AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480022691.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480022691.01.T01 MTR_4g094302 98.438 192 2 1 1 192 1 191 6.03e-142 393
MsG0480022691.01.T01 MTR_4g094302 94.375 160 5 2 1 157 1 159 4.97e-110 311
MsG0480022691.01.T01 MTR_8g093790 46.040 202 74 8 6 192 4 185 4.69e-50 160
MsG0480022691.01.T01 MTR_3g096400 40.580 207 100 7 7 191 2 207 1.24e-46 152
MsG0480022691.01.T01 MTR_2g080010 42.945 163 80 2 11 160 14 176 5.13e-43 147
MsG0480022691.01.T01 MTR_4g081870 42.675 157 78 3 12 160 9 161 9.36e-42 142
MsG0480022691.01.T01 MTR_2157s0010 40.994 161 83 3 12 160 8 168 2.50e-41 140
MsG0480022691.01.T01 MTR_8g059170 42.683 164 80 3 10 165 12 169 3.10e-41 142
MsG0480022691.01.T01 MTR_4g089135 40.000 175 80 2 11 160 14 188 4.16e-41 142
MsG0480022691.01.T01 MTR_3g088110 42.857 161 78 3 8 160 3 157 5.90e-40 137
MsG0480022691.01.T01 MTR_2g079990 42.073 164 79 4 10 165 14 169 7.55e-40 139
MsG0480022691.01.T01 MTR_7g100990 39.881 168 89 3 2 160 1 165 9.59e-40 138
MsG0480022691.01.T01 MTR_5g041940 40.252 159 83 3 10 160 1 155 1.42e-39 135
MsG0480022691.01.T01 MTR_7g005280 39.412 170 85 4 7 168 10 169 7.74e-39 134
MsG0480022691.01.T01 MTR_8g094580 41.509 159 80 3 10 160 5 158 1.06e-38 134
MsG0480022691.01.T01 MTR_2g093810 38.889 162 89 2 4 157 6 165 1.42e-38 135
MsG0480022691.01.T01 MTR_2g079990 36.022 186 87 3 10 165 14 197 1.10e-36 131
MsG0480022691.01.T01 MTR_3g096920 40.881 159 80 3 10 160 5 157 3.32e-36 128
MsG0480022691.01.T01 MTR_7g085220 37.500 168 88 3 10 162 6 171 4.14e-36 129
MsG0480022691.01.T01 MTR_1g096430 40.000 160 75 4 12 160 7 156 6.47e-36 128
MsG0480022691.01.T01 MTR_2g064090 41.615 161 77 4 10 160 4 157 4.85e-35 126
MsG0480022691.01.T01 MTR_3g109340 37.427 171 87 3 12 174 22 180 1.21e-34 125
MsG0480022691.01.T01 MTR_3g109340 37.427 171 86 3 12 174 22 179 1.52e-34 125
MsG0480022691.01.T01 MTR_4g098630 40.120 167 83 4 10 165 4 164 2.97e-34 123
MsG0480022691.01.T01 MTR_5g012080 36.970 165 85 4 7 160 2 158 4.73e-34 124
MsG0480022691.01.T01 MTR_2g062730 37.654 162 81 5 10 160 8 160 5.06e-34 123
MsG0480022691.01.T01 MTR_1g008740 40.000 160 76 4 12 160 13 163 5.11e-34 123
MsG0480022691.01.T01 MTR_1g008740 40.000 160 76 4 12 160 27 177 5.31e-34 124
MsG0480022691.01.T01 MTR_5g014300 36.158 177 89 4 8 169 2 169 5.39e-34 123
MsG0480022691.01.T01 MTR_4g101680 39.394 165 79 4 7 160 2 156 9.10e-34 123
MsG0480022691.01.T01 MTR_4g036030 37.888 161 79 4 11 160 6 156 9.66e-34 122
MsG0480022691.01.T01 MTR_8g467490 38.608 158 86 2 14 160 16 173 1.37e-33 123
MsG0480022691.01.T01 MTR_5g021710 39.375 160 76 4 12 160 8 157 2.02e-33 122
MsG0480022691.01.T01 MTR_8g024480 36.095 169 92 4 6 160 9 175 3.84e-33 122
