+TGG 0.633937 4:-57014529 MsG0480021354.01.T01:intron
TACCGCCGAGAAAATCTCAC+CGG 0.639423 4:-57015703 MsG0480021354.01.T01:CDS
TGCTACAGCTGAGCTGAATG+GGG 0.641201 4:-57012808 MsG0480021354.01.T01:CDS
GTTGTTCCATGGATTGAAGG+CGG 0.649555 4:+57014476 None:intergenic
CGAAACGTGCAAGGGCTGAG+AGG 0.651618 4:+57015827 None:intergenic
GTAGGACTTGTACTATGCGA+CGG 0.653735 4:+57015908 None:intergenic
TTGCTATGGCTGATCCGAAG+CGG 0.654077 4:-57015050 MsG0480021354.01.T01:CDS
TGTTAAACCTAATTCGTCGG+TGG 0.655838 4:-57015597 MsG0480021354.01.T01:CDS
TCGCGAATCTTCCTCCACGT+CGG 0.657479 4:-57015807 MsG0480021354.01.T01:CDS
CAACAGGCAAAACTCCGAGA+TGG 0.660037 4:-57014457 MsG0480021354.01.T01:intron
ACAACTTCCCTTCCTCTCAG+CGG 0.663420 4:+57015617 None:intergenic
GATGTCGCCTGGTAATTCGG+GGG 0.663897 4:-57015169 MsG0480021354.01.T01:CDS
AAGTTGTGCAGAAAGTGTAG+TGG 0.665732 4:+57014827 None:intergenic
AAGATTCGCGAAACGTGCAA+GGG 0.666107 4:+57015819 None:intergenic
TTGAGAGAGTGATCGTGTGT+GGG 0.674945 4:+57015880 None:intergenic
ATAGGATTGACAGAATGTTG+CGG 0.677622 4:+57012759 None:intergenic
TGTGATGATGCATTAAAGTG+TGG 0.678486 4:+57016064 None:intergenic
AGTGGAACGAAGACTAATGG+TGG 0.685995 4:-57015393 MsG0480021354.01.T01:CDS
AACGTCAGCATGATCCGACG+TGG 0.690918 4:+57015793 None:intergenic
GAATATCACTGTTAGAACGC+CGG 0.693141 4:+57015684 None:intergenic
GGGTTTCTAGCAGCAAACGG+AGG 0.696020 4:+57015731 None:intergenic
AGAGTGGGGATACTATGCAG+AGG 0.714021 4:-57015332 MsG0480021354.01.T01:CDS
CCTCTCAGCGGAATCAACGG+CGG 0.721208 4:+57015629 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTTGAAAATGAATTAATAA+AGG + Chr4:57014980-57014999 None:intergenic 10.0%
!! TTTGAAAATGAATTAATAAA+GGG + Chr4:57014979-57014998 None:intergenic 10.0%
!! TTGAAAATGAATTAATAAAG+GGG + Chr4:57014978-57014997 None:intergenic 15.0%
!!! AAAAAAACATATTTTGGTTA+TGG - Chr4:57014893-57014912 MsG0480021354.01.T01:CDS 15.0%
!!! CTATATTTTAAATATAAGAC+GGG + Chr4:57015975-57015994 None:intergenic 15.0%
!!! GCTATATTTTAAATATAAGA+CGG + Chr4:57015976-57015995 None:intergenic 15.0%
!!! TAATTCATTTTCAAATTTCT+GGG - Chr4:57014984-57015003 MsG0480021354.01.T01:intron 15.0%
!!! TATGAGAAAAAAACATATTT+TGG - Chr4:57014887-57014906 MsG0480021354.01.T01:CDS 15.0%
!!! TCATAGAATTTTTAAAAATG+TGG - Chr4:57014197-57014216 MsG0480021354.01.T01:intron 15.0%
!!! TTAATTCATTTTCAAATTTC+TGG - Chr4:57014983-57015002 MsG0480021354.01.T01:intron 15.0%
!!! TTTTCTTTTTCTTTTAGAAT+CGG + Chr4:57014646-57014665 None:intergenic 15.0%
!! AAACAATTAAACATCAGTAA+TGG + Chr4:57014949-57014968 None:intergenic 20.0%
!! AACCAAATAGATGTTATAAT+AGG + Chr4:57015218-57015237 None:intergenic 20.0%
!! ATCCTATTATAACATCTATT+TGG - Chr4:57015213-57015232 MsG0480021354.01.T01:CDS 20.0%
!! TATTCATAATACAAGTAAGT+AGG + Chr4:57014283-57014302 None:intergenic 20.0%
!! TTTGTAGTTTCATAAAATCA+CGG - Chr4:57015133-57015152 MsG0480021354.01.T01:CDS 20.0%
!!! AATTCATTTTCAAATTTCTG+GGG - Chr4:57014985-57015004 MsG0480021354.01.T01:intron 20.0%
!!! ATTTTGACTTGGATATTTTT+TGG - Chr4:57013485-57013504 MsG0480021354.01.T01:intron 20.0%
!!! CTTGATGTTAATTTGAATTT+CGG - Chr4:57014767-57014786 MsG0480021354.01.T01:intron 20.0%
!!! GTGTTACAAACTTTATTTTT+TGG - Chr4:57016075-57016094 MsG0480021354.01.T01:CDS 20.0%
!!! TATTGTTTTTCTATTCAAAC+CGG - Chr4:57016114-57016133 MsG0480021354.01.T01:CDS 20.0%
!!! TTTTGACTTGGATATTTTTT+GGG - Chr4:57013486-57013505 MsG0480021354.01.T01:intron 20.0%
!!! TTTTTCTGCTTATATGAATT+TGG - Chr4:57012954-57012973 MsG0480021354.01.T01:intron 20.0%
! AAAACAGTAGAAAATCCAAA+CGG + Chr4:57012784-57012803 None:intergenic 25.0%
