AlfalfaGEDB | MsG0480021505.01

M. sativa cultivar ZhongmuNo.1 / MsG0480021505.01

KEGG: K15201
GO: GO:0005515
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480021505.01.T01	XP_039689949.1	81.828	974	106	12	48	967	1	957	0	1494

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480021505.01.T01	Q9Y5Q9	22.015	804	483	22	220	967	171	886	2.16E-38	158

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480021505.01.T01	G7JNI9	81.641	975	105	13	48	967	1	956	0.0	1484

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0180003773.01	MsG0480021505.01	0.809628	1.722456e-50	1.016507e-47
MsG0480021505.01	MsG0780037468.01	0.804782	1.831403e-49	9.527273e-47

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PPI

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Gene1	Gene2	Type
MsG0780039389.01	MsG0480021505.01	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480021505.01.T01	MTR_4g074860	81.641	975	105	13	48	967	1	956	0.0	1484
MsG0480021505.01.T01	MTR_4g074860	82.936	838	95	12	48	856	1	819	0.0	1293
MsG0480021505.01.T01	MTR_4g079390	70.031	971	206	22	48	967	1	937	0.0	1246
MsG0480021505.01.T01	MTR_4g074860	81.453	771	95	12	48	789	1	752	0.0	1154
MsG0480021505.01.T01	MTR_4g074690	70.986	355	64	5	48	386	1	332	3.74e-153	456
MsG0480021505.01.T01	MTR_4g074700	68.317	101	11	2	318	397	1	101	5.75e-33	123

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480021505.01.T01	AT1G17680	39.689	771	389	13	222	966	175	895	1.61e-164	505
MsG0480021505.01.T01	AT1G17680	39.689	771	389	13	222	966	175	895	1.61e-164	505
MsG0480021505.01.T01	AT1G17680	39.689	771	389	13	222	966	175	895	1.61e-164	505

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Find 202 sgRNAs with CRISPR-Local

