AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480022322.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480022322.01.T01 MTR_4g088245 95.298 319 14 1 1 319 1 318 0.0 633
MsG0480022322.01.T01 MTR_8g069160 97.309 223 6 0 1 223 1 223 5.10e-164 457
MsG0480022322.01.T01 MTR_2g014680 61.231 325 92 8 1 314 1 302 1.36e-135 387
MsG0480022322.01.T01 MTR_4g078875 65.201 273 84 6 29 295 10 277 7.92e-122 351
MsG0480022322.01.T01 MTR_2g090735 66.078 283 84 8 27 305 10 284 8.00e-119 343
MsG0480022322.01.T01 MTR_8g102240 70.588 204 47 5 47 241 30 229 3.33e-95 290
MsG0480022322.01.T01 MTR_8g102240 70.588 204 47 5 47 241 30 229 3.42e-95 290
MsG0480022322.01.T01 MTR_5g053430 58.081 198 80 2 44 241 36 230 1.75e-75 238
MsG0480022322.01.T01 MTR_5g053430 58.081 198 80 2 44 241 36 230 3.04e-75 238
MsG0480022322.01.T01 MTR_1g093680 55.721 201 86 2 44 244 36 233 1.76e-71 229
MsG0480022322.01.T01 MTR_7g033320 55.978 184 74 3 47 227 36 215 1.07e-64 212
MsG0480022322.01.T01 MTR_1g093670 47.549 204 87 2 42 245 2 185 7.79e-54 179
MsG0480022322.01.T01 MTR_4g078895 65.152 66 19 2 45 109 16 78 2.89e-20 83.6
MsG0480022322.01.T01 MTR_6g084430 30.159 189 109 6 68 249 5 177 1.56e-15 76.3
MsG0480022322.01.T01 MTR_6g032770 30.698 215 105 10 68 267 18 203 1.93e-15 76.6
MsG0480022322.01.T01 MTR_6g012670 32.394 142 79 4 68 208 20 145 7.36e-15 74.3
MsG0480022322.01.T01 MTR_3g435150 30.952 168 93 5 68 228 16 167 7.57e-15 74.3
MsG0480022322.01.T01 MTR_1g008740 32.335 167 92 6 68 228 13 164 1.15e-14 73.9
MsG0480022322.01.T01 MTR_1g008740 30.769 182 104 7 68 242 27 193 1.59e-14 73.9
MsG0480022322.01.T01 MTR_2g014700 66.667 45 15 0 133 177 44 88 5.00e-14 67.4
MsG0480022322.01.T01 MTR_7g085260 34.104 173 83 8 68 227 17 171 2.12e-13 70.5
MsG0480022322.01.T01 MTR_3g109340 30.337 178 102 7 53 225 8 168 2.56e-13 70.1
MsG0480022322.01.T01 MTR_2g078700 31.579 171 90 7 68 228 23 176 1.30e-12 68.2
MsG0480022322.01.T01 MTR_2g080010 29.012 162 96 5 54 212 1 146 2.06e-12 67.4
MsG0480022322.01.T01 MTR_3g088110 31.034 145 78 6 68 209 7 132 2.49e-11 63.9
MsG0480022322.01.T01 MTR_7g005280 28.571 175 98 9 68 237 15 167 4.61e-11 62.8
MsG0480022322.01.T01 MTR_8g094580 29.861 144 83 5 68 210 7 133 6.74e-11 62.4
MsG0480022322.01.T01 MTR_4g089135 29.114 158 93 6 54 208 1 142 9.10e-11 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480022322.01.T01 AT1G28470 58.967 329 97 12 1 314 1 306 2.07e-119 346
MsG0480022322.01.T01 AT4G28500 70.464 237 60 5 1 236 1 228 7.58e-118 342
MsG0480022322.01.T01 AT4G29230 70.000 200 48 2 47 238 31 226 1.22e-98 298
MsG0480022322.01.T01 AT4G29230 70.000 200 48 2 47 238 31 226 4.82e-98 298
MsG0480022322.01.T01 AT4G29230 70.000 200 47 2 47 238 31 225 2.08e-97 296
MsG0480022322.01.T01 AT5G56620 65.174 201 56 4 47 236 25 222 7.63e-89 272
MsG0480022322.01.T01 AT5G56620 65.174 201 56 4 47 236 25 222 8.00e-89 271
MsG0480022322.01.T01 AT5G56620 65.174 201 56 4 47 236 25 222 1.09e-88 271
MsG0480022322.01.T01 AT1G25580 59.140 186 67 4 47 232 39 215 1.12e-69 224
MsG0480022322.01.T01 AT5G14490 49.206 189 91 4 45 232 34 218 1.17e-55 182
MsG0480022322.01.T01 AT5G14490 49.206 189 91 4 45 232 37 221 1.50e-55 184
MsG0480022322.01.T01 AT5G14490 49.206 189 91 4 45 232 34 218 1.52e-55 184
MsG0480022322.01.T01 AT5G14490 49.206 189 91 4 45 232 37 221 2.10e-55 184
MsG0480022322.01.T01 AT3G01600 48.387 186 92 3 45 229 34 216 3.76e-52 176
MsG0480022322.01.T01 AT3G04060 32.597 181 98 6 58 230 10 174 2.20e-18 84.7
MsG0480022322.01.T01 AT5G18270 34.078 179 92 7 61 230 14 175 1.35e-16 79.7
MsG0480022322.01.T01 AT5G18270 34.078 179 92 7 61 230 14 175 2.27e-16 79.0
