AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0280009232.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280009232.01.T01 MTR_2g055940 83.242 364 25 2 1 329 1 363 0.0 602
MsG0280009232.01.T01 MTR_7g011900 65.289 363 88 6 3 329 10 370 4.29e-165 464
MsG0280009232.01.T01 MTR_7g011990 59.780 363 105 5 3 329 10 367 3.92e-151 429
MsG0280009232.01.T01 MTR_7g012020 60.331 363 106 5 3 329 9 369 4.24e-151 429
MsG0280009232.01.T01 MTR_7g012040 60.606 363 104 7 3 329 9 368 4.73e-148 421
MsG0280009232.01.T01 MTR_7g012090 56.522 368 117 7 3 329 10 375 7.85e-137 393
MsG0280009232.01.T01 MTR_7g012070 56.250 368 118 7 3 329 10 375 1.14e-136 393
MsG0280009232.01.T01 MTR_1g096310 55.191 366 122 7 3 329 10 372 1.06e-133 385
MsG0280009232.01.T01 MTR_1g036460 47.011 368 149 8 3 329 8 370 1.33e-108 321
MsG0280009232.01.T01 MTR_1g036490 46.467 368 151 8 3 329 8 370 3.49e-106 315
MsG0280009232.01.T01 MTR_1g036510 46.724 351 143 6 20 329 37 384 6.25e-100 300
MsG0280009232.01.T01 MTR_7g012020 60.000 265 68 5 3 231 9 271 4.87e-99 294
MsG0280009232.01.T01 MTR_3g021440 47.159 352 146 8 15 329 22 370 7.90e-96 288
MsG0280009232.01.T01 MTR_3g021430 45.658 357 154 8 10 329 4 357 8.75e-95 285
MsG0280009232.01.T01 MTR_1g050220 48.148 297 135 6 20 312 6 287 1.05e-88 268
MsG0280009232.01.T01 MTR_7g012020 59.350 246 62 5 3 212 9 252 2.00e-87 263
MsG0280009232.01.T01 MTR_3g092900 39.227 362 178 8 4 329 8 363 1.14e-83 257
MsG0280009232.01.T01 MTR_5g098170 37.815 357 182 7 10 329 10 363 4.59e-75 235
MsG0280009232.01.T01 MTR_0591s0010 37.391 345 177 7 22 329 35 377 1.33e-70 224
MsG0280009232.01.T01 MTR_7g118320 35.942 345 182 6 22 329 20 362 4.07e-66 212
MsG0280009232.01.T01 MTR_8g068690 35.965 342 180 7 25 329 37 376 5.67e-65 209
MsG0280009232.01.T01 MTR_8g068730 38.730 315 182 7 22 329 35 345 1.07e-64 208
MsG0280009232.01.T01 MTR_7g118300 35.537 363 191 10 4 329 19 375 5.20e-64 207
MsG0280009232.01.T01 MTR_8g068750 35.072 345 185 7 22 329 35 377 8.15e-64 207
MsG0280009232.01.T01 MTR_6g060290 67.516 157 34 3 3 158 10 150 2.37e-63 199
MsG0280009232.01.T01 MTR_8g068570 40.210 286 158 7 22 296 35 318 2.39e-63 204
MsG0280009232.01.T01 MTR_1g036510 45.635 252 94 5 20 231 37 285 9.00e-60 194
MsG0280009232.01.T01 MTR_8g068870 33.429 347 192 8 20 329 19 363 1.07e-57 190
MsG0280009232.01.T01 MTR_8g024160 32.948 346 148 8 22 329 29 328 1.47e-52 176
MsG0280009232.01.T01 MTR_6g078850 33.051 354 195 8 15 327 32 384 2.12e-50 175
MsG0280009232.01.T01 MTR_1g036510 42.857 231 89 5 20 210 37 264 1.95e-47 161
MsG0280009232.01.T01 MTR_8g068740 39.565 230 130 5 22 245 35 261 5.75e-46 157
MsG0280009232.01.T01 MTR_3g096050 33.871 372 189 16 1 329 1 358 7.97e-45 157
MsG0280009232.01.T01 MTR_2g072790 31.609 348 184 12 10 314 4 340 2.85e-43 152
MsG0280009232.01.T01 MTR_3g096070 32.530 332 195 10 1 314 1 321 4.20e-43 152
MsG0280009232.01.T01 MTR_0079s0070 31.230 317 171 12 35 312 10 318 1.10e-38 140