Find 1328 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACCTTGTTTAGGATCTG+GGG	0.616944	4:-58765332	None:intergenic
AAACTACCCCTACAATCTCA+CGG	0.629498	4:+58752324	MsG0480021505.01.T01:CDS
AAAGATTATTGTTCCGTTTG+AGG	0.352442	4:+58769220	MsG0480021505.01.T01:CDS
AAAGCCGAGGCAGTGGCCTC+TGG	0.403885	4:+58764665	MsG0480021505.01.T01:CDS
AAAGTCAAAATGAGGATGTA+TGG	0.437193	4:+58758282	MsG0480021505.01.T01:CDS
AAATGAATAACCATCTTACA+TGG	0.538073	4:-58754999	None:intergenic
AACTGATTGCCATGCCTTGC+AGG	0.261328	4:+58768916	MsG0480021505.01.T01:CDS
AAGAAGAGAAAACGATACGG+TGG	0.664648	4:+58752154	MsG0480021505.01.T01:CDS
AAGATTAACCAATGGATTCT+TGG	0.301139	4:-58765729	None:intergenic
AAGGATCATGTAACCTCAAA+CGG	0.483626	4:-58769233	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAAAAATGGTGTCTTGGA+CGG	-	Chr4:58749630-58749649	None:intergenic	30.0%
AAAAAAAGAGGTAGGCAAAA+AGG	+	Chr4:58753629-58753648	MsG0480021505.01.T01:intron	30.0%
AAAAAAGTTGCTTGAGGAAA+AGG	+	Chr4:58764622-58764641	MsG0480021505.01.T01:CDS	30.0%
AAAGGAAAGGTCTTCTATTT+AGG	+	Chr4:58760706-58760725	MsG0480021505.01.T01:intron	30.0%
AAAGTCAAAATGAGGATGTA+TGG	+	Chr4:58758282-58758301	MsG0480021505.01.T01:CDS	30.0%
AAAGTGACTACATGAATTCA+AGG	-	Chr4:58768751-58768770	None:intergenic	30.0%
AAATGCGTCTAGAAATTTGT+AGG	-	Chr4:58766730-58766749	None:intergenic	30.0%
AAATTATCAAAAAGCTGCTG+AGG	+	Chr4:58756782-58756801	MsG0480021505.01.T01:CDS	30.0%
AAATTGTGTGAGAGAAAAGT+TGG	+	Chr4:58757051-58757070	MsG0480021505.01.T01:intron	30.0%
AAATTTCAGCAGTTTCCATT+TGG	+	Chr4:58760962-58760981	MsG0480021505.01.T01:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr4	gene	58749203	58769240	58749203	ID=MsG0480021505.01;Name=MsG0480021505.01
Chr4	mRNA	58749203	58769240	58749203	ID=MsG0480021505.01.T01;Parent=MsG0480021505.01;Name=MsG0480021505.01.T01;_AED=0.49;_eAED=0.53;_QI=0\|0.41\|0.38\|0.94\|0.52\|0.55\|18\|0\|967
Chr4	exon	58749203	58749301	58749203	ID=MsG0480021505.01.T01:exon:19664;Parent=MsG0480021505.01.T01
Chr4	exon	58751966	58752345	58751966	ID=MsG0480021505.01.T01:exon:19665;Parent=MsG0480021505.01.T01
Chr4	exon	58753008	58753113	58753008	ID=MsG0480021505.01.T01:exon:19666;Parent=MsG0480021505.01.T01
Chr4	exon	58754343	58754409	58754343	ID=MsG0480021505.01.T01:exon:19667;Parent=MsG0480021505.01.T01
Chr4	exon	58754823	58755010	58754823	ID=MsG0480021505.01.T01:exon:19668;Parent=MsG0480021505.01.T01
Chr4	exon	58756651	58756866	58756651	ID=MsG0480021505.01.T01:exon:19669;Parent=MsG0480021505.01.T01
Chr4	exon	58757261	58757509	58757261	ID=MsG0480021505.01.T01:exon:19670;Parent=MsG0480021505.01.T01
Chr4	exon	58758152	58758303	58758152	ID=MsG0480021505.01.T01:exon:19671;Parent=MsG0480021505.01.T01
Chr4	exon	58758368	58758408	58758368	ID=MsG0480021505.01.T01:exon:19672;Parent=MsG0480021505.01.T01
Chr4	exon	58759921	58760052	58759921	ID=MsG0480021505.01.T01:exon:19673;Parent=MsG0480021505.01.T01
Chr4	exon	58760121	58760287	58760121	ID=MsG0480021505.01.T01:exon:19674;Parent=MsG0480021505.01.T01
Chr4	exon	58762427	58762566	58762427	ID=MsG0480021505.01.T01:exon:19675;Parent=MsG0480021505.01.T01
Chr4	exon	58764604	58764730	58764604	ID=MsG0480021505.01.T01:exon:19676;Parent=MsG0480021505.01.T01
Chr4	exon	58764797	58764852	58764797	ID=MsG0480021505.01.T01:exon:19677;Parent=MsG0480021505.01.T01
Chr4	exon	58764957	58765096	58764957	ID=MsG0480021505.01.T01:exon:19678;Parent=MsG0480021505.01.T01
Chr4	exon	58765317	58765431	58765317	ID=MsG0480021505.01.T01:exon:19679;Parent=MsG0480021505.01.T01
Chr4	exon	58765568	58765758	58765568	ID=MsG0480021505.01.T01:exon:19680;Parent=MsG0480021505.01.T01
Chr4	exon	58768903	58769240	58768903	ID=MsG0480021505.01.T01:exon:19681;Parent=MsG0480021505.01.T01
Chr4	CDS	58749203	58749301	58749203	ID=MsG0480021505.01.T01:cds;Parent=MsG0480021505.01.T01
Chr4	CDS	58751966	58752345	58751966	ID=MsG0480021505.01.T01:cds;Parent=MsG0480021505.01.T01
Chr4	CDS	58753008	58753113	58753008	ID=MsG0480021505.01.T01:cds;Parent=MsG0480021505.01.T01
Chr4	CDS	58754343	58754409	58754343	ID=MsG0480021505.01.T01:cds;Parent=MsG0480021505.01.T01
Chr4	CDS	58754823	58755010	58754823	ID=MsG0480021505.01.T01:cds;Parent=MsG0480021505.01.T01
Chr4	CDS	58756651	58756866	58756651	ID=MsG0480021505.01.T01:cds;Parent=MsG0480021505.01.T01
Chr4	CDS	58757261	58757509	58757261	ID=MsG0480021505.01.T01:cds;Parent=MsG0480021505.01.T01
Chr4	CDS	58758152	58758303	58758152	ID=MsG0480021505.01.T01:cds;Parent=MsG0480021505.01.T01
Chr4	CDS	58758368	58758408	58758368	ID=MsG0480021505.01.T01:cds;Parent=MsG0480021505.01.T01
Chr4	CDS	58759921	58760052	58759921	ID=MsG0480021505.01.T01:cds;Parent=MsG0480021505.01.T01
Chr4	CDS	58760121	58760287	58760121	ID=MsG0480021505.01.T01:cds;Parent=MsG0480021505.01.T01
Chr4	CDS	58762427	58762566	58762427	ID=MsG0480021505.01.T01:cds;Parent=MsG0480021505.01.T01
Chr4	CDS	58764604	58764730	58764604	ID=MsG0480021505.01.T01:cds;Parent=MsG0480021505.01.T01
Chr4	CDS	58764797	58764852	58764797	ID=MsG0480021505.01.T01:cds;Parent=MsG0480021505.01.T01
Chr4	CDS	58764957	58765096	58764957	ID=MsG0480021505.01.T01:cds;Parent=MsG0480021505.01.T01
Chr4	CDS	58765317	58765431	58765317	ID=MsG0480021505.01.T01:cds;Parent=MsG0480021505.01.T01
Chr4	CDS	58765568	58765758	58765568	ID=MsG0480021505.01.T01:cds;Parent=MsG0480021505.01.T01
Chr4	CDS	58768903	58769240	58768903	ID=MsG0480021505.01.T01:cds;Parent=MsG0480021505.01.T01

