AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480022430.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480022430.01.T01 MTR_4g073090 95.213 376 18 0 1 376 1 376 0.0 754
MsG0480022430.01.T01 MTR_4g121570 83.511 376 62 0 1 376 1 376 0.0 676
MsG0480022430.01.T01 MTR_4g121590 80.851 376 72 0 1 376 1 376 0.0 650
MsG0480022430.01.T01 MTR_3g102770 43.127 371 199 7 6 372 27 389 5.31e-97 294
MsG0480022430.01.T01 MTR_3g102730 42.933 375 195 9 6 372 27 390 3.07e-96 292
MsG0480022430.01.T01 MTR_3g102760 42.091 373 203 8 5 372 26 390 1.21e-95 291
MsG0480022430.01.T01 MTR_1g018610 42.246 374 205 7 2 372 58 423 1.33e-95 291
MsG0480022430.01.T01 MTR_3g013890 42.667 375 196 9 6 372 27 390 1.37e-95 290
MsG0480022430.01.T01 MTR_1g018590 41.622 370 206 6 6 372 32 394 2.19e-94 288
MsG0480022430.01.T01 MTR_1g018580 39.189 370 191 6 6 372 26 364 7.73e-85 262
MsG0480022430.01.T01 MTR_3g463660 36.842 380 218 12 4 372 7 375 1.75e-70 225
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480022430.01.T01 AT4G24220 42.049 371 202 8 6 372 26 387 4.51e-96 291
MsG0480022430.01.T01 AT4G24220 42.049 371 202 8 6 372 27 388 4.66e-96 291
MsG0480022430.01.T01 AT5G58750 32.552 384 235 12 3 373 6 378 2.24e-59 197
MsG0480022430.01.T01 AT5G58750 32.552 384 235 12 3 373 14 386 3.78e-59 196

Find 113 sgRNAs with CRISPR-Local

Find 117 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCAAGCACGTAATAGAAATT+TGG 0.168674 4:-72503924 None:intergenic
AAGAAGTCACCCACCTCTTT+TGG 0.213578 4:+72503673 MsG0480022430.01.T01:CDS
CGTTTAAGAGTATCAGATTC+TGG 0.234355 4:+72504504 MsG0480022430.01.T01:CDS
GACTTGATTGTCGAGGAATA+TGG 0.263491 4:+72504353 MsG0480022430.01.T01:CDS
TTTCCTTCTTCCATCCTTGA+TGG 0.275110 4:+72503588 MsG0480022430.01.T01:CDS
TTCCGGTTTGGAGTGTTATA+TGG 0.277420 4:-72503803 None:intergenic
GCTGCCATATGTCGCCATTT+AGG 0.280720 4:+72504062 MsG0480022430.01.T01:CDS
ATGAACAAGAGTAAGGATTA+TGG 0.289410 4:+72504461 MsG0480022430.01.T01:CDS
CATCGATCCTCTATCATAAT+AGG 0.292341 4:+72503990 MsG0480022430.01.T01:CDS
AAAAGAGGTGGGTGACTTCT+TGG 0.296908 4:-72503671 None:intergenic
GGAAGCAATTTCCTGCAATT+TGG 0.303114 4:-72504387 None:intergenic
TGCGTGATAAGGGTGAGATT+TGG 0.330513 4:+72504330 MsG0480022430.01.T01:CDS
ATCAGGCTGCTTCAAGGCTT+TGG 0.337780 4:-72503508 None:intergenic
GCACTGGTGGTTGGAGTAAC+AGG 0.353312 4:+72503465 MsG0480022430.01.T01:CDS
CAAGCACGTAATAGAAATTT+GGG 0.353974 4:-72503923 None:intergenic
AAAGAAAAGGTAATCCTAAA+TGG 0.355473 4:-72504076 None:intergenic
GGAGGCCCATGGAAAGTTTA+CGG 0.363918 4:+72503537 MsG0480022430.01.T01:CDS