! AAACATAATTAGCTACGTAA+AGG + Chr4:57015294-57015313 None:intergenic 25.0%
! AAATTAACATCAAGGAAAAC+TGG + Chr4:57014761-57014780 None:intergenic 25.0%
! ACAACAAATGAACAATCATA+TGG - Chr4:57012342-57012361 MsG0480021354.01.T01:intron 25.0%
! ACTTGTATTATGAATAGAGT+TGG - Chr4:57014287-57014306 MsG0480021354.01.T01:intron 25.0%
! CGAAATTCAAATTAACATCA+AGG + Chr4:57014769-57014788 None:intergenic 25.0%
! TATATTTCCAGCTTAAGTTT+GGG - Chr4:57014433-57014452 MsG0480021354.01.T01:intron 25.0%
! TTAAATATAAGACGGGAATT+AGG + Chr4:57015968-57015987 None:intergenic 25.0%
! TTATATTTCCAGCTTAAGTT+TGG - Chr4:57014432-57014451 MsG0480021354.01.T01:intron 25.0%
!! ACAATTTTAGACTTACTAGT+AGG - Chr4:57015511-57015530 MsG0480021354.01.T01:intron 25.0%
!! AGTAAGTCTAAAATTGTTTG+TGG + Chr4:57015508-57015527 None:intergenic 25.0%
!! TATAGTTAGTTTCAGCAAAA+GGG + Chr4:57015261-57015280 None:intergenic 25.0%
!! TGCAACTCATTTTATGTTTA+TGG - Chr4:57014067-57014086 MsG0480021354.01.T01:intron 25.0%
!! TTATAGTTAGTTTCAGCAAA+AGG + Chr4:57015262-57015281 None:intergenic 25.0%
!! TTTTCTTTATGTAGGTTACT+TGG - Chr4:57015040-57015059 MsG0480021354.01.T01:intron 25.0%
!!! ATTCATTTTCAAATTTCTGG+GGG - Chr4:57014986-57015005 MsG0480021354.01.T01:intron 25.0%
!!! GATATTTTTTGGGTTATTTC+AGG - Chr4:57013496-57013515 MsG0480021354.01.T01:intron 25.0%
!!! GATTTTGTTGTAATGTAAGA+AGG - Chr4:57014127-57014146 MsG0480021354.01.T01:intron 25.0%
!!! TTTCACGTTGATAATGTTTT+GGG - Chr4:57013815-57013834 MsG0480021354.01.T01:intron 25.0%
!!! TTTCGATGGATAGTTTTATT+GGG - Chr4:57013198-57013217 MsG0480021354.01.T01:intron 25.0%
!!! TTTTCACGTTGATAATGTTT+TGG - Chr4:57013814-57013833 MsG0480021354.01.T01:intron 25.0%
AAAGAACGAGTTAAAGCAAT+AGG - Chr4:57015791-57015810 MsG0480021354.01.T01:CDS 30.0%
AGTTGTTAAACCTAATTCGT+CGG - Chr4:57012843-57012862 MsG0480021354.01.T01:CDS 30.0%
ATTCCGTTATTTACCTCAAA+AGG + Chr4:57014327-57014346 None:intergenic 30.0%
CTAAGTAATATCTTTGAGTC+AGG - Chr4:57015013-57015032 MsG0480021354.01.T01:intron 30.0%
GATAGTAGACAAAATCAAGA+TGG - Chr4:57014236-57014255 MsG0480021354.01.T01:intron 30.0%
GATTGAAAGAAATACCATCT+CGG + Chr4:57014003-57014022 None:intergenic 30.0%
TCTGCATACACAAAAAAGAT+AGG + Chr4:57013904-57013923 None:intergenic 30.0%
TGATTATTCATCTGAGAGTA+AGG + Chr4:57012490-57012509 None:intergenic 30.0%
TGTGTTAATTAGGTGCATAT+CGG - Chr4:57014486-57014505 MsG0480021354.01.T01:CDS 30.0%
TTAACTTCAACTCACTATTC+TGG + Chr4:57013846-57013865 None:intergenic 30.0%
TTTAGATAGTAATGTCGACA+CGG - Chr4:57013455-57013474 MsG0480021354.01.T01:intron 30.0%
! ACAGAATTCCATAGTTGTTT+TGG - Chr4:57015886-57015905 MsG0480021354.01.T01:CDS 30.0%
! TTCATAGGAGTGTGTTAATT+AGG - Chr4:57014476-57014495 MsG0480021354.01.T01:CDS 30.0%
! TTGTTGTTGACGAGATATTA+TGG + Chr4:57015453-57015472 None:intergenic 30.0%
! TTTAGTTTAGAGTTTGGGAA+TGG - Chr4:57013314-57013333 MsG0480021354.01.T01:intron 30.0%
! TTTGTTGTAATGTAAGAAGG+TGG - Chr4:57014130-57014149 MsG0480021354.01.T01:intron 30.0%
!! ACATTATAGAAGTGTTTCGA+TGG - Chr4:57013184-57013203 MsG0480021354.01.T01:intron 30.0%
!! TTTGGGTTATTTCAGGATTT+TGG - Chr4:57013503-57013522 MsG0480021354.01.T01:intron 30.0%
!! TTTTTGGAAATAAGCATCCT+GGG - Chr4:57015330-57015349 MsG0480021354.01.T01:CDS 30.0%
!!! ATTTCAGGATTTTGGCTAAT+AGG - Chr4:57013511-57013530 MsG0480021354.01.T01:intron 30.0%
!!! GTTTCGATGGATAGTTTTAT+TGG - Chr4:57013197-57013216 MsG0480021354.01.T01:intron 30.0%
!!! TGTGAATGCATGTTTTAGTT+TGG - Chr4:57013672-57013691 MsG0480021354.01.T01:intron 30.0%
!!! TTGCCTTTTGAGGTAAATAA+CGG - Chr4:57014321-57014340 MsG0480021354.01.T01:intron 30.0%
