AlfalfaGEDB | MsG0680034418.01

M. sativa cultivar ZhongmuNo.1 / MsG0680034418.01

KEGG: -
GO: GO:0016491
PFAM: PF01408

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0680034418.01.T01	XP_013452629.1	96.712	365	12	0	1	365	1	365	0	737

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0680034418.01.T01	Q9SZ83	54.545	363	160	2	1	362	1	359	1.21E-149	429

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0680034418.01.T01	A0A072UAI0	96.712	365	12	0	1	365	1	365	0.0	737

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080048134.01	MsG0680034418.01	0.835439	1.677224e-56	2.051027e-53
MsG0080049046.01	MsG0680034418.01	0.812868	3.413171e-51	2.194737e-48
MsG0180000495.01	MsG0680034418.01	0.819941	8.913296e-53	6.956232e-50
MsG0180000551.01	MsG0680034418.01	0.806461	8.135845e-50	4.418612e-47
MsG0180001008.01	MsG0680034418.01	0.840904	6.564599e-58	9.486992e-55
MsG0180001027.01	MsG0680034418.01	0.817457	3.265761e-52	2.379630e-49
MsG0180001499.01	MsG0680034418.01	0.815626	8.394498e-52	5.817963e-49
MsG0180001797.01	MsG0680034418.01	0.815734	7.940834e-52	5.519851e-49
MsG0180001915.01	MsG0680034418.01	0.815234	1.026189e-51	7.035236e-49
MsG0180002255.01	MsG0680034418.01	0.834043	3.764668e-56	4.415019e-53

Showing 1 to 10 of 231 entries

Previous1 2 3 4 5…24Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0680034418.01.T01	MTR_6g066230	96.712	365	12	0	1	365	1	365	0.0	737
MsG0680034418.01.T01	MTR_6g038640	51.934	362	171	2	1	362	1	359	8.72e-144	412
MsG0680034418.01.T01	MTR_6g038390	52.809	356	165	2	7	362	9	361	8.78e-141	404
MsG0680034418.01.T01	MTR_6g038650	51.381	362	168	2	1	362	1	354	1.10e-140	404
MsG0680034418.01.T01	MTR_1g097250	52.486	362	163	3	4	362	3	358	4.97e-136	392
MsG0680034418.01.T01	MTR_6g038350	53.652	356	162	2	7	362	9	361	6.21e-135	389
MsG0680034418.01.T01	MTR_6g038370	53.652	356	162	2	7	362	9	361	6.21e-135	389
MsG0680034418.01.T01	MTR_3g064900	48.907	366	180	4	1	362	1	363	3.66e-121	354
MsG0680034418.01.T01	MTR_6g038310	63.303	109	40	0	7	115	9	117	1.81e-38	134

Showing 1 to 9 of 9 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0680034418.01.T01	AT4G09670	54.545	363	160	2	1	362	1	359	1.24e-150	429
MsG0680034418.01.T01	AT1G34200	47.922	361	173	3	1	360	1	347	5.34e-122	356
MsG0680034418.01.T01	AT1G66130	39.510	367	214	6	1	362	1	364	9.83e-92	279

Showing 1 to 3 of 3 entries

Previous1Next

Find 80 sgRNAs with CRISPR-Local

Find 403 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCAAATTTAGATGGTCT+TGG	0.417356	6:+87296789	MsG0680034418.01.T01:CDS
AAACTTTGATGTAACAATTT+TGG	0.095575	6:+87297004	MsG0680034418.01.T01:CDS
AAATGAAACCTGAGAAGACA+TGG	0.592269	6:+87297246	MsG0680034418.01.T01:CDS
AACAAGGTAGATGGTGTCCT+AGG	0.479391	6:+87297132	MsG0680034418.01.T01:CDS
AACCCTAAACTCTCTTCAAA+AGG	0.467354	6:-87297065	None:intergenic
AAGGAGTTTGCTGATTTGGT+TGG	0.495544	6:+87297206	MsG0680034418.01.T01:CDS
AATAGCCCACGTCATGTGTA+AGG	0.481701	6:-87290836	None:intergenic
AATGCCACACTCATAGCCAT+TGG	0.576297	6:+87290679	MsG0680034418.01.T01:CDS
AATGGAGTGCAGTTTATGGA+TGG	0.581921	6:+87290952	MsG0680034418.01.T01:CDS
AATTGTGTTGGATGCTGTGA+AGG	0.579186	6:+87297292	MsG0680034418.01.T01:CDS

Showing 1 to 10 of 80 entries

Previous1 2 3 4 5…8Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AAACCAAATTTAGATGGTCT+TGG	+	Chr6:87296789-87296808	MsG0680034418.01.T01:CDS	30.0%
AATACTTTACCAGACATGAT+AGG	+	Chr6:87294074-87294093	MsG0680034418.01.T01:intron	30.0%
AATATGTAATGAGAAAAGGG+TGG	+	Chr6:87294235-87294254	MsG0680034418.01.T01:intron	30.0%
ACGTTTGACATAAAAATGTG+AGG	-	Chr6:87291666-87291685	None:intergenic	30.0%
AGAAGATATGATACGAAGTT+TGG	+	Chr6:87295142-87295161	MsG0680034418.01.T01:intron	30.0%
AGACAGCTACATATAATATG+TGG	+	Chr6:87292724-87292743	MsG0680034418.01.T01:intron	30.0%
AGGGAACTCAAAAATTGTAT+TGG	+	Chr6:87293279-87293298	MsG0680034418.01.T01:intron	30.0%
AGTAGAGAATAATTTGAAGG+TGG	-	Chr6:87291925-87291944	None:intergenic	30.0%
AGTGTCTTAGAATGTTAACA+CGG	+	Chr6:87295908-87295927	MsG0680034418.01.T01:intron	30.0%
ATGTGGTTCTTCATTACATT+GGG	+	Chr6:87296935-87296954	MsG0680034418.01.T01:CDS	30.0%