GCGTGATAAGGGTGAGATTT+GGG 0.371349 4:+72504331 MsG0480022430.01.T01:CDS
CTTCTTCATCACCTACAAAC+TGG 0.385026 4:-72503704 None:intergenic
CAAGGAAGAGTTTGATTTGG+TGG 0.392348 4:+72504301 MsG0480022430.01.T01:CDS
TGGGTCACGTTCCAGTTTGT+AGG 0.396862 4:+72503693 MsG0480022430.01.T01:CDS
TGGGTGACTTCTTGGGATAT+TGG 0.406438 4:-72503663 None:intergenic
ACCCATGTAATGTTTGGTTC+CGG 0.408112 4:-72503820 None:intergenic
AAGCAGCCTGATTGTCTTGG+AGG 0.408544 4:+72503519 MsG0480022430.01.T01:CDS
TCCCAAGTGTACCTGTTTCC+TGG 0.408987 4:-72504101 None:intergenic
TGTAATGTTTGGTTCCGGTT+TGG 0.409989 4:-72503815 None:intergenic
TGTTTCGTGGCATATAAGTT+TGG 0.415707 4:-72503868 None:intergenic
ACTTGATTGTCGAGGAATAT+GGG 0.422566 4:+72504354 MsG0480022430.01.T01:CDS
CTCGCCGCTCCGCCGACGGT+TGG 0.426749 4:+72503565 MsG0480022430.01.T01:CDS
CGTTACATCCTATGCACCTT+CGG 0.429287 4:+72503953 MsG0480022430.01.T01:CDS
TCCGGTTTGGAGTGTTATAT+GGG 0.429734 4:-72503802 None:intergenic
TGAAACTCAAACCGCAGAAC+TGG 0.435621 4:-72504425 None:intergenic
GACCGAACCGGATCATGAAC+TGG 0.436608 4:-72503843 None:intergenic
TGAACAAGAGTAAGGATTAT+GGG 0.445952 4:+72504462 MsG0480022430.01.T01:CDS
AACCGGAACCAAACATTACA+TGG 0.447203 4:+72503818 MsG0480022430.01.T01:CDS
TGACAAGGAAGAGTTTGATT+TGG 0.447305 4:+72504298 MsG0480022430.01.T01:CDS
CATGGGCCTCCAAGACAATC+AGG 0.450062 4:-72503525 None:intergenic
TTGAAGCAGCCTGATTGTCT+TGG 0.454331 4:+72503516 MsG0480022430.01.T01:CDS
AAGACAATCAGGCTGCTTCA+AGG 0.459742 4:-72503514 None:intergenic
AAAGAGGTGGGTGACTTCTT+GGG 0.459855 4:-72503670 None:intergenic
AACTGGCACCGTTGCTTCAA+AGG 0.459967 4:-72504408 None:intergenic
GCAGCTCGCCGCTCCGCCGA+CGG 0.460373 4:+72503561 MsG0480022430.01.T01:CDS
GGTGGAGTTAATGCGTGATA+AGG 0.462624 4:+72504319 MsG0480022430.01.T01:CDS
GCTTCATAAGACCAAATTGC+AGG 0.471225 4:+72504376 MsG0480022430.01.T01:CDS
ATAAGTTTGGTGGACCGAAC+CGG 0.472714 4:-72503855 None:intergenic
CGTTTGTGCAATTAAACGCT+TGG 0.475175 4:-72504202 None:intergenic
GTTTAAGAGTATCAGATTCT+GGG 0.476243 4:+72504505 MsG0480022430.01.T01:CDS
TTCGTGGCATATAAGTTTGG+TGG 0.479076 4:-72503865 None:intergenic
AACTGGACCCATGTAATGTT+TGG 0.479645 4:-72503826 None:intergenic
GTTGGAGTAACAGGAATGGC+TGG 0.481819 4:+72503474 MsG0480022430.01.T01:CDS
CAAGCGTTTAATTGCACAAA+CGG 0.481885 4:+72504203 MsG0480022430.01.T01:CDS
GAGTGTTATATGGGTGAGAG+AGG 0.483711 4:-72503793 None:intergenic
TAATCCTAAATGGCGACATA+TGG 0.484403 4:-72504066 None:intergenic
ATATGGGTGAGAGAGGAAGA+TGG 0.485484 4:-72503786 None:intergenic
GCTGCTTCAAGGCTTTGGCT+AGG 0.489750 4:-72503503 None:intergenic
