Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480022278.01.T01 | XP_003608122.2 | 96 | 400 | 16 | 0 | 15 | 414 | 1 | 400 | 0 | 799 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480022278.01.T01 | O49523 | 53.03 | 396 | 178 | 5 | 18 | 406 | 19 | 413 | 2.02E-146 | 425 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480022278.01.T01 | G7JPP4 | 96.000 | 400 | 16 | 0 | 15 | 414 | 1 | 400 | 0.0 | 799 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0480022278.01 | MsG0680034418.01 | 0.800821 | 1.204258e-48 | 5.661882e-46 |
| MsG0280009232.01 | MsG0480022278.01 | 0.804704 | 1.901214e-49 | 9.870355e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480022278.01.T01 | MTR_4g087830 | 96.000 | 400 | 16 | 0 | 15 | 414 | 1 | 400 | 0.0 | 799 |
| MsG0480022278.01.T01 | MTR_4g087810 | 91.228 | 399 | 35 | 0 | 14 | 412 | 9 | 407 | 0.0 | 761 |
| MsG0480022278.01.T01 | MTR_2g015690 | 61.364 | 396 | 145 | 4 | 17 | 406 | 19 | 412 | 1.20e-175 | 496 |
| MsG0480022278.01.T01 | MTR_4g077070 | 39.310 | 435 | 220 | 10 | 15 | 414 | 97 | 522 | 4.79e-98 | 303 |
| MsG0480022278.01.T01 | MTR_4g080100 | 40.686 | 408 | 200 | 7 | 21 | 397 | 31 | 427 | 9.50e-97 | 296 |
| MsG0480022278.01.T01 | MTR_7g096120 | 38.005 | 421 | 224 | 7 | 18 | 407 | 74 | 488 | 7.97e-94 | 291 |
| MsG0480022278.01.T01 | MTR_7g096140 | 38.010 | 392 | 212 | 6 | 18 | 384 | 74 | 459 | 4.89e-89 | 277 |
| MsG0480022278.01.T01 | MTR_7g006400 | 39.249 | 293 | 145 | 8 | 18 | 302 | 105 | 372 | 1.28e-56 | 194 |
| MsG0480022278.01.T01 | MTR_7g081645 | 34.688 | 369 | 192 | 14 | 17 | 359 | 74 | 419 | 3.43e-54 | 186 |
| MsG0480022278.01.T01 | MTR_5g013230 | 33.075 | 387 | 195 | 12 | 18 | 364 | 135 | 497 | 1.20e-51 | 182 |
| MsG0480022278.01.T01 | MTR_7g081620 | 32.000 | 400 | 200 | 15 | 18 | 363 | 69 | 450 | 1.15e-47 | 169 |
| MsG0480022278.01.T01 | MTR_4g099510 | 33.246 | 382 | 194 | 12 | 17 | 364 | 128 | 482 | 2.87e-46 | 167 |
| MsG0480022278.01.T01 | MTR_1995s0010 | 35.586 | 222 | 116 | 4 | 145 | 341 | 1 | 220 | 4.87e-37 | 134 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480022278.01.T01 | AT4G18550 | 53.030 | 396 | 178 | 5 | 18 | 406 | 19 | 413 | 2.06e-147 | 425 |
| MsG0480022278.01.T01 | AT4G18550 | 53.030 | 396 | 178 | 5 | 18 | 406 | 36 | 430 | 2.55e-147 | 426 |
| MsG0480022278.01.T01 | AT1G06250 | 49.100 | 389 | 190 | 4 | 18 | 399 | 5 | 392 | 2.92e-135 | 394 |
| MsG0480022278.01.T01 | AT4G18550 | 52.249 | 289 | 131 | 4 | 18 | 304 | 36 | 319 | 9.98e-104 | 310 |
| MsG0480022278.01.T01 | AT1G51440 | 41.429 | 420 | 200 | 12 | 17 | 401 | 86 | 494 | 2.03e-92 | 288 |
| MsG0480022278.01.T01 | AT2G30550 | 39.573 | 422 | 211 | 12 | 21 | 407 | 104 | 516 | 6.49e-91 | 284 |
| MsG0480022278.01.T01 | AT1G06800 | 39.535 | 430 | 215 | 14 | 21 | 414 | 88 | 508 | 2.40e-90 | 282 |
| MsG0480022278.01.T01 | AT1G06250 | 49.640 | 278 | 133 | 3 | 129 | 399 | 1 | 278 | 8.88e-90 | 274 |
| MsG0480022278.01.T01 | AT2G42690 | 36.983 | 411 | 223 | 7 | 15 | 399 | 1 | 401 | 1.42e-79 | 251 |
| MsG0480022278.01.T01 | AT1G30370 | 35.802 | 405 | 222 | 10 | 18 | 397 | 114 | 505 | 9.49e-79 | 253 |
