Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480021394.01.T01 | XP_003607179.1 | 95.745 | 376 | 16 | 0 | 1 | 376 | 1 | 376 | 0 | 759 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480021394.01.T01 | A0A1C9CX66 | 43.396 | 371 | 199 | 7 | 6 | 372 | 27 | 390 | 3.32E-99 | 302 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480021394.01.T01 | G7JMD3 | 95.745 | 376 | 16 | 0 | 1 | 376 | 1 | 376 | 0.0 | 759 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0180003320.01 | MsG0480021394.01 | 0.805609 | 1.229202e-49 | 6.531642e-47 |
| MsG0480021394.01 | MsG0480022308.01 | 0.801233 | 9.919571e-49 | 4.712882e-46 |
| MsG0480021394.01 | MsG0480022430.01 | 0.932685 | 5.876264e-95 | 3.995245e-90 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480021394.01.T01 | MTR_4g073090 | 95.745 | 376 | 16 | 0 | 1 | 376 | 1 | 376 | 0.0 | 759 |
| MsG0480021394.01.T01 | MTR_4g121570 | 83.777 | 376 | 61 | 0 | 1 | 376 | 1 | 376 | 0.0 | 679 |
| MsG0480021394.01.T01 | MTR_4g121590 | 81.117 | 376 | 71 | 0 | 1 | 376 | 1 | 376 | 0.0 | 654 |
| MsG0480021394.01.T01 | MTR_3g102770 | 43.127 | 371 | 199 | 7 | 6 | 372 | 27 | 389 | 1.86e-97 | 295 |
| MsG0480021394.01.T01 | MTR_3g102730 | 43.200 | 375 | 194 | 9 | 6 | 372 | 27 | 390 | 3.05e-97 | 295 |
| MsG0480021394.01.T01 | MTR_3g013890 | 42.933 | 375 | 195 | 9 | 6 | 372 | 27 | 390 | 1.36e-96 | 293 |
| MsG0480021394.01.T01 | MTR_1g018610 | 42.246 | 374 | 205 | 7 | 2 | 372 | 58 | 423 | 3.84e-96 | 293 |
| MsG0480021394.01.T01 | MTR_3g102760 | 42.091 | 373 | 203 | 8 | 5 | 372 | 26 | 390 | 4.48e-96 | 291 |
| MsG0480021394.01.T01 | MTR_1g018590 | 41.622 | 370 | 206 | 6 | 6 | 372 | 32 | 394 | 5.48e-95 | 289 |
| MsG0480021394.01.T01 | MTR_1g018580 | 39.189 | 370 | 191 | 6 | 6 | 372 | 26 | 364 | 2.25e-85 | 263 |
| MsG0480021394.01.T01 | MTR_3g463660 | 36.412 | 379 | 221 | 11 | 4 | 372 | 7 | 375 | 9.54e-70 | 224 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480021394.01.T01 | AT4G24220 | 41.779 | 371 | 203 | 8 | 6 | 372 | 27 | 388 | 5.68e-95 | 289 |
| MsG0480021394.01.T01 | AT4G24220 | 41.779 | 371 | 203 | 8 | 6 | 372 | 26 | 387 | 6.27e-95 | 289 |
| MsG0480021394.01.T01 | AT5G58750 | 32.552 | 384 | 235 | 12 | 3 | 373 | 6 | 378 | 8.92e-59 | 195 |
| MsG0480021394.01.T01 | AT5G58750 | 32.552 | 384 | 235 | 12 | 3 | 373 | 14 | 386 | 1.34e-58 | 195 |
Find 113 sgRNAs with CRISPR-Local
Find 117 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAAGCACGTAATAGAAATT+TGG | 0.168674 | 4:+57366386 | None:intergenic |
| AAGAAGTCACCCACCTCTTT+TGG | 0.213578 | 4:-57366637 | MsG0480021394.01.T01:CDS |
| CGTTTAAGAGTATCAGATTC+TGG | 0.234355 | 4:-57365806 | MsG0480021394.01.T01:CDS |
| GACTTGATTGTCGAGGAATA+TGG | 0.263491 | 4:-57365957 | MsG0480021394.01.T01:CDS |
| TTTCCTTCTTCCATCCTTGA+TGG | 0.275110 | 4:-57366722 | MsG0480021394.01.T01:CDS |
