AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0780035919.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780035919.01.T01 MTR_7g005380 99.281 278 2 0 2 279 84 361 0.0 567
MsG0780035919.01.T01 MTR_3g076630 39.098 266 158 1 5 270 142 403 2.49e-65 209
MsG0780035919.01.T01 MTR_4g021470 36.842 266 162 3 2 266 93 353 4.54e-52 174
MsG0780035919.01.T01 MTR_7g009250 76.531 98 14 2 76 164 16 113 4.20e-42 140
MsG0780035919.01.T01 MTR_7g009250 56.140 57 25 0 1 57 5 61 4.63e-12 62.0
MsG0780035919.01.T01 MTR_7g009290 66.667 69 20 1 50 118 9 74 1.97e-23 91.7
MsG0780035919.01.T01 MTR_7g009310 95.122 41 2 0 78 118 6 46 5.18e-23 90.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780035919.01.T01 AT5G50850 92.251 271 21 0 2 272 92 362 0.0 518
MsG0780035919.01.T01 AT2G34590 40.299 268 152 2 5 270 145 406 8.70e-65 208
MsG0780035919.01.T01 AT1G30120 39.474 266 157 1 5 270 145 406 1.31e-64 208
MsG0780035919.01.T01 AT1G55510 36.842 266 162 3 2 266 87 347 1.73e-52 175
MsG0780035919.01.T01 AT3G13450 34.962 266 167 3 2 266 93 353 1.12e-49 168

Find 86 sgRNAs with CRISPR-Local

Find 241 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCACAAAGGTTATTAATTTA+AGG 0.162693 7:-82602 MsG0780035919.01.T01:intron
TTTATAATTCCCAGCATATC+TGG 0.227146 7:-81982 MsG0780035919.01.T01:three_prime_UTR
TCATGTCTTGGTTAGTTCTT+TGG 0.228149 7:-82169 MsG0780035919.01.T01:three_prime_UTR
AATATGCAGGCTGGGTTTAC+TGG 0.232671 7:-85476 MsG0780035919.01.T01:CDS
ATGCCCTGGGTTGAAAGTTT+TGG 0.247026 7:-83452 MsG0780035919.01.T01:CDS
AGAACTAGATCGATTAATTT+AGG 0.262380 7:+82200 None:intergenic
GTTTACTTAAAGCTGCTATA+AGG 0.289090 7:-83402 MsG0780035919.01.T01:CDS
TCTTGGTATGGCTCATGCCC+TGG 0.309803 7:-83466 MsG0780035919.01.T01:CDS
GGAGTTGGTGCTGCTTACTA+TGG 0.330288 7:-85449 MsG0780035919.01.T01:CDS
CATGCCTTATGCAGCAAATC+TGG 0.332687 7:-82397 MsG0780035919.01.T01:CDS
TCAAGAACTTCGGCAGAAAC+AGG 0.334442 7:+83214 None:intergenic
AATGGTTGGCTTTGCTCTAA+AGG 0.349744 7:-83007 MsG0780035919.01.T01:intron
TCATTGATTCTGTCAGGCTT+TGG 0.355325 7:-82076 MsG0780035919.01.T01:three_prime_UTR
TCAAGGAAAACTACAGGATC+AGG 0.356678 7:+83376 None:intergenic
CTTTCCAGATTTGCTGCATA+AGG 0.357769 7:+82393 None:intergenic
CAGGCTGGGTTTACTGGGAT+TGG 0.358479 7:-85470 MsG0780035919.01.T01:CDS
TCCGATGGGAAGGCAGAAAC+TGG 0.372273 7:+83189 None:intergenic
AATGTACCTATTGTATTTAG+AGG 0.374366 7:-83690 MsG0780035919.01.T01:CDS
GCACCGGTGGAGAGAATTGC+CGG 0.381050 7:-82432 MsG0780035919.01.T01:CDS
GGGTTTACTGGGATTGGAGT+TGG 0.388394 7:-85464 MsG0780035919.01.T01:CDS
CGAGCATCTTCAGATGAATA+TGG 0.394225 7:+83427 None:intergenic
TGCAGCAAATCTGGAAAGAT+TGG 0.409248 7:-82388 MsG0780035919.01.T01:CDS
TTATGCAGTGTTATGCATCT+TGG 0.410920 7:-83483 MsG0780035919.01.T01:intron
AATGGTGCTGCTGCTGGTGT+TGG 0.415359 7:-83663 MsG0780035919.01.T01:CDS
TCTGTCATCGAGGAGAGTTT+TGG 0.424908 7:-82465 MsG0780035919.01.T01:CDS
TTTCCTGACAGAAGCATTGA+TGG 0.431540 7:+82554 None:intergenic
AAATCAAATTACATGTCTGC+TGG 0.434500 7:-83720 MsG0780035919.01.T01:CDS
TTTACTTAAAGCTGCTATAA+GGG 0.435542 7:-83401 MsG0780035919.01.T01:CDS
GAACATCCTCCCAGATATGC+TGG 0.451781 7:+81972 None:intergenic
TTGGGTCCTCTAAATACAAT+AGG 0.453035 7:+83684 None:intergenic
GGACCCAATGGTGCTGCTGC+TGG 0.458395 7:-83669 MsG0780035919.01.T01:CDS
TTCAACTGTCACCAGTCTGT+TGG 0.461416 7:+82530 None:intergenic
CTTGGTATGGCTCATGCCCT+GGG 0.468165 7:-83465 MsG0780035919.01.T01:CDS
AGGTTGTGGTGGAAATTTGA+GGG 0.475922 7:+82119 None:intergenic
TGTTCATTAAATATGCAGGC+TGG 0.476600 7:-85485 None:intergenic