MsG0280009232.01.T01 MTR_0017s0100 31.940 335 176 15 35 328 44 367 1.87e-38 140
MsG0280009232.01.T01 MTR_4g038440 31.230 317 171 12 35 312 44 352 2.66e-38 140
MsG0280009232.01.T01 MTR_3g083620 44.966 149 79 2 164 309 194 342 3.37e-38 139
MsG0280009232.01.T01 MTR_8g068690 33.195 241 124 5 29 233 41 280 6.62e-37 134
MsG0280009232.01.T01 MTR_4g088340 38.690 168 99 2 164 328 166 332 5.97e-34 127
MsG0280009232.01.T01 MTR_4g088345 27.515 338 192 10 32 328 30 355 7.17e-34 127
MsG0280009232.01.T01 MTR_7g024520 37.126 167 101 2 164 327 183 348 8.91e-33 124
MsG0280009232.01.T01 MTR_7g024500 37.908 153 92 1 164 313 183 335 3.29e-31 120
MsG0280009232.01.T01 MTR_1g076940 37.662 154 91 3 164 313 194 346 6.43e-31 120
MsG0280009232.01.T01 MTR_5g074680 34.359 195 115 5 143 328 169 359 1.92e-30 119
MsG0280009232.01.T01 MTR_5g074610 32.967 182 115 3 153 328 145 325 2.46e-30 117
MsG0280009232.01.T01 MTR_8g068600 32.456 228 117 5 40 231 27 253 3.65e-30 116
MsG0280009232.01.T01 MTR_5g074600 33.846 195 116 5 143 328 168 358 3.83e-30 117
MsG0280009232.01.T01 MTR_7g014510 34.884 172 103 4 162 328 189 356 2.55e-29 115
MsG0280009232.01.T01 MTR_7g014570 34.524 168 105 3 164 328 186 351 3.60e-29 115
MsG0280009232.01.T01 MTR_5g074580 31.122 196 117 5 147 328 168 359 7.31e-29 114
MsG0280009232.01.T01 MTR_4g079160 36.774 155 91 3 164 313 188 340 3.99e-28 112
MsG0280009232.01.T01 MTR_4g088200 30.986 213 139 3 109 313 134 346 7.49e-27 108
MsG0280009232.01.T01 MTR_3g096050 34.646 254 121 11 16 231 13 259 1.19e-26 106
MsG0280009232.01.T01 MTR_5g074540 32.961 179 103 4 149 313 151 326 2.10e-26 107
MsG0280009232.01.T01 MTR_4g033015 35.938 192 113 4 141 324 172 361 2.28e-26 107
MsG0280009232.01.T01 MTR_4g033200 35.417 192 114 4 141 324 172 361 1.91e-25 105
MsG0280009232.01.T01 MTR_4g088190 32.243 214 137 3 108 313 136 349 6.70e-25 103
MsG0280009232.01.T01 MTR_4g033150 34.375 192 116 4 141 324 172 361 1.17e-24 102
MsG0280009232.01.T01 MTR_8g068620 48.889 90 45 1 143 231 21 110 3.28e-24 95.5
MsG0280009232.01.T01 MTR_6g060280 76.786 56 7 2 184 234 2 56 5.33e-21 85.9
MsG0280009232.01.T01 MTR_4g033170 44.444 90 50 0 164 253 190 279 1.05e-19 89.0
MsG0280009232.01.T01 MTR_4g038440 29.487 234 121 9 35 231 44 270 1.92e-19 87.0
MsG0280009232.01.T01 MTR_4g033085 43.820 89 50 0 164 252 190 278 3.07e-18 84.7
MsG0280009232.01.T01 MTR_8g068760 38.000 100 60 2 231 329 135 233 2.16e-16 77.4
MsG0280009232.01.T01 MTR_8g068580 42.391 92 51 2 239 329 43 133 8.48e-15 70.9
MsG0280009232.01.T01 MTR_1g076930 40.580 69 40 1 164 231 169 237 1.61e-12 66.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280009232.01.T01 AT5G54160 40.510 353 171 7 12 329 13 361 4.80e-84 258
MsG0280009232.01.T01 AT1G77520 35.977 353 183 8 19 329 30 381 3.90e-67 215
MsG0280009232.01.T01 AT1G51990 36.607 336 172 8 13 309 10 343 1.43e-66 213
MsG0280009232.01.T01 AT1G51990 36.310 336 173 8 13 309 10 343 2.37e-66 213