| TTCCGGTTTGGAGTGTTATA+TGG | 0.277420 | 4:+57366507 | None:intergenic |
| GCTGCCATATGTCGCCATTT+AGG | 0.280720 | 4:-57366248 | MsG0480021394.01.T01:CDS |
| ATGAACAAGAGTAAGGATTA+TGG | 0.289410 | 4:-57365849 | MsG0480021394.01.T01:CDS |
| CATCGATCCTCTATCATAAT+AGG | 0.292341 | 4:-57366320 | MsG0480021394.01.T01:CDS |
| AAAAGAGGTGGGTGACTTCT+TGG | 0.296908 | 4:+57366639 | None:intergenic |
| GGAAGCAATTTCCTGCAATT+TGG | 0.303114 | 4:+57365923 | None:intergenic |
| AACGAAAAGGTAATCCTAAA+TGG | 0.324790 | 4:+57366234 | None:intergenic |
| TGCGTGATAAGGGTGAGATT+TGG | 0.330513 | 4:-57365980 | MsG0480021394.01.T01:CDS |
| ATCAGGCTGCTTCAAGGCTT+TGG | 0.337780 | 4:+57366802 | None:intergenic |
| GCACTGGTGGTTGGAGTAAC+AGG | 0.353312 | 4:-57366845 | MsG0480021394.01.T01:CDS |
| CAAGCACGTAATAGAAATTT+GGG | 0.353974 | 4:+57366387 | None:intergenic |
| GGAGGCCCATGGAAAGTTTA+CGG | 0.363918 | 4:-57366773 | MsG0480021394.01.T01:CDS |
| GCGTGATAAGGGTGAGATTT+GGG | 0.371349 | 4:-57365979 | MsG0480021394.01.T01:CDS |
| CTTCTTCATCACCTACAAAC+TGG | 0.385026 | 4:+57366606 | None:intergenic |
| CAAGGAAGAGTTTGATTTGG+TGG | 0.392348 | 4:-57366009 | MsG0480021394.01.T01:CDS |
| TGGGTCACGTTCCAGTTTGT+AGG | 0.396862 | 4:-57366617 | MsG0480021394.01.T01:CDS |
| TGGGTGACTTCTTGGGATAT+TGG | 0.406438 | 4:+57366647 | None:intergenic |
| ACCCATGTAATGTTTGGTTC+CGG | 0.408112 | 4:+57366490 | None:intergenic |
| AAGCAGCCTGATTGTCTTGG+AGG | 0.408544 | 4:-57366791 | MsG0480021394.01.T01:CDS |
| TCCCAAGTGTACCTGTTTCC+TGG | 0.408987 | 4:+57366209 | None:intergenic |
| TGTAATGTTTGGTTCCGGTT+TGG | 0.409989 | 4:+57366495 | None:intergenic |
| TGTTTCGTGGCATATAAGTT+TGG | 0.415707 | 4:+57366442 | None:intergenic |
| ACTTGATTGTCGAGGAATAT+GGG | 0.422566 | 4:-57365956 | MsG0480021394.01.T01:CDS |
| CTCGCCGCTCCGCCGACGGT+TGG | 0.426749 | 4:-57366745 | MsG0480021394.01.T01:CDS |
| CGTTACATCCTATGCACCTT+CGG | 0.429287 | 4:-57366357 | MsG0480021394.01.T01:CDS |
| TCCGGTTTGGAGTGTTATAT+GGG | 0.429734 | 4:+57366508 | None:intergenic |
| TGAAACTCAAACCGCAGAAC+TGG | 0.435621 | 4:+57365885 | None:intergenic |
| GACCGAACCGGATCATGAAC+TGG | 0.436608 | 4:+57366467 | None:intergenic |
| TGAACAAGAGTAAGGATTAT+GGG | 0.445952 | 4:-57365848 | MsG0480021394.01.T01:CDS |
| AACCGGAACCAAACATTACA+TGG | 0.447203 | 4:-57366492 | MsG0480021394.01.T01:CDS |
| TGACAAGGAAGAGTTTGATT+TGG | 0.447305 | 4:-57366012 | MsG0480021394.01.T01:CDS |
| CATGGGCCTCCAAGACAATC+AGG | 0.450062 | 4:+57366785 | None:intergenic |
| TTGAAGCAGCCTGATTGTCT+TGG | 0.454331 | 4:-57366794 | MsG0480021394.01.T01:CDS |
| AAGACAATCAGGCTGCTTCA+AGG | 0.459742 | 4:+57366796 | None:intergenic |
| AAAGAGGTGGGTGACTTCTT+GGG | 0.459855 | 4:+57366640 | None:intergenic |
| AACTGGCACCGTTGCTTCAA+AGG | 0.459967 | 4:+57365902 | None:intergenic |