AATGTCATAAACTCCACAAC+AGG 0.479865 7:+85419 None:intergenic
ATATGCAGGCTGGGTTTACT+GGG 0.487916 7:-85475 MsG0780035919.01.T01:CDS
CAGATTTGCTGCATAAGGCA+TGG 0.501282 7:+82398 None:intergenic
GACATTTAACTTCTCCATGC+AGG 0.502562 7:-85402 MsG0780035919.01.T01:intron
CAGTGTTATGCATCTTGGTA+TGG 0.510583 7:-83478 MsG0780035919.01.T01:CDS
ACACCAGCAGCAGCACCATT+GGG 0.513248 7:+83666 None:intergenic
GCCCCGGCAATTCTCTCCAC+CGG 0.513647 7:+82429 None:intergenic
CCACCATCAATGCTTCTGTC+AGG 0.514146 7:-82557 MsG0780035919.01.T01:CDS
ATGCCACAGATCTGTGCCTA+TGG 0.514735 7:-82232 MsG0780035919.01.T01:CDS
CTTAACAGATTGAGAGAGAA+GGG 0.517313 7:-83059 MsG0780035919.01.T01:intron
ATTTAGGCAGTTGCAGCCAT+AGG 0.522619 7:+82216 None:intergenic
CACCGGTGGAGAGAATTGCC+GGG 0.523558 7:-82431 MsG0780035919.01.T01:CDS
TTATAATTCCCAGCATATCT+GGG 0.527240 7:-81981 MsG0780035919.01.T01:three_prime_UTR
AACACCAGCAGCAGCACCAT+TGG 0.529263 7:+83665 None:intergenic
GTTCATTAAATATGCAGGCT+GGG 0.536284 7:-85484 None:intergenic
AGATTTGCTGCATAAGGCAT+GGG 0.544500 7:+82399 None:intergenic
TCCAGTTTCTGCCTTCCCAT+CGG 0.546005 7:-83190 MsG0780035919.01.T01:CDS
GGGTTTCCTCAGCATGGTGT+TGG 0.548315 7:-82504 MsG0780035919.01.T01:CDS
GGAAAGATTGGCTGTCCCAC+AGG 0.549518 7:-82376 MsG0780035919.01.T01:intron
AGACTGGTGACAGTTGAAGA+AGG 0.558832 7:-82525 MsG0780035919.01.T01:CDS
GCTTAACAGATTGAGAGAGA+AGG 0.566225 7:-83060 MsG0780035919.01.T01:intron
AATCAAATTACATGTCTGCT+GGG 0.569255 7:-83719 MsG0780035919.01.T01:CDS
GAGGTTGTGGTGGAAATTTG+AGG 0.570350 7:+82118 None:intergenic
CTATGGTCTAAAGCCTGTTG+TGG 0.572678 7:-85432 MsG0780035919.01.T01:CDS
AACATCCTCCCAGATATGCT+GGG 0.589448 7:+81973 None:intergenic
CAAGAACTTCGGCAGAAACA+GGG 0.590845 7:+83215 None:intergenic
GAAACTGGAATCAAGAACTT+CGG 0.593707 7:+83204 None:intergenic
CCTGACAGAAGCATTGATGG+TGG 0.602274 7:+82557 None:intergenic
GTGCCAAAACTTTCAACCCA+GGG 0.603446 7:+83449 None:intergenic
CAAGGAAAACTACAGGATCA+GGG 0.604349 7:+83377 None:intergenic
GACTGGTGACAGTTGAAGAA+GGG 0.606152 7:-82524 MsG0780035919.01.T01:CDS
GAGATAAACACTAACCTGCA+TGG 0.607390 7:+85388 None:intergenic
TGTCAGGAAAACCAACAGAC+TGG 0.614276 7:-82541 MsG0780035919.01.T01:CDS
CAGCCATAGGCACAGATCTG+TGG 0.618473 7:+82229 None:intergenic
AGGCATGGGAACATCAGCCC+CGG 0.619316 7:+82413 None:intergenic
ATTGTATTTAGAGGACCCAA+TGG 0.620504 7:-83681 MsG0780035919.01.T01:CDS
GAAGAAGGGTTTCCTCAGCA+TGG 0.620750 7:-82510 MsG0780035919.01.T01:CDS
GGTGCCAAAACTTTCAACCC+AGG 0.622618 7:+83448 None:intergenic
CCTTCCCATCGGAAAAGCAA+AGG 0.627357 7:-83179 MsG0780035919.01.T01:intron
GCTGAGACACTAGCAAAGGA+AGG 0.630656 7:-82724 MsG0780035919.01.T01:CDS
GGCTGCTGAGACACTAGCAA+AGG 0.630698 7:-82728 MsG0780035919.01.T01:CDS
TTGATGGTGGCTCGATCAAG+CGG 0.636023 7:+82570 None:intergenic
TGGTGGCTCGATCAAGCGGT+CGG 0.637314 7:+82574 None:intergenic
TGGCTATCTTGATGCACCGG+TGG 0.641507 7:-82445 MsG0780035919.01.T01:CDS
ACCGGTGGAGAGAATTGCCG+GGG 0.643645 7:-82430 MsG0780035919.01.T01:CDS
TATTCATCTGAAGATGCTCG+TGG 0.654209 7:-83424 MsG0780035919.01.T01:CDS
AAAGGAAGGAATCAGTGCTG+AGG 0.656553 7:-82710 MsG0780035919.01.T01:intron
TGATAACAATGACACAAGAG+AGG 0.681703 7:-81932 MsG0780035919.01.T01:three_prime_UTR
TCAGCGCCAACACCATGCTG+AGG 0.686283 7:+82498 None:intergenic
TAATTCCCAGCATATCTGGG+AGG 0.718916 7:-81978 MsG0780035919.01.T01:three_prime_UTR
AATCTGTGCATCTGTCATCG+AGG 0.746298 7:-82475 MsG0780035919.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AACTTTTTTTTACTTTGTTT+AGG - Chr7:84578-84597 MsG0780035919.01.T01:intron 15.0%