Gene Sequence

>MsG0480021505.01.T01

ATGTTCAACGATGAAATGAAGGAACCTTATGTTTGCGAATCAGTTTCGGGTATTGTTGGAAGCATTTTGTTGATTCTTACTAATTATATTTATATAAATGGTTCTTTATGCAAATCCCTCTCTGGTTCATCACTCAGTAGAATGGAAGAGATTAACCAGAAGGAGGAGGAAGATCATCCAAGGGCGGTAGAAGACAGCGACAATGCCAATGAAGACACAGGGTATGGTACGGAAGAGAACGGAGAAGAAGAAGAAGAAGAAGACGCGTCAGAGAAGAAGAAGAAGAGAAGAAGAGAAAACGATACGGTGGATGAAGATGATCAATTCATCTTCGGCGACGGTGTAAATCCTTTGGACTTCGTTCGTAACAATGATTCCGGTGTTAATTTGTACCAGAAATTTAAAGATTACCACCAGAAATCCATGGAATACCGAGCTCTCGATAACCGAAAGCGAAAAACTACCCCTACAATCTCACGTGAAGAGACCTCTTCTAAGAAGGCTAGGGAAGATGATATTTTTGGGGTAAACCCAGCTGAGGTTGAGGAATTTATAAATTTTGGAGAGGGCAAGAGACCAAGAAAGTCCACATCAGATATGATAGAGCCTGAAACATGTTATAAATTGGAGACATTCCTCACGTTACAAGATGGCTATATCTGTTTGCATGAAGTTGTCAGGCTGGAACCAAGTTTACCTGACTCGTATCACACCCTTGGACTTGTCCATGGTGCAATTGGGGATCACGAAAATGAAATGGGTTTTTACATGATTACTGCTCATTTGACTCCAAAAGATCCAACGCTTTGGAAGACGCTTTATGGTGGTCCATGTAAGATGGGAACCATTTTCAAATGCAGAGAACAAAATGATATTGGTCAAGCCAGTTATTGTATTTCGAAAGCAATAAAAGCAGACCCCCAAGATAGTAGTCTTAGGAGTCATCAAGCAATGCTTTATGCTGAAAGTCAAAATTATCAAAAAGCTGCTGAGGCTTATGAACAAGTATATCAACTTTGTCGTGAAAATGTTGATGCACTAAAAGCAGCAGCTAAGTTCTACCAAAAGTGTGGTCAAGTTGAACGCTCAATTTGCATTCTCGAAGACTATCTGAAGAATAAACCAGATGGAGTAAATGCAAGTGTAGTTGATCTACTTGGTGCCATATTGATGGAAATAAAGGCGCATGACAGAGCTCTTCAGTACATAGAACAATCTCAAGTGGTTGGAAAAGAATTGCCCTTAAATTTGAAAGTTAAAGCTGGAATCTGCCATGTTCATCTTGGAAACTTGGAAATGGCTCAGGTTTTTTTCAATGATTTGAAACCAGAGAATGCAAGCAAGCATGTTGAGTCGATCACCGAGGTCGCAGACTCATTTATGGGTCTTGGACATTATAATTCTGCATTGAATTATTTTAAGATGTTGGAAGGAAAAAGTCAAAATGAGGATGTATGTCAACTTGATTTTATTAGTACAGATCTGCCAGGATTAATAGATTTTGTTTCAGTCCTAGAAACACTACAAGATGATGTTGAAGCACGCATAACTTTGGCTTCCCTTCTAGTTGAGGAGGGGAAAGAAAATGAAGCCATTTCCTTGCTGTCTCCTCCAAAGGAATCTGGTACTGACTCTGGTGAAGCACATTCTGAAAAGCCAAATAGATGGTGGGTTGATGTGAGAATAAAACTTAAGCTCTGTAACATATTTCAGATCAGAGGGATGCTTACTGATTTTGTGGATGTATGTTTCCCTTTAATACGTGAATCTTTGAATGTTGCAACTCCTAAACGAAAGAGCAAACTGTTGCTACTGGGCAAATCAAAGAAGAAGCGTCTCTCCAAAAGTGATCTGCTTAAAAGGGTAGAGAAACTTGCTGCTCCGGAAACAGATAGTGTATTTCGAGGATTCAAGAATGTAGCCACATCAGCTGATCGGTTGAAGGCTTCCAGAGCAAAAAAGTTGCTTGAGGAAAAGGCAATTGAGAAGGAGAAAAGGAAAGCCGAGGCAGTGGCCTCTGGAATTGACTGGCGAAGTGATGATGACTCGGATGATGAGCTTCAGATTTTTTGTATATTGCGTGGTATGTCTCCAGAAACCAAACACAGAATCTCCCTTGTTATCAATGTACAGTTGTGCAATGCATTAGCATCCTTGCAAATGTATAGGGAAGCATTAGAGATTATCAATCTCTCTCTGAAATCGGCTCATATTTCTCTGTCTGCTGAGAAGAATGAGAAGCTTCGATCTCTTGGAGTTCAAATGGCATACAGCACCCCAGATCCTAAACAAGGTTTTGATTGTGTAAAAGGCATTGTTAAACAACATGCACAGAGTGTTGCAGCTTGGAATTGCTACTACAAGGTCATCTCAAGATTGGAAAACCGAGATACAAGACATGACAAATTTTTACGTGATATGCAAGAAAAATATGTGGATTGTGTGCCTCCTATCCTCATTTCTGCGCATCAGTTTACTTTATGTAGCCATCATCAAGACGCGGCAAGGAAATACCTTGAAGCTTATAAACTTTTGCCCAAGAATCCATTGGTTAATCTTTGTGTTGGTGAAACTGAACTAACTGATTGCCATGCCTTGCAGGAATCTACTGAACTAATTGATTGCCCAGCCTCGCAGGAATCTTTATATAACATAGCTCGCGCATACCATCATGTTGGTCTTGTAACACTGGCAGCAATATATTATGAGAAGGTGATTGCTATTAAGGAGAGAGACTATCCAATTCCAAAATTTGAAAATGAGAATATTGACGTCAATGAAAATTCCAAACCTGGTTACTGCGACCTTCGCAGAGAGGCAGCTTACAATCTACATTTAATCTACAAAAAGAGTGGTGCTCTCGATCTTGCTAGACAAGTTTTGAAAGATTATTGTTCCGTTTGA