| MsG0480022278.01.T01 | AT2G30550 | 39.548 | 354 | 176 | 11 | 21 | 345 | 104 | 448 | 2.24e-74 | 239 |
| MsG0480022278.01.T01 | AT1G06800 | 39.888 | 356 | 175 | 13 | 21 | 346 | 88 | 434 | 8.33e-73 | 235 |
| MsG0480022278.01.T01 | AT2G31690 | 38.889 | 288 | 160 | 6 | 18 | 302 | 88 | 362 | 6.94e-58 | 197 |
| MsG0480022278.01.T01 | AT1G05800 | 35.165 | 364 | 194 | 10 | 18 | 360 | 80 | 422 | 2.18e-57 | 195 |
| MsG0480022278.01.T01 | AT2G44810 | 31.937 | 382 | 196 | 11 | 18 | 359 | 86 | 443 | 1.90e-50 | 176 |
| MsG0480022278.01.T01 | AT4G16820 | 33.990 | 406 | 197 | 15 | 10 | 375 | 119 | 493 | 1.47e-49 | 176 |
| MsG0480022278.01.T01 | AT2G44810 | 31.915 | 376 | 192 | 11 | 24 | 359 | 2 | 353 | 7.18e-49 | 170 |
Find 90 sgRNAs with CRISPR-Local
Find 133 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGGAGGGTGGTGGAGAATA+AGG | 0.186405 | 4:+70566959 | MsG0480022278.01.T01:CDS |
| TCCAAAGTATATTTGGAAAA+AGG | 0.200965 | 4:+70565017 | MsG0480022278.01.T01:CDS |
| TGTAACTGCACATTCGATTT+AGG | 0.216210 | 4:-70565503 | None:intergenic |
| TATGCAAGAAGAAGACTATT+TGG | 0.263873 | 4:-70566726 | None:intergenic |
| TAATTGTCGTTATTCTAAAA+AGG | 0.269491 | 4:+70564986 | MsG0480022278.01.T01:CDS |
| CGTAAGTACTTACTACATTA+TGG | 0.283055 | 4:+70564903 | MsG0480022278.01.T01:CDS |
| TAAAGGAGGGTTTAATTTAG+AGG | 0.288625 | 4:+70566866 | MsG0480022278.01.T01:CDS |
| TTAACAGCTAAGGAAGCATT+AGG | 0.303858 | 4:+70565380 | MsG0480022278.01.T01:intron |
| CCTGTCACATTATTTGCATT+TGG | 0.305993 | 4:+70566609 | MsG0480022278.01.T01:CDS |
| TTCAAAGGATGCTTGGAGTA+TGG | 0.306662 | 4:+70565127 | MsG0480022278.01.T01:CDS |
| CGCTGCACTATCTCTTGCTT+TGG | 0.312823 | 4:-70565084 | None:intergenic |
| AATCATGCGTTCTAAATTGT+AGG | 0.336214 | 4:+70567043 | MsG0480022278.01.T01:CDS |
| GTTTATTTGCATGGAATTGC+AGG | 0.337895 | 4:+70566831 | MsG0480022278.01.T01:CDS |
| CTTGGAGTATGGAAACAAAT+TGG | 0.350231 | 4:+70565138 | MsG0480022278.01.T01:CDS |
| CGTGTTGGAAATTCTAACTT+TGG | 0.360641 | 4:+70566639 | MsG0480022278.01.T01:CDS |
| AATATCACATTCCTGAGAAT+TGG | 0.362474 | 4:+70566940 | MsG0480022278.01.T01:CDS |
| CTAGCACTAGAATCAGCTAT+TGG | 0.371790 | 4:-70565569 | None:intergenic |
| TGCTTGGAGAGGGACAATTC+AGG | 0.376867 | 4:+70565421 | MsG0480022278.01.T01:CDS |
| TGATGGTACTTGGAAGCTAA+TGG | 0.402739 | 4:+70566998 | MsG0480022278.01.T01:CDS |
| GTGTGAGGAAGAAATAGATA+TGG | 0.409356 | 4:+70564800 | MsG0480022278.01.T01:CDS |
| AATAAATTCAACATACCAAA+AGG | 0.412590 | 4:+70566567 | MsG0480022278.01.T01:CDS |
| AAGTAAGTGGAAAGGTCTAT+TGG | 0.420412 | 4:+70564860 | MsG0480022278.01.T01:CDS |
| CTATTTCTTCCTCACACAAA+TGG | 0.420752 | 4:-70564794 | None:intergenic |
| ACTTGCAACTATAAGTTCTA+TGG | 0.425826 | 4:+70566533 | MsG0480022278.01.T01:CDS |
| GGATGTTGCATACAAATACT+TGG | 0.442993 | 4:-70565063 | None:intergenic |
| TTTGCTCAAGCTACATATGA+TGG | 0.446546 | 4:+70564930 | MsG0480022278.01.T01:CDS |
| TGATGGTTTCAACTTTGAAA+AGG | 0.449579 | 4:+70564947 | MsG0480022278.01.T01:CDS |
| TAACAGCTAAGGAAGCATTA+GGG | 0.450387 | 4:+70565381 | MsG0480022278.01.T01:intron |
| TGGAGGGTGGTGGAGAATAA+GGG | 0.455462 | 4:+70566960 | MsG0480022278.01.T01:CDS |