MsG0480022322.01.T01 AT5G07680 32.738 168 90 5 68 228 3 154 1.57e-15 76.3
MsG0480022322.01.T01 AT5G07680 32.738 168 90 5 68 228 17 168 2.05e-15 76.3
MsG0480022322.01.T01 AT3G18400 31.481 162 91 5 68 225 5 150 3.93e-15 75.1
MsG0480022322.01.T01 AT5G61430 30.952 168 93 5 68 228 16 167 1.32e-14 73.9
MsG0480022322.01.T01 AT1G33060 31.176 170 88 8 55 217 11 158 4.22e-13 70.5
MsG0480022322.01.T01 AT1G33060 31.176 170 88 8 55 217 11 158 4.29e-13 70.5
MsG0480022322.01.T01 AT1G01720 30.201 149 86 5 62 209 1 132 1.73e-12 67.4
MsG0480022322.01.T01 AT4G35580 30.667 150 85 6 61 207 2 135 3.67e-12 67.4
MsG0480022322.01.T01 AT4G35580 30.667 150 85 6 61 207 2 135 3.92e-12 67.4
MsG0480022322.01.T01 AT4G35580 30.667 150 85 6 61 207 2 135 4.88e-12 67.0
MsG0480022322.01.T01 AT1G76420 30.208 192 98 9 67 247 21 187 1.65e-11 64.7
MsG0480022322.01.T01 AT1G02230 33.108 148 76 6 69 210 4 134 2.05e-11 64.7
MsG0480022322.01.T01 AT5G14000 28.659 164 91 6 68 225 15 158 3.43e-11 62.4

Find 83 sgRNAs with CRISPR-Local

Find 205 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGACCATGTTGGTCATAATT+TGG 0.115945 4:-71107170 MsG0480022322.01.T01:CDS
TAACCAAGTTTGGAATAAAT+TGG 0.141092 4:+71107134 None:intergenic
TGCAGTATCCTTGATAATAT+TGG 0.229118 4:+71107288 None:intergenic
CAATGAACTACCGGGTTTAC+CGG 0.282184 4:-71109807 MsG0480022322.01.T01:CDS
GGCCACATGAGGGGCAAGTT+AGG 0.308122 4:+71110055 None:intergenic
CCTGTTGTGTATGCTTTAGA+TGG 0.308469 4:+71107592 None:intergenic
GTACTTTCATTGCTAGTTCC+AGG 0.310383 4:+71110120 None:intergenic
GACCATGTTGGTCATAATTT+GGG 0.314192 4:-71107169 MsG0480022322.01.T01:CDS
GATACTGCAAGTTATGAAAA+TGG 0.315715 4:-71107274 MsG0480022322.01.T01:CDS
ATCAATAAGAGGATGAAGTT+TGG 0.318163 4:+71109712 None:intergenic
TCACCTTGCATAACCAAGTT+TGG 0.330649 4:+71107124 None:intergenic
GAGACAAGATGGCACAAAAC+AGG 0.362354 4:-71107526 MsG0480022322.01.T01:CDS
AACCAAGTTTGGAATAAATT+GGG 0.365436 4:+71107135 None:intergenic
TCAAGAGATACTTCAGCATT+TGG 0.367315 4:-71109759 MsG0480022322.01.T01:CDS
CTAGTCCTCTACACCAACTA+TGG 0.382144 4:-71107451 MsG0480022322.01.T01:CDS
ATGACTCACATGATCAAGAT+AGG 0.387971 4:-71110173 MsG0480022322.01.T01:CDS
GAGGAGCTTCATTATCATCT+TGG 0.390234 4:+71107227 None:intergenic
AAAATTAAAATACCTGATCT+TGG 0.400632 4:+71110019 None:intergenic
GATCTTGGAATTCAATGTTA+TGG 0.401417 4:+71110034 None:intergenic
ATCCCAATTTATTCCAAACT+TGG 0.402709 4:-71107137 MsG0480022322.01.T01:CDS
ATCCATTGCCAATCGAATAA+AGG 0.406204 4:+71107093 None:intergenic
TCAATAAGAGGATGAAGTTT+GGG 0.408567 4:+71109713 None:intergenic
CACATTGTCGAGGCTGTGTC+TGG 0.424638 4:+71107323 None:intergenic
ATAACATCTACTGTTATTCC+TGG 0.425471 4:-71110138 MsG0480022322.01.T01:CDS
CCGTTCTCTCCTTCAAGTGT+TGG 0.428976 4:+71109680 None:intergenic
GCAATGGATGCAAACAAAGC+TGG 0.432392 4:-71107079 MsG0480022322.01.T01:CDS
TGGCTCTTCCTTTATTCGAT+TGG 0.446932 4:-71107101 MsG0480022322.01.T01:CDS
TGAAGTATCTCTTGATCATT+CGG 0.452486 4:+71109767 None:intergenic
TTCCTTTATTCGATTGGCAA+TGG 0.456787 4:-71107095 MsG0480022322.01.T01:CDS
TTTGGAAGCAAAGGTTCTGT+TGG 0.466993 4:-71109741 MsG0480022322.01.T01:CDS
GCCACATGAGGGGCAAGTTA+GGG 0.468972 4:+71110056 None:intergenic
CCATCTAAAGCATACACAAC+AGG 0.476509 4:-71107592 MsG0480022322.01.T01:CDS
TAACATTGAATTCCAAGATC+AGG 0.478563 4:-71110031 MsG0480022322.01.T01:intron
GTATTGATGCATCACCCAAT+TGG 0.485290 4:+71107405 None:intergenic
AGAAGCCAGAGAAAACCAAT+TGG 0.487035 4:-71107420 MsG0480022322.01.T01:CDS
TGATAATGAAGCTCCTCCTA+TGG 0.487564 4:-71107221 MsG0480022322.01.T01:CDS
GCCTTCCATAGTTGGTGTAG+AGG 0.488969 4:+71107446 None:intergenic
GGGTGGAATCAATGAACTAC+CGG 0.491627 4:-71109816 MsG0480022322.01.T01:CDS