!!! AATTATTTTTGGTAACATAA+AGG + Chr7:85188-85207 None:intergenic 15.0%
!!! ATTATTTTTGGTAACATAAA+GGG + Chr7:85187-85206 None:intergenic 15.0%
!!! TGTTTTAAATTTTGATATTC+AGG - Chr7:83218-83237 MsG0780035919.01.T01:CDS 15.0%
!!! TTATATATTTGAAGTAAAGT+TGG - Chr7:84510-84529 MsG0780035919.01.T01:intron 15.0%
!! AAGATGACATAATGATAAAA+TGG + Chr7:83543-83562 None:intergenic 20.0%
!! AGATGACATAATGATAAAAT+GGG + Chr7:83542-83561 None:intergenic 20.0%
!! CTTAAATTAATAACCTTTGT+GGG + Chr7:84727-84746 None:intergenic 20.0%
!! GCAACAATAAAATTAAACAA+TGG - Chr7:82701-82720 MsG0780035919.01.T01:intron 20.0%
!! TAAAACAAATAGAATTGACA+AGG + Chr7:83205-83224 None:intergenic 20.0%
!! TAAAATTAATTGTGTGAAGT+CGG - Chr7:83431-83450 MsG0780035919.01.T01:CDS 20.0%
!! TGTATAATCATCATAAATTC+AGG - Chr7:82430-82449 MsG0780035919.01.T01:CDS 20.0%
!! TTTCTTAAATATCACTTCTA+AGG - Chr7:84979-84998 MsG0780035919.01.T01:intron 20.0%
!!! AAAAGAGGACTATAATTTTT+TGG - Chr7:84476-84495 MsG0780035919.01.T01:intron 20.0%
!!! AAATTTGAGGGAATTATTTT+TGG + Chr7:85199-85218 None:intergenic 20.0%
!!! AATAAAAGTGTCAAATTAGA+AGG - Chr7:82519-82538 MsG0780035919.01.T01:CDS 20.0%
!!! ATTGATAAAAATCGCTTTTA+GGG + Chr7:83340-83359 None:intergenic 20.0%
!!! CTAATTTGACACTTTTATTT+AGG + Chr7:82518-82537 None:intergenic 20.0%
!!! TGTGTTAATTTTACATCTTT+TGG - Chr7:81998-82017 MsG0780035919.01.T01:three_prime_UTR 20.0%
! AAAATGGGATGAAATAGATA+GGG + Chr7:83527-83546 None:intergenic 25.0%
! AAAATTAATTGTGTGAAGTC+GGG - Chr7:83432-83451 MsG0780035919.01.T01:CDS 25.0%
! AAACAATAACAGAAGAAAAG+AGG - Chr7:84461-84480 MsG0780035919.01.T01:intron 25.0%
! AATGTACCTATTGTATTTAG+AGG - Chr7:83637-83656 MsG0780035919.01.T01:intron 25.0%
! AGAACTAGATCGATTAATTT+AGG + Chr7:85130-85149 None:intergenic 25.0%
! ATAAATCATCACCAATTATG+TGG - Chr7:83095-83114 MsG0780035919.01.T01:intron 25.0%
! ATCATCACCAATTAATTATG+TGG - Chr7:83040-83059 MsG0780035919.01.T01:CDS 25.0%
! ATTTAAGAAACATTACCTGT+GGG + Chr7:84969-84988 None:intergenic 25.0%
! CCACAAAGGTTATTAATTTA+AGG - Chr7:84725-84744 MsG0780035919.01.T01:intron 25.0%
! CCTTAAATTAATAACCTTTG+TGG + Chr7:84728-84747 None:intergenic 25.0%
! CTAAACACCACATAATTAAT+TGG + Chr7:83050-83069 None:intergenic 25.0%
! GACACTAAAAAATACAAGAA+AGG + Chr7:84206-84225 None:intergenic 25.0%
! TAAAAAATACAAGAAAGGAC+TGG + Chr7:84201-84220 None:intergenic 25.0%
! TAAAATGGGATGAAATAGAT+AGG + Chr7:83528-83547 None:intergenic 25.0%
! TAAGCAAACTAATCATCATT+TGG + Chr7:82191-82210 None:intergenic 25.0%
! TAGAATACAAAACGATCTTA+GGG + Chr7:84354-84373 None:intergenic 25.0%
! TAGGGTGTGATTATTAATAT+GGG + Chr7:83322-83341 None:intergenic 25.0%
! TATTTAAGAAACATTACCTG+TGG + Chr7:84970-84989 None:intergenic 25.0%
! TTAGGGTGTGATTATTAATA+TGG + Chr7:83323-83342 None:intergenic 25.0%
! TTCTCGATATAAAATATTCG+AGG + Chr7:82275-82294 None:intergenic 25.0%
! TTTACTTAAAGCTGCTATAA+GGG - Chr7:83926-83945 MsG0780035919.01.T01:intron 25.0%
!! AATCTGTAGTTTGTATCTTT+AGG + Chr7:82942-82961 None:intergenic 25.0%
!!! AAAGTTTTTTCGTGAAAAGT+TGG - Chr7:82085-82104 MsG0780035919.01.T01:three_prime_UTR 25.0%
!!! AAATGATGATTAGTTTGCTT+AGG - Chr7:82190-82209 MsG0780035919.01.T01:three_prime_UTR 25.0%
!!! ATGTTTTTTTTTACCCACAA+AGG - Chr7:84711-84730 MsG0780035919.01.T01:intron 25.0%
!!! CATTGATAAAAATCGCTTTT+AGG + Chr7:83341-83360 None:intergenic 25.0%
!!! TTCTGAAATTTTTCATGTCT+TGG - Chr7:85146-85165 MsG0780035919.01.T01:intron 25.0%
AAATCAAATTACATGTCTGC+TGG - Chr7:83607-83626 MsG0780035919.01.T01:intron 30.0%