MsG0280009232.01.T01 AT1G33030 36.443 343 172 8 22 323 10 347 1.99e-65 210
MsG0280009232.01.T01 AT1G77530 37.960 353 176 7 19 329 30 381 3.89e-61 200
MsG0280009232.01.T01 AT1G63140 35.411 353 185 9 19 329 30 381 2.67e-60 197
MsG0280009232.01.T01 AT1G63140 35.411 353 185 9 19 329 50 401 2.99e-60 198
MsG0280009232.01.T01 AT1G21100 35.260 346 180 9 15 319 22 364 5.96e-59 194
MsG0280009232.01.T01 AT1G21130 35.260 346 180 10 15 319 22 364 5.68e-58 191
MsG0280009232.01.T01 AT1G21110 34.682 346 182 9 15 319 22 364 4.18e-56 187
MsG0280009232.01.T01 AT1G76790 35.215 372 186 13 6 329 1 365 1.33e-55 185
MsG0280009232.01.T01 AT1G21120 34.682 346 182 10 15 319 22 364 2.40e-55 184
MsG0280009232.01.T01 AT1G21120 34.682 346 182 10 15 319 70 412 8.88e-55 184
MsG0280009232.01.T01 AT5G53810 35.777 341 175 9 32 329 39 378 3.01e-54 182
MsG0280009232.01.T01 AT1G62900 45.198 177 93 4 156 329 30 205 3.32e-48 161
MsG0280009232.01.T01 AT5G37170 33.224 304 183 10 41 329 36 334 4.56e-46 159
MsG0280009232.01.T01 AT5G37170 41.243 177 99 5 157 329 11 186 2.65e-43 147
MsG0280009232.01.T01 AT5G37170 38.743 191 112 5 143 329 45 234 1.13e-42 147
MsG0280009232.01.T01 AT3G53140 32.164 342 173 11 20 313 14 344 1.14e-42 151
MsG0280009232.01.T01 AT1G33030 35.341 249 122 5 22 234 10 255 1.26e-38 138
MsG0280009232.01.T01 AT1G33030 35.366 246 120 5 22 231 10 252 7.07e-38 136
MsG0280009232.01.T01 AT4G35150 40.252 159 86 4 164 313 151 309 1.58e-35 131
MsG0280009232.01.T01 AT4G35160 42.500 160 81 3 164 313 208 366 1.47e-32 125
MsG0280009232.01.T01 AT1G21130 32.812 256 130 8 15 231 22 274 1.05e-28 112
MsG0280009232.01.T01 AT1G63140 32.806 253 130 6 19 231 50 302 2.82e-28 111
MsG0280009232.01.T01 AT1G77530 34.188 234 114 4 19 212 30 263 3.08e-22 94.7

Find 75 sgRNAs with CRISPR-Local

Find 97 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCCTTTATTGATGGGTATT+TGG 0.140968 2:-48411443 None:intergenic
GGTACTACTTTGAGAGTTTA+TGG 0.145146 2:+48410973 MsG0280009232.01.T01:CDS
GACGCATCTCGATTCATTTA+TGG 0.185909 2:+48412136 MsG0280009232.01.T01:CDS
TGAAAATGATGGTGGTTATT+TGG 0.190360 2:+48411029 MsG0280009232.01.T01:CDS
GACCTATTCAAGAAAGTTAA+TGG 0.210657 2:+48411239 MsG0280009232.01.T01:CDS
AAAACACGATCGAGTCTATT+TGG 0.272250 2:-48410892 None:intergenic
TCTGAAAGAATATGAAAGTT+TGG 0.274095 2:+48412204 MsG0280009232.01.T01:CDS
TGCCAAATACCCATCAATAA+AGG 0.282531 2:+48411441 MsG0280009232.01.T01:CDS
CGAGATGCGTCTGTTGGTTC+TGG 0.300236 2:-48412124 None:intergenic
GTTTATGGGGTCACTTCTTC+TGG 0.301463 2:+48410988 MsG0280009232.01.T01:CDS
TTCCATTAACTTTCTTGAAT+AGG 0.343440 2:-48411241 None:intergenic
CACACTAACCTTAAGTAGTA+TGG 0.344612 2:-48411680 None:intergenic
GAAAATGATGGTGGTTATTT+GGG 0.349287 2:+48411030 MsG0280009232.01.T01:CDS
AAAGCCTTGTGACAAGTAAA+TGG 0.354130 2:-48411063 None:intergenic
ACTTGTCACAAGGCTTTGTT+TGG 0.367785 2:+48411069 MsG0280009232.01.T01:CDS
