AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480022452.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480022452.01.T01 MTR_4g088980 97.163 282 6 2 1 280 1 282 0.0 559
MsG0480022452.01.T01 MTR_2g013220 69.888 269 74 6 9 271 21 288 3.03e-110 322
MsG0480022452.01.T01 MTR_8g098515 56.780 236 75 5 14 230 32 259 4.84e-70 220
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480022452.01.T01 AT2G20760 56.180 267 101 7 21 273 22 286 3.69e-70 220
MsG0480022452.01.T01 AT2G40060 55.760 217 84 5 28 236 16 228 3.01e-65 205
MsG0480022452.01.T01 AT3G51890 62.264 159 56 2 87 244 85 240 2.62e-57 185

Find 107 sgRNAs with CRISPR-Local

Find 216 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTTGCCTGGCTTTGGGCCT+TGG 0.150519 4:+72706795 None:intergenic
CGGAGGAAGGTAACGTTCTT+AGG 0.196876 4:-72709106 MsG0480022452.01.T01:CDS
CGGTGGGTTTGCCTGGCTTT+GGG 0.248540 4:+72706789 None:intergenic
GCAAACCCACCGACCTTTCT+AGG 0.257216 4:-72706778 MsG0480022452.01.T01:CDS
TCGGTGGGTTTGCCTGGCTT+TGG 0.260717 4:+72706788 None:intergenic
AGCATCCTTGGTTGTGATTC+AGG 0.266027 4:+72706593 None:intergenic
CCGAATACATCCGGAGATTC+CGG 0.326239 4:+72709272 None:intergenic
TTTGTGAAAATTCTCTTGAT+TGG 0.330165 4:+72706934 None:intergenic
GGCGACGACGACAACTATTC+TGG 0.330828 4:-72709356 MsG0480022452.01.T01:CDS
TGAATCTACAGTACCGTTAT+TGG 0.331003 4:+72706569 None:intergenic
GGTGCTGATCCATTTGGTTT+AGG 0.333375 4:+72706626 None:intergenic
TGAGAAGAAAAGAGGCAAAA+AGG 0.365407 4:-72706849 MsG0480022452.01.T01:CDS
AAAATTACTGGAAAGCAATT+GGG 0.366531 4:-72706901 MsG0480022452.01.T01:CDS
ATGGAAAACGGAAACGGTTA+TGG 0.368793 4:-72709194 MsG0480022452.01.T01:CDS
TGCCTGGCTTTGGGCCTTGG+AGG 0.380338 4:+72706798 None:intergenic
TTCCCTTTGGAGTCTTTAGC+AGG 0.387984 4:+72706689 None:intergenic
GGTTTAGGTGCTGATCCATT+TGG 0.396493 4:+72706641 None:intergenic
GAAAGGTCGGTGGGTTTGCC+TGG 0.402706 4:+72706782 None:intergenic
CCGGAATCTCCGGATGTATT+CGG 0.406444 4:-72709272 MsG0480022452.01.T01:CDS
GCTGCTGTTGTGTGATCTAC+AGG 0.409676 4:+72709296 None:intergenic
ATTATTGTCTATTATGACCT+TGG 0.418043 4:-72706357 MsG0480022452.01.T01:three_prime_UTR
ACTTCCGGTGCTGATCCATT+TGG 0.420411 4:+72706620 None:intergenic
AACTAGACGAGAAGGAGAAA+AGG 0.420773 4:-72707176 MsG0480022452.01.T01:CDS
ACCGTTATTGGCAGCATCCT+TGG 0.421358 4:+72706581 None:intergenic
AACAGCAGCGCCGGAATCTC+CGG 0.421407 4:-72709282 MsG0480022452.01.T01:CDS
TTGGAGTCTTTAGCAGGTGC+AGG 0.422981 4:+72706695 None:intergenic
TGTGATTCAGGTGCAACTTC+CGG 0.424313 4:+72706605 None:intergenic
CTCAATGTTGGCAACCTCAC+GGG 0.426203 4:+72706868 None:intergenic
GCAGACTGCTCCTCAGTGGC+AGG 0.431231 4:+72706531 None:intergenic
GCTTCCTCCTCCTGCTGAGA+TGG 0.448243 4:-72709132 MsG0480022452.01.T01:CDS
GTTTGTGGAACAGTTATACT+TGG 0.453267 4:-72706957 MsG0480022452.01.T01:intron
GGTGAAGTGGTCTTCGTTGA+CGG 0.458970 4:+72709382 None:intergenic
ACAAGGTTCAAAACAGAGAA+AGG 0.459770 4:-72707068 MsG0480022452.01.T01:CDS
AATGAGATTAAAGATTATTG+AGG 0.464614 4:-72707145 MsG0480022452.01.T01:CDS
GAAACAGCAACTAAACCAAA+TGG 0.475248 4:-72706656 MsG0480022452.01.T01:CDS
AAGGTCATAATAGACAATAA+TGG 0.479197 4:+72706359 None:intergenic
CTAAGAACGTTACCTTCCTC+CGG 0.484104 4:+72709107 None:intergenic
AGAATAGTTGTCGTCGTCGC+CGG 0.485975 4:+72709358 None:intergenic
AGGAGGAAGCACCGGACCAT+CGG 0.488490 4:+72709145 None:intergenic
GGATCAGCACCTAAACCAAA+TGG 0.488856 4:-72706635 MsG0480022452.01.T01:CDS
CATCACATGCACTGGTTCGA+AGG 0.488969 4:+72709214 None:intergenic