| TGATTCTAGTGCTAGAAAAC+AGG | 0.455743 | 4:+70565577 | MsG0480022278.01.T01:CDS |
| TTCAACAATCTGATGGTACT+TGG | 0.456136 | 4:+70566988 | MsG0480022278.01.T01:CDS |
| AACATGGAGGTTTATTTGCA+TGG | 0.461774 | 4:+70566822 | MsG0480022278.01.T01:CDS |
| CTATTAAACAAAAGTAATGA+TGG | 0.464521 | 4:+70566906 | MsG0480022278.01.T01:CDS |
| AATCTAAGTACTTGAAGAGT+GGG | 0.469182 | 4:+70566787 | MsG0480022278.01.T01:CDS |
| AACTGTCGTTGGACACAGCT+TGG | 0.475044 | 4:+70566503 | MsG0480022278.01.T01:CDS |
| TCCACCACCCTCCAATTCTC+AGG | 0.477117 | 4:-70566951 | None:intergenic |
| TTGGTCACAGAATACTTGTA+AGG | 0.480981 | 4:-70565044 | None:intergenic |
| GGAGGGACATAGTTGTTGCT+TGG | 0.481190 | 4:+70565405 | MsG0480022278.01.T01:CDS |
| GCTTGGAGAGGGACAATTCA+GGG | 0.489035 | 4:+70565422 | MsG0480022278.01.T01:CDS |
| TGCATATTCAAAGGTGGGAG+AGG | 0.502064 | 4:+70566743 | MsG0480022278.01.T01:CDS |
| CTTCTTGCATATTCAAAGGT+GGG | 0.504433 | 4:+70566738 | MsG0480022278.01.T01:CDS |
| GAGTATGGAAACAAATTGGA+TGG | 0.512934 | 4:+70565142 | MsG0480022278.01.T01:CDS |
| ACTGTCGTTGGACACAGCTT+GGG | 0.515205 | 4:+70566504 | MsG0480022278.01.T01:CDS |
| GGACTGAATATAAGTGGTGC+AGG | 0.517895 | 4:-70565482 | None:intergenic |
| GACAATTCAGGGTGCAGAGT+GGG | 0.520098 | 4:+70565433 | MsG0480022278.01.T01:CDS |
| GAAAAGGCATCTAAGTATGC+AGG | 0.523914 | 4:+70564963 | MsG0480022278.01.T01:CDS |
| TCCTGAGAATTGGAGGGTGG+TGG | 0.527608 | 4:+70566950 | MsG0480022278.01.T01:CDS |
| CATGGAATTGCAGGAACACA+AGG | 0.532517 | 4:+70566840 | MsG0480022278.01.T01:CDS |
| ACATAGTTGTTGCTTGGAGA+GGG | 0.533659 | 4:+70565411 | MsG0480022278.01.T01:CDS |
| CTAAGGAAGCATTAGGGAGG+AGG | 0.534094 | 4:+70565387 | MsG0480022278.01.T01:CDS |
| AACTTAGTGGCAAAAGTAAG+TGG | 0.534655 | 4:+70564847 | MsG0480022278.01.T01:CDS |
| ATCACATTCCTGAGAATTGG+AGG | 0.536099 | 4:+70566943 | MsG0480022278.01.T01:CDS |
| GAAATTAGCATAACTGTCGT+TGG | 0.536154 | 4:+70566492 | MsG0480022278.01.T01:CDS |
| CCAAATGCAAATAATGTGAC+AGG | 0.536537 | 4:-70566609 | None:intergenic |
| GATTTAGGACTGAATATAAG+TGG | 0.537730 | 4:-70565488 | None:intergenic |
| TCTTCTTGCATATTCAAAGG+TGG | 0.538213 | 4:+70566737 | MsG0480022278.01.T01:CDS |
| TGTGAGGAAGAAATAGATAT+GGG | 0.539394 | 4:+70564801 | MsG0480022278.01.T01:CDS |
| GCAGGAACACAAGGAAGTAA+AGG | 0.539942 | 4:+70566849 | MsG0480022278.01.T01:CDS |
| TCTTCTTCTTGCATATTCAA+AGG | 0.541516 | 4:+70566734 | MsG0480022278.01.T01:CDS |
| AAACGAGATTAGCAGACTTG+TGG | 0.547519 | 4:+70566452 | MsG0480022278.01.T01:CDS |
| TGGGGTTAGTGCACATAACA+TGG | 0.566949 | 4:+70566806 | MsG0480022278.01.T01:CDS |
| AGTATGGAAACAAATTGGAT+GGG | 0.568664 | 4:+70565143 | MsG0480022278.01.T01:CDS |
| GCATTTGGTTCACCTCGTGT+TGG | 0.574021 | 4:+70566624 | MsG0480022278.01.T01:CDS |
| AAATCTAAGTACTTGAAGAG+TGG | 0.574558 | 4:+70566786 | MsG0480022278.01.T01:CDS |
| GACATAGTTGTTGCTTGGAG+AGG | 0.575425 | 4:+70565410 | MsG0480022278.01.T01:CDS |
| GTTGCTGTTGCCACTGATGA+AGG | 0.576148 | 4:+70565170 | MsG0480022278.01.T01:CDS |
| TTCAACATTACCTTCATCAG+TGG | 0.579087 | 4:-70565180 | None:intergenic |