MsG0480022691.01.T01 MTR_5g076850 40.373 161 78 4 10 160 4 156 3.86e-33 124
MsG0480022691.01.T01 MTR_4g108760 34.375 192 102 4 1 174 6 191 3.98e-33 121
MsG0480022691.01.T01 MTR_3g064580 38.509 161 82 4 10 160 4 157 7.94e-33 124
MsG0480022691.01.T01 MTR_8g076110 37.500 160 79 4 12 160 6 155 1.18e-32 119
MsG0480022691.01.T01 MTR_1g069805 35.542 166 89 2 10 167 8 163 1.46e-32 118
MsG0480022691.01.T01 MTR_6g477900 35.955 178 91 5 10 172 4 173 1.73e-32 117
MsG0480022691.01.T01 MTR_6g084430 34.197 193 106 4 11 192 4 186 2.14e-32 119
MsG0480022691.01.T01 MTR_3g070030 38.650 163 85 4 7 160 14 170 2.38e-32 119
MsG0480022691.01.T01 MTR_5g040420 37.580 157 88 2 14 160 16 172 2.40e-32 120
MsG0480022691.01.T01 MTR_4g035590 36.145 166 84 4 6 160 2 156 2.49e-32 119
MsG0480022691.01.T01 MTR_3g096920 41.667 144 73 2 10 145 5 145 3.52e-32 118
MsG0480022691.01.T01 MTR_6g012670 36.413 184 103 4 3 178 11 188 5.64e-32 117
MsG0480022691.01.T01 MTR_7g097090 38.217 157 79 2 10 158 8 154 6.27e-32 117
MsG0480022691.01.T01 MTR_8g099750 37.179 156 89 4 12 160 14 167 8.17e-32 115
MsG0480022691.01.T01 MTR_6g011860 39.130 161 86 3 11 160 14 173 9.92e-31 115
MsG0480022691.01.T01 MTR_2g064470 35.196 179 95 5 10 178 9 176 1.15e-30 114
MsG0480022691.01.T01 MTR_3g435150 37.580 157 84 3 12 160 16 166 1.51e-30 113
MsG0480022691.01.T01 MTR_2g078700 36.250 160 90 2 9 160 20 175 2.14e-30 114
MsG0480022691.01.T01 MTR_3g098810 36.420 162 93 3 12 164 14 174 8.89e-30 110
MsG0480022691.01.T01 MTR_1g090720 37.654 162 89 3 10 161 40 199 4.30e-29 112
MsG0480022691.01.T01 MTR_6g032770 31.156 199 125 2 1 191 7 201 6.15e-29 110
MsG0480022691.01.T01 MTR_0036s0150 37.736 159 77 7 14 160 7 155 2.20e-28 110
MsG0480022691.01.T01 MTR_3g096140 36.709 158 82 4 14 161 9 158 3.31e-28 107
MsG0480022691.01.T01 MTR_7g085260 31.792 173 104 3 1 163 6 174 5.15e-28 108
MsG0480022691.01.T01 MTR_4g134460 38.710 155 78 3 14 160 56 201 6.87e-28 108
MsG0480022691.01.T01 MTR_1g090723 35.802 162 77 6 14 160 10 159 7.90e-28 109
MsG0480022691.01.T01 MTR_2g068880 31.707 164 96 4 14 161 24 187 8.14e-28 106
MsG0480022691.01.T01 MTR_3g096140 36.709 158 82 4 14 161 9 158 9.39e-28 107
MsG0480022691.01.T01 MTR_2g068920 33.533 167 89 5 14 161 23 186 1.06e-27 105
MsG0480022691.01.T01 MTR_7g105170 35.673 171 84 8 11 162 3 166 1.84e-27 104
MsG0480022691.01.T01 MTR_5g090970 31.447 159 97 3 14 160 20 178 2.25e-27 105
MsG0480022691.01.T01 MTR_5g090970 31.646 158 97 3 14 160 20 177 2.59e-27 105
MsG0480022691.01.T01 MTR_3g070040 35.838 173 96 5 7 171 3 168 3.84e-27 105
MsG0480022691.01.T01 MTR_3g116070 37.736 159 87 3 1 147 12 170 5.65e-27 105