Showing 1 to 10 of 403 entries

Previous1 2 3 4 5…41Next

Chromosome	Type	Strat	End	Strand	Name
Chr6	gene	87290592	87297361	87290592	ID=MsG0680034418.01;Name=MsG0680034418.01
Chr6	mRNA	87290592	87297361	87290592	ID=MsG0680034418.01.T01;Parent=MsG0680034418.01;Name=MsG0680034418.01.T01;_AED=0.49;_eAED=0.50;_QI=0\|0\|0\|1\|1\|1\|2\|0\|365
Chr6	exon	87290592	87291056	87290592	ID=MsG0680034418.01.T01:exon:18256;Parent=MsG0680034418.01.T01
Chr6	exon	87296729	87297361	87296729	ID=MsG0680034418.01.T01:exon:18257;Parent=MsG0680034418.01.T01
Chr6	CDS	87290592	87291056	87290592	ID=MsG0680034418.01.T01:cds;Parent=MsG0680034418.01.T01
Chr6	CDS	87296729	87297361	87296729	ID=MsG0680034418.01.T01:cds;Parent=MsG0680034418.01.T01

Gene Sequence

>MsG0680034418.01.T01

ATGGCTGATGAAACGGTTGTGCGGTTTGGTATTCTTGGATGTGCTCAAATCTCTATCAAGTTATGCAAAGCCATAAGCAAAGCACCAAATGCCACACTCATAGCCATTGGAAGCCGTTCTCTAGAGAAAGCAACTGCTTTTGCGGCGGAGCAGGGGTTGCCAGAGGTGGTTAGGGTTTACGGGAGCTATGAGGCTGTTTTGGAAGATAATGAGGTAGATGCAGTCTACATCCCTCTTCCGACGGCCTTACACATGACGTGGGCTATTAAGGCCGCCGAGAGGGGGAAGCATGTGTTGTTGGAGAAGCCGGTCGCGATGAATGTGTCGGAGCTTGATCGGATTCTTGAAGCTTGTGAGGCTAATGGAGTGCAGTTTATGGATGGTTCAATGTGGTTGCATCACCCTAGAACTGCTAAAATGAAGGAGGCTTTGCGTGATGAGCAACGTTTTGGTCAACTCAAATGGATACATAGTTGCATGACATACAATCCTGGTCCTGAGTTCCTCAAAAACAGCATTCGCATGAAACCAAATTTAGATGGTCTTGGTGCTCTTGGTGACATAGGTTGGTACAGCATCCAAGCAATTTTATGGTCTGTAAACTATGAGCTTCCAAAATCAGTTCTTGCATTCCCAAAAGCCACATTTAATGAAGACAATGTAATCATATCATGTGGTTCTTCATTACATTGGGAAGATGGAAAATCTGCCACATTCCATTGCTCTTTCTTAACCTATGTAAACTTTGATGTAACAATTTTGGGAACAAAAGGGTCGCTTCGTCTTCACGATTTAACACTTCCTTTTGAAGAGAGTTTAGGGTTTGGAACATTTTCGGAGGCGTCGGAGATTGATTATGCAAAGATTGAACAAGGTAGATGGTGTCCTAGGGCAAATGAACATGTTGTTGAGACAGAATTTTCTCAAGATGTTTGGATGATTAAGGAGTTTGCTGATTTGGTTGGTAAAATTATGAGGTTGGAAATGAAACCTGAGAAGACATGGTCAGTTGTTAGTAGAAAGACTCAAATTGTGTTGGATGCTGTGAAGGAGTCTATTCAAAGAGGTTATGAATCTGTTGAAATTGTGATGAATTAG

Protein sequence

>MsG0680034418.01.T01

MADETVVRFGILGCAQISIKLCKAISKAPNATLIAIGSRSLEKATAFAAEQGLPEVVRVYGSYEAVLEDNEVDAVYIPLPTALHMTWAIKAAERGKHVLLEKPVAMNVSELDRILEACEANGVQFMDGSMWLHHPRTAKMKEALRDEQRFGQLKWIHSCMTYNPGPEFLKNSIRMKPNLDGLGALGDIGWYSIQAILWSVNYELPKSVLAFPKATFNEDNVIISCGSSLHWEDGKSATFHCSFLTYVNFDVTILGTKGSLRLHDLTLPFEESLGFGTFSEASEIDYAKIEQGRWCPRANEHVVETEFSQDVWMIKEFADLVGKIMRLEMKPEKTWSVVSRKTQIVLDAVKESIQRGYESVEIVMN*