AAATTAGAAGGATAGTGATG+TGG - Chr7:82531-82550 MsG0780035919.01.T01:CDS 30.0%
AATCAAATTACATGTCTGCT+GGG - Chr7:83608-83627 MsG0780035919.01.T01:intron 30.0%
AGATACAAACTACAGATTTG+TGG - Chr7:82944-82963 MsG0780035919.01.T01:intron 30.0%
ATTGACAAGGAATGATATTC+CGG + Chr7:83192-83211 None:intergenic 30.0%
CATAACGAAAGAAAAACAGT+GGG + Chr7:83764-83783 None:intergenic 30.0%
CTAATCATCATTTGGAAACT+CGG + Chr7:82183-82202 None:intergenic 30.0%
CTAGAATACAAAACGATCTT+AGG + Chr7:84355-84374 None:intergenic 30.0%
GTTTACTTAAAGCTGCTATA+AGG - Chr7:83925-83944 MsG0780035919.01.T01:intron 30.0%
GTTTCATAGAAGAAAATGTC+AGG + Chr7:83716-83735 None:intergenic 30.0%
TATTACAGCCTTCTCAAAAA+TGG - Chr7:84302-84321 MsG0780035919.01.T01:intron 30.0%
TATTCTTATCACACAGAAGA+CGG + Chr7:82146-82165 None:intergenic 30.0%
TCATAACGAAAGAAAAACAG+TGG + Chr7:83765-83784 None:intergenic 30.0%
TTATAATTCCCAGCATATCT+GGG - Chr7:85346-85365 MsG0780035919.01.T01:intron 30.0%
TTATTAATATGGGTATGCAC+AGG + Chr7:83312-83331 None:intergenic 30.0%
TTATTGCAAATGTGTTTGCT+TGG + Chr7:84560-84579 None:intergenic 30.0%
TTGCACACTGAATTTAAGAA+AGG + Chr7:81973-81992 None:intergenic 30.0%
TTTATAATTCCCAGCATATC+TGG - Chr7:85345-85364 MsG0780035919.01.T01:intron 30.0%
! CTAAGATCGTTTTGTATTCT+AGG - Chr7:84353-84372 MsG0780035919.01.T01:intron 30.0%
! CTTACAGTAACTCATTTTCA+AGG + Chr7:83971-83990 None:intergenic 30.0%
! TGTAGTTTGTATCTTTAGGA+GGG + Chr7:82938-82957 None:intergenic 30.0%
! TTAAAGCATTTCTGTATGCA+TGG - Chr7:82873-82892 MsG0780035919.01.T01:intron 30.0%
!! TCATTTTCAAGGAAAACTAC+AGG + Chr7:83960-83979 None:intergenic 30.0%
!!! GTAAAACCACTTTTTGTATG+AGG + Chr7:85231-85250 None:intergenic 30.0%
!!! GTTTGTTGGTATTTTTTTGC+CGG - Chr7:83170-83189 MsG0780035919.01.T01:intron 30.0%
!!! TGGTTAGTTTTATAGTCACA+TGG - Chr7:83122-83141 MsG0780035919.01.T01:intron 30.0%
!!! TTTTACTCATTGATTCTGTC+AGG - Chr7:85245-85264 MsG0780035919.01.T01:intron 30.0%
AAAAACAGAAGTTGACCACT+AGG + Chr7:85436-85455 None:intergenic 35.0%
AACCAAACACAGAGAAATCA+TGG + Chr7:82028-82047 None:intergenic 35.0%
AAGAATGATGTCTTTCACTC+TGG + Chr7:82377-82396 None:intergenic 35.0%
AAGGATTTGAAGATTCTGAG+GGG + Chr7:82616-82635 None:intergenic 35.0%
AATCAATCACGGGATTACAT+GGG + Chr7:82914-82933 None:intergenic 35.0%
AATGTCATAAACTCCACAAC+AGG + Chr7:81911-81930 None:intergenic 35.0%
ACCAAACACAGAGAAATCAT+GGG + Chr7:82027-82046 None:intergenic 35.0%
ACTGAAGTATATGTGCTCAA+TGG + Chr7:83789-83808 None:intergenic 35.0%
ACTGCATAAAAGCAAAGTTG+TGG + Chr7:83833-83852 None:intergenic 35.0%
AGAATGATGTCTTTCACTCT+GGG + Chr7:82376-82395 None:intergenic 35.0%
ATCACCAATTATGTGGTGTT+TGG - Chr7:83102-83121 MsG0780035919.01.T01:intron 35.0%
ATTGTATTTAGAGGACCCAA+TGG - Chr7:83646-83665 MsG0780035919.01.T01:intron 35.0%
ATTTCTGTATGCATGGTGAA+AGG - Chr7:82880-82899 MsG0780035919.01.T01:intron 35.0%
CAAGGATTTGAAGATTCTGA+GGG + Chr7:82617-82636 None:intergenic 35.0%
CAGGAAGAATTGCAAACATA+AGG + Chr7:83293-83312 None:intergenic 35.0%
CATTATATCTCTTTGCTTGC+TGG - Chr7:85023-85042 MsG0780035919.01.T01:intron 35.0%
CTAACCAAACACCACATAAT+TGG + Chr7:83109-83128 None:intergenic 35.0%
CTGAAGTATATGTGCTCAAT+GGG + Chr7:83788-83807 None:intergenic 35.0%
CTGCATAAAAGCAAAGTTGT+GGG + Chr7:83832-83851 None:intergenic 35.0%
CTTAACAGATTGAGAGAGAA+GGG - Chr7:84268-84287 MsG0780035919.01.T01:intron 35.0%
GAAACTGGAATCAAGAACTT+CGG + Chr7:84126-84145 None:intergenic 35.0%
GATGCCATCTAATAATCTGA+AGG + Chr7:82114-82133 None:intergenic 35.0%