| GCAGCTCGCCGCTCCGCCGA+CGG | 0.460373 | 4:-57366749 | MsG0480021394.01.T01:CDS |
| GGTGGAGTTAATGCGTGATA+AGG | 0.462624 | 4:-57365991 | MsG0480021394.01.T01:CDS |
| GCTTCATAAGACCAAATTGC+AGG | 0.471225 | 4:-57365934 | MsG0480021394.01.T01:CDS |
| ATAAGTTTGGTGGACCGAAC+CGG | 0.472714 | 4:+57366455 | None:intergenic |
| CGTTTGTGCAATTAAACGCT+TGG | 0.475175 | 4:+57366108 | None:intergenic |
| GTTTAAGAGTATCAGATTCT+GGG | 0.476243 | 4:-57365805 | MsG0480021394.01.T01:CDS |
| TTCGTGGCATATAAGTTTGG+TGG | 0.479076 | 4:+57366445 | None:intergenic |
| AACTGGACCCATGTAATGTT+TGG | 0.479645 | 4:+57366484 | None:intergenic |
| GTTGGAGTAACAGGAATGGC+TGG | 0.481819 | 4:-57366836 | MsG0480021394.01.T01:CDS |
| CAAGCGTTTAATTGCACAAA+CGG | 0.481885 | 4:-57366107 | MsG0480021394.01.T01:CDS |
| GAGTGTTATATGGGTGAGAG+AGG | 0.483711 | 4:+57366517 | None:intergenic |
| TAATCCTAAATGGCGACATA+TGG | 0.484403 | 4:+57366244 | None:intergenic |
| ATATGGGTGAGAGAGGAAGA+TGG | 0.485484 | 4:+57366524 | None:intergenic |
| GCTGCTTCAAGGCTTTGGCT+AGG | 0.489750 | 4:+57366807 | None:intergenic |
| ACGTAATAGAAATTTGGGTA+AGG | 0.497259 | 4:+57366392 | None:intergenic |
| GTGGAGTTAATGCGTGATAA+GGG | 0.499998 | 4:-57365990 | MsG0480021394.01.T01:CDS |
| CGTGGCATATTCTCATGAAA+AGG | 0.500622 | 4:+57366419 | None:intergenic |
| GCTGCACCGTAAACTTTCCA+TGG | 0.501136 | 4:+57366767 | None:intergenic |
| CATGGGTCCAGTTCATGATC+CGG | 0.501165 | 4:-57366474 | MsG0480021394.01.T01:CDS |
| AGGAAGATGGAGAAGATTTG+AGG | 0.504270 | 4:+57366537 | None:intergenic |
| TGACATACCTATTATGATAG+AGG | 0.505635 | 4:+57366313 | None:intergenic |
| AGCATGTTGTGTGCACTCCT+TGG | 0.507279 | 4:+57366290 | None:intergenic |
| ACCCATATAACACTCCAAAC+CGG | 0.508475 | 4:-57366509 | MsG0480021394.01.T01:CDS |
| GTCCAGTTCATGATCCGGTT+CGG | 0.509772 | 4:-57366469 | MsG0480021394.01.T01:CDS |
| ATCCAGGAAACAGGTACACT+TGG | 0.510852 | 4:-57366211 | MsG0480021394.01.T01:CDS |
| CTGTTTCCTGGATAACGAAA+AGG | 0.512273 | 4:+57366221 | None:intergenic |
| AGCTGAGTTGACAGCGTCAA+AGG | 0.516806 | 4:+57366691 | None:intergenic |
| TTGGGATATTGGTAACAGCT+TGG | 0.520967 | 4:+57366658 | None:intergenic |
| ATCTAGTATGAACAAGAGTA+AGG | 0.523341 | 4:-57365856 | MsG0480021394.01.T01:CDS |
| GCAATTCAATGTTGGTAGAC+GGG | 0.530484 | 4:+57365753 | None:intergenic |
| TGCAATTCAATGTTGGTAGA+CGG | 0.532767 | 4:+57365752 | None:intergenic |
| TCTCATGAAAAGGTGTTTCG+TGG | 0.533034 | 4:+57366429 | None:intergenic |
| AAACCATCAAGGATGGAAGA+AGG | 0.533134 | 4:+57366719 | None:intergenic |
| AATTGCTTCCTTTGAAGCAA+CGG | 0.544770 | 4:-57365910 | MsG0480021394.01.T01:CDS |
| AAATTTCTATTACGTGCTTG+AGG | 0.545697 | 4:-57366384 | MsG0480021394.01.T01:CDS |
| CGTAATAGAAATTTGGGTAA+GGG | 0.551405 | 4:+57366393 | None:intergenic |
| GGTGATGAAACCATCAAGGA+TGG | 0.551500 | 4:+57366712 | None:intergenic |