GTGATCTACAGGGACATCTT+CGG 0.492594 4:+72709307 None:intergenic
CCAGTGCATGTGATGGAAAA+CGG 0.493151 4:-72709206 MsG0480022452.01.T01:CDS
TCCTCCGGCTCCATCTCAGC+AGG 0.495243 4:+72709122 None:intergenic
GGAGGAAGGTAACGTTCTTA+GGG 0.497743 4:-72709105 MsG0480022452.01.T01:CDS
TCCTCCTGCTGAGATGGAGC+CGG 0.501036 4:-72709126 MsG0480022452.01.T01:CDS
GTGGCAGGAGCTTCTTTCTG+AGG 0.503664 4:+72706546 None:intergenic
ACTAGACGAGAAGGAGAAAA+GGG 0.504571 4:-72707175 MsG0480022452.01.T01:CDS
ATGTAACATTTGAATTTCCA+AGG 0.506294 4:+72706340 None:intergenic
GTCCTCCAAGGCCCAAAGCC+AGG 0.509150 4:-72706800 MsG0480022452.01.T01:CDS
TTAGCAGGTGCAGGTGGAGG+AGG 0.510354 4:+72706704 None:intergenic
ATATCTGCCGCATCCTAGAA+AGG 0.513686 4:+72706765 None:intergenic
TGTATTCGGATTCAGCGATC+AGG 0.515580 4:-72709258 MsG0480022452.01.T01:CDS
ACCAAGGATGCTGCCAATAA+CGG 0.518485 4:-72706582 MsG0480022452.01.T01:CDS
CGTCGTCGCCGGCGGTGAAG+TGG 0.522107 4:+72709369 None:intergenic
GGCTCCATCTCAGCAGGAGG+AGG 0.522435 4:+72709128 None:intergenic
TCTTTAGCAGGTGCAGGTGG+AGG 0.524857 4:+72706701 None:intergenic
GACGACAACTATTCTGGATA+CGG 0.532542 4:-72709350 MsG0480022452.01.T01:CDS
CAAGGTTCAAAACAGAGAAA+GGG 0.537446 4:-72707067 MsG0480022452.01.T01:CDS
TTGGAAATTCAAATGTTACA+TGG 0.538799 4:-72706338 MsG0480022452.01.T01:three_prime_UTR
TCTCAATGTTGGCAACCTCA+CGG 0.539692 4:+72706867 None:intergenic
AAGGGAGACTGAGCGTAACT+CGG 0.540887 4:+72709233 None:intergenic
AAGGTAACGTTCTTAGGGAA+TGG 0.547512 4:-72709100 MsG0480022452.01.T01:CDS
CACCTGCTAAAGACTCCAAA+GGG 0.547927 4:-72706691 MsG0480022452.01.T01:CDS
AACGAAGACCACTTCACCGC+CGG 0.548831 4:-72709377 MsG0480022452.01.T01:CDS
GAGTCTTTAGCAGGTGCAGG+TGG 0.551285 4:+72706698 None:intergenic
TCGCTGAATCCGAATACATC+CGG 0.554031 4:+72709263 None:intergenic
TGCTATTCAACTAGACGAGA+AGG 0.554504 4:-72707184 MsG0480022452.01.T01:CDS
CTTCGAACCAGTGCATGTGA+TGG 0.556019 4:-72709213 MsG0480022452.01.T01:CDS
GTGGTCTTCGTTGACGGTGA+AGG 0.559914 4:+72709388 None:intergenic
GCCAACATTGAGAAGAAAAG+AGG 0.561154 4:-72706857 MsG0480022452.01.T01:CDS
AAAGATTATTGAGGAAGCTG+AGG 0.562392 4:-72707136 MsG0480022452.01.T01:CDS
TCCGGCTCCATCTCAGCAGG+AGG 0.569202 4:+72709125 None:intergenic
TTCGTTGACGGTGAAGGACA+TGG 0.571845 4:+72709394 None:intergenic
CATGTGATGGAAAACGGAAA+CGG 0.572497 4:-72709200 MsG0480022452.01.T01:CDS
ATCACATGCACTGGTTCGAA+GGG 0.575990 4:+72709215 None:intergenic
AGATCACACAACAGCAGCGC+CGG 0.576259 4:-72709291 MsG0480022452.01.T01:CDS
GCTGAGATGGAGCCGGAGGA+AGG 0.577970 4:-72709119 MsG0480022452.01.T01:CDS
TCCTGCTGAGATGGAGCCGG+AGG 0.580872 4:-72709123 MsG0480022452.01.T01:CDS
TCAGCAGGAGGAGGAAGCAC+CGG 0.587615 4:+72709137 None:intergenic
AAATTACTGGAAAGCAATTG+GGG 0.589625 4:-72706900 MsG0480022452.01.T01:CDS
CCTTGGAGGACAGTAACTGA+TGG 0.599991 4:+72706812 None:intergenic
CCACCGACCTTTCTAGGATG+CGG 0.602155 4:-72706772 MsG0480022452.01.T01:CDS
ATAGTTGTCGTCGTCGCCGG+CGG 0.604799 4:+72709361 None:intergenic
GGAGGAGGAATCATGTGAAG+TGG 0.606489 4:+72706719 None:intergenic
TGCTAAAGACTCCAAAGGGA+AGG 0.606563 4:-72706687 MsG0480022452.01.T01:CDS
CTGCCGCATCCTAGAAAGGT+CGG 0.609710 4:+72706769 None:intergenic
CGCATCCTAGAAAGGTCGGT+GGG 0.610689 4:+72706773 None:intergenic
TCAATGTTGGCAACCTCACG+GGG 0.611587 4:+72706869 None:intergenic
TCAAAACAGAGAAAGGGAGA+AGG 0.613489 4:-72707061 MsG0480022452.01.T01:intron
CCATCAGTTACTGTCCTCCA+AGG 0.615544 4:-72706812 MsG0480022452.01.T01:CDS
CCGCATCCTAGAAAGGTCGG+TGG 0.616621 4:+72706772 None:intergenic
TAAACCAAATGGATCAGCAC+CGG 0.618396 4:-72706624 MsG0480022452.01.T01:CDS