ACGTAATAGAAATTTGGGTA+AGG 0.497259 4:-72503918 None:intergenic
GTGGAGTTAATGCGTGATAA+GGG 0.499998 4:+72504320 MsG0480022430.01.T01:CDS
CGTGGCATATTCTCATGAAA+AGG 0.500622 4:-72503891 None:intergenic
GCTGCACCGTAAACTTTCCA+TGG 0.501136 4:-72503543 None:intergenic
CATGGGTCCAGTTCATGATC+CGG 0.501165 4:+72503836 MsG0480022430.01.T01:CDS
AGGAAGATGGAGAAGATTTG+AGG 0.504270 4:-72503773 None:intergenic
ATCCAGGAAACAGGTACACT+TGG 0.505367 4:+72504099 MsG0480022430.01.T01:CDS
TGACATACCTATTATGATAG+AGG 0.505635 4:-72503997 None:intergenic
AGCATGTTGTGTGCACTCCT+TGG 0.507279 4:-72504020 None:intergenic
ACCCATATAACACTCCAAAC+CGG 0.508475 4:+72503801 MsG0480022430.01.T01:CDS
GTCCAGTTCATGATCCGGTT+CGG 0.509772 4:+72503841 MsG0480022430.01.T01:CDS
CTGTTTCCTGGATAAAGAAA+AGG 0.511918 4:-72504089 None:intergenic
AGCTGAGTTGACAGCGTCAA+AGG 0.516806 4:-72503619 None:intergenic
TTGGGATATTGGTAACAGCT+TGG 0.520967 4:-72503652 None:intergenic
ATCTAGTATGAACAAGAGTA+AGG 0.523341 4:+72504454 MsG0480022430.01.T01:CDS
GCAATTCAATGTTGGTAGAC+GGG 0.530484 4:-72504557 None:intergenic
TGCAATTCAATGTTGGTAGA+CGG 0.532767 4:-72504558 None:intergenic
TCTCATGAAAAGGTGTTTCG+TGG 0.533034 4:-72503881 None:intergenic
AAACCATCAAGGATGGAAGA+AGG 0.533134 4:-72503591 None:intergenic
AATTGCTTCCTTTGAAGCAA+CGG 0.544770 4:+72504400 MsG0480022430.01.T01:CDS
AAATTTCTATTACGTGCTTG+AGG 0.545697 4:+72503926 MsG0480022430.01.T01:CDS
CGTAATAGAAATTTGGGTAA+GGG 0.551405 4:-72503917 None:intergenic
GGTGATGAAACCATCAAGGA+TGG 0.551500 4:-72503598 None:intergenic
TTCTGTGATATGACGGATGT+AGG 0.555750 4:+72504128 MsG0480022430.01.T01:CDS
TGTACGAAATTCCGTAGCAC+TGG 0.559150 4:+72503449 MsG0480022430.01.T01:CDS
TCGACAATGCAATTCAATGT+TGG 0.560282 4:-72504565 None:intergenic
TACTCCAACCACCAGTGCTA+CGG 0.560800 4:-72503460 None:intergenic
AGATGGAGAAGATTTGAGGA+CGG 0.565001 4:-72503769 None:intergenic
CTGATTGTCTTGGAGGCCCA+TGG 0.579424 4:+72503526 MsG0480022430.01.T01:CDS
GAAACCAACCGTCGGCGGAG+CGG 0.581110 4:-72503569 None:intergenic
ACTGGAACGTGACCCAAAAG+AGG 0.594156 4:-72503686 None:intergenic
TATGTGGATGTTGCTTAGTG+AGG 0.596746 4:+72504247 MsG0480022430.01.T01:CDS
GATTCTGGGTGGCTAAGCTG+AGG 0.597911 4:+72504519 MsG0480022430.01.T01:CDS
GTATGTAACCGAAGGTGCAT+AGG 0.598466 4:-72503961 None:intergenic
CAAAGGTGATGAAACCATCA+AGG 0.599116 4:-72503602 None:intergenic
ACGAAATTCCGTAGCACTGG+TGG 0.600681 4:+72503452 MsG0480022430.01.T01:CDS
GGTGAGAACATTAAGAAGCA+TGG 0.604108 4:-72503748 None:intergenic
GCTTGCAAAGCAACATGTGT+GGG 0.604170 4:+72504154 MsG0480022430.01.T01:CDS