| ATAAATTCAACATACCAAAA+GGG | 0.580395 | 4:+70566568 | MsG0480022278.01.T01:CDS |
| GGTGGTGGAGAATAAGGGTA+TGG | 0.582115 | 4:+70566965 | MsG0480022278.01.T01:CDS |
| TAAGGAAGCATTAGGGAGGA+GGG | 0.586465 | 4:+70565388 | MsG0480022278.01.T01:CDS |
| TTACGTAGGTCAATGTGTAA+AGG | 0.596130 | 4:-70564885 | None:intergenic |
| GGAACACAAGGAAGTAAAGG+AGG | 0.618211 | 4:+70566852 | MsG0480022278.01.T01:CDS |
| GGTATGGTTCAACAATCTGA+TGG | 0.619750 | 4:+70566981 | MsG0480022278.01.T01:CDS |
| AGTGGCAAAAGTAAGTGGAA+AGG | 0.625837 | 4:+70564852 | MsG0480022278.01.T01:CDS |
| TAAAAGTGTCCATTTGTGTG+AGG | 0.629643 | 4:+70564785 | MsG0480022278.01.T01:CDS |
| GTATGGAAACAAATTGGATG+GGG | 0.630148 | 4:+70565144 | MsG0480022278.01.T01:CDS |
| TCGAATGTGCAGTTACACAA+TGG | 0.630838 | 4:+70565509 | MsG0480022278.01.T01:CDS |
| TGGGTAGCATAGCAAGAACA+TGG | 0.635845 | 4:+70564820 | MsG0480022278.01.T01:CDS |
| GTCGTTGGACACAGCTTGGG+TGG | 0.639883 | 4:+70566507 | MsG0480022278.01.T01:CDS |
| AGAACATGGAGAGAACTTAG+TGG | 0.643312 | 4:+70564834 | MsG0480022278.01.T01:CDS |
| GAGGAATTAGAAATCGACGC+TGG | 0.655608 | 4:+70566762 | MsG0480022278.01.T01:CDS |
| TCACATTCCTGAGAATTGGA+GGG | 0.659641 | 4:+70566944 | MsG0480022278.01.T01:CDS |
| ATCTAAGTACTTGAAGAGTG+GGG | 0.675113 | 4:+70566788 | MsG0480022278.01.T01:CDS |
| AAGTTAGAATTTCCAACACG+AGG | 0.679774 | 4:-70566636 | None:intergenic |
| CATTCCTGAGAATTGGAGGG+TGG | 0.687333 | 4:+70566947 | MsG0480022278.01.T01:CDS |
| GAACACAAGGAAGTAAAGGA+GGG | 0.689646 | 4:+70566853 | MsG0480022278.01.T01:CDS |
| AATGTAGTAAGTACTTACGT+AGG | 0.694414 | 4:-70564899 | None:intergenic |
| CAGCTAAGGAAGCATTAGGG+AGG | 0.703114 | 4:+70565384 | MsG0480022278.01.T01:intron |
| GGACAATTCAGGGTGCAGAG+TGG | 0.708525 | 4:+70565432 | MsG0480022278.01.T01:CDS |
| GGTTAGTGCACATAACATGG+AGG | 0.759022 | 4:+70566809 | MsG0480022278.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAAAAAGTATAACTTTTTT+TGG | + | Chr4:70566177-70566196 | MsG0480022278.01.T01:intron | 10.0% |
| !!! | ATAGAAATCATTTTTTTTAA+AGG | + | Chr4:70566070-70566089 | MsG0480022278.01.T01:intron | 10.0% |
| !!! | TCAAAATTTTAATATTGATT+TGG | + | Chr4:70565457-70565476 | MsG0480022278.01.T01:CDS | 10.0% |
| !!! | TTTAATTTTACTATGTATTT+AGG | - | Chr4:70566223-70566242 | None:intergenic | 10.0% |
| !! | AACTTAATAAAGAAAACTTT+AGG | - | Chr4:70566010-70566029 | None:intergenic | 15.0% |
| !!! | ATATTTATAGTACTTGATTT+TGG | + | Chr4:70566382-70566401 | MsG0480022278.01.T01:intron | 15.0% |
| !!! | TAGAAATTCACTTTTTTTTA+AGG | - | Chr4:70565860-70565879 | None:intergenic | 15.0% |
| !! | AATAAATTCAACATACCAAA+AGG | + | Chr4:70566567-70566586 | MsG0480022278.01.T01:CDS | 20.0% |
| !! | AGCATAACTTAATAATCTTA+AGG | - | Chr4:70566106-70566125 | None:intergenic | 20.0% |
| !! | ATAAATTCAACATACCAAAA+GGG | + | Chr4:70566568-70566587 | MsG0480022278.01.T01:CDS | 20.0% |
| !! | CTATTAAACAAAAGTAATGA+TGG | + | Chr4:70566906-70566925 | MsG0480022278.01.T01:CDS | 20.0% |
| !! | TATTAGTAAAAGTTGTAAGT+TGG | - | Chr4:70565345-70565364 | None:intergenic | 20.0% |
| !!! | ATTTAGCTTGAGATTTTTTT+TGG | - | Chr4:70566341-70566360 | None:intergenic | 20.0% |