AAAGACTCCAAAGGGAAGGA+CGG 0.629704 4:-72706683 MsG0480022452.01.T01:CDS
GCACCTGCTAAAGACTCCAA+AGG 0.630783 4:-72706692 MsG0480022452.01.T01:CDS
CTGCTGTTGTGTGATCTACA+GGG 0.636206 4:+72709297 None:intergenic
GGAGGAATCATGTGAAGTGG+TGG 0.643969 4:+72706722 None:intergenic
GACAACTATTCTGGATACGG+CGG 0.653119 4:-72709347 MsG0480022452.01.T01:CDS
ACGTTCTTAGGGAATGGCGC+CGG 0.656812 4:-72709094 MsG0480022452.01.T01:intron
ATCTACAGGGACATCTTCGG+CGG 0.664893 4:+72709310 None:intergenic
TTAATGATTGAAATAAAATG+CGG 0.669839 4:+72706401 None:intergenic
GAAAGAAGCTCCTGCCACTG+AGG 0.676516 4:-72706541 MsG0480022452.01.T01:three_prime_UTR
TGCAGCAGACTGCTCCTCAG+TGG 0.680257 4:+72706527 None:intergenic
GAAAACGGAAACGGTTATGG+CGG 0.686022 4:-72709191 MsG0480022452.01.T01:CDS
TGGGGAGATAATTCCCCGTG+AGG 0.688947 4:-72706882 MsG0480022452.01.T01:CDS
TTGCACCTGAATCACAACCA+AGG 0.719598 4:-72706598 MsG0480022452.01.T01:CDS
GCTCAATGTTGAGACAAACA+AGG 0.723788 4:-72707085 MsG0480022452.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACAAATAGTATTTGTATTAA+TGG + Chr4:72708415-72708434 None:intergenic 15.0%
!! TAATAATTAAAAGTAGAGTA+AGG - Chr4:72708249-72708268 MsG0480022452.01.T01:intron 15.0%
!! TAATACAAATACTATTTGTT+TGG - Chr4:72708416-72708435 MsG0480022452.01.T01:intron 15.0%
!! TATAGTAAAAAATATAAGGA+AGG - Chr4:72707336-72707355 MsG0480022452.01.T01:intron 15.0%
!! TTAATGATTGAAATAAAATG+CGG + Chr4:72709363-72709382 None:intergenic 15.0%
!!! ATCTCTAAAAATTAAAAGAA+CGG + Chr4:72708777-72708796 None:intergenic 15.0%
!! AAAAAAAAGGTTAAAATGCA+GGG + Chr4:72709310-72709329 None:intergenic 20.0%
!! AACATTTATTGGATTTAATG+AGG - Chr4:72707243-72707262 MsG0480022452.01.T01:intron 20.0%
!! AATGAGATTAAAGATTATTG+AGG - Chr4:72708616-72708635 MsG0480022452.01.T01:intron 20.0%
!! ACATTTATTGGATTTAATGA+GGG - Chr4:72707244-72707263 MsG0480022452.01.T01:intron 20.0%
!! ATTCGTAAAAACATCAATAA+CGG - Chr4:72708205-72708224 MsG0480022452.01.T01:intron 20.0%
!! ATTGTCTTGAAAACATTTAT+TGG - Chr4:72707232-72707251 MsG0480022452.01.T01:intron 20.0%
!! TAAAAAATATAAGGAAGGAA+GGG - Chr4:72707341-72707360 MsG0480022452.01.T01:intron 20.0%
!! TAAAAAGTAAGTTCAGAATA+AGG - Chr4:72708080-72708099 MsG0480022452.01.T01:intron 20.0%
!! TTTATGTTAATTGTCTATGT+TGG - Chr4:72707431-72707450 MsG0480022452.01.T01:intron 20.0%
!!! GCATTTTATTTCAATCATTA+AGG - Chr4:72709362-72709381 MsG0480022452.01.T01:CDS 20.0%
!!! GTAAAAAGTAATGATAATGT+AGG + Chr4:72708739-72708758 None:intergenic 20.0%
!!! TAATTTTTTTCCTTCGAATT+TGG - Chr4:72707610-72707629 MsG0480022452.01.T01:intron 20.0%
! AAAAAAAGGTTAAAATGCAG+GGG + Chr4:72709309-72709328 None:intergenic 25.0%
! AAAAATTACTGGAAAGCAAT+TGG - Chr4:72708859-72708878 MsG0480022452.01.T01:intron 25.0%
! AAAATTACTGGAAAGCAATT+GGG - Chr4:72708860-72708879 MsG0480022452.01.T01:intron 25.0%
! AAAGTTTAAACTACCTAAGA+TGG + Chr4:72708169-72708188 None:intergenic 25.0%
! AAATACTTGTCCTACATTTA+AGG + Chr4:72708467-72708486 None:intergenic 25.0%
! AAATGGTTGATCTTTAAACA+TGG - Chr4:72708307-72708326 MsG0480022452.01.T01:intron 25.0%
! AACTAGAAGTCTAGAAATAA+AGG + Chr4:72707591-72707610 None:intergenic 25.0%
! AAGGTCATAATAGACAATAA+TGG + Chr4:72709405-72709424 None:intergenic 25.0%
! ACTAAAAGCTTGCAAAAAAA+AGG + Chr4:72709323-72709342 None:intergenic 25.0%
! ACTAGAAGTCTAGAAATAAA+GGG + Chr4:72707590-72707609 None:intergenic 25.0%
! AGATGGAATTAAGATATGTT+TGG - Chr4:72707949-72707968 MsG0480022452.01.T01:intron 25.0%