MsG0480022691.01.T01 MTR_8g093580 36.250 160 84 5 12 161 6 157 1.16e-26 105
MsG0480022691.01.T01 MTR_1g090723 34.568 162 78 6 14 160 10 158 2.14e-26 105
MsG0480022691.01.T01 MTR_1g090723 34.568 162 78 6 14 160 10 158 2.28e-26 105
MsG0480022691.01.T01 MTR_8g063550 36.250 160 84 5 12 161 6 157 6.30e-26 103
MsG0480022691.01.T01 MTR_8g063550 36.250 160 84 5 12 161 6 157 7.97e-26 103
MsG0480022691.01.T01 MTR_3g098810 39.041 146 78 4 4 139 5 149 9.85e-26 97.8
MsG0480022691.01.T01 MTR_8g063550 36.250 160 84 5 12 161 6 157 1.01e-25 101
MsG0480022691.01.T01 MTR_2g086880 34.810 158 79 4 14 162 20 162 1.43e-25 103
MsG0480022691.01.T01 MTR_7g011120 32.787 183 98 4 7 172 3 177 1.70e-25 100
MsG0480022691.01.T01 MTR_2g086880 34.810 158 79 4 14 162 20 162 1.80e-25 102
MsG0480022691.01.T01 MTR_7g011130 31.148 183 107 3 7 172 14 194 2.90e-25 100
MsG0480022691.01.T01 MTR_4g075980 35.256 156 81 3 14 160 17 161 3.42e-25 99.4
MsG0480022691.01.T01 MTR_2g086690 37.888 161 80 6 13 158 5 160 3.42e-25 98.6
MsG0480022691.01.T01 MTR_4g052620 36.250 160 85 5 12 158 5 160 9.42e-25 97.4
MsG0480022691.01.T01 MTR_3g093040 31.098 164 95 4 10 163 106 261 1.41e-23 95.5
MsG0480022691.01.T01 MTR_1g097300 37.226 137 74 4 14 140 21 155 2.80e-23 96.7
MsG0480022691.01.T01 MTR_8g023840 30.952 168 87 6 4 157 3 155 1.18e-20 88.6
MsG0480022691.01.T01 MTR_3g093050 30.061 163 96 4 11 163 21 175 5.01e-20 87.4
MsG0480022691.01.T01 MTR_3g093050 30.061 163 96 4 11 163 21 175 5.38e-20 87.4
MsG0480022691.01.T01 MTR_8g023930 29.885 174 99 6 12 174 24 185 6.55e-20 86.7
MsG0480022691.01.T01 MTR_5g069030 30.864 162 94 4 12 163 25 178 7.11e-20 87.0
MsG0480022691.01.T01 MTR_8g023900 30.682 176 89 8 15 174 196 354 1.88e-19 85.5
MsG0480022691.01.T01 MTR_8g023900 26.705 176 104 6 12 174 12 175 1.65e-16 77.0
MsG0480022691.01.T01 MTR_3g096140 32.414 145 80 4 27 161 1 137 4.99e-19 83.6
MsG0480022691.01.T01 MTR_8g023860 27.950 161 87 7 11 157 11 156 4.71e-17 78.6
MsG0480022691.01.T01 MTR_8g094580 35.185 108 57 3 61 160 2 104 2.01e-16 74.7
MsG0480022691.01.T01 MTR_8g023880 28.571 189 84 8 9 167 4 171 3.91e-15 72.0
MsG0480022691.01.T01 MTR_7g070140 49.153 59 30 0 78 136 38 96 3.44e-14 66.6
MsG0480022691.01.T01 MTR_7g083360 30.667 150 91 6 6 144 4 151 4.96e-14 67.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480022691.01.T01 AT5G64530 66.492 191 51 3 10 191 1 187 5.41e-84 246
MsG0480022691.01.T01 AT5G64530 70.161 124 33 1 10 133 1 120 2.52e-63 193
MsG0480022691.01.T01 AT4G27410 43.293 164 77 3 10 165 12 167 2.07e-41 141
MsG0480022691.01.T01 AT1G69490 39.474 190 96 5 11 186 8 192 5.13e-41 140
MsG0480022691.01.T01 AT1G52890 43.902 164 76 4 10 165 12 167 5.88e-41 141
MsG0480022691.01.T01 AT3G15500 44.512 164 75 4 10 165 12 167 1.00e-40 140