| !!! | CTTAACTTCAATATTTTCAA+AGG | + | Chr4:70565112-70565131 | MsG0480022278.01.T01:CDS | 20.0% |
| !!! | GTTATACTTTTTTTTGAAGA+AGG | - | Chr4:70566171-70566190 | None:intergenic | 20.0% |
| !!! | GTTTTTTAACATTTGTAATG+TGG | + | Chr4:70566413-70566432 | MsG0480022278.01.T01:intron | 20.0% |
| !!! | TAATTGTCGTTATTCTAAAA+AGG | + | Chr4:70564986-70565005 | MsG0480022278.01.T01:CDS | 20.0% |
| !!! | TACTATGTATTTAGGTTATA+GGG | - | Chr4:70566215-70566234 | None:intergenic | 20.0% |
| !!! | TTAAACAATTTTAACAGCTA+AGG | + | Chr4:70565370-70565389 | MsG0480022278.01.T01:intron | 20.0% |
| !!! | TTACTATGTATTTAGGTTAT+AGG | - | Chr4:70566216-70566235 | None:intergenic | 20.0% |
| !!! | TTTCTTTTCCAAAGTATATT+TGG | + | Chr4:70565010-70565029 | MsG0480022278.01.T01:CDS | 20.0% |
| ! | AAATTGAGCATAATAAGTGT+AGG | + | Chr4:70565272-70565291 | MsG0480022278.01.T01:intron | 25.0% |
| ! | AATTGAGCATAATAAGTGTA+GGG | + | Chr4:70565273-70565292 | MsG0480022278.01.T01:intron | 25.0% |
| ! | AGATTTATTGTAGTTTAGCT+AGG | - | Chr4:70565317-70565336 | None:intergenic | 25.0% |
| ! | AGCAGAAAAAGTTTAGTTAA+AGG | - | Chr4:70566284-70566303 | None:intergenic | 25.0% |
| ! | CTAATACTATGTAGCATTAT+CGG | - | Chr4:70565631-70565650 | None:intergenic | 25.0% |
| ! | TAAACGTTCTAGTATATGTA+GGG | + | Chr4:70565799-70565818 | MsG0480022278.01.T01:intron | 25.0% |
| ! | TCCAAAGTATATTTGGAAAA+AGG | + | Chr4:70565017-70565036 | MsG0480022278.01.T01:CDS | 25.0% |
| ! | TTAAACGTTCTAGTATATGT+AGG | + | Chr4:70565798-70565817 | MsG0480022278.01.T01:intron | 25.0% |
| ! | TTGTAATGTGGCATATATAA+AGG | + | Chr4:70566425-70566444 | MsG0480022278.01.T01:intron | 25.0% |
| !! | ACCTTTTTCCAAATATACTT+TGG | - | Chr4:70565021-70565040 | None:intergenic | 25.0% |
| !! | ACTATGTATTTAGGTTATAG+GGG | - | Chr4:70566214-70566233 | None:intergenic | 25.0% |
| !! | TACTTGAAGTATTATCTTAG+TGG | - | Chr4:70566133-70566152 | None:intergenic | 25.0% |
| !! | TTAAACAAATTTGAGACCTA+TGG | + | Chr4:70566238-70566257 | MsG0480022278.01.T01:intron | 25.0% |
| !!! | TTTAACTAAACTTTTTCTGC+TGG | + | Chr4:70566283-70566302 | MsG0480022278.01.T01:intron | 25.0% |
| !!! | TTTTTTTGTTAAGTAGCACA+TGG | - | Chr4:70565884-70565903 | None:intergenic | 25.0% |
| AAACGTTCTAGTATATGTAG+GGG | + | Chr4:70565800-70565819 | MsG0480022278.01.T01:intron | 30.0% | |
| AAATCTAAGTACTTGAAGAG+TGG | + | Chr4:70566786-70566805 | MsG0480022278.01.T01:CDS | 30.0% | |
| AATATCACATTCCTGAGAAT+TGG | + | Chr4:70566940-70566959 | MsG0480022278.01.T01:CDS | 30.0% | |
| AATCTAAGTACTTGAAGAGT+GGG | + | Chr4:70566787-70566806 | MsG0480022278.01.T01:CDS | 30.0% | |
| AATGTAGTAAGTACTTACGT+AGG | - | Chr4:70564902-70564921 | None:intergenic | 30.0% | |
| ACTTGCAACTATAAGTTCTA+TGG | + | Chr4:70566533-70566552 | MsG0480022278.01.T01:CDS | 30.0% | |
| AGTATGGAAACAAATTGGAT+GGG | + | Chr4:70565143-70565162 | MsG0480022278.01.T01:CDS | 30.0% | |
| CGTAAGTACTTACTACATTA+TGG | + | Chr4:70564903-70564922 | MsG0480022278.01.T01:CDS | 30.0% | |
| GAAGGTAATGTTGAAAAGTA+TGG | + | Chr4:70565188-70565207 | MsG0480022278.01.T01:intron | 30.0% | |