! AGTCCATCATATTAAATGAT+GGG - Chr4:72707887-72707906 MsG0480022452.01.T01:intron 25.0%
! ATGTAACATTTGAATTTCCA+AGG + Chr4:72709424-72709443 None:intergenic 25.0%
! ATTATTGTCTATTATGACCT+TGG - Chr4:72709404-72709423 MsG0480022452.01.T01:exon 25.0%
! CAAAAAAAAGGTTAAAATGC+AGG + Chr4:72709311-72709330 None:intergenic 25.0%
! GTAAAAAATATAAGGAAGGA+AGG - Chr4:72707340-72707359 MsG0480022452.01.T01:intron 25.0%
! TCTTAACCATCAAAAAAACT+TGG + Chr4:72706920-72706939 None:intergenic 25.0%
! TTATTCTGAACCTTAAATGT+AGG - Chr4:72708454-72708473 MsG0480022452.01.T01:intron 25.0%
! TTGGAAATTCAAATGTTACA+TGG - Chr4:72709423-72709442 MsG0480022452.01.T01:five_prime_UTR 25.0%
! TTTGTGAAAATTCTCTTGAT+TGG + Chr4:72708830-72708849 None:intergenic 25.0%
!! AATTTGGTTTCTTTATGTGA+TGG - Chr4:72707626-72707645 MsG0480022452.01.T01:intron 25.0%
!! ACAAAGTTTTCTATGAGAAA+AGG - Chr4:72708651-72708670 MsG0480022452.01.T01:intron 25.0%
!! ATGTTTTCTTTTGAATGCTT+AGG - Chr4:72706798-72706817 MsG0480022452.01.T01:CDS 25.0%
!! GATCTTAAATCTCTAAAGAT+CGG + Chr4:72708499-72708518 None:intergenic 25.0%
!!! TTTTTTTCTTCTTCCATCTT+AGG - Chr4:72708153-72708172 MsG0480022452.01.T01:intron 25.0%
AAACACGATATGCATATGTT+TGG + Chr4:72707413-72707432 None:intergenic 30.0%
AAATTACTGGAAAGCAATTG+GGG - Chr4:72708861-72708880 MsG0480022452.01.T01:intron 30.0%
AATATGTCTGTGGATCAATT+GGG - Chr4:72707100-72707119 MsG0480022452.01.T01:CDS 30.0%
AATGCTTAGGATTATGAATC+AGG - Chr4:72706811-72706830 MsG0480022452.01.T01:CDS 30.0%
ACTATTTGTTTGGTCATATG+AGG - Chr4:72708426-72708445 MsG0480022452.01.T01:intron 30.0%
ATGCTTAGGATTATGAATCA+GGG - Chr4:72706812-72706831 MsG0480022452.01.T01:CDS 30.0%
CAGTCCATCATATTAAATGA+TGG - Chr4:72707886-72707905 MsG0480022452.01.T01:intron 30.0%
CATAAAGAAACCAAATTCGA+AGG + Chr4:72707623-72707642 None:intergenic 30.0%
CTAGATCTAAGTTTAACAGA+CGG + Chr4:72707154-72707173 None:intergenic 30.0%
GAACATATGAGAAACATGTA+GGG - Chr4:72707272-72707291 MsG0480022452.01.T01:intron 30.0%
GAACATCATAAAACTACACA+AGG + Chr4:72707543-72707562 None:intergenic 30.0%
TCTCCCATCATTTAATATGA+TGG + Chr4:72707893-72707912 None:intergenic 30.0%
TGAACATATGAGAAACATGT+AGG - Chr4:72707271-72707290 MsG0480022452.01.T01:intron 30.0%
TGACTATTTACTATCTGACA+CGG + Chr4:72708059-72708078 None:intergenic 30.0%
TTAGAGATGAACTATGTTTG+TGG - Chr4:72708789-72708808 MsG0480022452.01.T01:intron 30.0%
! AAAATTGTTTTCTCACTACG+TGG + Chr4:72708378-72708397 None:intergenic 30.0%
! AAATTGTTTTCTCACTACGT+GGG + Chr4:72708377-72708396 None:intergenic 30.0%
! GTAGTGAGAAAACAATTTTC+TGG - Chr4:72708379-72708398 MsG0480022452.01.T01:intron 30.0%
! TCAAGAGAATTTTCACAAAG+AGG - Chr4:72708831-72708850 MsG0480022452.01.T01:intron 30.0%
! TCATTTTCGTAGGAAAAGTA+GGG - Chr4:72707658-72707677 MsG0480022452.01.T01:intron 30.0%
! TTCATTTTCGTAGGAAAAGT+AGG - Chr4:72707657-72707676 MsG0480022452.01.T01:intron 30.0%
!! ATAATGGATGAATATGTCTG+TGG - Chr4:72707090-72707109 MsG0480022452.01.T01:CDS 30.0%
!! TTTCTTTATGTGATGGATCA+TGG - Chr4:72707633-72707652 MsG0480022452.01.T01:intron 30.0%
!!! CTGAAACCAAGTTTTTTTGA+TGG - Chr4:72706911-72706930 MsG0480022452.01.T01:CDS 30.0%
!!! TCTACAGCTTTTTTAATCGA+TGG + Chr4:72707692-72707711 None:intergenic 30.0%
!!! TTGCAAGCTTTTAGTTTGTA+TGG - Chr4:72709328-72709347 MsG0480022452.01.T01:CDS 30.0%
AAAACAGATCCTACGAACTA+TGG + Chr4:72707046-72707065 None:intergenic 35.0%
AAAGATTATTGAGGAAGCTG+AGG - Chr4:72708625-72708644 MsG0480022452.01.T01:intron 35.0%
AAAGTTGTGCTTCAGTTGAA+AGG + Chr4:72707788-72707807 None:intergenic 35.0%