MsG0480022691.01.T01 AT1G61110 42.424 165 80 4 11 161 15 178 1.09e-40 140
MsG0480022691.01.T01 AT1G01720 38.860 193 100 5 10 191 5 190 2.06e-39 136
MsG0480022691.01.T01 AT4G27410 39.779 181 76 4 10 165 12 184 3.39e-38 134
MsG0480022691.01.T01 AT3G04070 40.741 162 84 3 11 160 9 170 3.80e-38 134
MsG0480022691.01.T01 AT1G77450 39.888 178 86 4 5 167 3 174 4.20e-38 132
MsG0480022691.01.T01 AT2G24430 40.881 159 79 2 12 162 16 167 7.84e-37 130
MsG0480022691.01.T01 AT2G24430 40.881 159 79 2 12 162 16 167 7.84e-37 130
MsG0480022691.01.T01 AT5G13180 42.767 159 75 3 7 158 9 158 8.74e-37 128
MsG0480022691.01.T01 AT5G63790 40.881 159 82 3 10 160 48 202 1.63e-36 129
MsG0480022691.01.T01 AT3G15510 38.372 172 87 3 16 168 21 192 1.72e-36 130
MsG0480022691.01.T01 AT5G63790 40.881 159 82 3 10 160 58 212 2.24e-36 129
MsG0480022691.01.T01 AT3G04070 39.326 178 80 5 11 160 9 186 6.57e-36 129
MsG0480022691.01.T01 AT2G33480 40.854 164 80 4 10 166 13 166 7.07e-36 126
MsG0480022691.01.T01 AT4G17980 39.130 161 84 3 12 162 6 162 1.77e-35 125
MsG0480022691.01.T01 AT2G33480 40.244 164 79 4 10 166 13 164 3.08e-35 125
MsG0480022691.01.T01 AT4G17980 39.130 161 84 3 12 162 6 162 3.55e-35 125
MsG0480022691.01.T01 AT1G71930 38.012 171 85 4 12 171 9 169 4.40e-35 125
MsG0480022691.01.T01 AT1G71930 38.012 171 85 4 12 171 9 169 4.40e-35 125
MsG0480022691.01.T01 AT4G36160 38.922 167 81 4 5 160 3 159 5.23e-35 127
MsG0480022691.01.T01 AT4G36160 38.922 167 81 4 5 160 3 159 5.23e-35 127
MsG0480022691.01.T01 AT4G36160 38.922 167 81 4 5 160 7 163 5.25e-35 127
MsG0480022691.01.T01 AT3G18400 40.373 161 73 4 11 160 4 152 8.76e-35 125
MsG0480022691.01.T01 AT5G53950 40.828 169 86 4 12 171 17 180 8.81e-35 126
MsG0480022691.01.T01 AT5G07680 39.623 159 82 3 10 160 1 153 1.20e-34 124
MsG0480022691.01.T01 AT5G07680 39.623 159 82 3 10 160 15 167 1.25e-34 125
MsG0480022691.01.T01 AT5G46590 40.373 161 80 4 12 162 6 160 1.59e-34 124
MsG0480022691.01.T01 AT5G08790 39.506 162 86 3 7 160 2 159 1.94e-34 123
MsG0480022691.01.T01 AT2G18060 38.650 163 79 4 9 160 6 158 3.69e-34 124
MsG0480022691.01.T01 AT2G18060 38.650 163 79 4 9 160 6 158 3.69e-34 124
MsG0480022691.01.T01 AT5G61430 38.994 159 83 3 10 160 14 166 1.26e-33 122
MsG0480022691.01.T01 AT5G62380 37.037 162 81 4 10 160 5 156 1.65e-33 122
MsG0480022691.01.T01 AT5G62380 37.037 162 81 4 10 160 5 156 1.65e-33 122
MsG0480022691.01.T01 AT1G79580 37.654 162 80 5 10 160 15 166 1.67e-33 122
MsG0480022691.01.T01 AT1G79580 37.654 162 80 5 10 160 15 166 1.67e-33 122
MsG0480022691.01.T01 AT1G79580 37.654 162 80 5 10 160 15 166 1.67e-33 122
MsG0480022691.01.T01 AT1G79580 37.654 162 80 5 10 160 15 166 1.67e-33 122