| TATGCAAGAAGAAGACTATT+TGG | - | Chr4:70566729-70566748 | None:intergenic | 30.0% | |
| TCTTCTTCTTGCATATTCAA+AGG | + | Chr4:70566734-70566753 | MsG0480022278.01.T01:CDS | 30.0% | |
| TGTGAGGAAGAAATAGATAT+GGG | + | Chr4:70564801-70564820 | MsG0480022278.01.T01:CDS | 30.0% | |
| ! | CAATATTTTCAAAGGATGCT+TGG | + | Chr4:70565120-70565139 | MsG0480022278.01.T01:CDS | 30.0% |
| ! | GATTTAGGACTGAATATAAG+TGG | - | Chr4:70565491-70565510 | None:intergenic | 30.0% |
| ! | TAAAGGAGGGTTTAATTTAG+AGG | + | Chr4:70566866-70566885 | MsG0480022278.01.T01:CDS | 30.0% |
| ! | TGATGGTTTCAACTTTGAAA+AGG | + | Chr4:70564947-70564966 | MsG0480022278.01.T01:CDS | 30.0% |
| AACATGGAGGTTTATTTGCA+TGG | + | Chr4:70566822-70566841 | MsG0480022278.01.T01:CDS | 35.0% | |
| AACGTTCTAGTATATGTAGG+GGG | + | Chr4:70565801-70565820 | MsG0480022278.01.T01:intron | 35.0% | |
| AACTTAGTGGCAAAAGTAAG+TGG | + | Chr4:70564847-70564866 | MsG0480022278.01.T01:CDS | 35.0% | |
| AAGTAAGTGGAAAGGTCTAT+TGG | + | Chr4:70564860-70564879 | MsG0480022278.01.T01:CDS | 35.0% | |
| AAGTTAGAATTTCCAACACG+AGG | - | Chr4:70566639-70566658 | None:intergenic | 35.0% | |
| ATCTAAGTACTTGAAGAGTG+GGG | + | Chr4:70566788-70566807 | MsG0480022278.01.T01:CDS | 35.0% | |
| CCAAATGCAAATAATGTGAC+AGG | - | Chr4:70566612-70566631 | None:intergenic | 35.0% | |
| CCTGTCACATTATTTGCATT+TGG | + | Chr4:70566609-70566628 | MsG0480022278.01.T01:CDS | 35.0% | |
| CGTGTTGGAAATTCTAACTT+TGG | + | Chr4:70566639-70566658 | MsG0480022278.01.T01:CDS | 35.0% | |
| CTTCTTGCATATTCAAAGGT+GGG | + | Chr4:70566738-70566757 | MsG0480022278.01.T01:CDS | 35.0% | |
| CTTGGAGTATGGAAACAAAT+TGG | + | Chr4:70565138-70565157 | MsG0480022278.01.T01:CDS | 35.0% | |
| GAAATTAGCATAACTGTCGT+TGG | + | Chr4:70566492-70566511 | MsG0480022278.01.T01:CDS | 35.0% | |
| GAGTATGGAAACAAATTGGA+TGG | + | Chr4:70565142-70565161 | MsG0480022278.01.T01:CDS | 35.0% | |
| GGATGTTGCATACAAATACT+TGG | - | Chr4:70565066-70565085 | None:intergenic | 35.0% | |
| GTATGGAAACAAATTGGATG+GGG | + | Chr4:70565144-70565163 | MsG0480022278.01.T01:CDS | 35.0% | |
| GTGTGAGGAAGAAATAGATA+TGG | + | Chr4:70564800-70564819 | MsG0480022278.01.T01:CDS | 35.0% | |
| GTTTATTTGCATGGAATTGC+AGG | + | Chr4:70566831-70566850 | MsG0480022278.01.T01:CDS | 35.0% | |
| TCTTCTTGCATATTCAAAGG+TGG | + | Chr4:70566737-70566756 | MsG0480022278.01.T01:CDS | 35.0% | |
| TGATTCTAGTGCTAGAAAAC+AGG | + | Chr4:70565577-70565596 | MsG0480022278.01.T01:CDS | 35.0% | |
| TGTAACTGCACATTCGATTT+AGG | - | Chr4:70565506-70565525 | None:intergenic | 35.0% | |
| TTACGTAGGTCAATGTGTAA+AGG | - | Chr4:70564888-70564907 | None:intergenic | 35.0% | |
| TTCAACAATCTGATGGTACT+TGG | + | Chr4:70566988-70567007 | MsG0480022278.01.T01:CDS | 35.0% | |
| TTCAACATTACCTTCATCAG+TGG | - | Chr4:70565183-70565202 | None:intergenic | 35.0% | |
| TTGGTCACAGAATACTTGTA+AGG | - | Chr4:70565047-70565066 | None:intergenic | 35.0% | |
| TTTGCTCAAGCTACATATGA+TGG | + | Chr4:70564930-70564949 | MsG0480022278.01.T01:CDS | 35.0% | |
| ! | CTATTTCTTCCTCACACAAA+TGG | - | Chr4:70564797-70564816 | None:intergenic | 35.0% |
| !! | TAAAAGTGTCCATTTGTGTG+AGG | + | Chr4:70564785-70564804 | MsG0480022278.01.T01:CDS | 35.0% |