GCTTCCTTCAGATTATTAGA+TGG - Chr7:82107-82126 MsG0780035919.01.T01:three_prime_UTR 35.0%
GTAGTATGTGAGATGGATAT+AGG - Chr7:84413-84432 MsG0780035919.01.T01:intron 35.0%
TAGTAAGCCAAGAAGATGAA+GGG + Chr7:83498-83517 None:intergenic 35.0%
TATCCATCTCACATACTACT+AGG + Chr7:84412-84431 None:intergenic 35.0%
TCAAGGATTTGAAGATTCTG+AGG + Chr7:82618-82637 None:intergenic 35.0%
TCTTCCAATATAGAGCTCAA+CGG + Chr7:82981-83000 None:intergenic 35.0%
TGACTTATGTGCTGTAGATA+TGG - Chr7:84080-84099 MsG0780035919.01.T01:intron 35.0%
TGATAACAATGACACAAGAG+AGG - Chr7:85395-85414 MsG0780035919.01.T01:intron 35.0%
TGCATAAAAGCAAAGTTGTG+GGG + Chr7:83831-83850 None:intergenic 35.0%
TTACCTAGTAGTATGTGAGA+TGG - Chr7:84406-84425 MsG0780035919.01.T01:intron 35.0%
TTATGCAGTGTTATGCATCT+TGG - Chr7:83844-83863 MsG0780035919.01.T01:intron 35.0%
TTGGGTCCTCTAAATACAAT+AGG + Chr7:83646-83665 None:intergenic 35.0%
! ACCAAAGAGAAAGTGCATAA+AGG + Chr7:84676-84695 None:intergenic 35.0%
! CCAAAGAGAAAGTGCATAAA+GGG + Chr7:84675-84694 None:intergenic 35.0%
! CTGTAGTTTGTATCTTTAGG+AGG + Chr7:82939-82958 None:intergenic 35.0%
! TCATGTCTTGGTTAGTTCTT+TGG - Chr7:85158-85177 MsG0780035919.01.T01:intron 35.0%
!! AAAGCCAACCATTTTTGAGA+AGG + Chr7:84313-84332 None:intergenic 35.0%
!! AAGTTTTGTATGGAACCTAG+TGG - Chr7:85418-85437 MsG0780035919.01.T01:CDS 35.0%
!! ACAAGAGAGGAAGTTTTGTA+TGG - Chr7:85408-85427 MsG0780035919.01.T01:CDS 35.0%
!!! CTGTTTTGACTCAGTTATCA+AGG + Chr7:82635-82654 None:intergenic 35.0%
!!! GTCAGTCAAGTTTTGTTTGT+TGG - Chr7:83156-83175 MsG0780035919.01.T01:intron 35.0%
!!! TCTGTGTTTGGTTTTCTGTT+TGG - Chr7:82035-82054 MsG0780035919.01.T01:three_prime_UTR 35.0%
AAACCCGTTGAGCTCTATAT+TGG - Chr7:82974-82993 MsG0780035919.01.T01:intron 40.0%
AAAGCTCAAACCATAATCCG+TGG - Chr7:82732-82751 MsG0780035919.01.T01:intron 40.0%
AAGCTCAAACCATAATCCGT+GGG - Chr7:82733-82752 MsG0780035919.01.T01:intron 40.0%
ACAAACTACAGATTTGTGGC+TGG - Chr7:82948-82967 MsG0780035919.01.T01:intron 40.0%
ACAGCCTTCTCAAAAATGGT+TGG - Chr7:84306-84325 MsG0780035919.01.T01:intron 40.0%
CAAGGAAAACTACAGGATCA+GGG + Chr7:83953-83972 None:intergenic 40.0%
CAATCAATCACGGGATTACA+TGG + Chr7:82915-82934 None:intergenic 40.0%
CAGTGTTATGCATCTTGGTA+TGG - Chr7:83849-83868 MsG0780035919.01.T01:intron 40.0%
CCAAACACAGAGAAATCATG+GGG + Chr7:82026-82045 None:intergenic 40.0%
CCACAACCTCATACAAAAAG+TGG - Chr7:85222-85241 MsG0780035919.01.T01:intron 40.0%
CCCTTTATGCACTTTCTCTT+TGG - Chr7:84672-84691 MsG0780035919.01.T01:intron 40.0%
CGAGCATCTTCAGATGAATA+TGG + Chr7:83903-83922 None:intergenic 40.0%
CTAGTAAGCCAAGAAGATGA+AGG + Chr7:83499-83518 None:intergenic 40.0%
CTTCATCTTCTTGGCTTACT+AGG - Chr7:83497-83516 MsG0780035919.01.T01:intron 40.0%
CTTCCAATATAGAGCTCAAC+GGG + Chr7:82980-82999 None:intergenic 40.0%
GAGATAAACACTAACCTGCA+TGG + Chr7:81942-81961 None:intergenic 40.0%
GAGCTCTATATTGGAAGATC+TGG - Chr7:82983-83002 MsG0780035919.01.T01:intron 40.0%
GCTTAACAGATTGAGAGAGA+AGG - Chr7:84267-84286 MsG0780035919.01.T01:intron 40.0%
GTCATCTTGATTTCTGTTGC+AGG - Chr7:83555-83574 MsG0780035919.01.T01:intron 40.0%
TATTCATCTGAAGATGCTCG+TGG - Chr7:83903-83922 MsG0780035919.01.T01:intron 40.0%
TCAAGGAAAACTACAGGATC+AGG + Chr7:83954-83973 None:intergenic 40.0%
TGCAAATGTGTTTGCTTGGT+AGG + Chr7:84556-84575 None:intergenic 40.0%
TGCAGCAAATCTGGAAAGAT+TGG - Chr7:84939-84958 MsG0780035919.01.T01:intron 40.0%
TTTAGGAGGGCAATCAATCA+CGG + Chr7:82925-82944 None:intergenic 40.0%
! AGGTTGTGGTGGAAATTTGA+GGG + Chr7:85211-85230 None:intergenic 40.0%