| TTCTGTGATATGACGGATGT+AGG | 0.555750 | 4:-57366182 | MsG0480021394.01.T01:CDS |
| TGTACGAAATTCCGTAGCAC+TGG | 0.559150 | 4:-57366861 | MsG0480021394.01.T01:CDS |
| CCGACAATGCAATTCAATGT+TGG | 0.559823 | 4:+57365745 | None:intergenic |
| TACTCCAACCACCAGTGCTA+CGG | 0.560800 | 4:+57366850 | None:intergenic |
| AGATGGAGAAGATTTGAGGA+CGG | 0.565001 | 4:+57366541 | None:intergenic |
| CTGATTGTCTTGGAGGCCCA+TGG | 0.579424 | 4:-57366784 | MsG0480021394.01.T01:CDS |
| GAAACCAACCGTCGGCGGAG+CGG | 0.581110 | 4:+57366741 | None:intergenic |
| ACTGGAACGTGACCCAAAAG+AGG | 0.594156 | 4:+57366624 | None:intergenic |
| TATGTGGATGTTGCTTAGTG+AGG | 0.596746 | 4:-57366063 | MsG0480021394.01.T01:CDS |
| GATTCTGGGTGGCTAAGCTG+AGG | 0.597911 | 4:-57365791 | MsG0480021394.01.T01:CDS |
| GTATGTAACCGAAGGTGCAT+AGG | 0.598466 | 4:+57366349 | None:intergenic |
| CAAAGGTGATGAAACCATCA+AGG | 0.599116 | 4:+57366708 | None:intergenic |
| ACGAAATTCCGTAGCACTGG+TGG | 0.600681 | 4:-57366858 | MsG0480021394.01.T01:CDS |
| GGTGAGAACATTAAGAAGCA+TGG | 0.604108 | 4:+57366562 | None:intergenic |
| GCTTGCAAAGCAACATGTGT+GGG | 0.604170 | 4:-57366156 | MsG0480021394.01.T01:CDS |
| AAGCAACGGTGCCAGTTCTG+CGG | 0.604203 | 4:-57365896 | MsG0480021394.01.T01:CDS |
| TTGGAGTAACAGGAATGGCT+GGG | 0.618664 | 4:-57366835 | MsG0480021394.01.T01:CDS |
| GGAGCATTTCTGTGATATGA+CGG | 0.620486 | 4:-57366189 | MsG0480021394.01.T01:CDS |
| AATTCCGTAGCACTGGTGGT+TGG | 0.620890 | 4:-57366854 | MsG0480021394.01.T01:CDS |
| GATTTGGGACTTGATTGTCG+AGG | 0.621595 | 4:-57365964 | MsG0480021394.01.T01:CDS |
| AAATTTGGGTAAGGGAGTCG+TGG | 0.629424 | 4:+57366401 | None:intergenic |
| GTTTGTGGAGTTGAATGACA+AGG | 0.631208 | 4:-57366027 | MsG0480021394.01.T01:CDS |
| CTGCACCGTAAACTTTCCAT+GGG | 0.632624 | 4:+57366768 | None:intergenic |
| ATTCTGGGTGGCTAAGCTGA+GGG | 0.633204 | 4:-57365790 | MsG0480021394.01.T01:CDS |
| TGCTTGCAAAGCAACATGTG+TGG | 0.638014 | 4:-57366157 | MsG0480021394.01.T01:CDS |
| TGTATTGAGTATGTAACCGA+AGG | 0.639133 | 4:+57366341 | None:intergenic |
| GGAACGTGACCCAAAAGAGG+TGG | 0.641679 | 4:+57366627 | None:intergenic |
| TCCAGGAAACAGGTACACTT+GGG | 0.643371 | 4:-57366210 | MsG0480021394.01.T01:CDS |
| ACCGGAACCAAACATTACAT+GGG | 0.645400 | 4:-57366491 | MsG0480021394.01.T01:CDS |
| AGAAGGAAACCAACCGTCGG+CGG | 0.647598 | 4:+57366736 | None:intergenic |
| TCATAATAGGTATGTCACCA+AGG | 0.670293 | 4:-57366307 | MsG0480021394.01.T01:CDS |
| GAACGTGACCCAAAAGAGGT+GGG | 0.673571 | 4:+57366628 | None:intergenic |
| TAAGAGTATCAGATTCTGGG+TGG | 0.693537 | 4:-57365802 | MsG0480021394.01.T01:CDS |
| GGTGGTTGGAGTAACAGGAA+TGG | 0.704306 | 4:-57366840 | MsG0480021394.01.T01:CDS |
| GGAAGAAGGAAACCAACCGT+CGG | 0.707712 | 4:+57366733 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| AAATTTCTATTACGTGCTTG+AGG | - | Chr4:57366240-57366259 | MsG0480021394.01.T01:CDS | 30.0% | |