AAGCAACGGTGCCAGTTCTG+CGG 0.604203 4:+72504414 MsG0480022430.01.T01:CDS
TCCAGGAAACAGGTACACTT+GGG 0.618534 4:+72504100 MsG0480022430.01.T01:CDS
TTGGAGTAACAGGAATGGCT+GGG 0.618664 4:+72503475 MsG0480022430.01.T01:CDS
GGAGCATTTCTGTGATATGA+CGG 0.620486 4:+72504121 MsG0480022430.01.T01:CDS
AATTCCGTAGCACTGGTGGT+TGG 0.620890 4:+72503456 MsG0480022430.01.T01:CDS
GATTTGGGACTTGATTGTCG+AGG 0.621595 4:+72504346 MsG0480022430.01.T01:CDS
AAATTTGGGTAAGGGAGTCG+TGG 0.629424 4:-72503909 None:intergenic
GTTTGTGGAGTTGAATGACA+AGG 0.631208 4:+72504283 MsG0480022430.01.T01:CDS
CTGCACCGTAAACTTTCCAT+GGG 0.632624 4:-72503542 None:intergenic
ATTCTGGGTGGCTAAGCTGA+GGG 0.633204 4:+72504520 MsG0480022430.01.T01:CDS
TGCTTGCAAAGCAACATGTG+TGG 0.638014 4:+72504153 MsG0480022430.01.T01:CDS
TGTATTGAGTATGTAACCGA+AGG 0.639133 4:-72503969 None:intergenic
GGAACGTGACCCAAAAGAGG+TGG 0.641679 4:-72503683 None:intergenic
ACCGGAACCAAACATTACAT+GGG 0.645400 4:+72503819 MsG0480022430.01.T01:CDS
AGAAGGAAACCAACCGTCGG+CGG 0.647598 4:-72503574 None:intergenic
TCATAATAGGTATGTCACCA+AGG 0.670293 4:+72504003 MsG0480022430.01.T01:CDS
GAACGTGACCCAAAAGAGGT+GGG 0.673571 4:-72503682 None:intergenic
TAAGAGTATCAGATTCTGGG+TGG 0.693537 4:+72504508 MsG0480022430.01.T01:CDS
GGTGGTTGGAGTAACAGGAA+TGG 0.704306 4:+72503470 MsG0480022430.01.T01:CDS
GGAAGAAGGAAACCAACCGT+CGG 0.707712 4:-72503577 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! AAAGAAAAGGTAATCCTAAA+TGG - Chr4:72504079-72504098 None:intergenic 25.0%
AAATTTCTATTACGTGCTTG+AGG + Chr4:72503926-72503945 MsG0480022430.01.T01:CDS 30.0%
ACGTAATAGAAATTTGGGTA+AGG - Chr4:72503921-72503940 None:intergenic 30.0%
ATCTAGTATGAACAAGAGTA+AGG + Chr4:72504454-72504473 MsG0480022430.01.T01:CDS 30.0%
ATGAACAAGAGTAAGGATTA+TGG + Chr4:72504461-72504480 MsG0480022430.01.T01:CDS 30.0%
CAAGCACGTAATAGAAATTT+GGG - Chr4:72503926-72503945 None:intergenic 30.0%
CGTAATAGAAATTTGGGTAA+GGG - Chr4:72503920-72503939 None:intergenic 30.0%
TCAAGCACGTAATAGAAATT+TGG - Chr4:72503927-72503946 None:intergenic 30.0%
TGAACAAGAGTAAGGATTAT+GGG + Chr4:72504462-72504481 MsG0480022430.01.T01:CDS 30.0%
TGACATACCTATTATGATAG+AGG - Chr4:72504000-72504019 None:intergenic 30.0%
! GGTTTTTGATGTTAAGTTTG+TGG + Chr4:72504268-72504287 MsG0480022430.01.T01:CDS 30.0%
!! GTTTAAGAGTATCAGATTCT+GGG + Chr4:72504505-72504524 MsG0480022430.01.T01:CDS 30.0%
!!! AAGAAGCATGGTTTTGTTAA+CGG - Chr4:72503739-72503758 None:intergenic 30.0%
ACTTGATTGTCGAGGAATAT+GGG + Chr4:72504354-72504373 MsG0480022430.01.T01:CDS 35.0%