TTTAGAGTGTATGCCATAAC+TGG 0.370585 2:+48412005 MsG0280009232.01.T01:intron
CATTTAGGGATCCAACATAT+TGG 0.374317 2:+48411622 MsG0280009232.01.T01:intron
ACACTCTCTGCTATGGTGTT+AGG 0.375320 2:+48410733 MsG0280009232.01.T01:CDS
GTACTACTTTGAGAGTTTAT+GGG 0.376400 2:+48410974 MsG0280009232.01.T01:CDS
GGTAAGTCGGAGTGTTGATT+TGG 0.380815 2:-48410871 None:intergenic
AAATTGATTCCCTTTATTGA+TGG 0.391826 2:-48411451 None:intergenic
GCCAAATACCCATCAATAAA+GGG 0.393194 2:+48411442 MsG0280009232.01.T01:CDS
CTGAAAGAATATGAAAGTTT+GGG 0.400333 2:+48412205 MsG0280009232.01.T01:CDS
TCTGTTGGTTCTGGAACATC+TGG 0.401209 2:-48412115 None:intergenic
TATGGTGTTAGGTTCTGTTA+TGG 0.402609 2:+48410744 MsG0280009232.01.T01:CDS
ATCACCGTCGTTGGTGCGAT+TGG 0.407717 2:-48410950 None:intergenic
ATGATAATGACCTTTCCATT+TGG 0.411682 2:-48412079 None:intergenic
GAAAGTTTGGGTAAACGATC+TGG 0.423215 2:+48412217 MsG0280009232.01.T01:CDS
CACAAAGCTTTACCACCAAA+TGG 0.425024 2:+48412064 MsG0280009232.01.T01:CDS
AGGAGATGCCATACTACTTA+AGG 0.440627 2:+48411672 MsG0280009232.01.T01:CDS
AATTGATTCCCTTTATTGAT+GGG 0.443973 2:-48411450 None:intergenic
ATCATTGCTAGCAGCAATGA+TGG 0.448242 2:+48410814 MsG0280009232.01.T01:CDS
ATTGTTCATCCGACCAGTTA+TGG 0.467416 2:-48412018 None:intergenic
GGAACTCACACCTCACAAAC+AGG 0.473367 2:+48410697 MsG0280009232.01.T01:CDS
ATAATGACCTTTCCATTTGG+TGG 0.479304 2:-48412076 None:intergenic
ATCTCGATTCATTTATGGTA+TGG 0.481444 2:+48412141 MsG0280009232.01.T01:CDS
TCTTGAGGGAGTATCAACTA+TGG 0.481625 2:+48411375 MsG0280009232.01.T01:CDS
ATCATGTTTCTCACCGTTGG+TGG 0.492436 2:+48412169 MsG0280009232.01.T01:CDS
GTATTGTAGGTCTAATTTCA+AGG 0.496292 2:+48411194 MsG0280009232.01.T01:intron
GACGAATACAAAGGTCTTGA+GGG 0.496469 2:+48411361 MsG0280009232.01.T01:intron
TTTCTCCATTCTCGAAGTGA+TGG 0.501603 2:+48412270 MsG0280009232.01.T01:CDS
GAGTTCCATCACTTCGAGAA+TGG 0.502823 2:-48412275 None:intergenic
TGTTTCTCACCGTTGGTGGA+AGG 0.518754 2:+48412173 MsG0280009232.01.T01:CDS
AACATCATGTTTCTCACCGT+TGG 0.521035 2:+48412166 MsG0280009232.01.T01:CDS
GTTTCTCACCGTTGGTGGAA+GGG 0.521156 2:+48412174 MsG0280009232.01.T01:CDS
GTATCAACTATGGTTGATGT+AGG 0.524001 2:+48411385 MsG0280009232.01.T01:CDS
CACGCCATTTACTTGTCACA+AGG 0.531458 2:+48411059 MsG0280009232.01.T01:CDS
ACATGCTTCCTCCAATATGT+TGG 0.534854 2:-48411633 None:intergenic
AGTTCTTTCCCTTCCACCAA+CGG 0.550698 2:-48412182 None:intergenic
ATTGCAGCATTAAGAACTGC+AGG 0.551711 2:-48410772 None:intergenic
TTTGTTGATGATGAAAATGA+TGG 0.552091 2:+48411018 MsG0280009232.01.T01:CDS
ATCGAGTCTATTTGGTAAGT+CGG 0.554297 2:-48410884 None:intergenic
TTAGGGATCCAACATATTGG+AGG 0.566339 2:+48411625 MsG0280009232.01.T01:intron
TGACGAATACAAAGGTCTTG+AGG 0.572199 2:+48411360 MsG0280009232.01.T01:intron
ACTACTGTCACCTGTTTGTG+AGG 0.573457 2:-48410707 None:intergenic
GAAAATGAACAATAATGTTG+TGG 0.578225 2:+48410675 None:intergenic
AAAATGAACAATAATGTTGT+GGG 0.579380 2:+48410676 None:intergenic
TAGTGATACACTCTCTGCTA+TGG 0.581019 2:+48410726 MsG0280009232.01.T01:CDS