TTTATTGATGGTGTTATGAA+AGG 0.492139 4:-71107487 MsG0480022322.01.T01:CDS
TTCATAAATTATGACCATGT+TGG 0.496915 4:-71107181 MsG0480022322.01.T01:CDS
GAGTTCATACCAACACTTGA+AGG 0.498892 4:-71109689 MsG0480022322.01.T01:CDS
ACTTCAGCATTTGGAAGCAA+AGG 0.499727 4:-71109750 MsG0480022322.01.T01:CDS
GCAAGTTAGGGTTCGAACTT+CGG 0.505146 4:+71110068 None:intergenic
TTCACTCCCGCCGGTAAACC+CGG 0.515913 4:+71109797 None:intergenic
TGGTGAAATAGTTGTTTCAA+AGG 0.519548 4:-71107353 MsG0480022322.01.T01:CDS
AGATCAGGCACTTCTTTCAC+AGG 0.523371 4:-71107615 MsG0480022322.01.T01:CDS
AATGGACTGATGATAAATCA+AGG 0.525858 4:-71107256 MsG0480022322.01.T01:CDS
AAATAATTCCAATATTATCA+AGG 0.530116 4:-71107296 MsG0480022322.01.T01:CDS
GGTATGAACTCATCAATAAG+AGG 0.531878 4:+71109701 None:intergenic
ATTCCAAACTTGGTTATGCA+AGG 0.537547 4:-71107127 MsG0480022322.01.T01:CDS
TGACTCACATGATCAAGATA+GGG 0.539762 4:-71110172 MsG0480022322.01.T01:CDS
TCTCTTCTTCATTACTACCA+AGG 0.544705 4:+71107380 None:intergenic
AGTAATGAAGAAGAGAAAGA+TGG 0.544775 4:-71107373 MsG0480022322.01.T01:CDS
GAAGCCAGAGAAAACCAATT+GGG 0.545727 4:-71107419 MsG0480022322.01.T01:CDS
GTTAGGGTTCGAACTTCGGT+TGG 0.551703 4:+71110072 None:intergenic
AAGGTTCAAACTGATGAAGA+AGG 0.557893 4:-71107553 MsG0480022322.01.T01:CDS
TGAGAATTGTAGTAATCCAT+AGG 0.559542 4:+71107205 None:intergenic
AAGAAGGAAGTGAGACAAGA+TGG 0.561201 4:-71107537 MsG0480022322.01.T01:CDS
AGGAACAAGGAAAAGAAGAA+AGG 0.568088 4:-71107572 MsG0480022322.01.T01:CDS
TTCAATGTTATGGCCACATG+AGG 0.572377 4:+71110044 None:intergenic
GAACTACCGGGTTTACCGGC+GGG 0.574315 4:-71109803 MsG0480022322.01.T01:CDS
CAATGGATGCAAACAAAGCT+GGG 0.577780 4:-71107078 MsG0480022322.01.T01:CDS
TCCTCTACACCAACTATGGA+AGG 0.579155 4:-71107447 MsG0480022322.01.T01:CDS
AACTTGGTTATGCAAGGTGA+TGG 0.581693 4:-71107121 MsG0480022322.01.T01:CDS
ACACATCCAGAAAAGCTACC+AGG 0.603148 4:-71109647 MsG0480022322.01.T01:intron
CAATGTTATGGCCACATGAG+GGG 0.604114 4:+71110046 None:intergenic
ACCCTAACTTGCCCCTCATG+TGG 0.610760 4:-71110057 MsG0480022322.01.T01:CDS
TCAATGTTATGGCCACATGA+GGG 0.611845 4:+71110045 None:intergenic
AGACAAGATGGCACAAAACA+GGG 0.622480 4:-71107525 MsG0480022322.01.T01:CDS
CTTCTTCATTACTACCAAGG+TGG 0.625108 4:+71107383 None:intergenic
AAGCATACACAACAGGAACA+AGG 0.626885 4:-71107585 MsG0480022322.01.T01:CDS
TTATTTCCACCACATTGTCG+AGG 0.627002 4:+71107313 None:intergenic
CCAACACTTGAAGGAGAGAA+CGG 0.633139 4:-71109680 MsG0480022322.01.T01:CDS
GGATCAAACTTCACTCCCGC+CGG 0.638080 4:+71109788 None:intergenic
GACTCACATGATCAAGATAG+GGG 0.642351 4:-71110171 MsG0480022322.01.T01:CDS
ACACAGCCTCGACAATGTGG+TGG 0.657333 4:-71107319 MsG0480022322.01.T01:CDS
GAATTGTAGTAATCCATAGG+AGG 0.664154 4:+71107208 None:intergenic
CAATCGAAGAGATCATGACA+TGG 0.666033 4:-71110200 None:intergenic
TGAACTACCGGGTTTACCGG+CGG 0.666476 4:-71109804 MsG0480022322.01.T01:CDS
GTGATGCATCAATACCACCT+TGG 0.670736 4:-71107397 MsG0480022322.01.T01:CDS
CAGACACAGCCTCGACAATG+TGG 0.682956 4:-71107322 MsG0480022322.01.T01:CDS
TTCCCAAATTATGACCAACA+TGG 0.685630 4:+71107167 None:intergenic
GGTGGAATCAATGAACTACC+GGG 0.690700 4:-71109815 MsG0480022322.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAAAACAATAAATAAAGTT+TGG + Chr4:71107383-71107402 None:intergenic 10.0%
!!! TAATATATATTTACTCTTTT+TGG - Chr4:71108014-71108033 MsG0480022322.01.T01:intron 10.0%
!!! TTTAAAATTATATAGATAGA+TGG - Chr4:71108077-71108096 MsG0480022322.01.T01:intron 10.0%
!! AAAAAAAAATACAAACACTA+AGG + Chr4:71107274-71107293 None:intergenic 15.0%
!! AAAAAAAATACAAACACTAA+GGG + Chr4:71107273-71107292 None:intergenic 15.0%
!! AAATAATTCCAATATTATCA+AGG - Chr4:71109953-71109972 MsG0480022322.01.T01:intron 15.0%