| !! | TAACAGCTAAGGAAGCATTA+GGG | + | Chr4:70565381-70565400 | MsG0480022278.01.T01:intron | 35.0% |
| !! | TTAACAGCTAAGGAAGCATT+AGG | + | Chr4:70565380-70565399 | MsG0480022278.01.T01:intron | 35.0% |
| AAACGAGATTAGCAGACTTG+TGG | + | Chr4:70566452-70566471 | MsG0480022278.01.T01:CDS | 40.0% | |
| AGAACATGGAGAGAACTTAG+TGG | + | Chr4:70564834-70564853 | MsG0480022278.01.T01:CDS | 40.0% | |
| AGTGGCAAAAGTAAGTGGAA+AGG | + | Chr4:70564852-70564871 | MsG0480022278.01.T01:CDS | 40.0% | |
| AGTTAAAGGCCCAGTCATTA+AGG | - | Chr4:70566270-70566289 | None:intergenic | 40.0% | |
| ATCACATTCCTGAGAATTGG+AGG | + | Chr4:70566943-70566962 | MsG0480022278.01.T01:CDS | 40.0% | |
| ATGGCACTTACCTTAATGAC+TGG | + | Chr4:70566257-70566276 | MsG0480022278.01.T01:intron | 40.0% | |
| CTAGCACTAGAATCAGCTAT+TGG | - | Chr4:70565572-70565591 | None:intergenic | 40.0% | |
| GAACACAAGGAAGTAAAGGA+GGG | + | Chr4:70566853-70566872 | MsG0480022278.01.T01:CDS | 40.0% | |
| GGTATGGTTCAACAATCTGA+TGG | + | Chr4:70566981-70567000 | MsG0480022278.01.T01:CDS | 40.0% | |
| GTCATTAAGGTAAGTGCCAT+AGG | - | Chr4:70566257-70566276 | None:intergenic | 40.0% | |
| TCACATTCCTGAGAATTGGA+GGG | + | Chr4:70566944-70566963 | MsG0480022278.01.T01:CDS | 40.0% | |
| TCGAATGTGCAGTTACACAA+TGG | + | Chr4:70565509-70565528 | MsG0480022278.01.T01:CDS | 40.0% | |
| TCTAGTATATGTAGGGGGTA+GGG | + | Chr4:70565806-70565825 | MsG0480022278.01.T01:intron | 40.0% | |
| TGATGGTACTTGGAAGCTAA+TGG | + | Chr4:70566998-70567017 | MsG0480022278.01.T01:CDS | 40.0% | |
| TGGCACTTACCTTAATGACT+GGG | + | Chr4:70566258-70566277 | MsG0480022278.01.T01:intron | 40.0% | |
| TTCAAAGGATGCTTGGAGTA+TGG | + | Chr4:70565127-70565146 | MsG0480022278.01.T01:CDS | 40.0% | |
| TTCTAGTATATGTAGGGGGT+AGG | + | Chr4:70565805-70565824 | MsG0480022278.01.T01:intron | 40.0% | |
| ! | ACATAGTTGTTGCTTGGAGA+GGG | + | Chr4:70565411-70565430 | MsG0480022278.01.T01:CDS | 40.0% |
| !! | GAAAAGGCATCTAAGTATGC+AGG | + | Chr4:70564963-70564982 | MsG0480022278.01.T01:CDS | 40.0% |
| CATGGAATTGCAGGAACACA+AGG | + | Chr4:70566840-70566859 | MsG0480022278.01.T01:CDS | 45.0% | |
| CTAGTATATGTAGGGGGTAG+GGG | + | Chr4:70565807-70565826 | MsG0480022278.01.T01:intron | 45.0% | |
| GAGGAATTAGAAATCGACGC+TGG | + | Chr4:70566762-70566781 | MsG0480022278.01.T01:CDS | 45.0% | |
| GCAGGAACACAAGGAAGTAA+AGG | + | Chr4:70566849-70566868 | MsG0480022278.01.T01:CDS | 45.0% | |
| GGAACACAAGGAAGTAAAGG+AGG | + | Chr4:70566852-70566871 | MsG0480022278.01.T01:CDS | 45.0% | |
| GGACTGAATATAAGTGGTGC+AGG | - | Chr4:70565485-70565504 | None:intergenic | 45.0% | |
| GGTTAGTGCACATAACATGG+AGG | + | Chr4:70566809-70566828 | MsG0480022278.01.T01:CDS | 45.0% | |
| TGCATATTCAAAGGTGGGAG+AGG | + | Chr4:70566743-70566762 | MsG0480022278.01.T01:CDS | 45.0% | |
| TGGGTAGCATAGCAAGAACA+TGG | + | Chr4:70564820-70564839 | MsG0480022278.01.T01:CDS | 45.0% | |
| ! | GACATAGTTGTTGCTTGGAG+AGG | + | Chr4:70565410-70565429 | MsG0480022278.01.T01:CDS | 45.0% |
| ! | TGGGGTTAGTGCACATAACA+TGG | + | Chr4:70566806-70566825 | MsG0480022278.01.T01:CDS | 45.0% |