| AACGAAAAGGTAATCCTAAA+TGG | + | Chr4:57366393-57366412 | None:intergenic | 30.0% | |
| ACGTAATAGAAATTTGGGTA+AGG | + | Chr4:57366235-57366254 | None:intergenic | 30.0% | |
| ATCTAGTATGAACAAGAGTA+AGG | - | Chr4:57366768-57366787 | MsG0480021394.01.T01:CDS | 30.0% | |
| ATGAACAAGAGTAAGGATTA+TGG | - | Chr4:57366775-57366794 | MsG0480021394.01.T01:CDS | 30.0% | |
| CAAGCACGTAATAGAAATTT+GGG | + | Chr4:57366240-57366259 | None:intergenic | 30.0% | |
| CGTAATAGAAATTTGGGTAA+GGG | + | Chr4:57366234-57366253 | None:intergenic | 30.0% | |
| TCAAGCACGTAATAGAAATT+TGG | + | Chr4:57366241-57366260 | None:intergenic | 30.0% | |
| TGAACAAGAGTAAGGATTAT+GGG | - | Chr4:57366776-57366795 | MsG0480021394.01.T01:CDS | 30.0% | |
| TGACATACCTATTATGATAG+AGG | + | Chr4:57366314-57366333 | None:intergenic | 30.0% | |
| ! | GGTTTTTGATGTTAAGTTTG+TGG | - | Chr4:57366582-57366601 | MsG0480021394.01.T01:CDS | 30.0% |
| !! | GTTTAAGAGTATCAGATTCT+GGG | - | Chr4:57366819-57366838 | MsG0480021394.01.T01:CDS | 30.0% |
| !!! | AAGAAGCATGGTTTTGTTAA+CGG | + | Chr4:57366053-57366072 | None:intergenic | 30.0% |
| ACTTGATTGTCGAGGAATAT+GGG | - | Chr4:57366668-57366687 | MsG0480021394.01.T01:CDS | 35.0% | |
| CAAGCGTTTAATTGCACAAA+CGG | - | Chr4:57366517-57366536 | MsG0480021394.01.T01:CDS | 35.0% | |
| CATCGATCCTCTATCATAAT+AGG | - | Chr4:57366304-57366323 | MsG0480021394.01.T01:CDS | 35.0% | |
| TAATCCTAAATGGCGACATA+TGG | + | Chr4:57366383-57366402 | None:intergenic | 35.0% | |
| TCATAATAGGTATGTCACCA+AGG | - | Chr4:57366317-57366336 | MsG0480021394.01.T01:CDS | 35.0% | |
| TGACAAGGAAGAGTTTGATT+TGG | - | Chr4:57366612-57366631 | MsG0480021394.01.T01:CDS | 35.0% | |
| TGTATTGAGTATGTAACCGA+AGG | + | Chr4:57366286-57366305 | None:intergenic | 35.0% | |
| TGTTTCGTGGCATATAAGTT+TGG | + | Chr4:57366185-57366204 | None:intergenic | 35.0% | |
| !! | AATTGCTTCCTTTGAAGCAA+CGG | - | Chr4:57366714-57366733 | MsG0480021394.01.T01:CDS | 35.0% |
| !! | CGTTTAAGAGTATCAGATTC+TGG | - | Chr4:57366818-57366837 | MsG0480021394.01.T01:CDS | 35.0% |
| !! | TTTTCACTTGGAAGAGTATG+TGG | - | Chr4:57366545-57366564 | MsG0480021394.01.T01:CDS | 35.0% |
| AAACCATCAAGGATGGAAGA+AGG | + | Chr4:57365908-57365927 | None:intergenic | 40.0% | |
| AACCGGAACCAAACATTACA+TGG | - | Chr4:57366132-57366151 | MsG0480021394.01.T01:CDS | 40.0% | |
| AACTGGACCCATGTAATGTT+TGG | + | Chr4:57366143-57366162 | None:intergenic | 40.0% | |
| ACCCATATAACACTCCAAAC+CGG | - | Chr4:57366115-57366134 | MsG0480021394.01.T01:CDS | 40.0% | |
| ACCGGAACCAAACATTACAT+GGG | - | Chr4:57366133-57366152 | MsG0480021394.01.T01:CDS | 40.0% | |
| AGATGGAGAAGATTTGAGGA+CGG | + | Chr4:57366086-57366105 | None:intergenic | 40.0% | |
| AGGAAGATGGAGAAGATTTG+AGG | + | Chr4:57366090-57366109 | None:intergenic | 40.0% | |
| CAAAGGTGATGAAACCATCA+AGG | + | Chr4:57365919-57365938 | None:intergenic | 40.0% | |