MsG0480022691.01.T01 AT1G79580 37.654 162 80 5 10 160 15 166 1.67e-33 122
MsG0480022691.01.T01 AT1G32510 39.157 166 81 4 12 162 6 166 1.85e-33 120
MsG0480022691.01.T01 AT5G66300 36.842 171 88 4 1 160 1 162 3.51e-33 120
MsG0480022691.01.T01 AT1G12260 36.970 165 83 4 7 160 2 156 5.87e-33 120
MsG0480022691.01.T01 AT3G61910 35.429 175 93 4 5 161 4 176 8.77e-33 120
MsG0480022691.01.T01 AT5G39610 36.364 176 95 4 9 176 17 183 1.40e-32 118
MsG0480022691.01.T01 AT1G12260 36.970 165 83 4 7 160 2 156 1.70e-32 120
MsG0480022691.01.T01 AT3G12977 34.426 183 105 3 10 184 16 191 1.90e-32 118
MsG0480022691.01.T01 AT3G17730 37.654 162 83 4 10 161 4 157 2.36e-32 117
MsG0480022691.01.T01 AT5G46590 43.382 136 66 3 12 137 6 140 3.20e-32 117
MsG0480022691.01.T01 AT1G65910 36.646 161 84 4 10 160 4 156 3.41e-32 122
MsG0480022691.01.T01 AT1G62700 36.970 165 83 4 7 160 2 156 4.55e-32 119
MsG0480022691.01.T01 AT1G62700 36.970 165 83 4 7 160 2 156 4.55e-32 119
MsG0480022691.01.T01 AT1G76420 37.725 167 89 2 8 166 18 177 5.30e-32 118
MsG0480022691.01.T01 AT1G52880 36.709 158 88 3 16 161 21 178 7.31e-32 117
MsG0480022691.01.T01 AT4G10350 37.195 164 84 4 6 158 3 158 7.73e-32 117
MsG0480022691.01.T01 AT1G33280 36.145 166 84 4 6 160 2 156 8.62e-32 117
MsG0480022691.01.T01 AT2G46770 34.483 174 94 4 5 160 9 180 2.23e-31 117
MsG0480022691.01.T01 AT1G54330 40.123 162 76 4 10 161 4 154 2.37e-31 115
MsG0480022691.01.T01 AT1G26870 37.017 181 97 3 12 181 16 190 2.46e-31 117
MsG0480022691.01.T01 AT1G56010 35.938 192 100 6 10 191 17 195 2.59e-31 116
MsG0480022691.01.T01 AT3G03200 37.267 161 84 4 10 160 4 157 3.55e-31 118
MsG0480022691.01.T01 AT5G17260 36.646 161 85 4 10 160 4 157 8.01e-31 117
MsG0480022691.01.T01 AT3G04060 35.897 195 103 6 10 191 18 203 2.15e-30 114
MsG0480022691.01.T01 AT1G32770 33.520 179 98 5 1 160 1 177 3.40e-30 114
MsG0480022691.01.T01 AT2G02450 38.710 155 78 3 14 160 53 198 5.67e-30 113
MsG0480022691.01.T01 AT3G10490 37.037 162 85 4 10 161 25 179 8.98e-30 110
MsG0480022691.01.T01 AT2G02450 38.710 155 78 3 14 160 53 198 1.01e-29 113
MsG0480022691.01.T01 AT3G10500 33.333 213 101 6 10 189 7 211 2.35e-29 114
MsG0480022691.01.T01 AT5G04410 38.554 166 74 6 10 160 7 159 3.59e-29 113
MsG0480022691.01.T01 AT3G15170 37.179 156 82 4 12 157 20 169 3.73e-29 110
MsG0480022691.01.T01 AT3G10480 36.420 162 86 4 10 161 25 179 4.38e-29 112
MsG0480022691.01.T01 AT5G39820 34.043 188 96 4 1 160 4 191 5.51e-29 110
MsG0480022691.01.T01 AT3G10480 36.420 162 85 4 10 161 25 178 7.06e-29 111
MsG0480022691.01.T01 AT3G29035 37.037 162 88 3 10 163 22 177 7.42e-29 109
MsG0480022691.01.T01 AT5G18270 36.875 160 88 3 10 161 19 173 1.28e-28 109