CAAGCGTTTAATTGCACAAA+CGG + Chr4:72504203-72504222 MsG0480022430.01.T01:CDS 35.0%
CATCGATCCTCTATCATAAT+AGG + Chr4:72503990-72504009 MsG0480022430.01.T01:CDS 35.0%
CTGTTTCCTGGATAAAGAAA+AGG - Chr4:72504092-72504111 None:intergenic 35.0%
TAATCCTAAATGGCGACATA+TGG - Chr4:72504069-72504088 None:intergenic 35.0%
TCATAATAGGTATGTCACCA+AGG + Chr4:72504003-72504022 MsG0480022430.01.T01:CDS 35.0%
TGACAAGGAAGAGTTTGATT+TGG + Chr4:72504298-72504317 MsG0480022430.01.T01:CDS 35.0%
TGTATTGAGTATGTAACCGA+AGG - Chr4:72503972-72503991 None:intergenic 35.0%
TGTTTCGTGGCATATAAGTT+TGG - Chr4:72503871-72503890 None:intergenic 35.0%
! CTTTTCTTTATCCAGGAAAC+AGG + Chr4:72504090-72504109 MsG0480022430.01.T01:CDS 35.0%
! GGATTACCTTTTCTTTATCC+AGG + Chr4:72504083-72504102 MsG0480022430.01.T01:CDS 35.0%
!! AATTGCTTCCTTTGAAGCAA+CGG + Chr4:72504400-72504419 MsG0480022430.01.T01:CDS 35.0%
!! CGTTTAAGAGTATCAGATTC+TGG + Chr4:72504504-72504523 MsG0480022430.01.T01:CDS 35.0%
!! TTTTCACTTGGAAGAGTATG+TGG + Chr4:72504231-72504250 MsG0480022430.01.T01:CDS 35.0%
AAACCATCAAGGATGGAAGA+AGG - Chr4:72503594-72503613 None:intergenic 40.0%
AACCGGAACCAAACATTACA+TGG + Chr4:72503818-72503837 MsG0480022430.01.T01:CDS 40.0%
AACTGGACCCATGTAATGTT+TGG - Chr4:72503829-72503848 None:intergenic 40.0%
ACCCATATAACACTCCAAAC+CGG + Chr4:72503801-72503820 MsG0480022430.01.T01:CDS 40.0%
ACCGGAACCAAACATTACAT+GGG + Chr4:72503819-72503838 MsG0480022430.01.T01:CDS 40.0%
AGATGGAGAAGATTTGAGGA+CGG - Chr4:72503772-72503791 None:intergenic 40.0%
AGGAAGATGGAGAAGATTTG+AGG - Chr4:72503776-72503795 None:intergenic 40.0%
CAAAGGTGATGAAACCATCA+AGG - Chr4:72503605-72503624 None:intergenic 40.0%
CGTGGCATATTCTCATGAAA+AGG - Chr4:72503894-72503913 None:intergenic 40.0%
CGTTTGTGCAATTAAACGCT+TGG - Chr4:72504205-72504224 None:intergenic 40.0%
CTTCTTCATCACCTACAAAC+TGG - Chr4:72503707-72503726 None:intergenic 40.0%
GACTTGATTGTCGAGGAATA+TGG + Chr4:72504353-72504372 MsG0480022430.01.T01:CDS 40.0%
GCTTCATAAGACCAAATTGC+AGG + Chr4:72504376-72504395 MsG0480022430.01.T01:CDS 40.0%
GGAAGCAATTTCCTGCAATT+TGG - Chr4:72504390-72504409 None:intergenic 40.0%
GGTGAGAACATTAAGAAGCA+TGG - Chr4:72503751-72503770 None:intergenic 40.0%
GTGGAGTTAATGCGTGATAA+GGG + Chr4:72504320-72504339 MsG0480022430.01.T01:CDS 40.0%
GTTTGTGGAGTTGAATGACA+AGG + Chr4:72504283-72504302 MsG0480022430.01.T01:CDS 40.0%
TTCGTGGCATATAAGTTTGG+TGG - Chr4:72503868-72503887 None:intergenic 40.0%
TTTCCTTCTTCCATCCTTGA+TGG + Chr4:72503588-72503607 MsG0480022430.01.T01:CDS 40.0%
! ACCCATGTAATGTTTGGTTC+CGG - Chr4:72503823-72503842 None:intergenic 40.0%