AAGAGGCTGACAAAAATTAC+TGG - Chr4:72708848-72708867 MsG0480022452.01.T01:intron 35.0%
AAGTTGTGCTTCAGTTGAAA+GGG + Chr4:72707787-72707806 None:intergenic 35.0%
AATAACGGTTGAGCAAATGA+AGG - Chr4:72708220-72708239 MsG0480022452.01.T01:intron 35.0%
ACAAGGTTCAAAACAGAGAA+AGG - Chr4:72708693-72708712 MsG0480022452.01.T01:intron 35.0%
AGGATTATGAATCAGGGATT+AGG - Chr4:72706818-72706837 MsG0480022452.01.T01:CDS 35.0%
AGTTTCTATCATGTGATTGG+AGG + Chr4:72707744-72707763 None:intergenic 35.0%
ATATGTCTGTGGATCAATTG+GGG - Chr4:72707101-72707120 MsG0480022452.01.T01:CDS 35.0%
ATGAACCAGAAGATCAAAGT+AGG - Chr4:72707924-72707943 MsG0480022452.01.T01:intron 35.0%
CAAGGTTCAAAACAGAGAAA+GGG - Chr4:72708694-72708713 MsG0480022452.01.T01:intron 35.0%
CAGTTCACTAAATCAGCATA+TGG + Chr4:72706952-72706971 None:intergenic 35.0%
CGTCTGTTAAACTTAGATCT+AGG - Chr4:72707152-72707171 MsG0480022452.01.T01:CDS 35.0%
GAAACAGCAACTAAACCAAA+TGG - Chr4:72709105-72709124 MsG0480022452.01.T01:CDS 35.0%
GAAGATCAAAGTAGGATAGA+TGG - Chr4:72707932-72707951 MsG0480022452.01.T01:intron 35.0%
GAATATGTCTGTGGATCAAT+TGG - Chr4:72707099-72707118 MsG0480022452.01.T01:CDS 35.0%
GTAAGGTCAAAGAAAGCAAT+AGG - Chr4:72708266-72708285 MsG0480022452.01.T01:intron 35.0%
GTTCATATTCCATAGTTCGT+AGG - Chr4:72707034-72707053 MsG0480022452.01.T01:intron 35.0%
GTTTGTGGAACAGTTATACT+TGG - Chr4:72708804-72708823 MsG0480022452.01.T01:intron 35.0%
TCAAACGAGATCTACATAGA+AGG + Chr4:72706708-72706727 None:intergenic 35.0%
TCTATCCTACTTTGATCTTC+TGG + Chr4:72707932-72707951 None:intergenic 35.0%
TGAATCTACAGTACCGTTAT+TGG + Chr4:72709195-72709214 None:intergenic 35.0%
TGAGAAGAAAAGAGGCAAAA+AGG - Chr4:72708912-72708931 MsG0480022452.01.T01:intron 35.0%
TGGAGTTTCTATCATGTGAT+TGG + Chr4:72707747-72707766 None:intergenic 35.0%
TGGTGTATGACAAGAAGTTA+TGG - Chr4:72708327-72708346 MsG0480022452.01.T01:intron 35.0%
TTGTCTATGTTGGCAAAACT+TGG - Chr4:72707441-72707460 MsG0480022452.01.T01:intron 35.0%
! GATCATGGATTCATTTTCGT+AGG - Chr4:72707648-72707667 MsG0480022452.01.T01:intron 35.0%
! GTTTATGCGGGTTGAAATAA+TGG - Chr4:72707074-72707093 MsG0480022452.01.T01:CDS 35.0%
! GTTTTGCATGCTTGTTTATG+CGG - Chr4:72707061-72707080 MsG0480022452.01.T01:intron 35.0%
! TTTTGCATGCTTGTTTATGC+GGG - Chr4:72707062-72707081 MsG0480022452.01.T01:CDS 35.0%
!! ATGCAGAGCTTATAGTTTTG+TGG + Chr4:72708018-72708037 None:intergenic 35.0%
AACTAGACGAGAAGGAGAAA+AGG - Chr4:72708585-72708604 MsG0480022452.01.T01:intron 40.0%
AAGGTAACGTTCTTAGGGAA+TGG - Chr4:72706661-72706680 MsG0480022452.01.T01:CDS 40.0%
ACCATTGTGAGTGCTTCTAA+CGG - Chr4:72707383-72707402 MsG0480022452.01.T01:intron 40.0%
ACGTGTTGCAACAATGAGAT+AGG + Chr4:72707565-72707584 None:intergenic 40.0%
ACTAGACGAGAAGGAGAAAA+GGG - Chr4:72708586-72708605 MsG0480022452.01.T01:intron 40.0%
ATGGAAAACGGAAACGGTTA+TGG - Chr4:72706567-72706586 MsG0480022452.01.T01:exon 40.0%
GAAAAGAGGCAAAAAGGATC+AGG - Chr4:72708918-72708937 MsG0480022452.01.T01:intron 40.0%
GACGACAACTATTCTGGATA+CGG - Chr4:72706411-72706430 MsG0480022452.01.T01:three_prime_UTR 40.0%
GCCAACATTGAGAAGAAAAG+AGG - Chr4:72708904-72708923 MsG0480022452.01.T01:intron 40.0%
GCTCAATGTTGAGACAAACA+AGG - Chr4:72708676-72708695 MsG0480022452.01.T01:intron 40.0%
TAAACCAAATGGATCAGCAC+CGG - Chr4:72709116-72709135 MsG0480022452.01.T01:CDS 40.0%
TCAAAACAGAGAAAGGGAGA+AGG - Chr4:72708700-72708719 MsG0480022452.01.T01:intron 40.0%
TGATTTAGTGAACTGTTGCG+TGG - Chr4:72706957-72706976 MsG0480022452.01.T01:intron 40.0%