| CGTGGCATATTCTCATGAAA+AGG | + | Chr4:57366208-57366227 | None:intergenic | 40.0% | |
| CGTTTGTGCAATTAAACGCT+TGG | + | Chr4:57366519-57366538 | None:intergenic | 40.0% | |
| CTGTTTCCTGGATAACGAAA+AGG | + | Chr4:57366406-57366425 | None:intergenic | 40.0% | |
| CTTCTTCATCACCTACAAAC+TGG | + | Chr4:57366021-57366040 | None:intergenic | 40.0% | |
| GACTTGATTGTCGAGGAATA+TGG | - | Chr4:57366667-57366686 | MsG0480021394.01.T01:CDS | 40.0% | |
| GCTTCATAAGACCAAATTGC+AGG | - | Chr4:57366690-57366709 | MsG0480021394.01.T01:CDS | 40.0% | |
| GGAAGCAATTTCCTGCAATT+TGG | + | Chr4:57366704-57366723 | None:intergenic | 40.0% | |
| GGTGAGAACATTAAGAAGCA+TGG | + | Chr4:57366065-57366084 | None:intergenic | 40.0% | |
| GTGGAGTTAATGCGTGATAA+GGG | - | Chr4:57366634-57366653 | MsG0480021394.01.T01:CDS | 40.0% | |
| GTTTGTGGAGTTGAATGACA+AGG | - | Chr4:57366597-57366616 | MsG0480021394.01.T01:CDS | 40.0% | |
| TTCGTGGCATATAAGTTTGG+TGG | + | Chr4:57366182-57366201 | None:intergenic | 40.0% | |
| TTTCCTTCTTCCATCCTTGA+TGG | - | Chr4:57365902-57365921 | MsG0480021394.01.T01:CDS | 40.0% | |
| ! | ACCCATGTAATGTTTGGTTC+CGG | + | Chr4:57366137-57366156 | None:intergenic | 40.0% |
| ! | CTTTTCGTTATCCAGGAAAC+AGG | - | Chr4:57366404-57366423 | MsG0480021394.01.T01:CDS | 40.0% |
| ! | GGAGCATTTCTGTGATATGA+CGG | - | Chr4:57366435-57366454 | MsG0480021394.01.T01:CDS | 40.0% |
| ! | GGATTACCTTTTCGTTATCC+AGG | - | Chr4:57366397-57366416 | MsG0480021394.01.T01:CDS | 40.0% |
| ! | TATGTGGATGTTGCTTAGTG+AGG | - | Chr4:57366561-57366580 | MsG0480021394.01.T01:CDS | 40.0% |
| ! | TGTAATGTTTGGTTCCGGTT+TGG | + | Chr4:57366132-57366151 | None:intergenic | 40.0% |
| ! | TTGGGATATTGGTAACAGCT+TGG | + | Chr4:57365969-57365988 | None:intergenic | 40.0% |
| !! | CAAGGAAGAGTTTGATTTGG+TGG | - | Chr4:57366615-57366634 | MsG0480021394.01.T01:CDS | 40.0% |
| !! | TAAGAGTATCAGATTCTGGG+TGG | - | Chr4:57366822-57366841 | MsG0480021394.01.T01:CDS | 40.0% |
| !! | TCCGGTTTGGAGTGTTATAT+GGG | + | Chr4:57366119-57366138 | None:intergenic | 40.0% |
| !! | TCTCATGAAAAGGTGTTTCG+TGG | + | Chr4:57366198-57366217 | None:intergenic | 40.0% |
| !! | TTCCGGTTTGGAGTGTTATA+TGG | + | Chr4:57366120-57366139 | None:intergenic | 40.0% |
| !! | TTCTGTGATATGACGGATGT+AGG | - | Chr4:57366442-57366461 | MsG0480021394.01.T01:CDS | 40.0% |
| AAAAGAGGTGGGTGACTTCT+TGG | + | Chr4:57365988-57366007 | None:intergenic | 45.0% | |
| AAAGAGGTGGGTGACTTCTT+GGG | + | Chr4:57365987-57366006 | None:intergenic | 45.0% | |
| AAATTTGGGTAAGGGAGTCG+TGG | + | Chr4:57366226-57366245 | None:intergenic | 45.0% | |
| AAGACAATCAGGCTGCTTCA+AGG | + | Chr4:57365831-57365850 | None:intergenic | 45.0% | |
| ATATGGGTGAGAGAGGAAGA+TGG | + | Chr4:57366103-57366122 | None:intergenic | 45.0% | |