AAAAATGTGGTGAGAGATGT+AGG - Chr4:57014210-57014229 MsG0480021354.01.T01:intron 35.0%
AAAGTTTGTATGACGAAGTG+TGG - Chr4:57014712-57014731 MsG0480021354.01.T01:intron 35.0%
AACGAGTTAAAGCAATAGGT+TGG - Chr4:57015795-57015814 MsG0480021354.01.T01:CDS 35.0%
AAGGGTAAACATGCATTTGA+AGG + Chr4:57015243-57015262 None:intergenic 35.0%
AATCAAGATGGAGTTTGGTT+AGG - Chr4:57014248-57014267 MsG0480021354.01.T01:intron 35.0%
AATCTTCAGTCTTTGAACCT+CGG + Chr4:57015616-57015635 None:intergenic 35.0%
ACACTTCGTCATACAAACTT+TGG + Chr4:57014713-57014732 None:intergenic 35.0%
ACGAGTTAAAGCAATAGGTT+GGG - Chr4:57015796-57015815 MsG0480021354.01.T01:CDS 35.0%
ACTTACGACCAAAACAACTA+TGG + Chr4:57015897-57015916 None:intergenic 35.0%
AGAGTAGTGTTAATGAGAGT+GGG - Chr4:57013096-57013115 MsG0480021354.01.T01:intron 35.0%
AGCAGAAAGGCTCTATAATT+GGG - Chr4:57014355-57014374 MsG0480021354.01.T01:intron 35.0%
ATAGGATTGACAGAATGTTG+CGG + Chr4:57015687-57015706 None:intergenic 35.0%
ATCTGAGAGTAAGGTGAAAT+AGG + Chr4:57012481-57012500 None:intergenic 35.0%
ATCTTGATTGACGATGAGTT+CGG + Chr4:57015177-57015196 None:intergenic 35.0%
ATGAATGTAGATTCCTGACA+CGG - Chr4:57014685-57014704 MsG0480021354.01.T01:intron 35.0%
ATGTAAGAAGGTGGCTAATT+TGG - Chr4:57014139-57014158 MsG0480021354.01.T01:intron 35.0%
CGGAGAAAAACACAATACAA+AGG + Chr4:57014583-57014602 None:intergenic 35.0%
CTTCTATAATGTCTCGTAGT+CGG + Chr4:57013176-57013195 None:intergenic 35.0%
CTTTAACTCGTTCTTTGAGT+TGG + Chr4:57015787-57015806 None:intergenic 35.0%
GACAAAATCAAGATGGAGTT+TGG - Chr4:57014243-57014262 MsG0480021354.01.T01:intron 35.0%
GGTTGTCTTCTTTGAACTTT+AGG - Chr4:57014529-57014548 MsG0480021354.01.T01:intron 35.0%
GTTAGTAGCAGAAATCAAAG+AGG - Chr4:57012418-57012437 MsG0480021354.01.T01:three_prime_UTR 35.0%
GTTGAAGTTAACACAAATGC+AGG - Chr4:57013855-57013874 MsG0480021354.01.T01:intron 35.0%
TAAGCCATCCTTTGATATTG+CGG - Chr4:57013726-57013745 MsG0480021354.01.T01:intron 35.0%
TCAGATGAATAATCAGATCC+CGG - Chr4:57012495-57012514 MsG0480021354.01.T01:three_prime_UTR 35.0%
TCATTCAGAGCTATTAGATG+AGG + Chr4:57015582-57015601 None:intergenic 35.0%
TCTAACAGTGATATTCCGTT+TGG - Chr4:57012766-57012785 MsG0480021354.01.T01:CDS 35.0%
TGAATAGAGTTGGAATCCTA+AGG - Chr4:57014297-57014316 MsG0480021354.01.T01:intron 35.0%
TGATGCATTAAAGTGTGGTA+TGG + Chr4:57012377-57012396 None:intergenic 35.0%
! CAGGTAGCTTTTCTTTATGT+AGG - Chr4:57015032-57015051 MsG0480021354.01.T01:intron 35.0%
! GCCATAATTTTCTTCAACTC+CGG + Chr4:57013353-57013372 None:intergenic 35.0%
! TGAGGTAAATAACGGAATCT+AGG - Chr4:57014329-57014348 MsG0480021354.01.T01:intron 35.0%
! TGTGATGATGCATTAAAGTG+TGG + Chr4:57012382-57012401 None:intergenic 35.0%
!! GTTTTTGGAAATAAGCATCC+TGG - Chr4:57015329-57015348 MsG0480021354.01.T01:CDS 35.0%
!! TCATCTAATAGCTCTGAATG+AGG - Chr4:57015581-57015600 MsG0480021354.01.T01:CDS 35.0%
!!! ACGGATGGTTAATTTTGACT+TGG - Chr4:57013474-57013493 MsG0480021354.01.T01:intron 35.0%
!!! CGGCTTTTAGTTTAGAGTTT+GGG - Chr4:57013309-57013328 MsG0480021354.01.T01:intron 35.0%
AAAACACGCCGCAATATCAA+AGG + Chr4:57013737-57013756 None:intergenic 40.0%
AACACACTCCTATGAACCTA+CGG + Chr4:57014472-57014491 None:intergenic 40.0%
ACAACTTACTTTGTTGCAGG+TGG - Chr4:57013632-57013651 MsG0480021354.01.T01:intron 40.0%
AGCAGAAATCAAAGAGGAAG+TGG - Chr4:57012424-57012443 MsG0480021354.01.T01:three_prime_UTR 40.0%
AGGATAGCCATATCACTGTA+TGG + Chr4:57014563-57014582 None:intergenic 40.0%
AGGGAAACAAATTGGGAACA+TGG - Chr4:57012874-57012893 MsG0480021354.01.T01:intron 40.0%