!! ATACAATGTATATATTTCAT+AGG + Chr4:71108166-71108185 None:intergenic 15.0%
!! TTGATTATATTTAACTCATA+AGG - Chr4:71108622-71108641 MsG0480022322.01.T01:intron 15.0%
!!! AAAAAAATAGCTGTATTTTT+TGG + Chr4:71107959-71107978 None:intergenic 15.0%
!!! ATATACATTGTATTTTTTGA+TGG - Chr4:71108173-71108192 MsG0480022322.01.T01:intron 15.0%
!!! ATGTTTTATCTAAAATTTAG+TGG - Chr4:71107817-71107836 MsG0480022322.01.T01:intron 15.0%
!!! CTAATTATTTTTTTTGGATT+CGG + Chr4:71109138-71109157 None:intergenic 15.0%
!!! TAATACATGAACATTTTATT+TGG + Chr4:71109395-71109414 None:intergenic 15.0%
!!! TTGTCTCTAATTATTTTTTT+TGG + Chr4:71109144-71109163 None:intergenic 15.0%
!!! TTTGTATTATGTTAATTTTC+AGG + Chr4:71108549-71108568 None:intergenic 15.0%
!!! TTTTTATAACACTTTTTTGA+AGG - Chr4:71107883-71107902 MsG0480022322.01.T01:intron 15.0%
!! AAAATTAAAATACCTGATCT+TGG + Chr4:71107233-71107252 None:intergenic 20.0%
!! AAAGTTTAATAACTAGAGTT+GGG - Chr4:71108202-71108221 MsG0480022322.01.T01:intron 20.0%
!! AATTTATTTAATAAAGACCC+TGG - Chr4:71108253-71108272 MsG0480022322.01.T01:intron 20.0%
!! ACTCTAGTTATTAAACTTTA+AGG + Chr4:71108201-71108220 None:intergenic 20.0%
!! TAAAGTTTAATAACTAGAGT+TGG - Chr4:71108201-71108220 MsG0480022322.01.T01:intron 20.0%
!!! ATGAAGTCATCTTTAATTTT+TGG + Chr4:71108690-71108709 None:intergenic 20.0%
! AAAAAATTAATTGCATCTCC+AGG + Chr4:71108943-71108962 None:intergenic 25.0%
! AACTGCACATAATTATCAAA+AGG - Chr4:71108890-71108909 MsG0480022322.01.T01:intron 25.0%
! AAGTTTAATAACTAGAGTTG+GGG - Chr4:71108203-71108222 MsG0480022322.01.T01:intron 25.0%
! ACTGCACATAATTATCAAAA+GGG - Chr4:71108891-71108910 MsG0480022322.01.T01:intron 25.0%
! ATAACACCATCAATAAAAAC+TGG + Chr4:71109759-71109778 None:intergenic 25.0%
! GTAAAATGTTAATTAAGACC+TGG + Chr4:71107623-71107642 None:intergenic 25.0%
! GTACACTATTCTTTAATCAT+GGG - Chr4:71108507-71108526 MsG0480022322.01.T01:intron 25.0%
! TACTTGAGTTACATAAAAAC+AGG + Chr4:71108759-71108778 None:intergenic 25.0%
! TAGATCTAAACAAATTGGTT+CGG - Chr4:71109517-71109536 MsG0480022322.01.T01:intron 25.0%
! TAGTAGTATATGCATAAAAC+AGG + Chr4:71107696-71107715 None:intergenic 25.0%
! TGACATGTGATTAATGTTTA+GGG + Chr4:71108859-71108878 None:intergenic 25.0%
! TGGTAAAATATCTTATTCCA+GGG + Chr4:71108273-71108292 None:intergenic 25.0%
! TGTACACTATTCTTTAATCA+TGG - Chr4:71108506-71108525 MsG0480022322.01.T01:intron 25.0%
! TGTTTACACAAACTTCTATT+TGG + Chr4:71108584-71108603 None:intergenic 25.0%
! TTCATAAATTATGACCATGT+TGG - Chr4:71110068-71110087 MsG0480022322.01.T01:CDS 25.0%
! TTGACATGTGATTAATGTTT+AGG + Chr4:71108860-71108879 None:intergenic 25.0%
!! AACCAAGTTTGGAATAAATT+GGG + Chr4:71110117-71110136 None:intergenic 25.0%
!! CACATGTCCTTTTAATATTT+TGG + Chr4:71109219-71109238 None:intergenic 25.0%
!! GTTTTATGCATATACTACTA+GGG - Chr4:71107696-71107715 MsG0480022322.01.T01:intron 25.0%
!! TAACCAAGTTTGGAATAAAT+TGG + Chr4:71110118-71110137 None:intergenic 25.0%
!! TAAGATATTTTACCAGTCAA+AGG - Chr4:71108278-71108297 MsG0480022322.01.T01:intron 25.0%
!! TGTTTTATGCATATACTACT+AGG - Chr4:71107695-71107714 MsG0480022322.01.T01:intron 25.0%
!!! AGTCATCTTTAATTTTTGGA+AGG + Chr4:71108686-71108705 None:intergenic 25.0%
!!! GAAAGTGTAAGACATTTTTT+TGG + Chr4:71109261-71109280 None:intergenic 25.0%
!!! GTCCTTTTAATATTTTGGAA+CGG + Chr4:71109214-71109233 None:intergenic 25.0%
!!! TAACACTTTTTTGAAGGAAA+CGG - Chr4:71107889-71107908 MsG0480022322.01.T01:intron 25.0%
!!! TATTTTTTTTGGATTCGGAT+CGG + Chr4:71109133-71109152 None:intergenic 25.0%
!!! TCCTTTTAATATTTTGGAAC+GGG + Chr4:71109213-71109232 None:intergenic 25.0%
!!! TTACTTTCTAACTTTTTCTC+TGG - Chr4:71107639-71107658 MsG0480022322.01.T01:intron 25.0%