MsG0480022691.01.T01 AT3G10490 37.037 162 85 4 10 161 25 179 1.61e-28 110
MsG0480022691.01.T01 AT3G12910 34.756 164 89 5 14 160 23 185 2.02e-28 108
MsG0480022691.01.T01 AT5G18270 36.250 160 89 3 10 161 19 173 2.83e-28 108
MsG0480022691.01.T01 AT2G43000 34.194 155 87 3 14 160 20 167 5.26e-28 106
MsG0480022691.01.T01 AT5G22290 37.342 158 76 5 14 162 23 166 2.03e-27 106
MsG0480022691.01.T01 AT4G35580 36.686 169 85 5 11 167 8 166 1.98e-26 105
MsG0480022691.01.T01 AT4G35580 36.686 169 85 5 11 167 8 166 2.46e-26 105
MsG0480022691.01.T01 AT4G35580 36.686 169 85 5 11 167 8 166 2.57e-26 105
MsG0480022691.01.T01 AT4G28530 33.898 177 81 4 12 163 10 175 4.56e-26 102
MsG0480022691.01.T01 AT1G33060 34.545 165 90 4 12 166 24 180 8.02e-26 103
MsG0480022691.01.T01 AT1G33060 34.545 165 90 4 12 166 24 180 8.70e-26 103
MsG0480022691.01.T01 AT2G27300 41.732 127 63 3 12 129 14 138 1.17e-25 101
MsG0480022691.01.T01 AT2G17040 34.615 156 82 3 14 160 8 152 1.21e-25 100
MsG0480022691.01.T01 AT3G10480 30.769 195 85 4 10 161 25 212 3.37e-25 102
MsG0480022691.01.T01 AT3G44290 38.400 125 66 4 14 129 16 138 9.28e-25 97.1
MsG0480022691.01.T01 AT3G44290 38.400 125 66 4 14 129 16 138 2.38e-24 97.8
MsG0480022691.01.T01 AT1G32870 43.511 131 64 3 9 131 7 135 2.68e-24 99.4
MsG0480022691.01.T01 AT1G32870 43.511 131 64 3 9 131 7 135 2.76e-24 99.4
MsG0480022691.01.T01 AT1G34190 40.000 130 66 4 14 133 18 145 3.05e-24 99.4
MsG0480022691.01.T01 AT1G32870 43.511 131 64 3 9 131 43 171 3.06e-24 99.4
MsG0480022691.01.T01 AT3G49530 33.333 162 91 5 11 162 12 166 6.56e-24 97.8
MsG0480022691.01.T01 AT3G49530 33.333 162 91 5 11 162 12 166 6.66e-24 98.2
MsG0480022691.01.T01 AT1G34180 39.231 130 67 4 14 133 18 145 1.69e-23 96.7
MsG0480022691.01.T01 AT1G34180 39.231 130 67 4 14 133 18 145 1.95e-23 97.1
MsG0480022691.01.T01 AT5G64060 32.121 165 92 6 8 161 2 157 1.13e-22 93.6
MsG0480022691.01.T01 AT5G09330 33.333 162 90 5 10 161 4 157 1.31e-22 94.7
MsG0480022691.01.T01 AT5G09330 33.333 162 90 5 10 161 4 157 1.31e-22 94.7
MsG0480022691.01.T01 AT5G09330 33.333 162 90 5 10 161 4 157 1.31e-22 94.7
MsG0480022691.01.T01 AT5G09330 33.333 162 90 5 10 161 4 157 1.31e-22 94.7
MsG0480022691.01.T01 AT5G09330 33.333 162 90 5 10 161 4 157 1.31e-22 94.7
MsG0480022691.01.T01 AT1G34180 35.915 142 67 4 14 133 18 157 1.03e-21 92.0
MsG0480022691.01.T01 AT5G04395 32.450 151 80 5 4 132 20 170 1.05e-21 87.8
MsG0480022691.01.T01 AT1G34180 35.915 142 67 4 14 133 18 157 1.23e-21 92.0
MsG0480022691.01.T01 AT5G24590 31.288 163 95 4 10 162 11 166 3.49e-21 90.5
MsG0480022691.01.T01 AT5G22380 35.404 161 79 6 15 158 8 160 1.70e-20 85.9
MsG0480022691.01.T01 AT3G44350 33.918 171 92 7 12 168 5 168 1.76e-20 85.9