TGCTATTCAACTAGACGAGA+AGG - Chr4:72708577-72708596 MsG0480022452.01.T01:intron 40.0%
TGGAATGCAAGTTTAGCAAG+AGG - Chr4:72707841-72707860 MsG0480022452.01.T01:intron 40.0%
! AAGGAATCTGAAACACTCAC+CGG + Chr4:72706689-72706708 None:intergenic 40.0%
! CATGTGATGGAAAACGGAAA+CGG - Chr4:72706561-72706580 MsG0480022452.01.T01:exon 40.0%
! GCCTCTTTTCTTCTCAATGT+TGG + Chr4:72708908-72708927 None:intergenic 40.0%
!!! GGGTTAGTTTTATGCTCTGT+TGG - Chr4:72706994-72707013 MsG0480022452.01.T01:intron 40.0%
AAAGACTCCAAAGGGAAGGA+CGG - Chr4:72709078-72709097 MsG0480022452.01.T01:intron 45.0%
ACCAAGGATGCTGCCAATAA+CGG - Chr4:72709179-72709198 MsG0480022452.01.T01:CDS 45.0%
ACTACGTGGGATTGACTACA+AGG + Chr4:72708364-72708383 None:intergenic 45.0%
AGCATCCTTGGTTGTGATTC+AGG + Chr4:72709171-72709190 None:intergenic 45.0%
ATATCTGCCGCATCCTAGAA+AGG + Chr4:72708999-72709018 None:intergenic 45.0%
CACCTGCTAAAGACTCCAAA+GGG - Chr4:72709070-72709089 MsG0480022452.01.T01:intron 45.0%
CTAAGAACGTTACCTTCCTC+CGG + Chr4:72706657-72706676 None:intergenic 45.0%
CTGCTGTTGTGTGATCTACA+GGG + Chr4:72706467-72706486 None:intergenic 45.0%
CTTCAGTTGAAAGGGAGATG+TGG + Chr4:72707779-72707798 None:intergenic 45.0%
GAAAACGGAAACGGTTATGG+CGG - Chr4:72706570-72706589 MsG0480022452.01.T01:exon 45.0%
GACAACTATTCTGGATACGG+CGG - Chr4:72706414-72706433 MsG0480022452.01.T01:three_prime_UTR 45.0%
GGAGGAAGGTAACGTTCTTA+GGG - Chr4:72706656-72706675 MsG0480022452.01.T01:CDS 45.0%
GGATCAGCACCTAAACCAAA+TGG - Chr4:72709126-72709145 MsG0480022452.01.T01:CDS 45.0%
GTGATCTACAGGGACATCTT+CGG + Chr4:72706457-72706476 None:intergenic 45.0%
GTTTGACAACAATGCAGCGT+AGG - Chr4:72707298-72707317 MsG0480022452.01.T01:intron 45.0%
TCGCTGAATCCGAATACATC+CGG + Chr4:72706501-72706520 None:intergenic 45.0%
TCTCAATGTTGGCAACCTCA+CGG + Chr4:72708897-72708916 None:intergenic 45.0%
TGCTAAAGACTCCAAAGGGA+AGG - Chr4:72709074-72709093 MsG0480022452.01.T01:intron 45.0%
TGCTCTGTTGGATTGCAGTT+TGG - Chr4:72707006-72707025 MsG0480022452.01.T01:intron 45.0%
TGTATTCGGATTCAGCGATC+AGG - Chr4:72706503-72706522 MsG0480022452.01.T01:three_prime_UTR 45.0%
TGTGATTCAGGTGCAACTTC+CGG + Chr4:72709159-72709178 None:intergenic 45.0%
TTGCACCTGAATCACAACCA+AGG - Chr4:72709163-72709182 MsG0480022452.01.T01:CDS 45.0%
! CCAGTGCATGTGATGGAAAA+CGG - Chr4:72706555-72706574 MsG0480022452.01.T01:exon 45.0%
! TTCTTTTCCGTCCTTCCCTT+TGG + Chr4:72709088-72709107 None:intergenic 45.0%
!! ACCGTTAGAAGCACTCACAA+TGG + Chr4:72707387-72707406 None:intergenic 45.0%
!! ATCACATGCACTGGTTCGAA+GGG + Chr4:72706549-72706568 None:intergenic 45.0%
!! GGTGCTGATCCATTTGGTTT+AGG + Chr4:72709117-72709136 None:intergenic 45.0%
!! GGTTTAGGTGCTGATCCATT+TGG + Chr4:72709123-72709142 None:intergenic 45.0%
!! TTCCCTTTGGAGTCTTTAGC+AGG + Chr4:72709075-72709094 None:intergenic 45.0%
!! AAAAATTAAAACAAAATATA+TGG - Chr4:72707821-72707840 MsG0480022452.01.T01:intron 5.0%
!! TAAATTATTAAGAATTTAAA+TGG - Chr4:72708290-72708309 MsG0480022452.01.T01:intron 5.0%
!! TATATATAGTAAAAAATATA+AGG - Chr4:72707332-72707351 MsG0480022452.01.T01:intron 5.0%
AAGGGAGACTGAGCGTAACT+CGG + Chr4:72706531-72706550 None:intergenic 50.0%
ACCGTTATTGGCAGCATCCT+TGG + Chr4:72709183-72709202 None:intergenic 50.0%
AGAATAGTTGTCGTCGTCGC+CGG + Chr4:72706406-72706425 None:intergenic 50.0%
ATCTACAGGGACATCTTCGG+CGG + Chr4:72706454-72706473 None:intergenic 50.0%
CCATCAGTTACTGTCCTCCA+AGG - Chr4:72708949-72708968 MsG0480022452.01.T01:intron 50.0%
CCGAATACATCCGGAGATTC+CGG + Chr4:72706492-72706511 None:intergenic 50.0%