| ATCCAGGAAACAGGTACACT+TGG | - | Chr4:57366413-57366432 | MsG0480021394.01.T01:CDS | 45.0% | |
| CGTTACATCCTATGCACCTT+CGG | - | Chr4:57366267-57366286 | MsG0480021394.01.T01:CDS | 45.0% | |
| CTGCACCGTAAACTTTCCAT+GGG | + | Chr4:57365859-57365878 | None:intergenic | 45.0% | |
| GAGTGTTATATGGGTGAGAG+AGG | + | Chr4:57366110-57366129 | None:intergenic | 45.0% | |
| GCGTGATAAGGGTGAGATTT+GGG | - | Chr4:57366645-57366664 | MsG0480021394.01.T01:CDS | 45.0% | |
| GCTTGCAAAGCAACATGTGT+GGG | - | Chr4:57366468-57366487 | MsG0480021394.01.T01:CDS | 45.0% | |
| GGTGATGAAACCATCAAGGA+TGG | + | Chr4:57365915-57365934 | None:intergenic | 45.0% | |
| GGTGGAGTTAATGCGTGATA+AGG | - | Chr4:57366633-57366652 | MsG0480021394.01.T01:CDS | 45.0% | |
| TCCAGGAAACAGGTACACTT+GGG | - | Chr4:57366414-57366433 | MsG0480021394.01.T01:CDS | 45.0% | |
| TGAAACTCAAACCGCAGAAC+TGG | + | Chr4:57366742-57366761 | None:intergenic | 45.0% | |
| TGCGTGATAAGGGTGAGATT+TGG | - | Chr4:57366644-57366663 | MsG0480021394.01.T01:CDS | 45.0% | |
| TGCTTGCAAAGCAACATGTG+TGG | - | Chr4:57366467-57366486 | MsG0480021394.01.T01:CDS | 45.0% | |
| TGGGTGACTTCTTGGGATAT+TGG | + | Chr4:57365980-57365999 | None:intergenic | 45.0% | |
| TGTACGAAATTCCGTAGCAC+TGG | - | Chr4:57365763-57365782 | MsG0480021394.01.T01:CDS | 45.0% | |
| TTGAAGCAGCCTGATTGTCT+TGG | - | Chr4:57365830-57365849 | MsG0480021394.01.T01:CDS | 45.0% | |
| TTGGAGTAACAGGAATGGCT+GGG | - | Chr4:57365789-57365808 | MsG0480021394.01.T01:CDS | 45.0% | |
| ! | AAGAAGTCACCCACCTCTTT+TGG | - | Chr4:57365987-57366006 | MsG0480021394.01.T01:CDS | 45.0% |
| ! | AGAAGTCACCCACCTCTTTT+GGG | - | Chr4:57365988-57366007 | MsG0480021394.01.T01:CDS | 45.0% |
| ! | ATAAGTTTGGTGGACCGAAC+CGG | + | Chr4:57366172-57366191 | None:intergenic | 45.0% |
| ! | CAAACGGCGATGTTTTCACT+TGG | - | Chr4:57366533-57366552 | MsG0480021394.01.T01:CDS | 45.0% |
| ! | GATTTGGGACTTGATTGTCG+AGG | - | Chr4:57366660-57366679 | MsG0480021394.01.T01:CDS | 45.0% |
| ! | GTATGTAACCGAAGGTGCAT+AGG | + | Chr4:57366278-57366297 | None:intergenic | 45.0% |
| AACTGGCACCGTTGCTTCAA+AGG | + | Chr4:57366725-57366744 | None:intergenic | 50.0% | |
| AAGCAGCCTGATTGTCTTGG+AGG | - | Chr4:57365833-57365852 | MsG0480021394.01.T01:CDS | 50.0% | |
| ACTGGAACGTGACCCAAAAG+AGG | + | Chr4:57366003-57366022 | None:intergenic | 50.0% | |
| AGCATGTTGTGTGCACTCCT+TGG | + | Chr4:57366337-57366356 | None:intergenic | 50.0% | |
| ATCAGGCTGCTTCAAGGCTT+TGG | + | Chr4:57365825-57365844 | None:intergenic | 50.0% | |
| ATTCTGGGTGGCTAAGCTGA+GGG | - | Chr4:57366834-57366853 | MsG0480021394.01.T01:CDS | 50.0% | |
| CATGGGTCCAGTTCATGATC+CGG | - | Chr4:57366150-57366169 | MsG0480021394.01.T01:CDS | 50.0% | |
| GAACGTGACCCAAAAGAGGT+GGG | + | Chr4:57365999-57366018 | None:intergenic | 50.0% | |
| GCTGCACCGTAAACTTTCCA+TGG | + | Chr4:57365860-57365879 | None:intergenic | 50.0% | |