MsG0480022691.01.T01 AT5G50820 33.735 166 100 4 7 166 12 173 1.87e-20 84.7
MsG0480022691.01.T01 AT5G14000 29.255 188 103 7 6 176 9 183 7.43e-20 83.6
MsG0480022691.01.T01 AT3G44350 35.915 142 75 5 12 139 5 144 1.34e-19 81.6
MsG0480022691.01.T01 AT1G56010 33.094 139 73 4 61 191 2 128 3.53e-18 80.1
MsG0480022691.01.T01 AT5G14000 30.986 142 84 5 6 137 9 146 2.23e-16 73.2
MsG0480022691.01.T01 AT1G02230 28.492 179 102 7 13 178 4 169 2.68e-16 76.3
MsG0480022691.01.T01 AT3G12977 31.250 128 73 3 65 184 18 138 4.14e-16 73.9
MsG0480022691.01.T01 AT5G61430 32.836 134 73 4 67 192 8 132 5.27e-16 74.3
MsG0480022691.01.T01 AT4G10350 34.951 103 51 3 66 160 19 113 1.11e-15 73.9
MsG0480022691.01.T01 AT2G33480 40.000 90 46 2 77 166 28 109 2.15e-15 71.6
MsG0480022691.01.T01 AT4G01550 27.950 161 93 5 15 163 7 156 4.00e-15 73.2
MsG0480022691.01.T01 AT4G01520 30.061 163 90 5 13 162 5 156 1.79e-14 70.5
MsG0480022691.01.T01 AT4G01540 29.448 163 87 7 15 162 7 156 3.45e-14 70.5
MsG0480022691.01.T01 AT4G01540 29.448 163 87 7 15 162 7 156 3.55e-14 70.5
MsG0480022691.01.T01 AT3G04420 33.333 129 72 5 13 129 4 130 3.85e-14 69.3
MsG0480022691.01.T01 AT4G01540 29.448 163 87 7 15 162 7 156 4.53e-14 70.1
MsG0480022691.01.T01 AT3G04420 33.333 129 72 5 13 129 4 130 4.73e-14 69.7
MsG0480022691.01.T01 AT4G01540 29.448 163 87 7 15 162 7 156 5.02e-14 69.7
MsG0480022691.01.T01 AT1G02250 28.834 163 90 7 13 162 4 153 4.19e-13 67.0
MsG0480022691.01.T01 AT3G56520 27.072 181 99 7 12 176 8 171 8.23e-13 63.9
MsG0480022691.01.T01 AT2G43000 34.524 84 48 2 77 160 13 89 7.54e-12 62.0
MsG0480022691.01.T01 AT3G10490 36.471 85 47 2 77 161 2 79 1.23e-11 62.8
MsG0480022691.01.T01 AT3G10490 36.471 85 47 2 77 161 2 79 1.23e-11 62.8
MsG0480022691.01.T01 AT4G28530 33.945 109 46 3 12 95 10 117 1.28e-11 62.4
MsG0480022691.01.T01 AT1G01010 28.994 169 90 7 15 166 6 161 2.23e-11 62.0
MsG0480022691.01.T01 AT2G18060 35.443 79 41 2 82 160 2 70 7.63e-11 60.1

Find 58 sgRNAs with CRISPR-Local

Find 76 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCATTTGCATCATCTAATT+TGG 0.155320 4:-75537906 None:intergenic
AAGAATATACTAACTGATTT+TGG 0.171613 4:-75537557 None:intergenic
CATCTGGATGACAAGGTAAA+AGG 0.259924 4:-75537099 None:intergenic
CATTAGGTGCTTCTCCAATA+TGG 0.269862 4:-75537445 None:intergenic
TATCTAAGTGCCCCACTTGC+AGG 0.278427 4:-75538149 None:intergenic
AAGCCTTTCTATGAAGAAAA+TGG 0.313106 4:-75537075 None:intergenic
AAATATTATGTGTTCCATAT+TGG 0.324951 4:+75537431 MsG0480022691.01.T01:CDS
CAATTGGTTTGGTTACCATT+AGG 0.336748 4:-75537461 None:intergenic
GAATGACTAACAGTGGTTAT+TGG 0.338084 4:+75537345 MsG0480022691.01.T01:CDS
CTCTATTCTCTAAATAATAA+TGG 0.341182 4:+75536976 MsG0480022691.01.T01:exon