! GGAGCATTTCTGTGATATGA+CGG + Chr4:72504121-72504140 MsG0480022430.01.T01:CDS 40.0%
! TATGTGGATGTTGCTTAGTG+AGG + Chr4:72504247-72504266 MsG0480022430.01.T01:CDS 40.0%
! TGTAATGTTTGGTTCCGGTT+TGG - Chr4:72503818-72503837 None:intergenic 40.0%
! TTGGGATATTGGTAACAGCT+TGG - Chr4:72503655-72503674 None:intergenic 40.0%
!! CAAGGAAGAGTTTGATTTGG+TGG + Chr4:72504301-72504320 MsG0480022430.01.T01:CDS 40.0%
!! TAAGAGTATCAGATTCTGGG+TGG + Chr4:72504508-72504527 MsG0480022430.01.T01:CDS 40.0%
!! TCCGGTTTGGAGTGTTATAT+GGG - Chr4:72503805-72503824 None:intergenic 40.0%
!! TCTCATGAAAAGGTGTTTCG+TGG - Chr4:72503884-72503903 None:intergenic 40.0%
!! TTCCGGTTTGGAGTGTTATA+TGG - Chr4:72503806-72503825 None:intergenic 40.0%
!! TTCTGTGATATGACGGATGT+AGG + Chr4:72504128-72504147 MsG0480022430.01.T01:CDS 40.0%
AAAAGAGGTGGGTGACTTCT+TGG - Chr4:72503674-72503693 None:intergenic 45.0%
AAAGAGGTGGGTGACTTCTT+GGG - Chr4:72503673-72503692 None:intergenic 45.0%
AAATTTGGGTAAGGGAGTCG+TGG - Chr4:72503912-72503931 None:intergenic 45.0%
AAGACAATCAGGCTGCTTCA+AGG - Chr4:72503517-72503536 None:intergenic 45.0%
ATATGGGTGAGAGAGGAAGA+TGG - Chr4:72503789-72503808 None:intergenic 45.0%
ATCCAGGAAACAGGTACACT+TGG + Chr4:72504099-72504118 MsG0480022430.01.T01:CDS 45.0%
CGTTACATCCTATGCACCTT+CGG + Chr4:72503953-72503972 MsG0480022430.01.T01:CDS 45.0%
CTGCACCGTAAACTTTCCAT+GGG - Chr4:72503545-72503564 None:intergenic 45.0%
GAGTGTTATATGGGTGAGAG+AGG - Chr4:72503796-72503815 None:intergenic 45.0%
GCGTGATAAGGGTGAGATTT+GGG + Chr4:72504331-72504350 MsG0480022430.01.T01:CDS 45.0%
GCTTGCAAAGCAACATGTGT+GGG + Chr4:72504154-72504173 MsG0480022430.01.T01:CDS 45.0%
GGTGATGAAACCATCAAGGA+TGG - Chr4:72503601-72503620 None:intergenic 45.0%
GGTGGAGTTAATGCGTGATA+AGG + Chr4:72504319-72504338 MsG0480022430.01.T01:CDS 45.0%
TCCAGGAAACAGGTACACTT+GGG + Chr4:72504100-72504119 MsG0480022430.01.T01:CDS 45.0%
TGAAACTCAAACCGCAGAAC+TGG - Chr4:72504428-72504447 None:intergenic 45.0%
TGCGTGATAAGGGTGAGATT+TGG + Chr4:72504330-72504349 MsG0480022430.01.T01:CDS 45.0%
TGCTTGCAAAGCAACATGTG+TGG + Chr4:72504153-72504172 MsG0480022430.01.T01:CDS 45.0%
TGGGTGACTTCTTGGGATAT+TGG - Chr4:72503666-72503685 None:intergenic 45.0%
TGTACGAAATTCCGTAGCAC+TGG + Chr4:72503449-72503468 MsG0480022430.01.T01:CDS 45.0%
TTGAAGCAGCCTGATTGTCT+TGG + Chr4:72503516-72503535 MsG0480022430.01.T01:CDS 45.0%
TTGGAGTAACAGGAATGGCT+GGG + Chr4:72503475-72503494 MsG0480022430.01.T01:CDS 45.0%
! AAGAAGTCACCCACCTCTTT+TGG + Chr4:72503673-72503692 MsG0480022430.01.T01:CDS 45.0%