CCGGAATCTCCGGATGTATT+CGG - Chr4:72706489-72706508 MsG0480022452.01.T01:three_prime_UTR 50.0%
CCTTGGAGGACAGTAACTGA+TGG + Chr4:72708952-72708971 None:intergenic 50.0%
CGGAGGAAGGTAACGTTCTT+AGG - Chr4:72706655-72706674 MsG0480022452.01.T01:CDS 50.0%
CTCAATGTTGGCAACCTCAC+GGG + Chr4:72708896-72708915 None:intergenic 50.0%
CTTCGAACCAGTGCATGTGA+TGG - Chr4:72706548-72706567 MsG0480022452.01.T01:three_prime_UTR 50.0%
GAGGTAGATCACAAGTCTCG+TGG - Chr4:72707860-72707879 MsG0480022452.01.T01:intron 50.0%
GCACCTGCTAAAGACTCCAA+AGG - Chr4:72709069-72709088 MsG0480022452.01.T01:intron 50.0%
GCTGCTGTTGTGTGATCTAC+AGG + Chr4:72706468-72706487 None:intergenic 50.0%
GGAGGAATCATGTGAAGTGG+TGG + Chr4:72709042-72709061 None:intergenic 50.0%
GGAGGAGGAATCATGTGAAG+TGG + Chr4:72709045-72709064 None:intergenic 50.0%
GGGAGATGTGGTGCAATTGT+TGG + Chr4:72707767-72707786 None:intergenic 50.0%
GGTGAAGTGGTCTTCGTTGA+CGG + Chr4:72706382-72706401 None:intergenic 50.0%
TCAATGTTGGCAACCTCACG+GGG + Chr4:72708895-72708914 None:intergenic 50.0%
TTCGTTGACGGTGAAGGACA+TGG + Chr4:72706370-72706389 None:intergenic 50.0%
TTGGAGTCTTTAGCAGGTGC+AGG + Chr4:72709069-72709088 None:intergenic 50.0%
! CCGTTTTCCATCACATGCAC+TGG + Chr4:72706558-72706577 None:intergenic 50.0%
! CGTTTTTGTCTCCGATGGTC+CGG - Chr4:72706605-72706624 MsG0480022452.01.T01:CDS 50.0%
! GACGACGTTTTTGTCTCCGA+TGG - Chr4:72706600-72706619 MsG0480022452.01.T01:CDS 50.0%
!! ACTTCCGGTGCTGATCCATT+TGG + Chr4:72709144-72709163 None:intergenic 50.0%
!! CATCACATGCACTGGTTCGA+AGG + Chr4:72706550-72706569 None:intergenic 50.0%
AACGAAGACCACTTCACCGC+CGG - Chr4:72706384-72706403 MsG0480022452.01.T01:three_prime_UTR 55.0%
ACGTTCTTAGGGAATGGCGC+CGG - Chr4:72706667-72706686 MsG0480022452.01.T01:CDS 55.0%
AGATCACACAACAGCAGCGC+CGG - Chr4:72706470-72706489 MsG0480022452.01.T01:three_prime_UTR 55.0%
CGCATCCTAGAAAGGTCGGT+GGG + Chr4:72708991-72709010 None:intergenic 55.0%
CTGCCGCATCCTAGAAAGGT+CGG + Chr4:72708995-72709014 None:intergenic 55.0%
GAAAGAAGCTCCTGCCACTG+AGG - Chr4:72709220-72709239 MsG0480022452.01.T01:CDS 55.0%
GAGTCTTTAGCAGGTGCAGG+TGG + Chr4:72709066-72709085 None:intergenic 55.0%
GCAAACCCACCGACCTTTCT+AGG - Chr4:72708983-72709002 MsG0480022452.01.T01:intron 55.0%
GGCGACGACGACAACTATTC+TGG - Chr4:72706405-72706424 MsG0480022452.01.T01:three_prime_UTR 55.0%
GTGGCAGGAGCTTCTTTCTG+AGG + Chr4:72709218-72709237 None:intergenic 55.0%
GTGGTCTTCGTTGACGGTGA+AGG + Chr4:72706376-72706395 None:intergenic 55.0%
TCTTTAGCAGGTGCAGGTGG+AGG + Chr4:72709063-72709082 None:intergenic 55.0%
TGGGGAGATAATTCCCCGTG+AGG - Chr4:72708879-72708898 MsG0480022452.01.T01:intron 55.0%
!! CCACCGACCTTTCTAGGATG+CGG - Chr4:72708989-72709008 MsG0480022452.01.T01:intron 55.0%
!! GCGTGGTGACGAGCTTTTGA+GGG - Chr4:72706974-72706993 MsG0480022452.01.T01:intron 55.0%
!! TGCGTGGTGACGAGCTTTTG+AGG - Chr4:72706973-72706992 MsG0480022452.01.T01:intron 55.0%
ATAGTTGTCGTCGTCGCCGG+CGG + Chr4:72706403-72706422 None:intergenic 60.0%
CCGCATCCTAGAAAGGTCGG+TGG + Chr4:72708992-72709011 None:intergenic 60.0%
GCTTCCTCCTCCTGCTGAGA+TGG - Chr4:72706629-72706648 MsG0480022452.01.T01:CDS 60.0%
TCCTCCTGCTGAGATGGAGC+CGG - Chr4:72706635-72706654 MsG0480022452.01.T01:CDS 60.0%
TGCAGCAGACTGCTCCTCAG+TGG + Chr4:72709237-72709256 None:intergenic 60.0%
TTAGCAGGTGCAGGTGGAGG+AGG + Chr4:72709060-72709079 None:intergenic 60.0%
! AACAGCAGCGCCGGAATCTC+CGG - Chr4:72706479-72706498 MsG0480022452.01.T01:three_prime_UTR 60.0%