ATAATCAGATCCCGGTTTCA+CGG - Chr4:57012503-57012522 MsG0480021354.01.T01:three_prime_UTR 40.0%
ATCTTCCAATGCTAAACAGG+CGG + Chr4:57014805-57014824 None:intergenic 40.0%
ATGAGTTCGGCAACAAATCA+TGG + Chr4:57015164-57015183 None:intergenic 40.0%
CAACTTACTTTGTTGCAGGT+GGG - Chr4:57013633-57013652 MsG0480021354.01.T01:intron 40.0%
CACAAATGCAGGTTCAAACA+TGG - Chr4:57013866-57013885 MsG0480021354.01.T01:intron 40.0%
CAGCAGAAAGGCTCTATAAT+TGG - Chr4:57014354-57014373 MsG0480021354.01.T01:intron 40.0%
CATTTCAGAGCTAGAACACA+AGG - Chr4:57013572-57013591 MsG0480021354.01.T01:intron 40.0%
CCAAAATCATGGTAGACTAC+CGG + Chr4:57015101-57015120 None:intergenic 40.0%
CTACTAACAGTTCGCATTTG+TGG + Chr4:57012406-57012425 None:intergenic 40.0%
GAAAGCAGATGTAGAGTAGT+TGG - Chr4:57015352-57015371 MsG0480021354.01.T01:CDS 40.0%
GAATATCACTGTTAGAACGC+CGG + Chr4:57012762-57012781 None:intergenic 40.0%
GAGAGTAAGGTGAAATAGGT+GGG + Chr4:57012477-57012496 None:intergenic 40.0%
GAGAGTAGTGTTAATGAGAG+TGG - Chr4:57013095-57013114 MsG0480021354.01.T01:intron 40.0%
GAGTAGTGTTAATGAGAGTG+GGG - Chr4:57013097-57013116 MsG0480021354.01.T01:intron 40.0%
GCCGGAGTTGAAGAAAATTA+TGG - Chr4:57013349-57013368 MsG0480021354.01.T01:intron 40.0%
GCTGTTACCATACAGTGATA+TGG - Chr4:57014553-57014572 MsG0480021354.01.T01:intron 40.0%
GGAACTTCAACTCACTATTC+TGG + Chr4:57013949-57013968 None:intergenic 40.0%
GGTGAAGAGGGAAACAAATT+GGG - Chr4:57012867-57012886 MsG0480021354.01.T01:intron 40.0%
TAAGTTTGGGTGTTTGGTCA+AGG - Chr4:57014446-57014465 MsG0480021354.01.T01:intron 40.0%
TACCTCAAAAGGCAATCCTT+AGG + Chr4:57014316-57014335 None:intergenic 40.0%
TATGGAATGAGCATTACAGC+CGG - Chr4:57014911-57014930 MsG0480021354.01.T01:CDS 40.0%
TGAGAGTAAGGTGAAATAGG+TGG + Chr4:57012478-57012497 None:intergenic 40.0%
TGCACAACTTACTTTGTTGC+AGG - Chr4:57013629-57013648 MsG0480021354.01.T01:intron 40.0%
TGCTGTTGTTGGAACATCAT+AGG + Chr4:57015705-57015724 None:intergenic 40.0%
TGGTGAAGAGGGAAACAAAT+TGG - Chr4:57012866-57012885 MsG0480021354.01.T01:intron 40.0%
TGGTGATAATCGCGATGATT+TGG - Chr4:57013016-57013035 MsG0480021354.01.T01:intron 40.0%
TGTATGCAGAGAGATTCAGT+TGG - Chr4:57013914-57013933 MsG0480021354.01.T01:intron 40.0%
TGTTAAACCTAATTCGTCGG+TGG - Chr4:57012846-57012865 MsG0480021354.01.T01:CDS 40.0%
TTGGGAATGGTGAGTTTAGT+GGG - Chr4:57013327-57013346 MsG0480021354.01.T01:intron 40.0%
TTTGGGAATGGTGAGTTTAG+TGG - Chr4:57013326-57013345 MsG0480021354.01.T01:intron 40.0%
! AAGTTGTGCAGAAAGTGTAG+TGG + Chr4:57013619-57013638 None:intergenic 40.0%
! ATCCTAAGGATTGCCTTTTG+AGG - Chr4:57014311-57014330 MsG0480021354.01.T01:intron 40.0%
! ATTTTCTCGGCGGTAAAGAA+GGG + Chr4:57012735-57012754 None:intergenic 40.0%
! CCTGTTTAGCATTGGAAGAT+GGG - Chr4:57014805-57014824 MsG0480021354.01.T01:intron 40.0%
! CGGCGTGTTTTGTAAAATTG+CGG - Chr4:57013746-57013765 MsG0480021354.01.T01:intron 40.0%
! CGTAGCTTTTGCCAAAATCA+TGG + Chr4:57015112-57015131 None:intergenic 40.0%
! CGTGTTTTGTAAAATTGCGG+TGG - Chr4:57013749-57013768 MsG0480021354.01.T01:intron 40.0%
! GTAATGGAATCAGCAAATCC+CGG + Chr4:57014933-57014952 None:intergenic 40.0%
! GTTAAAGCAATAGGTTGGGT+TGG - Chr4:57015800-57015819 MsG0480021354.01.T01:CDS 40.0%
! TTGGGAACATGGTAATGTAG+AGG - Chr4:57012885-57012904 MsG0480021354.01.T01:intron 40.0%
!! GAAACTTGCTGAGATTGCTA+TGG - Chr4:57013379-57013398 MsG0480021354.01.T01:intron 40.0%
!! TAGGTTACTTGGTGCATGTT+TGG - Chr4:57015051-57015070 MsG0480021354.01.T01:CDS 40.0%
!!! GCGGCTTTTAGTTTAGAGTT+TGG - Chr4:57013308-57013327 MsG0480021354.01.T01:intron 40.0%
!!! GTAAGAGTTGCTGCTGTTTT+TGG - Chr4:57015314-57015333 MsG0480021354.01.T01:CDS 40.0%