! ATAGTGATGTGGCTTGTGAA+CGG - Chr7:82542-82561 MsG0780035919.01.T01:CDS 40.0%
! CTTTTTGTATGAGGTTGTGG+TGG + Chr7:85222-85241 None:intergenic 40.0%
! GACATTTAACTTCTCCATGC+AGG - Chr7:81925-81944 MsG0780035919.01.T01:three_prime_UTR 40.0%
! TCTTTGCTTGCTGGTATATG+TGG - Chr7:85032-85051 MsG0780035919.01.T01:intron 40.0%
!! AAGTACCTTTGCTTTTCCGA+TGG + Chr7:84156-84175 None:intergenic 40.0%
!! AATGGTTGGCTTTGCTCTAA+AGG - Chr7:84320-84339 MsG0780035919.01.T01:intron 40.0%
!! AGATTTGCTGCATAAGGCAT+GGG + Chr7:84931-84950 None:intergenic 40.0%
!! AGTACCTTTGCTTTTCCGAT+GGG + Chr7:84155-84174 None:intergenic 40.0%
!! CAAAACTTGACTGACTCGTA+TGG + Chr7:83151-83170 None:intergenic 40.0%
!! CTTTCCAGATTTGCTGCATA+AGG + Chr7:84937-84956 None:intergenic 40.0%
!! TCATTGATTCTGTCAGGCTT+TGG - Chr7:85251-85270 MsG0780035919.01.T01:intron 40.0%
!! TTTCCTGACAGAAGCATTGA+TGG + Chr7:84776-84795 None:intergenic 40.0%
!! TTTTGGCTATCTTGATGCAC+CGG - Chr7:84879-84898 MsG0780035919.01.T01:intron 40.0%
!!! CCACTTTTTGTATGAGGTTG+TGG + Chr7:85225-85244 None:intergenic 40.0%
AAACCACACCATACAGTTGG+AGG - Chr7:82566-82585 MsG0780035919.01.T01:CDS 45.0%
AAACCCCAACAGAAACCTGA+CGG - Chr7:82788-82807 MsG0780035919.01.T01:intron 45.0%
AAAGGAAGGAATCAGTGCTG+AGG - Chr7:84617-84636 MsG0780035919.01.T01:intron 45.0%
AACATCCTCCCAGATATGCT+GGG + Chr7:85357-85376 None:intergenic 45.0%
AACCACACCATACAGTTGGA+GGG - Chr7:82567-82586 MsG0780035919.01.T01:CDS 45.0%
AACTACAGATTTGTGGCTGG+AGG - Chr7:82951-82970 MsG0780035919.01.T01:intron 45.0%
AAGCACTCCCTTCATCTTCT+TGG - Chr7:83488-83507 MsG0780035919.01.T01:intron 45.0%
AATCACGGGATTACATGGGT+TGG + Chr7:82910-82929 None:intergenic 45.0%
AATCTGTGCATCTGTCATCG+AGG - Chr7:84852-84871 MsG0780035919.01.T01:intron 45.0%
AGACTGGTGACAGTTGAAGA+AGG - Chr7:84802-84821 MsG0780035919.01.T01:intron 45.0%
AGCTCAAACCATAATCCGTG+GGG - Chr7:82734-82753 MsG0780035919.01.T01:intron 45.0%
ATCACGGGATTACATGGGTT+GGG + Chr7:82909-82928 None:intergenic 45.0%
ATGTGTTTGCTTGGTAGGAC+AGG + Chr7:84551-84570 None:intergenic 45.0%
ATTTAGGCAGTTGCAGCCAT+AGG + Chr7:85114-85133 None:intergenic 45.0%
CAAGAACTTCGGCAGAAACA+GGG + Chr7:84115-84134 None:intergenic 45.0%
CATGCCTTATGCAGCAAATC+TGG - Chr7:84930-84949 MsG0780035919.01.T01:intron 45.0%
CCCCATGATTTCTCTGTGTT+TGG - Chr7:82023-82042 MsG0780035919.01.T01:three_prime_UTR 45.0%
GACTGGTGACAGTTGAAGAA+GGG - Chr7:84803-84822 MsG0780035919.01.T01:intron 45.0%
GTGAATTAGAAGGGTAGGCA+TGG - Chr7:82762-82781 MsG0780035919.01.T01:intron 45.0%
GTGCCAAAACTTTCAACCCA+GGG + Chr7:83881-83900 None:intergenic 45.0%
TAATTCCCAGCATATCTGGG+AGG - Chr7:85349-85368 MsG0780035919.01.T01:intron 45.0%
TCAAGAACTTCGGCAGAAAC+AGG + Chr7:84116-84135 None:intergenic 45.0%
TGGAGGTGAATTAGAAGGGT+AGG - Chr7:82757-82776 MsG0780035919.01.T01:intron 45.0%
TGTCAGGAAAACCAACAGAC+TGG - Chr7:84786-84805 MsG0780035919.01.T01:intron 45.0%
TTAGGAGGGCAATCAATCAC+GGG + Chr7:82924-82943 None:intergenic 45.0%
TTCAACTGTCACCAGTCTGT+TGG + Chr7:84800-84819 None:intergenic 45.0%
! CTATGGTCTAAAGCCTGTTG+TGG - Chr7:81895-81914 MsG0780035919.01.T01:three_prime_UTR 45.0%
! GAGGTTGTGGTGGAAATTTG+AGG + Chr7:85212-85231 None:intergenic 45.0%
! TCTGTCATCGAGGAGAGTTT+TGG - Chr7:84862-84881 MsG0780035919.01.T01:intron 45.0%
!! ATGCCCTGGGTTGAAAGTTT+TGG - Chr7:83875-83894 MsG0780035919.01.T01:intron 45.0%
!! CAGATTTGCTGCATAAGGCA+TGG + Chr7:84932-84951 None:intergenic 45.0%
AACCCCAACAGAAACCTGAC+GGG - Chr7:82789-82808 MsG0780035919.01.T01:intron 50.0%