| !! | GTGACAGGACATGCTTTTTG+AGG | - | Chr4:70566597-70566616 | None:intergenic | 45.0% |
| !! | TAAGGAAGCATTAGGGAGGA+GGG | + | Chr4:70565388-70565407 | MsG0480022278.01.T01:CDS | 45.0% |
| !!! | GCTTTTTGAGGTTGCCCTTT+TGG | - | Chr4:70566585-70566604 | None:intergenic | 45.0% |
| AACTGTCGTTGGACACAGCT+TGG | + | Chr4:70566503-70566522 | MsG0480022278.01.T01:CDS | 50.0% | |
| ACTGTCGTTGGACACAGCTT+GGG | + | Chr4:70566504-70566523 | MsG0480022278.01.T01:CDS | 50.0% | |
| CATTCCTGAGAATTGGAGGG+TGG | + | Chr4:70566947-70566966 | MsG0480022278.01.T01:CDS | 50.0% | |
| CGCTGCACTATCTCTTGCTT+TGG | - | Chr4:70565087-70565106 | None:intergenic | 50.0% | |
| GACAATTCAGGGTGCAGAGT+GGG | + | Chr4:70565433-70565452 | MsG0480022278.01.T01:CDS | 50.0% | |
| GCTTGGAGAGGGACAATTCA+GGG | + | Chr4:70565422-70565441 | MsG0480022278.01.T01:CDS | 50.0% | |
| GGAGGGACATAGTTGTTGCT+TGG | + | Chr4:70565405-70565424 | MsG0480022278.01.T01:CDS | 50.0% | |
| TGCTTGGAGAGGGACAATTC+AGG | + | Chr4:70565421-70565440 | MsG0480022278.01.T01:CDS | 50.0% | |
| ! | GCATTTGGTTCACCTCGTGT+TGG | + | Chr4:70566624-70566643 | MsG0480022278.01.T01:CDS | 50.0% |
| ! | GTTGCTGTTGCCACTGATGA+AGG | + | Chr4:70565170-70565189 | MsG0480022278.01.T01:CDS | 50.0% |
| !! | CAGCTAAGGAAGCATTAGGG+AGG | + | Chr4:70565384-70565403 | MsG0480022278.01.T01:intron | 50.0% |
| !! | CTAAGGAAGCATTAGGGAGG+AGG | + | Chr4:70565387-70565406 | MsG0480022278.01.T01:CDS | 50.0% |
| !! | GGTGGTGGAGAATAAGGGTA+TGG | + | Chr4:70566965-70566984 | MsG0480022278.01.T01:CDS | 50.0% |
| !! | TGGAGGGTGGTGGAGAATAA+GGG | + | Chr4:70566960-70566979 | MsG0480022278.01.T01:CDS | 50.0% |
| !! | TTGGAGGGTGGTGGAGAATA+AGG | + | Chr4:70566959-70566978 | MsG0480022278.01.T01:CDS | 50.0% |
| GGACAATTCAGGGTGCAGAG+TGG | + | Chr4:70565432-70565451 | MsG0480022278.01.T01:CDS | 55.0% | |
| TCCACCACCCTCCAATTCTC+AGG | - | Chr4:70566954-70566973 | None:intergenic | 55.0% | |
| TCCTGAGAATTGGAGGGTGG+TGG | + | Chr4:70566950-70566969 | MsG0480022278.01.T01:CDS | 55.0% | |
| GTCGTTGGACACAGCTTGGG+TGG | + | Chr4:70566507-70566526 | MsG0480022278.01.T01:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr4 | gene | 70564777 | 70567064 | 70564777 | ID=MsG0480022278.01;Name=MsG0480022278.01 |
| Chr4 | mRNA | 70564777 | 70567064 | 70564777 | ID=MsG0480022278.01.T01;Parent=MsG0480022278.01;Name=MsG0480022278.01.T01;_AED=0.29;_eAED=0.29;_QI=0|0|0|1|1|1|3|0|414 |
| Chr4 | exon | 70564777 | 70565191 | 70564777 | ID=MsG0480022278.01.T01:exon:28287;Parent=MsG0480022278.01.T01 |
| Chr4 | exon | 70565387 | 70565598 | 70565387 | ID=MsG0480022278.01.T01:exon:28286;Parent=MsG0480022278.01.T01 |
| Chr4 | exon | 70566447 | 70567064 | 70566447 | ID=MsG0480022278.01.T01:exon:28285;Parent=MsG0480022278.01.T01 |
| Chr4 | CDS | 70564777 | 70565191 | 70564777 | ID=MsG0480022278.01.T01:cds;Parent=MsG0480022278.01.T01 |
| Chr4 | CDS | 70565387 | 70565598 | 70565387 | ID=MsG0480022278.01.T01:cds;Parent=MsG0480022278.01.T01 |
| Chr4 | CDS | 70566447 | 70567064 | 70566447 | ID=MsG0480022278.01.T01:cds;Parent=MsG0480022278.01.T01 |
| Gene Sequence |
| Protein sequence |