!!! TTGGTTTGTGAAATAATTAG+CGG - Chr4:71108227-71108246 MsG0480022322.01.T01:intron 25.0%
!!! TTTATTGATGGTGTTATGAA+AGG - Chr4:71109762-71109781 MsG0480022322.01.T01:CDS 25.0%
AGTAATGAAGAAGAGAAAGA+TGG - Chr4:71109876-71109895 MsG0480022322.01.T01:intron 30.0%
AGTTTAATAACTAGAGTTGG+GGG - Chr4:71108204-71108223 MsG0480022322.01.T01:intron 30.0%
ATAACATCTACTGTTATTCC+TGG - Chr4:71107111-71107130 MsG0480022322.01.T01:CDS 30.0%
ATAGAGATAAAACACAGACT+CGG - Chr4:71109166-71109185 MsG0480022322.01.T01:intron 30.0%
ATCAATAAGAGGATGAAGTT+TGG + Chr4:71107540-71107559 None:intergenic 30.0%
ATCCCAATTTATTCCAAACT+TGG - Chr4:71110112-71110131 MsG0480022322.01.T01:CDS 30.0%
ATGAAAATAAAGCACAAGGA+AGG - Chr4:71108797-71108816 MsG0480022322.01.T01:intron 30.0%
CTGGTAAAATATCTTATTCC+AGG + Chr4:71108274-71108293 None:intergenic 30.0%
GAAGAAATTAAGCAAATGAG+AGG - Chr4:71108397-71108416 MsG0480022322.01.T01:intron 30.0%
GAGTAACAGATTGACATAAA+TGG + Chr4:71108999-71109018 None:intergenic 30.0%
GATACTGCAAGTTATGAAAA+TGG - Chr4:71109975-71109994 MsG0480022322.01.T01:intron 30.0%
GATCTTGGAATTCAATGTTA+TGG + Chr4:71107218-71107237 None:intergenic 30.0%
GCATTCTCAGTGATAAAATT+TGG - Chr4:71107929-71107948 MsG0480022322.01.T01:intron 30.0%
GGGTTTAGATCTAAACAAAT+TGG - Chr4:71109512-71109531 MsG0480022322.01.T01:intron 30.0%
TAAAAAAAGATGGACAGATC+AGG - Chr4:71109619-71109638 MsG0480022322.01.T01:intron 30.0%
TAACATTGAATTCCAAGATC+AGG - Chr4:71107218-71107237 MsG0480022322.01.T01:CDS 30.0%
TCAATAAGAGGATGAAGTTT+GGG + Chr4:71107539-71107558 None:intergenic 30.0%
TGAGAATTGTAGTAATCCAT+AGG + Chr4:71110047-71110066 None:intergenic 30.0%
TGTGTGTGAATGATTGAATA+GGG - Chr4:71107413-71107432 MsG0480022322.01.T01:CDS 30.0%
TTGTGTGTGAATGATTGAAT+AGG - Chr4:71107412-71107431 MsG0480022322.01.T01:CDS 30.0%
! ACTAGACCAGTTTTTATTGA+TGG - Chr4:71109750-71109769 MsG0480022322.01.T01:CDS 30.0%
! ACTATTTGACAACGTGTTTT+GGG - Chr4:71109414-71109433 MsG0480022322.01.T01:intron 30.0%
! ATTTTATCACTGAGAATGCA+AGG + Chr4:71107928-71107947 None:intergenic 30.0%
! TACTATTTGACAACGTGTTT+TGG - Chr4:71109413-71109432 MsG0480022322.01.T01:intron 30.0%
! TGAAGTATCTCTTGATCATT+CGG + Chr4:71107485-71107504 None:intergenic 30.0%
! TGCAGTATCCTTGATAATAT+TGG + Chr4:71109964-71109983 None:intergenic 30.0%
! TGGTGAAATAGTTGTTTCAA+AGG - Chr4:71109896-71109915 MsG0480022322.01.T01:intron 30.0%
! TTTTATCACTGAGAATGCAA+GGG + Chr4:71107927-71107946 None:intergenic 30.0%
!! AATGGACTGATGATAAATCA+AGG - Chr4:71109993-71110012 MsG0480022322.01.T01:intron 30.0%
!! AGTCTTTTGTTATAACATGC+AGG - Chr4:71109594-71109613 MsG0480022322.01.T01:intron 30.0%
!! ATCTCTTTTCCGTTTGTTTT+CGG - Chr4:71109055-71109074 MsG0480022322.01.T01:intron 30.0%
!!! CCTTGTGCTTTATTTTCATT+GGG + Chr4:71108796-71108815 None:intergenic 30.0%
!!! TCCTTGTGCTTTATTTTCAT+TGG + Chr4:71108797-71108816 None:intergenic 30.0%
AAGGTTCAAACTGATGAAGA+AGG - Chr4:71109696-71109715 MsG0480022322.01.T01:CDS 35.0%
AGGAACAAGGAAAAGAAGAA+AGG - Chr4:71109677-71109696 MsG0480022322.01.T01:CDS 35.0%
ATCCATTGCCAATCGAATAA+AGG + Chr4:71110159-71110178 None:intergenic 35.0%
ATGACTCACATGATCAAGAT+AGG - Chr4:71107076-71107095 MsG0480022322.01.T01:CDS 35.0%
ATTCCAAACTTGGTTATGCA+AGG - Chr4:71110122-71110141 MsG0480022322.01.T01:CDS 35.0%
CAATCCAAAAGCTTAAGTGT+CGG + Chr4:71109107-71109126 None:intergenic 35.0%
CATGCAGGTGTAAAAAAAGA+TGG - Chr4:71109609-71109628 MsG0480022322.01.T01:intron 35.0%
CCCAATGAAAATAAAGCACA+AGG - Chr4:71108793-71108812 MsG0480022322.01.T01:intron 35.0%
GAAAGAACTAACCAAAATCC+TGG - Chr4:71108922-71108941 MsG0480022322.01.T01:intron 35.0%
GAAGGAGACAAAAATGAGAA+AGG - Chr4:71108815-71108834 MsG0480022322.01.T01:intron 35.0%