Protein sequence

>MsG0480021505.01.T01

MFNDEMKEPYVCESVSGIVGSILLILTNYIYINGSLCKSLSGSSLSRMEEINQKEEEDHPRAVEDSDNANEDTGYGTEENGEEEEEEDASEKKKKRRRENDTVDEDDQFIFGDGVNPLDFVRNNDSGVNLYQKFKDYHQKSMEYRALDNRKRKTTPTISREETSSKKAREDDIFGVNPAEVEEFINFGEGKRPRKSTSDMIEPETCYKLETFLTLQDGYICLHEVVRLEPSLPDSYHTLGLVHGAIGDHENEMGFYMITAHLTPKDPTLWKTLYGGPCKMGTIFKCREQNDIGQASYCISKAIKADPQDSSLRSHQAMLYAESQNYQKAAEAYEQVYQLCRENVDALKAAAKFYQKCGQVERSICILEDYLKNKPDGVNASVVDLLGAILMEIKAHDRALQYIEQSQVVGKELPLNLKVKAGICHVHLGNLEMAQVFFNDLKPENASKHVESITEVADSFMGLGHYNSALNYFKMLEGKSQNEDVCQLDFISTDLPGLIDFVSVLETLQDDVEARITLASLLVEEGKENEAISLLSPPKESGTDSGEAHSEKPNRWWVDVRIKLKLCNIFQIRGMLTDFVDVCFPLIRESLNVATPKRKSKLLLLGKSKKKRLSKSDLLKRVEKLAAPETDSVFRGFKNVATSADRLKASRAKKLLEEKAIEKEKRKAEAVASGIDWRSDDDSDDELQIFCILRGMSPETKHRISLVINVQLCNALASLQMYREALEIINLSLKSAHISLSAEKNEKLRSLGVQMAYSTPDPKQGFDCVKGIVKQHAQSVAAWNCYYKVISRLENRDTRHDKFLRDMQEKYVDCVPPILISAHQFTLCSHHQDAARKYLEAYKLLPKNPLVNLCVGETELTDCHALQESTELIDCPASQESLYNIARAYHHVGLVTLAAIYYEKVIAIKERDYPIPKFENENIDVNENSKPGYCDLRREAAYNLHLIYKKSGALDLARQVLKDYCSV*