!!! GTTGGTTTTCTGTTCGCATT+TGG - Chr4:57015370-57015389 MsG0480021354.01.T01:CDS 40.0%
AAATAGGTGGGATCTGGTGT+GGG + Chr4:57012465-57012484 None:intergenic 45.0%
AAGATTCGCGAAACGTGCAA+GGG + Chr4:57012627-57012646 None:intergenic 45.0%
AAGGTGAAATAGGTGGGATC+TGG + Chr4:57012471-57012490 None:intergenic 45.0%
AAGGTGGCTAATTTGGCATG+CGG - Chr4:57014146-57014165 MsG0480021354.01.T01:intron 45.0%
AATTTGGCATGCGGCGATTT+GGG - Chr4:57014155-57014174 MsG0480021354.01.T01:intron 45.0%
ACAAACTTTGGTACCGTGTC+AGG + Chr4:57014701-57014720 None:intergenic 45.0%
ACTTTGTGACCGAGCTAGAT+AGG + Chr4:57015933-57015952 None:intergenic 45.0%
AGTGGAACGAAGACTAATGG+TGG - Chr4:57013050-57013069 MsG0480021354.01.T01:intron 45.0%
ATACTATGCAGAGGAGGGAA+GGG - Chr4:57013120-57013139 MsG0480021354.01.T01:intron 45.0%
ATGGAATGAGCATTACAGCC+GGG - Chr4:57014912-57014931 MsG0480021354.01.T01:CDS 45.0%
ATTGCTACAGCTGAGCTGAA+TGG - Chr4:57015633-57015652 MsG0480021354.01.T01:CDS 45.0%
CAGTGAGATTGGCAGAATTC+CGG - Chr4:57015079-57015098 MsG0480021354.01.T01:CDS 45.0%
CATCAACAACAGCAGCAGAA+TGG - Chr4:57015756-57015775 MsG0480021354.01.T01:CDS 45.0%
CCAAACACCCAAACTTAAGC+TGG + Chr4:57014443-57014462 None:intergenic 45.0%
CCAGCTTAAGTTTGGGTGTT+TGG - Chr4:57014440-57014459 MsG0480021354.01.T01:intron 45.0%
CCCATCTTCCAATGCTAAAC+AGG + Chr4:57014808-57014827 None:intergenic 45.0%
CCTTCAATCCATGGAACAAC+AGG - Chr4:57013970-57013989 MsG0480021354.01.T01:intron 45.0%
CGATGATAAAACGCAGCTAC+TGG - Chr4:57012996-57013015 MsG0480021354.01.T01:intron 45.0%
GAGTCGAGCGAGAAAAAAGA+CGG + Chr4:57012589-57012608 None:intergenic 45.0%
GATAGTAATGTCGACACGGA+TGG - Chr4:57013459-57013478 MsG0480021354.01.T01:intron 45.0%
GTAGGACTTGTACTATGCGA+CGG + Chr4:57012538-57012557 None:intergenic 45.0%
GTTGATGTCGCCTGGTAATT+CGG - Chr4:57013271-57013290 MsG0480021354.01.T01:intron 45.0%
GTTTGGATCAGCAGTGAGAT+TGG - Chr4:57015068-57015087 MsG0480021354.01.T01:CDS 45.0%
TAATTCGTCGGTGGTGAAGA+GGG - Chr4:57012855-57012874 MsG0480021354.01.T01:intron 45.0%
TAATTTGGCATGCGGCGATT+TGG - Chr4:57014154-57014173 MsG0480021354.01.T01:intron 45.0%
TACTCTACATCTGCTTTCCC+AGG + Chr4:57015350-57015369 None:intergenic 45.0%
TGCGGAATCATGCAGTTAGA+AGG + Chr4:57015669-57015688 None:intergenic 45.0%
TTAAGCCGCCTGTTTAGCAT+TGG - Chr4:57014797-57014816 MsG0480021354.01.T01:intron 45.0%
TTAGTCCCTCACGACAAAAC+CGG + Chr4:57016136-57016155 None:intergenic 45.0%
TTCGCAATGCCTATCTAGCT+CGG - Chr4:57015921-57015940 MsG0480021354.01.T01:CDS 45.0%
TTGAGAGAGTGATCGTGTGT+GGG + Chr4:57012566-57012585 None:intergenic 45.0%
TTGATGTCGCCTGGTAATTC+GGG - Chr4:57013272-57013291 MsG0480021354.01.T01:intron 45.0%
TTGCTACAGCTGAGCTGAAT+GGG - Chr4:57015634-57015653 MsG0480021354.01.T01:CDS 45.0%
! CCGGTAGTCTACCATGATTT+TGG - Chr4:57015098-57015117 MsG0480021354.01.T01:CDS 45.0%
! CCTGTTGTTCCATGGATTGA+AGG + Chr4:57013973-57013992 None:intergenic 45.0%
! GAAGGGAATAAGAGAAGTGC+AGG - Chr4:57013137-57013156 MsG0480021354.01.T01:intron 45.0%
! GAGTTTTGCCTGTTGTTCCA+TGG + Chr4:57013981-57014000 None:intergenic 45.0%
! GATTTTCTCGGCGGTAAAGA+AGG + Chr4:57012736-57012755 None:intergenic 45.0%
! GCCTGTTTAGCATTGGAAGA+TGG - Chr4:57014804-57014823 MsG0480021354.01.T01:intron 45.0%
! GTGCATATCGGTTGTTCTCA+GGG - Chr4:57014498-57014517 MsG0480021354.01.T01:CDS 45.0%
! GTTGTTCCATGGATTGAAGG+CGG + Chr4:57013970-57013989 None:intergenic 45.0%
! TGCTGTTGTTGTTGATGCTG+CGG + Chr4:57015735-57015754 None:intergenic 45.0%
!! AAAGCAATAGGTTGGGTTGG+AGG - Chr4:57015803-57015822 MsG0480021354.01.T01:CDS 45.0%