ACCACACCATACAGTTGGAG+GGG - Chr7:82568-82587 MsG0780035919.01.T01:CDS 50.0%
ACTGATATTGTGTCCCCGTC+AGG + Chr7:82806-82825 None:intergenic 50.0%
ATGCCACAGATCTGTGCCTA+TGG - Chr7:85095-85114 MsG0780035919.01.T01:intron 50.0%
CCACCATCAATGCTTCTGTC+AGG - Chr7:84770-84789 MsG0780035919.01.T01:intron 50.0%
CCTTCCCATCGGAAAAGCAA+AGG - Chr7:84148-84167 MsG0780035919.01.T01:intron 50.0%
GAACATCCTCCCAGATATGC+TGG + Chr7:85358-85377 None:intergenic 50.0%
GAAGAAGGGTTTCCTCAGCA+TGG - Chr7:84817-84836 MsG0780035919.01.T01:intron 50.0%
GCTGAGACACTAGCAAAGGA+AGG - Chr7:84603-84622 MsG0780035919.01.T01:intron 50.0%
GGAATCTGCAAGCAATGCTC+TGG - Chr7:82056-82075 MsG0780035919.01.T01:three_prime_UTR 50.0%
GGCAAACCACACCATACAGT+TGG - Chr7:82563-82582 MsG0780035919.01.T01:CDS 50.0%
GGGGTGGAGGTGAATTAGAA+GGG - Chr7:82753-82772 MsG0780035919.01.T01:intron 50.0%
GGGTTTACTGGGATTGGAGT+TGG - Chr7:81863-81882 MsG0780035919.01.T01:three_prime_UTR 50.0%
GGTGCCAAAACTTTCAACCC+AGG + Chr7:83882-83901 None:intergenic 50.0%
TCAAACCATAATCCGTGGGG+TGG - Chr7:82737-82756 MsG0780035919.01.T01:intron 50.0%
TCCAGTTTCTGCCTTCCCAT+CGG - Chr7:84137-84156 MsG0780035919.01.T01:intron 50.0%
TCTAATTCACCTCCACCCCA+CGG + Chr7:82752-82771 None:intergenic 50.0%
TGGGGTGGAGGTGAATTAGA+AGG - Chr7:82752-82771 MsG0780035919.01.T01:intron 50.0%
TTGCTTGGTAGGACAGGAAG+AGG + Chr7:84545-84564 None:intergenic 50.0%
! GAAGGAATCAGTGCTGAGGT+AGG - Chr7:84621-84640 MsG0780035919.01.T01:intron 50.0%
!! CCTGACAGAAGCATTGATGG+TGG + Chr7:84773-84792 None:intergenic 50.0%
!! CCTTTGCTTTTCCGATGGGA+AGG + Chr7:84151-84170 None:intergenic 50.0%
!! GGAGTTGGTGCTGCTTACTA+TGG - Chr7:81878-81897 MsG0780035919.01.T01:three_prime_UTR 50.0%
!! TTGATGGTGGCTCGATCAAG+CGG + Chr7:84760-84779 None:intergenic 50.0%
AACACCAGCAGCAGCACCAT+TGG + Chr7:83665-83684 None:intergenic 55.0%
AACCATAATCCGTGGGGTGG+AGG - Chr7:82740-82759 MsG0780035919.01.T01:intron 55.0%
ACACCAGCAGCAGCACCATT+GGG + Chr7:83664-83683 None:intergenic 55.0%
ACCCCAACAGAAACCTGACG+GGG - Chr7:82790-82809 MsG0780035919.01.T01:intron 55.0%
CAGCCATAGGCACAGATCTG+TGG + Chr7:85101-85120 None:intergenic 55.0%
CAGGCTGGGTTTACTGGGAT+TGG - Chr7:81857-81876 MsG0780035919.01.T01:three_prime_UTR 55.0%
CCACACCATACAGTTGGAGG+GGG - Chr7:82569-82588 MsG0780035919.01.T01:CDS 55.0%
CTTGGTATGGCTCATGCCCT+GGG - Chr7:83862-83881 MsG0780035919.01.T01:intron 55.0%
GGCTGCTGAGACACTAGCAA+AGG - Chr7:84599-84618 MsG0780035919.01.T01:intron 55.0%
GGGTTTCCTCAGCATGGTGT+TGG - Chr7:84823-84842 MsG0780035919.01.T01:intron 55.0%
GTCCCCGTCAGGTTTCTGTT+GGG + Chr7:82795-82814 None:intergenic 55.0%
TCCCCGTCAGGTTTCTGTTG+GGG + Chr7:82794-82813 None:intergenic 55.0%
TCCGATGGGAAGGCAGAAAC+TGG + Chr7:84141-84160 None:intergenic 55.0%
TCTTGGTATGGCTCATGCCC+TGG - Chr7:83861-83880 MsG0780035919.01.T01:intron 55.0%
TGGCTATCTTGATGCACCGG+TGG - Chr7:84882-84901 MsG0780035919.01.T01:intron 55.0%
TGTCCCCGTCAGGTTTCTGT+TGG + Chr7:82796-82815 None:intergenic 55.0%
! GGAAAGATTGGCTGTCCCAC+AGG - Chr7:84951-84970 MsG0780035919.01.T01:intron 55.0%
!! AATGGTGCTGCTGCTGGTGT+TGG - Chr7:83664-83683 MsG0780035919.01.T01:CDS 55.0%
ACCGGTGGAGAGAATTGCCG+GGG - Chr7:84897-84916 MsG0780035919.01.T01:intron 60.0%
AGGCATGGGAACATCAGCCC+CGG + Chr7:84917-84936 None:intergenic 60.0%
CACCGGTGGAGAGAATTGCC+GGG - Chr7:84896-84915 MsG0780035919.01.T01:intron 60.0%
CCCCCTCCAACTGTATGGTG+TGG + Chr7:82572-82591 None:intergenic 60.0%
CTGTGCCCCCTCCAACTGTA+TGG + Chr7:82577-82596 None:intergenic 60.0%
TCAGCGCCAACACCATGCTG+AGG + Chr7:84832-84851 None:intergenic 60.0%