AATCGCACCAACGACGGTGA+TGG 0.582941 2:+48410952 MsG0280009232.01.T01:CDS
TACTACTTTGAGAGTTTATG+GGG 0.583128 2:+48410975 MsG0280009232.01.T01:CDS
GTTGATGTAGGAGGTGGCAG+TGG 0.588462 2:+48411397 MsG0280009232.01.T01:CDS
GAAAATGCACCACCTACTCC+AGG 0.597174 2:+48411493 MsG0280009232.01.T01:CDS
GTTGATGATGAAAATGATGG+TGG 0.599361 2:+48411021 MsG0280009232.01.T01:CDS
GTTTCCAATCGCACCAACGA+CGG 0.599694 2:+48410946 MsG0280009232.01.T01:CDS
ATGAATCGAGATGCGTCTGT+TGG 0.600546 2:-48412130 None:intergenic
AGTAGTATGGCATCTCCTTG+TGG 0.601193 2:-48411667 None:intergenic
TCAACTATGGTTGATGTAGG+AGG 0.605473 2:+48411388 MsG0280009232.01.T01:CDS
ACTATGGTTGATGTAGGAGG+TGG 0.606248 2:+48411391 MsG0280009232.01.T01:CDS
AATAGGTTACCTGGAGTAGG+TGG 0.622764 2:-48411502 None:intergenic
AGCTTTACCACCAAATGGAA+AGG 0.624460 2:+48412069 MsG0280009232.01.T01:CDS
ACAAGGCTTTGTTTGGAATG+TGG 0.625990 2:+48411076 MsG0280009232.01.T01:CDS
AGAAATAGGTTACCTGGAGT+AGG 0.627597 2:-48411505 None:intergenic
AGTAGTACCATCACCGTCGT+TGG 0.629299 2:-48410959 None:intergenic
GAGTGTATGCCATAACTGGT+CGG 0.668148 2:+48412009 MsG0280009232.01.T01:intron
ATGTTTGAAAGTGTTCCACA+AGG 0.704402 2:+48411652 MsG0280009232.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAAAATTAATTTGTATTGT+AGG + Chr2:48411181-48411200 MsG0280009232.01.T01:intron 10.0%
!! AAAATTACCAAATTTCATTT+AGG + Chr2:48411607-48411626 MsG0280009232.01.T01:intron 15.0%
!! AAATTACCAAATTTCATTTA+GGG + Chr2:48411608-48411627 MsG0280009232.01.T01:intron 15.0%
!! TATAGATAATAAATGATGTT+AGG - Chr2:48411941-48411960 None:intergenic 15.0%
!!! TATATATCAACATTTTTGCA+TGG - Chr2:48411159-48411178 None:intergenic 20.0%
! AATGTAATCACAAGAGAAAT+AGG - Chr2:48411522-48411541 None:intergenic 25.0%
! AGATAATAAATGATGTTAGG+AGG - Chr2:48411938-48411957 None:intergenic 25.0%
! ATATCTATGTATGAGTACTT+TGG + Chr2:48411263-48411282 MsG0280009232.01.T01:intron 25.0%
! CTGAAAGAATATGAAAGTTT+GGG + Chr2:48412205-48412224 MsG0280009232.01.T01:CDS 25.0%
! TCTGAAAGAATATGAAAGTT+TGG + Chr2:48412204-48412223 MsG0280009232.01.T01:CDS 25.0%
! TTCAATATACTCTCTTTGAT+TGG - Chr2:48411885-48411904 None:intergenic 25.0%
! TTCCATTAACTTTCTTGAAT+AGG - Chr2:48411244-48411263 None:intergenic 25.0%
!! AAATTGATTCCCTTTATTGA+TGG - Chr2:48411454-48411473 None:intergenic 25.0%
!! AATTGATTCCCTTTATTGAT+GGG - Chr2:48411453-48411472 None:intergenic 25.0%
!! TGATTGGTTAAAATTCACAT+GGG - Chr2:48411822-48411803 None:intergenic 25.0%
!! TTGATTGGTTAAAATTCACA+TGG - Chr2:48411821-48411802 None:intergenic 25.0%
!!! TTTGTTGATGATGAAAATGA+TGG + Chr2:48411018-48411037 MsG0280009232.01.T01:CDS 25.0%
AAGTTCATGAGAAATGTTAG+TGG + Chr2:48411755-48411774 MsG0280009232.01.T01:intron 30.0%
ATAAATGATGTTAGGAGGAA+TGG - Chr2:48411933-48411952 None:intergenic 30.0%
ATCTCGATTCATTTATGGTA+TGG + Chr2:48412141-48412160 MsG0280009232.01.T01:CDS 30.0%
GACCTATTCAAGAAAGTTAA+TGG + Chr2:48411239-48411258 MsG0280009232.01.T01:CDS 30.0%