!! AGCATTGGAAGATGGGTTGT+AGG - Chr4:57014812-57014831 MsG0480021354.01.T01:intron 45.0%
!! GAAGGGTTTCTAGCAGCAAA+CGG + Chr4:57012718-57012737 None:intergenic 45.0%
!! TCAAACCGGTTTTGTCGTGA+GGG - Chr4:57016128-57016147 MsG0480021354.01.T01:CDS 45.0%
!! TTCAAACCGGTTTTGTCGTG+AGG - Chr4:57016127-57016146 MsG0480021354.01.T01:CDS 45.0%
ACAACTTCCCTTCCTCTCAG+CGG + Chr4:57012829-57012848 None:intergenic 50.0%
AGAGTGGGGATACTATGCAG+AGG - Chr4:57013111-57013130 MsG0480021354.01.T01:intron 50.0%
AGTGACGTCACGATCTTCCA+TGG + Chr4:57012677-57012696 None:intergenic 50.0%
CAACAGGCAAAACTCCGAGA+TGG - Chr4:57013986-57014005 MsG0480021354.01.T01:intron 50.0%
CACGCCGCAATATCAAAGGA+TGG + Chr4:57013733-57013752 None:intergenic 50.0%
CTAATTCGTCGGTGGTGAAG+AGG - Chr4:57012854-57012873 MsG0480021354.01.T01:CDS 50.0%
CTCTTCACCACCGACGAATT+AGG + Chr4:57012856-57012875 None:intergenic 50.0%
CTTCCTCTCAGCGGAATCAA+CGG + Chr4:57012820-57012839 None:intergenic 50.0%
GAAATAGGTGGGATCTGGTG+TGG + Chr4:57012466-57012485 None:intergenic 50.0%
GAAGAAATCGTCGTTGTCGC+CGG - Chr4:57012909-57012928 MsG0480021354.01.T01:intron 50.0%
GAAGATTCGCGAAACGTGCA+AGG + Chr4:57012628-57012647 None:intergenic 50.0%
GAAGTTCCGCCTTCAATCCA+TGG - Chr4:57013961-57013980 MsG0480021354.01.T01:intron 50.0%
GATACTATGCAGAGGAGGGA+AGG - Chr4:57013119-57013138 MsG0480021354.01.T01:intron 50.0%
GATTTGGACAGTAGAGCGAG+TGG - Chr4:57013032-57013051 MsG0480021354.01.T01:intron 50.0%
GCGAGTGGAACGAAGACTAA+TGG - Chr4:57013047-57013066 MsG0480021354.01.T01:intron 50.0%
GGAATCTAGGAGCAGCAGAA+AGG - Chr4:57014342-57014361 MsG0480021354.01.T01:intron 50.0%
GGATCATGCTGACGTTTCCA+TGG - Chr4:57012657-57012676 MsG0480021354.01.T01:CDS 50.0%
GTACTATGCGACGGCATTTG+CGG + Chr4:57012529-57012548 None:intergenic 50.0%
GTATCGCATCTTGCGCTCTT+TGG + Chr4:57013553-57013572 None:intergenic 50.0%
GTTGAGAGAGTGATCGTGTG+TGG + Chr4:57012567-57012586 None:intergenic 50.0%
GTTGTTCTCAGGGAGTCTCT+TGG - Chr4:57014508-57014527 MsG0480021354.01.T01:CDS 50.0%
TACCGCCGAGAAAATCTCAC+CGG - Chr4:57012740-57012759 MsG0480021354.01.T01:CDS 50.0%
TCGTCCACAACTTCACCTTC+CGG + Chr4:57012931-57012950 None:intergenic 50.0%
TGATGTCGCCTGGTAATTCG+GGG - Chr4:57013273-57013292 MsG0480021354.01.T01:intron 50.0%
TGCTACAGCTGAGCTGAATG+GGG - Chr4:57015635-57015654 MsG0480021354.01.T01:CDS 50.0%
TGGGGATACTATGCAGAGGA+GGG - Chr4:57013115-57013134 MsG0480021354.01.T01:intron 50.0%
TTGCTATGGCTGATCCGAAG+CGG - Chr4:57013393-57013412 MsG0480021354.01.T01:intron 50.0%
! GAACGCCGGTGAGATTTTCT+CGG + Chr4:57012748-57012767 None:intergenic 50.0%
! GAATGGTGAGTTTAGTGGGC+CGG - Chr4:57013331-57013350 MsG0480021354.01.T01:intron 50.0%
! GGGAATAAGAGAAGTGCAGG+AGG - Chr4:57013140-57013159 MsG0480021354.01.T01:intron 50.0%
! GGTGCATATCGGTTGTTCTC+AGG - Chr4:57014497-57014516 MsG0480021354.01.T01:CDS 50.0%
! GTTGATTCCGCTGAGAGGAA+GGG - Chr4:57012819-57012838 MsG0480021354.01.T01:CDS 50.0%
!!! GGTCGCGTCGCAGTTTTTTT+GGG - Chr4:57014376-57014395 MsG0480021354.01.T01:intron 50.0%
AAATCGTCGTTGTCGCCGGA+AGG - Chr4:57012913-57012932 MsG0480021354.01.T01:intron 55.0%
AACGTCAGCATGATCCGACG+TGG + Chr4:57012653-57012672 None:intergenic 55.0%
AAGCAGCTTTCACGTCAGCG+TGG + Chr4:57013779-57013798 None:intergenic 55.0%
ATCAACCCTCCAGGTGAAGG+CGG + Chr4:57013257-57013276 None:intergenic 55.0%
ATCTGGTGTGGGTGAGATGG+TGG + Chr4:57012454-57012473 None:intergenic 55.0%
CAAACTGCTGCTGTCTGTGC+GGG - Chr4:57014408-57014427 MsG0480021354.01.T01:intron 55.0%
CTAGCAGCAAACGGAGGCAA+CGG + Chr4:57012709-57012728 None:intergenic 55.0%