GAATTGTAGTAATCCATAGG+AGG + Chr4:71110044-71110063 None:intergenic 35.0%
GACCATGTTGGTCATAATTT+GGG - Chr4:71110080-71110099 MsG0480022322.01.T01:CDS 35.0%
GCCCGTTCCAAAATATTAAA+AGG - Chr4:71109209-71109228 MsG0480022322.01.T01:intron 35.0%
GGTATGAACTCATCAATAAG+AGG + Chr4:71107551-71107570 None:intergenic 35.0%
TAGAGATAAAACACAGACTC+GGG - Chr4:71109167-71109186 MsG0480022322.01.T01:intron 35.0%
TCAAGAGATACTTCAGCATT+TGG - Chr4:71107490-71107509 MsG0480022322.01.T01:CDS 35.0%
TCTCTTCTTCATTACTACCA+AGG + Chr4:71109872-71109891 None:intergenic 35.0%
TGACCATGTTGGTCATAATT+TGG - Chr4:71110079-71110098 MsG0480022322.01.T01:CDS 35.0%
TGACTCACATGATCAAGATA+GGG - Chr4:71107077-71107096 MsG0480022322.01.T01:CDS 35.0%
TGAGTGTACAAAAAGTGAGT+TGG + Chr4:71109573-71109592 None:intergenic 35.0%
TTATGAGCAGAAATCGAACT+CGG - Chr4:71107307-71107326 MsG0480022322.01.T01:CDS 35.0%
TTCCCAAATTATGACCAACA+TGG + Chr4:71110085-71110104 None:intergenic 35.0%
TTCCTTTATTCGATTGGCAA+TGG - Chr4:71110154-71110173 MsG0480022322.01.T01:CDS 35.0%
TTGGAAGGATCATCAAGAAA+AGG + Chr4:71108671-71108690 None:intergenic 35.0%
TTTATCACTGAGAATGCAAG+GGG + Chr4:71107926-71107945 None:intergenic 35.0%
! ATGCATGATGGTTTGGATTA+TGG - Chr4:71107666-71107685 MsG0480022322.01.T01:intron 35.0%
! GACACTTAAGCTTTTGGATT+GGG - Chr4:71109106-71109125 MsG0480022322.01.T01:intron 35.0%
! GATTGACATAAATGGCTTGT+TGG + Chr4:71108991-71109010 None:intergenic 35.0%
! TAATTGCATCTCCAGGATTT+TGG + Chr4:71108936-71108955 None:intergenic 35.0%
AACTTGGTTATGCAAGGTGA+TGG - Chr4:71110128-71110147 MsG0480022322.01.T01:CDS 40.0%
AAGAAGGAAGTGAGACAAGA+TGG - Chr4:71109712-71109731 MsG0480022322.01.T01:CDS 40.0%
AAGCATACACAACAGGAACA+AGG - Chr4:71109664-71109683 MsG0480022322.01.T01:CDS 40.0%
ACTTCAGCATTTGGAAGCAA+AGG - Chr4:71107499-71107518 MsG0480022322.01.T01:CDS 40.0%
ACTTTCAACACTCACACACA+TGG - Chr4:71107338-71107357 MsG0480022322.01.T01:CDS 40.0%
AGAAGCCAGAGAAAACCAAT+TGG - Chr4:71109829-71109848 MsG0480022322.01.T01:intron 40.0%
AGACAAGATGGCACAAAACA+GGG - Chr4:71109724-71109743 MsG0480022322.01.T01:CDS 40.0%
CAATGGATGCAAACAAAGCT+GGG - Chr4:71110171-71110190 MsG0480022322.01.T01:CDS 40.0%
CAGTCAAAGGAATAACGTCT+AGG - Chr4:71108291-71108310 MsG0480022322.01.T01:intron 40.0%
CTAGACGTTATTCCTTTGAC+TGG + Chr4:71108293-71108312 None:intergenic 40.0%
CTTCTTCATTACTACCAAGG+TGG + Chr4:71109869-71109888 None:intergenic 40.0%
GAAGCCAGAGAAAACCAATT+GGG - Chr4:71109830-71109849 MsG0480022322.01.T01:intron 40.0%
GACTCACATGATCAAGATAG+GGG - Chr4:71107078-71107097 MsG0480022322.01.T01:CDS 40.0%
GAGGAGCTTCATTATCATCT+TGG + Chr4:71110025-71110044 None:intergenic 40.0%
GAGTTCATACCAACACTTGA+AGG - Chr4:71107560-71107579 MsG0480022322.01.T01:CDS 40.0%
GTACTTTCATTGCTAGTTCC+AGG + Chr4:71107132-71107151 None:intergenic 40.0%
GTGTGAATGATTGAATAGGG+TGG - Chr4:71107416-71107435 MsG0480022322.01.T01:CDS 40.0%
TAATAACTAGAGTTGGGGGT+TGG - Chr4:71108208-71108227 MsG0480022322.01.T01:intron 40.0%
TCAATGTTATGGCCACATGA+GGG + Chr4:71107207-71107226 None:intergenic 40.0%
TCACCTTGCATAACCAAGTT+TGG + Chr4:71110128-71110147 None:intergenic 40.0%
TGGCTCTTCCTTTATTCGAT+TGG - Chr4:71110148-71110167 MsG0480022322.01.T01:CDS 40.0%
TGGTTTGATGCATGATGGTT+TGG - Chr4:71107659-71107678 MsG0480022322.01.T01:intron 40.0%
TTATTTCCACCACATTGTCG+AGG + Chr4:71109939-71109958 None:intergenic 40.0%
TTCAATGTTATGGCCACATG+AGG + Chr4:71107208-71107227 None:intergenic 40.0%
TTTGGAAGCAAAGGTTCTGT+TGG - Chr4:71107508-71107527 MsG0480022322.01.T01:CDS 40.0%
! AAGTTTGGAGCGTAAGTGAT+TGG + Chr4:71107368-71107387 None:intergenic 40.0%
! CCATCTAAAGCATACACAAC+AGG - Chr4:71109657-71109676 MsG0480022322.01.T01:CDS 40.0%