! CGGTGGGTTTGCCTGGCTTT+GGG + Chr4:72708975-72708994 None:intergenic 60.0%
! GAAAGGTCGGTGGGTTTGCC+TGG + Chr4:72708982-72709001 None:intergenic 60.0%
! TCAGCAGGAGGAGGAAGCAC+CGG + Chr4:72706627-72706646 None:intergenic 60.0%
! TCGGTGGGTTTGCCTGGCTT+TGG + Chr4:72708976-72708995 None:intergenic 60.0%
!! AGGAGGAAGCACCGGACCAT+CGG + Chr4:72706619-72706638 None:intergenic 60.0%
!! GTTTGCCTGGCTTTGGGCCT+TGG + Chr4:72708969-72708988 None:intergenic 60.0%
GCAGACTGCTCCTCAGTGGC+AGG + Chr4:72709233-72709252 None:intergenic 65.0%
GCTGAGATGGAGCCGGAGGA+AGG - Chr4:72706642-72706661 MsG0480022452.01.T01:CDS 65.0%
GGCTCCATCTCAGCAGGAGG+AGG + Chr4:72706636-72706655 None:intergenic 65.0%
GTCCTCCAAGGCCCAAAGCC+AGG - Chr4:72708961-72708980 MsG0480022452.01.T01:intron 65.0%
TCCGGCTCCATCTCAGCAGG+AGG + Chr4:72706639-72706658 None:intergenic 65.0%
TCCTCCGGCTCCATCTCAGC+AGG + Chr4:72706642-72706661 None:intergenic 65.0%
TCCTGCTGAGATGGAGCCGG+AGG - Chr4:72706638-72706657 MsG0480022452.01.T01:CDS 65.0%
!! TGCCTGGCTTTGGGCCTTGG+AGG + Chr4:72708966-72708985 None:intergenic 65.0%
CGTCGTCGCCGGCGGTGAAG+TGG + Chr4:72706395-72706414 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
Chr4 gene 72706293 72709490 72706293 ID=MsG0480022452.01;Name=MsG0480022452.01
Chr4 mRNA 72706293 72709490 72706293 ID=MsG0480022452.01.T01;Parent=MsG0480022452.01;Name=MsG0480022452.01.T01;_AED=0.31;_eAED=0.31;_QI=76|1|1|1|1|1|3|281|287
Chr4 exon 72706293 72706966 72706293 ID=MsG0480022452.01.T01:exon:5322;Parent=MsG0480022452.01.T01
Chr4 exon 72707062 72707212 72707062 ID=MsG0480022452.01.T01:exon:5321;Parent=MsG0480022452.01.T01
Chr4 exon 72709095 72709490 72709095 ID=MsG0480022452.01.T01:exon:5320;Parent=MsG0480022452.01.T01
Chr4 five_prime_UTR 72709415 72709490 72709415 ID=MsG0480022452.01.T01:five_prime_utr;Parent=MsG0480022452.01.T01
Chr4 CDS 72709095 72709414 72709095 ID=MsG0480022452.01.T01:cds;Parent=MsG0480022452.01.T01
Chr4 CDS 72707062 72707212 72707062 ID=MsG0480022452.01.T01:cds;Parent=MsG0480022452.01.T01
Chr4 CDS 72706574 72706966 72706574 ID=MsG0480022452.01.T01:cds;Parent=MsG0480022452.01.T01
Chr4 three_prime_UTR 72706293 72706573 72706293 ID=MsG0480022452.01.T01:three_prime_utr;Parent=MsG0480022452.01.T01
Gene Sequence

>MsG0480022452.01.T01

ATGTCCTTCACCGTCAACGAAGACCACTTCACCGCCGGCGACGACGACAACTATTCTGGATACGGCGGATTCTCAAGCTACTCCGCCGAAGATGTCCCTGTAGATCACACAACAGCAGCGCCGGAATCTCCGGATGTATTCGGATTCAGCGATCAGGATCCGAGTTACGCTCAGTCTCCCTTCGAACCAGTGCATGTGATGGAAAACGGAAACGGTTATGGCGGTCACGATGACGACGTTTTTGTCTCCGATGGTCCGGTGCTTCCTCCTCCTGCTGAGATGGAGCCGGAGGAAGGTAACGTTCTTAGGGAATGGCGCCGTCAAAATGCTATTCAACTAGACGAGAAGGAGAAAAGGGAAAAAGAAATGAGATTAAAGATTATTGAGGAAGCTGAGGATTACAAAGTTTTCTATGAGAAAAGGAAGCTCAATGTTGAGACAAACAAGGTTCAAAACAGAGAAAGGGAGAAGTTATACTTGGCCAATCAAGAGAATTTTCACAAAGAGGCTGACAAAAATTACTGGAAAGCAATTGGGGAGATAATTCCCCGTGAGGTTGCCAACATTGAGAAGAAAAGAGGCAAAAAGGATCAGGATAAGAATCCATCAGTTACTGTCCTCCAAGGCCCAAAGCCAGGCAAACCCACCGACCTTTCTAGGATGCGGCAGATATTGTTAAAGCTGAAACATACACCACCACTTCACATGATTCCTCCTCCACCTGCACCTGCTAAAGACTCCAAAGGGAAGGACGGAAAAGAAACAGCAACTAAACCAAATGGATCAGCACCTAAACCAAATGGATCAGCACCGGAAGTTGCACCTGAATCACAACCAAGGATGCTGCCAATAACGGTACTGTAG
Protein sequence

>MsG0480022452.01.T01

MSFTVNEDHFTAGDDDNYSGYGGFSSYSAEDVPVDHTTAAPESPDVFGFSDQDPSYAQSPFEPVHVMENGNGYGGHDDDVFVSDGPVLPPPAEMEPEEGNVLREWRRQNAIQLDEKEKREKEMRLKIIEEAEDYKVFYEKRKLNVETNKVQNREREKLYLANQENFHKEADKNYWKAIGEIIPREVANIEKKRGKKDQDKNPSVTVLQGPKPGKPTDLSRMRQILLKLKHTPPLHMIPPPPAPAKDSKGKDGKETATKPNGSAPKPNGSAPEVAPESQPRMLPITVL*