TGGTGGCTCGATCAAGCGGT+CGG + Chr7:84756-84775 None:intergenic 60.0%
! CACCTCCACCCCACGGATTA+TGG + Chr7:82745-82764 None:intergenic 60.0%
! CATACAGTTGGAGGGGGCAC+AGG - Chr7:82575-82594 MsG0780035919.01.T01:CDS 60.0%
! GCACCGGTGGAGAGAATTGC+CGG - Chr7:84895-84914 MsG0780035919.01.T01:intron 60.0%
GCCCCGGCAATTCTCTCCAC+CGG + Chr7:84901-84920 None:intergenic 65.0%
!! GGACCCAATGGTGCTGCTGC+TGG - Chr7:83658-83677 MsG0780035919.01.T01:CDS 65.0%
Chromosome Type Strat End Strand Name
Chr7 gene 81854 85495 81854 ID=MsG0780035919.01;Name=MsG0780035919.01
Chr7 mRNA 81854 85495 81854 ID=MsG0780035919.01.T01;Parent=MsG0780035919.01;Name=MsG0780035919.01.T01;_AED=0.48;_eAED=0.48;_QI=0|1|0.87|1|1|1|8|364|279
Chr7 exon 81854 82286 81854 ID=MsG0780035919.01.T01:exon:2082;Parent=MsG0780035919.01.T01
Chr7 exon 82377 82616 82377 ID=MsG0780035919.01.T01:exon:2081;Parent=MsG0780035919.01.T01
Chr7 exon 82711 82749 82711 ID=MsG0780035919.01.T01:exon:2080;Parent=MsG0780035919.01.T01
Chr7 exon 83008 83073 83008 ID=MsG0780035919.01.T01:exon:2079;Parent=MsG0780035919.01.T01
Chr7 exon 83180 83252 83180 ID=MsG0780035919.01.T01:exon:2078;Parent=MsG0780035919.01.T01
Chr7 exon 83364 83497 83364 ID=MsG0780035919.01.T01:exon:2077;Parent=MsG0780035919.01.T01
Chr7 exon 83647 83772 83647 ID=MsG0780035919.01.T01:exon:2076;Parent=MsG0780035919.01.T01
Chr7 exon 85403 85495 85403 ID=MsG0780035919.01.T01:exon:2075;Parent=MsG0780035919.01.T01
Chr7 CDS 85403 85495 85403 ID=MsG0780035919.01.T01:cds;Parent=MsG0780035919.01.T01
Chr7 CDS 83647 83772 83647 ID=MsG0780035919.01.T01:cds;Parent=MsG0780035919.01.T01
Chr7 CDS 83364 83497 83364 ID=MsG0780035919.01.T01:cds;Parent=MsG0780035919.01.T01
Chr7 CDS 83180 83252 83180 ID=MsG0780035919.01.T01:cds;Parent=MsG0780035919.01.T01
Chr7 CDS 83008 83073 83008 ID=MsG0780035919.01.T01:cds;Parent=MsG0780035919.01.T01
Chr7 CDS 82711 82749 82711 ID=MsG0780035919.01.T01:cds;Parent=MsG0780035919.01.T01
Chr7 CDS 82377 82616 82377 ID=MsG0780035919.01.T01:cds;Parent=MsG0780035919.01.T01
Chr7 CDS 82218 82286 82218 ID=MsG0780035919.01.T01:cds;Parent=MsG0780035919.01.T01
Chr7 three_prime_UTR 81854 82217 81854 ID=MsG0780035919.01.T01:three_prime_utr;Parent=MsG0780035919.01.T01
Gene Sequence

>MsG0780035919.01.T01

ATGCAGGCTGGGTTTACTGGGATTGGAGTTGGTGCTGCTTACTATGGTCTAAAGCCTGTTGTGGAGTTTATGACATTTAACTTCTCCATGCAGGCAATAGATCACATCATTAATTCTGCTGCAAAATCAAATTACATGTCTGCTGGGCAAATAAATGTACCTATTGTATTTAGAGGACCCAATGGTGCTGCTGCTGGTGTTGGTGCTCAGCACTCTCATTGTTATGCATCTTGGTATGGCTCATGCCCTGGGTTGAAAGTTTTGGCACCATATTCATCTGAAGATGCTCGTGGTTTACTTAAAGCTGCTATAAGGGACCCTGATCCTGTAGTTTTCCTTGAAAATGAGTTACTATATGGTGAGTCATTCCCTGTTTCTGCCGAAGTTCTTGATTCCAGTTTCTGCCTTCCCATCGGAAAAGCAAAGATTGAGAGAGAAGGGAAAGATGTGACTATTACAGCCTTCTCAAAAATGGTTGGCTTTGCTCTAAAGGCTGCTGAGACACTAGCAAAGGAAGGAATCAGTGCTGAGGTTATTAATTTAAGGTCAATCCGACCGCTTGATCGAGCCACCATCAATGCTTCTGTCAGGAAAACCAACAGACTGGTGACAGTTGAAGAAGGGTTTCCTCAGCATGGTGTTGGCGCTGAAATCTGTGCATCTGTCATCGAGGAGAGTTTTGGCTATCTTGATGCACCGGTGGAGAGAATTGCCGGGGCTGATGTTCCCATGCCTTATGCAGCAAATCTGGAAAGATTGGCTGTCCCACAGATTGAAGATATTGTTCGTGCTGCAAAGAGAGCATGCCACAGATCTGTGCCTATGGCTGCAACTGCCTAA
Protein sequence

>MsG0780035919.01.T01

MQAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSAGQINVPIVFRGPNGAAAGVGAQHSHCYASWYGSCPGLKVLAPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKMVGFALKAAETLAKEGISAEVINLRSIRPLDRATINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFGYLDAPVERIAGADVPMPYAANLERLAVPQIEDIVRAAKRACHRSVPMAATA*