GACATCAACCCTCCAGGTGA+AGG + Chr4:57013260-57013279 None:intergenic 55.0%
GAGAGTGATCGTGTGTGGGA+AGG + Chr4:57012562-57012581 None:intergenic 55.0%
GATGTCGCCTGGTAATTCGG+GGG - Chr4:57013274-57013293 MsG0480021354.01.T01:intron 55.0%
GCAAACTGCTGCTGTCTGTG+CGG - Chr4:57014407-57014426 MsG0480021354.01.T01:intron 55.0%
GCGGATGCTGATGCTGTTGT+TGG + Chr4:57015716-57015735 None:intergenic 55.0%
GGTCAAGGCCGTAGGTTCAT+AGG - Chr4:57014461-57014480 MsG0480021354.01.T01:CDS 55.0%
GTGGGGATACTATGCAGAGG+AGG - Chr4:57013114-57013133 MsG0480021354.01.T01:intron 55.0%
TCCGCCTGTTACGTCTTGTG+CGG - Chr4:57014599-57014618 MsG0480021354.01.T01:intron 55.0%
TCGCGAATCTTCCTCCACGT+CGG - Chr4:57012636-57012655 MsG0480021354.01.T01:exon 55.0%
TGCTATGGCTGATCCGAAGC+GGG - Chr4:57013394-57013413 MsG0480021354.01.T01:intron 55.0%
TGGCTTCAGTCTGCAGAGTC+TGG + Chr4:57013599-57013618 None:intergenic 55.0%
TTCCCATCCCCCGAATTACC+AGG + Chr4:57013284-57013303 None:intergenic 55.0%
TTCGGGGGATGGGAATTCAG+CGG - Chr4:57013289-57013308 MsG0480021354.01.T01:intron 55.0%
TTGAAGATGCCGCCTTCACC+TGG - Chr4:57013245-57013264 MsG0480021354.01.T01:intron 55.0%
! GATCGTGTGTGGGAAGGTGT+AGG + Chr4:57012556-57012575 None:intergenic 55.0%
!! CGTTGATTCCGCTGAGAGGA+AGG - Chr4:57012818-57012837 MsG0480021354.01.T01:CDS 55.0%
!! GGGTTTCTAGCAGCAAACGG+AGG + Chr4:57012715-57012734 None:intergenic 55.0%
!!! GGGTCGCGTCGCAGTTTTTT+TGG - Chr4:57014375-57014394 MsG0480021354.01.T01:intron 55.0%
AACGTGCAAGGGCTGAGAGG+CGG + Chr4:57012616-57012635 None:intergenic 60.0%
AAGATGCCGCCTTCACCTGG+AGG - Chr4:57013248-57013267 MsG0480021354.01.T01:intron 60.0%
AGATGCCGCCTTCACCTGGA+GGG - Chr4:57013249-57013268 MsG0480021354.01.T01:intron 60.0%
CAGCACCTCTTAGCCCGCTT+CGG + Chr4:57013410-57013429 None:intergenic 60.0%
CCACCCGCACAAGACGTAAC+AGG + Chr4:57014606-57014625 None:intergenic 60.0%
CCCGCACAAGACGTAACAGG+CGG + Chr4:57014603-57014622 None:intergenic 60.0%
CCGCCTGTTACGTCTTGTGC+GGG - Chr4:57014600-57014619 MsG0480021354.01.T01:intron 60.0%
CCTCTCAGCGGAATCAACGG+CGG + Chr4:57012817-57012836 None:intergenic 60.0%
CCTGTTACGTCTTGTGCGGG+TGG - Chr4:57014603-57014622 MsG0480021354.01.T01:intron 60.0%
CGAAACGTGCAAGGGCTGAG+AGG + Chr4:57012619-57012638 None:intergenic 60.0%
CGCCTGGTAATTCGGGGGAT+GGG - Chr4:57013279-57013298 MsG0480021354.01.T01:intron 60.0%
GCATTTGCGGCCGTGAAACC+GGG + Chr4:57012516-57012535 None:intergenic 60.0%
GGCATTTGCGGCCGTGAAAC+CGG + Chr4:57012517-57012536 None:intergenic 60.0%
GGGATCTGGTGTGGGTGAGA+TGG + Chr4:57012457-57012476 None:intergenic 60.0%
GGGTGTTTGGTCAAGGCCGT+AGG - Chr4:57014453-57014472 MsG0480021354.01.T01:intron 60.0%
GTCAGCATGATCCGACGTGG+AGG + Chr4:57012650-57012669 None:intergenic 60.0%
GTCGCCGGAAGGTGAAGTTG+TGG - Chr4:57012924-57012943 MsG0480021354.01.T01:intron 60.0%
TCGCCTGGTAATTCGGGGGA+TGG - Chr4:57013278-57013297 MsG0480021354.01.T01:intron 60.0%
! CGCCGGTGAGATTTTCTCGG+CGG + Chr4:57012745-57012764 None:intergenic 60.0%
! GAATGAGGCGCTTACTGCCG+AGG - Chr4:57015596-57015615 MsG0480021354.01.T01:CDS 60.0%
! TGGGTTGGAGGTCGTGCAGA+CGG - Chr4:57015815-57015834 MsG0480021354.01.T01:CDS 60.0%
!! CTGATCCGAAGCGGGCTAAG+AGG - Chr4:57013402-57013421 MsG0480021354.01.T01:intron 60.0%
CCAGGCGACATCAACCCTCC+AGG + Chr4:57013266-57013285 None:intergenic 65.0%
!! CCGCCGTTGATTCCGCTGAG+AGG - Chr4:57012814-57012833 MsG0480021354.01.T01:CDS 65.0%
!! CCTGGAGGGTTGATGTCGCC+TGG - Chr4:57013263-57013282 MsG0480021354.01.T01:intron 65.0%
Chromosome Type Strat End Strand Name
Chr4 gene 57012304 57016161 57012304 ID=MsG0480021354.01;Name=MsG0480021354.01