GAGACCTATCAAATTTATGT+GGG + Chr2:48411823-48411842 MsG0280009232.01.T01:intron 30.0%
GTATTGTAGGTCTAATTTCA+AGG + Chr2:48411194-48411213 MsG0280009232.01.T01:intron 30.0%
TGAGACCTATCAAATTTATG+TGG + Chr2:48411822-48411841 MsG0280009232.01.T01:intron 30.0%
TTGGATCCCTAAATGAAATT+TGG - Chr2:48411617-48411636 None:intergenic 30.0%
! ATGATAATGACCTTTCCATT+TGG - Chr2:48412082-48412101 None:intergenic 30.0%
! GTACTACTTTGAGAGTTTAT+GGG + Chr2:48410974-48410993 MsG0280009232.01.T01:CDS 30.0%
! TACTACTTTGAGAGTTTATG+GGG + Chr2:48410975-48410994 MsG0280009232.01.T01:CDS 30.0%
!! GAAAATGATGGTGGTTATTT+GGG + Chr2:48411030-48411049 MsG0280009232.01.T01:CDS 30.0%
!! TGAAAATGATGGTGGTTATT+TGG + Chr2:48411029-48411048 MsG0280009232.01.T01:CDS 30.0%
AAAACACGATCGAGTCTATT+TGG - Chr2:48410895-48410914 None:intergenic 35.0%
AAGAATCGTGACGAATACAA+AGG + Chr2:48411352-48411371 MsG0280009232.01.T01:intron 35.0%
ATAATGACCTTTCCATTTGG+TGG - Chr2:48412079-48412098 None:intergenic 35.0%
ATCGAGTCTATTTGGTAAGT+CGG - Chr2:48410887-48410906 None:intergenic 35.0%
CACACTAACCTTAAGTAGTA+TGG - Chr2:48411683-48411702 None:intergenic 35.0%
CATTTAGGGATCCAACATAT+TGG + Chr2:48411622-48411641 MsG0280009232.01.T01:intron 35.0%
GAGTCCCACATAAATTTGAT+AGG - Chr2:48411830-48411849 None:intergenic 35.0%
GCCAAATACCCATCAATAAA+GGG + Chr2:48411442-48411461 MsG0280009232.01.T01:CDS 35.0%
TAACACACACTCTCTTTGAT+TGG + Chr2:48411787-48411806 MsG0280009232.01.T01:intron 35.0%
TGCCAAATACCCATCAATAA+AGG + Chr2:48411441-48411460 MsG0280009232.01.T01:CDS 35.0%
! AAAGCCTTGTGACAAGTAAA+TGG - Chr2:48411066-48411085 None:intergenic 35.0%
! GGTACTACTTTGAGAGTTTA+TGG + Chr2:48410973-48410992 MsG0280009232.01.T01:CDS 35.0%
! GTATCAACTATGGTTGATGT+AGG + Chr2:48411385-48411404 MsG0280009232.01.T01:CDS 35.0%
! TATGGTGTTAGGTTCTGTTA+TGG + Chr2:48410744-48410763 MsG0280009232.01.T01:CDS 35.0%
! TCCCTTTATTGATGGGTATT+TGG - Chr2:48411446-48411465 None:intergenic 35.0%
! TTTAGAGTGTATGCCATAAC+TGG + Chr2:48412005-48412024 MsG0280009232.01.T01:intron 35.0%
!! ATGTTTGAAAGTGTTCCACA+AGG + Chr2:48411652-48411671 MsG0280009232.01.T01:CDS 35.0%
!! GTTGATGATGAAAATGATGG+TGG + Chr2:48411021-48411040 MsG0280009232.01.T01:CDS 35.0%
AACATCATGTTTCTCACCGT+TGG + Chr2:48412166-48412185 MsG0280009232.01.T01:CDS 40.0%
ACATGCTTCCTCCAATATGT+TGG - Chr2:48411636-48411655 None:intergenic 40.0%
AGAAATAGGTTACCTGGAGT+AGG - Chr2:48411508-48411527 None:intergenic 40.0%
AGCTTTACCACCAAATGGAA+AGG + Chr2:48412069-48412088 MsG0280009232.01.T01:CDS 40.0%
AGGAGATGCCATACTACTTA+AGG + Chr2:48411672-48411691 MsG0280009232.01.T01:CDS 40.0%
ATCATTGCTAGCAGCAATGA+TGG + Chr2:48410814-48410833 MsG0280009232.01.T01:CDS 40.0%
ATTGCAGCATTAAGAACTGC+AGG - Chr2:48410775-48410794 None:intergenic 40.0%
ATTGTTCATCCGACCAGTTA+TGG - Chr2:48412021-48412040 None:intergenic 40.0%
CACAAAGCTTTACCACCAAA+TGG + Chr2:48412064-48412083 MsG0280009232.01.T01:CDS 40.0%
CACAAGAGAAATAGGTTACC+TGG - Chr2:48411514-48411533 None:intergenic 40.0%