! CCTGTTGTGTATGCTTTAGA+TGG + Chr4:71109660-71109679 None:intergenic 40.0%
! CGACACTTAAGCTTTTGGAT+TGG - Chr4:71109105-71109124 MsG0480022322.01.T01:intron 40.0%
! CTTCTTTTGCCTTCCATAGT+TGG + Chr4:71109814-71109833 None:intergenic 40.0%
! GTATTGATGCATCACCCAAT+TGG + Chr4:71109847-71109866 None:intergenic 40.0%
! TGATAATGAAGCTCCTCCTA+TGG - Chr4:71110028-71110047 MsG0480022322.01.T01:intron 40.0%
! TTAAGACCTGGTAGCTTTTC+TGG + Chr4:71107611-71107630 None:intergenic 40.0%
! TTCTCTGGTTTGATGCATGA+TGG - Chr4:71107654-71107673 MsG0480022322.01.T01:intron 40.0%
!! AATTGGTTCGGTCTAATGTC+AGG - Chr4:71109529-71109548 MsG0480022322.01.T01:intron 40.0%
!! ATTGGTTCGGTCTAATGTCA+GGG - Chr4:71109530-71109549 MsG0480022322.01.T01:intron 40.0%
!!! AACGTGTTTTGGGATCATTC+TGG - Chr4:71109424-71109443 MsG0480022322.01.T01:intron 40.0%
!!! ATCACCCAATTGGTTTTCTC+TGG + Chr4:71109837-71109856 None:intergenic 40.0%
!!! TTAATATTTTGGAACGGGCC+AGG + Chr4:71109208-71109227 None:intergenic 40.0%
ACACATCCAGAAAAGCTACC+AGG - Chr4:71107602-71107621 MsG0480022322.01.T01:CDS 45.0%
AGAAATCGAACTCGGTACTC+TGG - Chr4:71107315-71107334 MsG0480022322.01.T01:CDS 45.0%
AGATCAGGCACTTCTTTCAC+AGG - Chr4:71109634-71109653 MsG0480022322.01.T01:intron 45.0%
AGTGTGATCGGGTTAAGAGA+CGG - Chr4:71109491-71109510 MsG0480022322.01.T01:intron 45.0%
CAATGAACTACCGGGTTTAC+CGG - Chr4:71107442-71107461 MsG0480022322.01.T01:CDS 45.0%
CAATGTTATGGCCACATGAG+GGG + Chr4:71107206-71107225 None:intergenic 45.0%
CCAACACTTGAAGGAGAGAA+CGG - Chr4:71107569-71107588 MsG0480022322.01.T01:CDS 45.0%
CTAGTCCTCTACACCAACTA+TGG - Chr4:71109798-71109817 MsG0480022322.01.T01:CDS 45.0%
GAGACAAGATGGCACAAAAC+AGG - Chr4:71109723-71109742 MsG0480022322.01.T01:CDS 45.0%
GCAAGTTAGGGTTCGAACTT+CGG + Chr4:71107184-71107203 None:intergenic 45.0%
GCAATGGATGCAAACAAAGC+TGG - Chr4:71110170-71110189 MsG0480022322.01.T01:CDS 45.0%
GGGTGGAATCAATGAACTAC+CGG - Chr4:71107433-71107452 MsG0480022322.01.T01:CDS 45.0%
GGTGGAATCAATGAACTACC+GGG - Chr4:71107434-71107453 MsG0480022322.01.T01:CDS 45.0%
GTGATGCATCAATACCACCT+TGG - Chr4:71109852-71109871 MsG0480022322.01.T01:intron 45.0%
TCCTCTACACCAACTATGGA+AGG - Chr4:71109802-71109821 MsG0480022322.01.T01:CDS 45.0%
TGCATGCAAACTTGTCGAGT+TGG + Chr4:71108444-71108463 None:intergenic 45.0%
!! TTTCCGTTTGTTTTCGGCAG+TGG - Chr4:71109061-71109080 MsG0480022322.01.T01:intron 45.0%
!!! TATATATATATATTTTTTGA+AGG - Chr4:71108113-71108132 MsG0480022322.01.T01:intron 5.0%
ACGCCACTGCCGAAAACAAA+CGG + Chr4:71109067-71109086 None:intergenic 50.0%
AGTTGGATGTGTCCCTCACT+TGG + Chr4:71109556-71109575 None:intergenic 50.0%
CAATGCCACCACACTGAGTT+TGG + Chr4:71108475-71108494 None:intergenic 50.0%
CCGTTCTCTCCTTCAAGTGT+TGG + Chr4:71107572-71107591 None:intergenic 50.0%
CGTACCTCATCGAGTGTGAT+CGG - Chr4:71109479-71109498 MsG0480022322.01.T01:intron 50.0%
CTAATGTCAGGGCCAAGTGA+GGG - Chr4:71109541-71109560 MsG0480022322.01.T01:intron 50.0%
GTACCTCATCGAGTGTGATC+GGG - Chr4:71109480-71109499 MsG0480022322.01.T01:intron 50.0%
GTGTGATCGGGTTAAGAGAC+GGG - Chr4:71109492-71109511 MsG0480022322.01.T01:intron 50.0%
GTTAGGGTTCGAACTTCGGT+TGG + Chr4:71107180-71107199 None:intergenic 50.0%
TAACCCGATCACACTCGATG+AGG + Chr4:71109486-71109505 None:intergenic 50.0%
TCTAATGTCAGGGCCAAGTG+AGG - Chr4:71109540-71109559 MsG0480022322.01.T01:intron 50.0%
TGAGTGCACCAAACTCAGTG+TGG - Chr4:71108464-71108483 MsG0480022322.01.T01:intron 50.0%
TGGCGTCACAAAACCTGATC+CGG - Chr4:71109081-71109100 MsG0480022322.01.T01:intron 50.0%
! GCCTTCCATAGTTGGTGTAG+AGG + Chr4:71109806-71109825 None:intergenic 50.0%
!! CCAAAAGCTTAAGTGTCGGC+CGG + Chr4:71109103-71109122 None:intergenic 50.0%