! AGAAGTCACCCACCTCTTTT+GGG + Chr4:72503674-72503693 MsG0480022430.01.T01:CDS 45.0%
! ATAAGTTTGGTGGACCGAAC+CGG - Chr4:72503858-72503877 None:intergenic 45.0%
! CAAACGGCGATGTTTTCACT+TGG + Chr4:72504219-72504238 MsG0480022430.01.T01:CDS 45.0%
! GATTTGGGACTTGATTGTCG+AGG + Chr4:72504346-72504365 MsG0480022430.01.T01:CDS 45.0%
! GTATGTAACCGAAGGTGCAT+AGG - Chr4:72503964-72503983 None:intergenic 45.0%
AACTGGCACCGTTGCTTCAA+AGG - Chr4:72504411-72504430 None:intergenic 50.0%
AAGCAGCCTGATTGTCTTGG+AGG + Chr4:72503519-72503538 MsG0480022430.01.T01:CDS 50.0%
ACTGGAACGTGACCCAAAAG+AGG - Chr4:72503689-72503708 None:intergenic 50.0%
AGCATGTTGTGTGCACTCCT+TGG - Chr4:72504023-72504042 None:intergenic 50.0%
ATCAGGCTGCTTCAAGGCTT+TGG - Chr4:72503511-72503530 None:intergenic 50.0%
ATTCTGGGTGGCTAAGCTGA+GGG + Chr4:72504520-72504539 MsG0480022430.01.T01:CDS 50.0%
CATGGGTCCAGTTCATGATC+CGG + Chr4:72503836-72503855 MsG0480022430.01.T01:CDS 50.0%
GAACGTGACCCAAAAGAGGT+GGG - Chr4:72503685-72503704 None:intergenic 50.0%
GCTGCACCGTAAACTTTCCA+TGG - Chr4:72503546-72503565 None:intergenic 50.0%
GCTGCCATATGTCGCCATTT+AGG + Chr4:72504062-72504081 MsG0480022430.01.T01:CDS 50.0%
GGAAGAAGGAAACCAACCGT+CGG - Chr4:72503580-72503599 None:intergenic 50.0%
GGAGGCCCATGGAAAGTTTA+CGG + Chr4:72503537-72503556 MsG0480022430.01.T01:CDS 50.0%
GGTGGTTGGAGTAACAGGAA+TGG + Chr4:72503470-72503489 MsG0480022430.01.T01:CDS 50.0%
GTCCAGTTCATGATCCGGTT+CGG + Chr4:72503841-72503860 MsG0480022430.01.T01:CDS 50.0%
GTTGGAGTAACAGGAATGGC+TGG + Chr4:72503474-72503493 MsG0480022430.01.T01:CDS 50.0%
TACTCCAACCACCAGTGCTA+CGG - Chr4:72503463-72503482 None:intergenic 50.0%
TCCCAAGTGTACCTGTTTCC+TGG - Chr4:72504104-72504123 None:intergenic 50.0%
TGGGTCACGTTCCAGTTTGT+AGG + Chr4:72503693-72503712 MsG0480022430.01.T01:CDS 50.0%
! ACGAAATTCCGTAGCACTGG+TGG + Chr4:72503452-72503471 MsG0480022430.01.T01:CDS 50.0%
! AGCTGAGTTGACAGCGTCAA+AGG - Chr4:72503622-72503641 None:intergenic 50.0%
!! AATTCCGTAGCACTGGTGGT+TGG + Chr4:72503456-72503475 MsG0480022430.01.T01:CDS 50.0%
AGAAGGAAACCAACCGTCGG+CGG - Chr4:72503577-72503596 None:intergenic 55.0%
CATGGGCCTCCAAGACAATC+AGG - Chr4:72503528-72503547 None:intergenic 55.0%
CTGATTGTCTTGGAGGCCCA+TGG + Chr4:72503526-72503545 MsG0480022430.01.T01:CDS 55.0%
GACCGAACCGGATCATGAAC+TGG - Chr4:72503846-72503865 None:intergenic 55.0%
GATTCTGGGTGGCTAAGCTG+AGG + Chr4:72504519-72504538 MsG0480022430.01.T01:CDS 55.0%
GGAACGTGACCCAAAAGAGG+TGG - Chr4:72503686-72503705 None:intergenic 55.0%