| GCTGCCATATGTCGCCATTT+AGG | - | Chr4:57366376-57366395 | MsG0480021394.01.T01:CDS | 50.0% | |
| GGAAGAAGGAAACCAACCGT+CGG | + | Chr4:57365894-57365913 | None:intergenic | 50.0% | |
| GGAGGCCCATGGAAAGTTTA+CGG | - | Chr4:57365851-57365870 | MsG0480021394.01.T01:CDS | 50.0% | |
| GGTGGTTGGAGTAACAGGAA+TGG | - | Chr4:57365784-57365803 | MsG0480021394.01.T01:CDS | 50.0% | |
| GTCCAGTTCATGATCCGGTT+CGG | - | Chr4:57366155-57366174 | MsG0480021394.01.T01:CDS | 50.0% | |
| GTTGGAGTAACAGGAATGGC+TGG | - | Chr4:57365788-57365807 | MsG0480021394.01.T01:CDS | 50.0% | |
| TACTCCAACCACCAGTGCTA+CGG | + | Chr4:57365777-57365796 | None:intergenic | 50.0% | |
| TCCCAAGTGTACCTGTTTCC+TGG | + | Chr4:57366418-57366437 | None:intergenic | 50.0% | |
| TGGGTCACGTTCCAGTTTGT+AGG | - | Chr4:57366007-57366026 | MsG0480021394.01.T01:CDS | 50.0% | |
| ! | ACGAAATTCCGTAGCACTGG+TGG | - | Chr4:57365766-57365785 | MsG0480021394.01.T01:CDS | 50.0% |
| ! | AGCTGAGTTGACAGCGTCAA+AGG | + | Chr4:57365936-57365955 | None:intergenic | 50.0% |
| !! | AATTCCGTAGCACTGGTGGT+TGG | - | Chr4:57365770-57365789 | MsG0480021394.01.T01:CDS | 50.0% |
| AGAAGGAAACCAACCGTCGG+CGG | + | Chr4:57365891-57365910 | None:intergenic | 55.0% | |
| CATGGGCCTCCAAGACAATC+AGG | + | Chr4:57365842-57365861 | None:intergenic | 55.0% | |
| CTGATTGTCTTGGAGGCCCA+TGG | - | Chr4:57365840-57365859 | MsG0480021394.01.T01:CDS | 55.0% | |
| GACCGAACCGGATCATGAAC+TGG | + | Chr4:57366160-57366179 | None:intergenic | 55.0% | |
| GATTCTGGGTGGCTAAGCTG+AGG | - | Chr4:57366833-57366852 | MsG0480021394.01.T01:CDS | 55.0% | |
| GGAACGTGACCCAAAAGAGG+TGG | + | Chr4:57366000-57366019 | None:intergenic | 55.0% | |
| ! | AAGCAACGGTGCCAGTTCTG+CGG | - | Chr4:57366728-57366747 | MsG0480021394.01.T01:CDS | 55.0% |
| ! | GCACTGGTGGTTGGAGTAAC+AGG | - | Chr4:57365779-57365798 | MsG0480021394.01.T01:CDS | 55.0% |
| ! | GCTGCTTCAAGGCTTTGGCT+AGG | + | Chr4:57365820-57365839 | None:intergenic | 55.0% |
| GAAACCAACCGTCGGCGGAG+CGG | + | Chr4:57365886-57365905 | None:intergenic | 65.0% | |
| ! | CTCGCCGCTCCGCCGACGGT+TGG | - | Chr4:57365879-57365898 | MsG0480021394.01.T01:CDS | 80.0% |
| ! | GCAGCTCGCCGCTCCGCCGA+CGG | - | Chr4:57365875-57365894 | MsG0480021394.01.T01:CDS | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr4 | gene | 57365758 | 57366888 | 57365758 | ID=MsG0480021394.01;Name=MsG0480021394.01 |
| Chr4 | mRNA | 57365758 | 57366888 | 57365758 | ID=MsG0480021394.01.T01;Parent=MsG0480021394.01;Name=MsG0480021394.01.T01;_AED=0.37;_eAED=0.37;_QI=0|-1|0|1|-1|1|1|0|376 |
| Chr4 | exon | 57365758 | 57366888 | 57365758 | ID=MsG0480021394.01.T01:exon:6554;Parent=MsG0480021394.01.T01 |
| Chr4 | CDS | 57365758 | 57366888 | 57365758 | ID=MsG0480021394.01.T01:cds;Parent=MsG0480021394.01.T01 |
| Gene Sequence |
| Protein sequence |