GAAAGTTTGGGTAAACGATC+TGG + Chr2:48412217-48412236 MsG0280009232.01.T01:CDS 40.0%
GACGAATACAAAGGTCTTGA+GGG + Chr2:48411361-48411380 MsG0280009232.01.T01:intron 40.0%
GACGCATCTCGATTCATTTA+TGG + Chr2:48412136-48412155 MsG0280009232.01.T01:CDS 40.0%
TAGTGATACACTCTCTGCTA+TGG + Chr2:48410726-48410745 MsG0280009232.01.T01:CDS 40.0%
TATGTGGGACTCACATGATT+TGG + Chr2:48411838-48411857 MsG0280009232.01.T01:intron 40.0%
TGACGAATACAAAGGTCTTG+AGG + Chr2:48411360-48411379 MsG0280009232.01.T01:intron 40.0%
TTAGGGATCCAACATATTGG+AGG + Chr2:48411625-48411644 MsG0280009232.01.T01:intron 40.0%
TTTCTCCATTCTCGAAGTGA+TGG + Chr2:48412270-48412289 MsG0280009232.01.T01:CDS 40.0%
! GGTGCATTTTCAATGACTTG+AGG - Chr2:48411484-48411503 None:intergenic 40.0%
! TCAACTATGGTTGATGTAGG+AGG + Chr2:48411388-48411407 MsG0280009232.01.T01:CDS 40.0%
!! ACAAGGCTTTGTTTGGAATG+TGG + Chr2:48411076-48411095 MsG0280009232.01.T01:CDS 40.0%
!! ACTTGTCACAAGGCTTTGTT+TGG + Chr2:48411069-48411088 MsG0280009232.01.T01:CDS 40.0%
!! TCTTGAGGGAGTATCAACTA+TGG + Chr2:48411375-48411394 MsG0280009232.01.T01:CDS 40.0%
AATAGGTTACCTGGAGTAGG+TGG - Chr2:48411505-48411524 None:intergenic 45.0%
ACACTCTCTGCTATGGTGTT+AGG + Chr2:48410733-48410752 MsG0280009232.01.T01:CDS 45.0%
ACTACTGTCACCTGTTTGTG+AGG - Chr2:48410710-48410729 None:intergenic 45.0%
AGTAGTATGGCATCTCCTTG+TGG - Chr2:48411670-48411689 None:intergenic 45.0%
AGTTCTTTCCCTTCCACCAA+CGG - Chr2:48412185-48412204 None:intergenic 45.0%
ATCATGTTTCTCACCGTTGG+TGG + Chr2:48412169-48412188 MsG0280009232.01.T01:CDS 45.0%
ATGAATCGAGATGCGTCTGT+TGG - Chr2:48412133-48412152 None:intergenic 45.0%
CACGCCATTTACTTGTCACA+AGG + Chr2:48411059-48411078 MsG0280009232.01.T01:CDS 45.0%
GAGTGTATGCCATAACTGGT+CGG + Chr2:48412009-48412028 MsG0280009232.01.T01:intron 45.0%
GAGTTCCATCACTTCGAGAA+TGG - Chr2:48412278-48412297 None:intergenic 45.0%
GTTTATGGGGTCACTTCTTC+TGG + Chr2:48410988-48411007 MsG0280009232.01.T01:CDS 45.0%
! ACTATGGTTGATGTAGGAGG+TGG + Chr2:48411391-48411410 MsG0280009232.01.T01:CDS 45.0%
!! GGTAAGTCGGAGTGTTGATT+TGG - Chr2:48410874-48410893 None:intergenic 45.0%
!! TCTGTTGGTTCTGGAACATC+TGG - Chr2:48412118-48412137 None:intergenic 45.0%
!! TGGGACTCACATGATTTGGT+GGG + Chr2:48411842-48411861 MsG0280009232.01.T01:intron 45.0%
AGTAGTACCATCACCGTCGT+TGG - Chr2:48410962-48410981 None:intergenic 50.0%
GAAAATGCACCACCTACTCC+AGG + Chr2:48411493-48411512 MsG0280009232.01.T01:CDS 50.0%
GGAACTCACACCTCACAAAC+AGG + Chr2:48410697-48410716 MsG0280009232.01.T01:CDS 50.0%
GTTTCCAATCGCACCAACGA+CGG + Chr2:48410946-48410965 MsG0280009232.01.T01:CDS 50.0%
! GTGGGACTCACATGATTTGG+TGG + Chr2:48411841-48411860 MsG0280009232.01.T01:intron 50.0%
! GTTTCTCACCGTTGGTGGAA+GGG + Chr2:48412174-48412193 MsG0280009232.01.T01:CDS 50.0%
! TGTTTCTCACCGTTGGTGGA+AGG + Chr2:48412173-48412192 MsG0280009232.01.T01:CDS 50.0%
AATCGCACCAACGACGGTGA+TGG + Chr2:48410952-48410971 MsG0280009232.01.T01:CDS 55.0%