ACACAGCCTCGACAATGTGG+TGG - Chr4:71109930-71109949 MsG0480022322.01.T01:intron 55.0%
ACAGACTCGGGTTAACCCTC+GGG - Chr4:71109179-71109198 MsG0480022322.01.T01:intron 55.0%
CACAGACTCGGGTTAACCCT+CGG - Chr4:71109178-71109197 MsG0480022322.01.T01:intron 55.0%
CACATTGTCGAGGCTGTGTC+TGG + Chr4:71109929-71109948 None:intergenic 55.0%
CAGACACAGCCTCGACAATG+TGG - Chr4:71109927-71109946 MsG0480022322.01.T01:intron 55.0%
GCCACATGAGGGGCAAGTTA+GGG + Chr4:71107196-71107215 None:intergenic 55.0%
GGATCAAACTTCACTCCCGC+CGG + Chr4:71107464-71107483 None:intergenic 55.0%
GTGCACCAAACTCAGTGTGG+TGG - Chr4:71108467-71108486 MsG0480022322.01.T01:intron 55.0%
TGAACTACCGGGTTTACCGG+CGG - Chr4:71107445-71107464 MsG0480022322.01.T01:CDS 55.0%
! ACCCTAACTTGCCCCTCATG+TGG - Chr4:71107192-71107211 MsG0480022322.01.T01:CDS 55.0%
! CCGGCCGACACTTAAGCTTT+TGG - Chr4:71109100-71109119 MsG0480022322.01.T01:intron 55.0%
GAACTACCGGGTTTACCGGC+GGG - Chr4:71107446-71107465 MsG0480022322.01.T01:CDS 60.0%
GGCCACATGAGGGGCAAGTT+AGG + Chr4:71107197-71107216 None:intergenic 60.0%
GGGTTAACCCTCGGGTTACC+TGG - Chr4:71109187-71109206 MsG0480022322.01.T01:intron 60.0%
TTCACTCCCGCCGGTAAACC+CGG + Chr4:71107455-71107474 None:intergenic 60.0%
!! GCTTAAGTGTCGGCCGGATC+AGG + Chr4:71109097-71109116 None:intergenic 60.0%
GAACGGGCCAGGTAACCCGA+GGG + Chr4:71109197-71109216 None:intergenic 65.0%
GGAACGGGCCAGGTAACCCG+AGG + Chr4:71109198-71109217 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
Chr4 gene 71107063 71110208 71107063 ID=MsG0480022322.01;Name=MsG0480022322.01
Chr4 mRNA 71107063 71110208 71107063 ID=MsG0480022322.01.T01;Parent=MsG0480022322.01;Name=MsG0480022322.01.T01;_AED=0.39;_eAED=0.40;_QI=0|0|0|1|1|0.66|3|0|319
Chr4 exon 71110032 71110208 71110032 ID=MsG0480022322.01.T01:exon:2410;Parent=MsG0480022322.01.T01
Chr4 exon 71109648 71109837 71109648 ID=MsG0480022322.01.T01:exon:2409;Parent=MsG0480022322.01.T01
Chr4 exon 71107063 71107655 71107063 ID=MsG0480022322.01.T01:exon:2408;Parent=MsG0480022322.01.T01
Chr4 CDS 71110032 71110208 71110032 ID=MsG0480022322.01.T01:cds;Parent=MsG0480022322.01.T01
Chr4 CDS 71109648 71109837 71109648 ID=MsG0480022322.01.T01:cds;Parent=MsG0480022322.01.T01
Chr4 CDS 71107063 71107655 71107063 ID=MsG0480022322.01.T01:cds;Parent=MsG0480022322.01.T01
Gene Sequence

>MsG0480022322.01.T01

ATGACATGGTGCAATGACTCACATGATCAAGATAGGGGCATTGAACTAATAACATCTACTGTTATTCCTGGAACTAGCAATGAAAGTACTCTTGTTACAGATGATGACACAAAACCAACCGAAGTTCGAACCCTAACTTGCCCCTCATGTGGCCATAACATTGAATTCCAAGATCAGGGTGGAATCAATGAACTACCGGGTTTACCGGCGGGAGTGAAGTTTGATCCGAATGATCAAGAGATACTTCAGCATTTGGAAGCAAAGGTTCTGTTGGATGTGCCCAAACTTCATCCTCTTATTGATGAGTTCATACCAACACTTGAAGGAGAGAACGGAATCTGTTATACACATCCAGAAAAGCTACCAGGTGTAAAAAAAGATGGACAGATCAGGCACTTCTTTCACAGGCCATCTAAAGCATACACAACAGGAACAAGGAAAAGAAGAAAGGTTCAAACTGATGAAGAAGGAAGTGAGACAAGATGGCACAAAACAGGGAAAACTAGACCAGTTTTTATTGATGGTGTTATGAAAGGTTTCAAGAAGATACTAGTCCTCTACACCAACTATGGAAGGCAAAAGAAGCCAGAGAAAACCAATTGGGTGATGCATCAATACCACCTTGGTAGTAATGAAGAAGAGAAAGATGGTGAAATAGTTGTTTCAAAGGTGTTTTACCAGACACAGCCTCGACAATGTGGTGGAAATAATTCCAATATTATCAAGGATACTGCAAGTTATGAAAATGGACTGATGATAAATCAAGGAAATGTCCAAGATGATAATGAAGCTCCTCCTATGGATTACTACAATTCTCATTTCATAAATTATGACCATGTTGGTCATAATTTGGGAAACTCTGAATCCCAATTTATTCCAAACTTGGTTATGCAAGGTGATGGCTCTTCCTTTATTCGATTGGCAATGGATGCAAACAAAGCTGGGTTGAACAGAAATTAG
Protein sequence

>MsG0480022322.01.T01

MTWCNDSHDQDRGIELITSTVIPGTSNESTLVTDDDTKPTEVRTLTCPSCGHNIEFQDQGGINELPGLPAGVKFDPNDQEILQHLEAKVLLDVPKLHPLIDEFIPTLEGENGICYTHPEKLPGVKKDGQIRHFFHRPSKAYTTGTRKRRKVQTDEEGSETRWHKTGKTRPVFIDGVMKGFKKILVLYTNYGRQKKPEKTNWVMHQYHLGSNEEEKDGEIVVSKVFYQTQPRQCGGNNSNIIKDTASYENGLMINQGNVQDDNEAPPMDYYNSHFINYDHVGHNLGNSESQFIPNLVMQGDGSSFIRLAMDANKAGLNRN*