Chr4 mRNA 57012304 57016161 57012304 ID=MsG0480021354.01.T01;Parent=MsG0480021354.01;Name=MsG0480021354.01.T01;_AED=0.48;_eAED=0.48;_QI=0|0.8|0.66|1|0.8|0.66|6|312|493
Chr4 exon 57012304 57012324 57012304 ID=MsG0480021354.01.T01:exon:19198;Parent=MsG0480021354.01.T01
Chr4 exon 57012362 57012873 57012362 ID=MsG0480021354.01.T01:exon:19197;Parent=MsG0480021354.01.T01
Chr4 exon 57014458 57014542 57014458 ID=MsG0480021354.01.T01:exon:19196;Parent=MsG0480021354.01.T01
Chr4 exon 57014815 57014947 57014815 ID=MsG0480021354.01.T01:exon:19195;Parent=MsG0480021354.01.T01
Chr4 exon 57015042 57015453 57015042 ID=MsG0480021354.01.T01:exon:19194;Parent=MsG0480021354.01.T01
Chr4 exon 57015531 57016161 57015531 ID=MsG0480021354.01.T01:exon:19193;Parent=MsG0480021354.01.T01
Chr4 CDS 57015531 57016161 57015531 ID=MsG0480021354.01.T01:cds;Parent=MsG0480021354.01.T01
Chr4 CDS 57015042 57015453 57015042 ID=MsG0480021354.01.T01:cds;Parent=MsG0480021354.01.T01
Chr4 CDS 57014815 57014947 57014815 ID=MsG0480021354.01.T01:cds;Parent=MsG0480021354.01.T01
Chr4 CDS 57014458 57014542 57014458 ID=MsG0480021354.01.T01:cds;Parent=MsG0480021354.01.T01
Chr4 CDS 57012653 57012873 57012653 ID=MsG0480021354.01.T01:cds;Parent=MsG0480021354.01.T01
Chr4 three_prime_UTR 57012362 57012652 57012362 ID=MsG0480021354.01.T01:three_prime_utr;Parent=MsG0480021354.01.T01
Chr4 three_prime_UTR 57012304 57012324 57012304 ID=MsG0480021354.01.T01:three_prime_utr;Parent=MsG0480021354.01.T01
Gene Sequence

>MsG0480021354.01.T01

ATGGAAGATAGTGAAGCAGCTTCATCTTTCATGAAACAACAACAAATGAACAATCATATGGAACAATTAACCATACCACACTTTAATGCATCATCACAACCACAAATGCGAACTGTTAGTAGCAGAAATCAAAGAGGAAGTGGTATACCACCATCTCACCCACACCAGATCCCACCTATTTCACCTTACTCTCAGATGAATAATCAGATCCCGGTTTCACGGCCGCAAATGCCGTCGCATAGTACAAGTCCTACACCTTCCCACACACGATCACTCTCTCAACCGTCTTTTTTCTCGCTCGACTCTCTTCCGCCTCTCAGCCCTTGCACGTTTCGCGAATCTTCCTCCACGTCGGATCATGCTGACGTTTCCATGGAAGATCGTGACGTCACTTCTCATTCTCCGTTGCCTCCGTTTGCTGCTAGAAACCCTTCTTTACCGCCGAGAAAATCTCACCGGCGTTCTAACAGTGATATTCCGTTTGGATTTTCTACTGTTTTGCAGTCTTCGCCGCCGTTGATTCCGCTGAGAGGAAGGGAAGTTGTTAAACCTAATTCGTCGGTGGTGAAGAGGGAAACAAATTGGGAACATGGTAATGTAGAGGAGAAGAAATCGTCGTTGTCGCCGGAAGCTACTGGTGATAATCGCGATGATTTGGACAGTAGAGCGAGTGGAACGAAGACTAATGGTGGTGATAGTAGTGATAATGAAGCTGAGAGTAGTGTTAATGAGAGTGGGGATACTATGCAGAGGAGGGAAGGGAATAAGAGAAGTGCAGGAGGTGATATTGCACCGACTACGAGACATTATAGAAGTGTTTCGATGGATAGTTTTATTGGGAAGTTGAATTTCAATGACGAGTCTTTGAAGATGCCGCCTTCACCTGGAGGGTTGATGTCGCCTGGTAATTCGGGGGATGGGAATTCAGCGGCTTTTAGTTTAGAGTTTGGGAATGGTGAGTTTAGTGGGCCGGAGTTGAAGAAAATTATGGCTAATGAGAAACTTGCTGAGATTGCTATGGCTGATCCGAAGCGGGCTAAGAGGATTTTGGCTAATAGGCAATCAGCTGCGCGTTCCAAAGAGCGCAAGATGCGATACATTTCAGAGCTAGAACACAAGGTCCAGACTCTGCAGACTGAAGCCACTACACTTTCTGCACAACTTACTTTGTTGCAGAGAGATTCAGTTGGACTCACTAACCAGAATAGTGAGTTGAAGTTCCGCCTTCAATCCATGGAACAACAGGCAAAACTCCGAGATGCTCTGAATGAGGCGCTTACTGCCGAGGTTCAAAGACTGAAGATTGCTACAGCTGAGCTGAATGGGGAGTCACTTCCTTCTAACTGCATGATTCCGCAACATTCTGTCAATCCTATGATGTTCCAACAACAGCATCAGCATCCGCAGCATCAACAACAACAGCAGCATCAACAACAGCAGCAGAATGGTAATGCCAACTCAAAGAACGAGTTAAAGCAATAG
Protein sequence

>MsG0480021354.01.T01

MEDSEAASSFMKQQQMNNHMEQLTIPHFNASSQPQMRTVSSRNQRGSGIPPSHPHQIPPISPYSQMNNQIPVSRPQMPSHSTSPTPSHTRSLSQPSFFSLDSLPPLSPCTFRESSSTSDHADVSMEDRDVTSHSPLPPFAARNPSLPPRKSHRRSNSDIPFGFSTVLQSSPPLIPLRGREVVKPNSSVVKRETNWEHGNVEEKKSSLSPEATGDNRDDLDSRASGTKTNGGDSSDNEAESSVNESGDTMQRREGNKRSAGGDIAPTTRHYRSVSMDSFIGKLNFNDESLKMPPSPGGLMSPGNSGDGNSAAFSLEFGNGEFSGPELKKIMANEKLAEIAMADPKRAKRILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNSELKFRLQSMEQQAKLRDALNEALTAEVQRLKIATAELNGESLPSNCMIPQHSVNPMMFQQQHQHPQHQQQQQHQQQQQNGNANSKNELKQ*