ATCACCGTCGTTGGTGCGAT+TGG - Chr2:48410953-48410972 None:intergenic 55.0%
GTTGATGTAGGAGGTGGCAG+TGG + Chr2:48411397-48411416 MsG0280009232.01.T01:CDS 55.0%
!! CGAGATGCGTCTGTTGGTTC+TGG - Chr2:48412127-48412146 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
Chr2 gene 48410679 48412306 48410679 ID=MsG0280009232.01;Name=MsG0280009232.01
Chr2 mRNA 48410679 48412306 48410679 ID=MsG0280009232.01.T01;Parent=MsG0280009232.01;Name=MsG0280009232.01.T01;_AED=0.34;_eAED=0.34;_QI=0|0|0|1|1|1|5|0|329
Chr2 exon 48410679 48411097 48410679 ID=MsG0280009232.01.T01:exon:44763;Parent=MsG0280009232.01.T01
Chr2 exon 48411203 48411270 48411203 ID=MsG0280009232.01.T01:exon:44764;Parent=MsG0280009232.01.T01
Chr2 exon 48411374 48411514 48411374 ID=MsG0280009232.01.T01:exon:44765;Parent=MsG0280009232.01.T01
Chr2 exon 48411629 48411693 48411629 ID=MsG0280009232.01.T01:exon:44766;Parent=MsG0280009232.01.T01
Chr2 exon 48412010 48412306 48412010 ID=MsG0280009232.01.T01:exon:44767;Parent=MsG0280009232.01.T01
Chr2 CDS 48410679 48411097 48410679 ID=MsG0280009232.01.T01:cds;Parent=MsG0280009232.01.T01
Chr2 CDS 48411203 48411270 48411203 ID=MsG0280009232.01.T01:cds;Parent=MsG0280009232.01.T01
Chr2 CDS 48411374 48411514 48411374 ID=MsG0280009232.01.T01:cds;Parent=MsG0280009232.01.T01
Chr2 CDS 48411629 48411693 48411629 ID=MsG0280009232.01.T01:cds;Parent=MsG0280009232.01.T01
Chr2 CDS 48412010 48412306 48412010 ID=MsG0280009232.01.T01:cds;Parent=MsG0280009232.01.T01
Gene Sequence

>MsG0280009232.01.T01

ATGAACAATAATGTTGTGGGAACTCACACCTCACAAACAGGTGACAGTAGTGATACACTCTCTGCTATGGTGTTAGGTTCTGTTATGGTTCTTCCTGCAGTTCTTAATGCTGCAATTGAGCTCAAATTATTTGATATCATTGCTAGCAGCAATGATGGATTTATGTCAGTCTTTGAAATTGCTTCAAAGTTACCAAATCAACACTCCGACTTACCAAATAGACTCGATCGTGTTTTGTGTGTGCTTGCAAGCTACTCTCTTCTTTCTGTTTCCAATCGCACCAACGACGGTGATGGTACTACTTTGAGAGTTTATGGGGTCACTTCTTCTGGCAAATACTTTGTTGATGATGAAAATGATGGTGGTTATTTGGGCTCATTCACGCCATTTACTTGTCACAAGGCTTTGTTTGGAATGTGGTCTAATTTCAAGGAAGTAATAGTGAATGAGAGATTGACCTATTCAAGAAAGTTAATGGAATATCTATGTCTTGAGGGAGTATCAACTATGGTTGATGTAGGAGGTGGCAGTGGACAAAGTCTCAAAACAATTATTGCCAAATACCCATCAATAAAGGGAATCAATTTTGATCTTCCTCAAGTCATTGAAAATGCACCACCTACTCCAGGGATCCAACATATTGGAGGAAGCATGTTTGAAAGTGTTCCACAAGGAGATGCCATACTACTTAAGAGTGTATGCCATAACTGGTCGGATGAACAATGCATACAAATTTTAAGCAATTGTCACAAAGCTTTACCACCAAATGGAAAGGTCATTATCATAGAGCTCGCAAAACCAGATGTTCCAGAACCAACAGACGCATCTCGATTCATTTATGGTATGGACAACATCATGTTTCTCACCGTTGGTGGAAGGGAAAGAACTCTGAAAGAATATGAAAGTTTGGGTAAACGATCTGGATTTGTTAAGTTTCAAGCTGCTTGTCGTGTTTTCTCCATTCTCGAAGTGATGGAACTCTACAAATAA

Protein sequence

>MsG0280009232.01.T01

MNNNVVGTHTSQTGDSSDTLSAMVLGSVMVLPAVLNAAIELKLFDIIASSNDGFMSVFEIASKLPNQHSDLPNRLDRVLCVLASYSLLSVSNRTNDGDGTTLRVYGVTSSGKYFVDDENDGGYLGSFTPFTCHKALFGMWSNFKEVIVNERLTYSRKLMEYLCLEGVSTMVDVGGGSGQSLKTIIAKYPSIKGINFDLPQVIENAPPTPGIQHIGGSMFESVPQGDAILLKSVCHNWSDEQCIQILSNCHKALPPNGKVIIIELAKPDVPEPTDASRFIYGMDNIMFLTVGGRERTLKEYESLGKRSGFVKFQAACRVFSILEVMELYK*