! AAGCAACGGTGCCAGTTCTG+CGG + Chr4:72504414-72504433 MsG0480022430.01.T01:CDS 55.0%
! GCACTGGTGGTTGGAGTAAC+AGG + Chr4:72503465-72503484 MsG0480022430.01.T01:CDS 55.0%
! GCTGCTTCAAGGCTTTGGCT+AGG - Chr4:72503506-72503525 None:intergenic 55.0%
GAAACCAACCGTCGGCGGAG+CGG - Chr4:72503572-72503591 None:intergenic 65.0%
! CTCGCCGCTCCGCCGACGGT+TGG + Chr4:72503565-72503584 MsG0480022430.01.T01:CDS 80.0%
! GCAGCTCGCCGCTCCGCCGA+CGG + Chr4:72503561-72503580 MsG0480022430.01.T01:CDS 80.0%
Chromosome Type Strat End Strand Name
Chr4 gene 72503444 72504574 72503444 ID=MsG0480022430.01;Name=MsG0480022430.01
Chr4 mRNA 72503444 72504574 72503444 ID=MsG0480022430.01.T01;Parent=MsG0480022430.01;Name=MsG0480022430.01.T01;_AED=0.37;_eAED=0.37;_QI=0|-1|0|1|-1|1|1|0|376
Chr4 exon 72503444 72504574 72503444 ID=MsG0480022430.01.T01:exon:20568;Parent=MsG0480022430.01.T01
Chr4 CDS 72503444 72504574 72503444 ID=MsG0480022430.01.T01:cds;Parent=MsG0480022430.01.T01
Gene Sequence

>MsG0480022430.01.T01

ATGAATGTACGAAATTCCGTAGCACTGGTGGTTGGAGTAACAGGAATGGCTGGGCTAAGCCTAGCCAAAGCCTTGAAGCAGCCTGATTGTCTTGGAGGCCCATGGAAAGTTTACGGTGCAGCTCGCCGCTCCGCCGACGGTTGGTTTCCTTCTTCCATCCTTGATGGTTTCATCACCTTTGACGCTGTCAACTCAGCTGACACACATACCAAGCTGTTACCAATATCCCAAGAAGTCACCCACCTCTTTTGGGTCACGTTCCAGTTTGTAGGTGATGAAGAAGTTAACATCACCGTTAACAAAACCATGCTTCTTAATGTTCTCACCGTCCTCAAATCTTCTCCATCTTCCTCTCTCACCCATATAACACTCCAAACCGGAACCAAACATTACATGGGTCCAGTTCATGATCCGGTTCGGTCCACCAAACTTATATGCCACGAAACACCTTTTCATGAGAATATGCCACGACTCCCTTACCCAAATTTCTATTACGTGCTTGAGGATCTCGTTACATCCTATGCACCTTCGGTTACATACTCAATACATCGATCCTCTATCATAATAGGTATGTCACCAAGGAGTGCACACAACATGCTAATGAAGCTAGCAGTATATGCTGCCATATGTCGCCATTTAGGATTACCTTTTCTTTATCCAGGAAACAGGTACACTTGGGAGCATTTCTGTGATATGACGGATGTAGGCGTGCTTGCAAAGCAACATGTGTGGGCTGCAGTTACAGAAAATGCTAAGAACCAAGCGTTTAATTGCACAAACGGCGATGTTTTCACTTGGAAGAGTATGTGGATGTTGCTTAGTGAGGTTTTTGATGTTAAGTTTGTGGAGTTGAATGACAAGGAAGAGTTTGATTTGGTGGAGTTAATGCGTGATAAGGGTGAGATTTGGGACTTGATTGTCGAGGAATATGGGCTTCATAAGACCAAATTGCAGGAAATTGCTTCCTTTGAAGCAACGGTGCCAGTTCTGCGGTTTGAGTTTCAACATGTATCTAGTATGAACAAGAGTAAGGATTATGGGTTCTTTGAGTATGCTGATACGTTTAAGAGTATCAGATTCTGGGTGGCTAAGCTGAGGGAGATGAAACTCGTACCCGTCTACCAACATTGA
Protein sequence

>MsG0480022430.01.T01

MNVRNSVALVVGVTGMAGLSLAKALKQPDCLGGPWKVYGAARRSADGWFPSSILDGFITFDAVNSADTHTKLLPISQEVTHLFWVTFQFVGDEEVNITVNKTMLLNVLTVLKSSPSSSLTHITLQTGTKHYMGPVHDPVRSTKLICHETPFHENMPRLPYPNFYYVLEDLVTSYAPSVTYSIHRSSIIIGMSPRSAHNMLMKLAVYAAICRHLGLPFLYPGNRYTWEHFCDMTDVGVLAKQHVWAAVTENAKNQAFNCTNGDVFTWKSMWMLLSEVFDVKFVELNDKEEFDLVELMRDKGEIWDLIVEEYGLHKTKLQEIASFEATVPVLRFEFQHVSSMNKSKDYGFFEYADTFKSIRFWVAKLREMKLVPVYQH*