GAAATTAAATGAAAGAGAAA+TGG 0.371266 4:-75536944 None:intergenic
TGGGACAGAGCTATCTTGTT+TGG 0.375974 4:+75537839 MsG0480022691.01.T01:CDS
TTAGATATTTATCTCCCATT+TGG 0.379877 4:-75537989 None:intergenic
ACGTCATATTGCATATTGTT+TGG 0.391184 4:-75538189 None:intergenic
ATATTCTTGCATTATCCAAT+TGG 0.402397 4:-75537477 None:intergenic
CTTGCATTATCCAATTGGTT+TGG 0.405683 4:-75537472 None:intergenic
AATGGTACTATTATAGTAGA+AGG 0.419835 4:+75537312 MsG0480022691.01.T01:CDS
ATTGTTTGTAGGTAGAGCTT+TGG 0.421136 4:+75537277 MsG0480022691.01.T01:intron
ATGGAAGCTAAAGTAGCTAA+TGG 0.422045 4:-75538081 None:intergenic
GTAGGTAGAGCTTTGGAAGA+GGG 0.424184 4:+75537284 MsG0480022691.01.T01:intron
AGAAATGGAGCTAGGTAGAA+TGG 0.430214 4:-75536929 None:intergenic
TGAAGTTGCCATGGATCAAA+TGG 0.443931 4:-75537145 None:intergenic
ATCTGGATGACAAGGTAAAA+GGG 0.446209 4:-75537098 None:intergenic
TTTGATCCATGGCAACTTCA+AGG 0.450052 4:+75537148 MsG0480022691.01.T01:CDS
TCAAGATCAGGGATAACATC+TGG 0.461523 4:-75537115 None:intergenic
CTAATGGTAACCAAACCAAT+TGG 0.465135 4:+75537462 MsG0480022691.01.T01:CDS
AATGGATAGAGGTCAAGATC+AGG 0.481249 4:-75537127 None:intergenic
ACCTCTATCCATTTGATCCA+TGG 0.490738 4:+75537137 MsG0480022691.01.T01:CDS
TGTAGGTAGAGCTTTGGAAG+AGG 0.497333 4:+75537283 MsG0480022691.01.T01:intron
AATGAAAGAGAAATGGAGCT+AGG 0.497819 4:-75536937 None:intergenic
CAGTGGTTATTGGATGCCAA+TGG 0.509528 4:+75537355 MsG0480022691.01.T01:CDS
AGCTCAAGCAATAAGAGAGT+TGG 0.517821 4:+75537401 MsG0480022691.01.T01:CDS
CATATTGGAGAAGCACCTAA+TGG 0.525131 4:+75537446 MsG0480022691.01.T01:CDS
GCCATGGATCAAATGGATAG+AGG 0.536595 4:-75537138 None:intergenic
AGTGGTTATTGGATGCCAAT+GGG 0.539139 4:+75537356 MsG0480022691.01.T01:CDS
ACTTGTTCTTCCATTCCCAT+TGG 0.540129 4:-75537371 None:intergenic
ATCTAAGTGCCCCACTTGCA+GGG 0.540831 4:-75538148 None:intergenic
AACAATGTTAATCTTCCACC+CGG 0.553928 4:+75537016 MsG0480022691.01.T01:CDS
AAGATACCTTGAAGTTGCCA+TGG 0.559700 4:-75537154 None:intergenic
TATGTAGCAGCCCTGCAAGT+GGG 0.564982 4:+75538138 MsG0480022691.01.T01:three_prime_UTR
GAAGATGATCAAGATGGAGA+TGG 0.565312 4:+75537819 MsG0480022691.01.T01:CDS
AAGATGATCAAGATGGAGAT+GGG 0.567207 4:+75537820 MsG0480022691.01.T01:CDS
TTATTGGATGCCAATGGGAA+TGG 0.569720 4:+75537361 MsG0480022691.01.T01:CDS
TCCGACAGATGAAGAGCTTG+TGG 0.584104 4:+75537051 MsG0480022691.01.T01:CDS
ATGTAGCAGCCCTGCAAGTG+GGG 0.585226 4:+75538139 MsG0480022691.01.T01:three_prime_UTR
AGCAACTTCACTGATTACAA+TGG 0.589690 4:-75538100 None:intergenic
TTTGGATGATGATCTGCTAG+AGG 0.602702 4:-75537522 None:intergenic
ATGGATAGAGGTCAAGATCA+GGG 0.606057 4:-75537126 None:intergenic
ACCACAAGCTCTTCATCTGT+CGG 0.608045 4:-75537052 None:intergenic
CTATGTAGCAGCCCTGCAAG+TGG 0.612866 4:+75538137 MsG0480022691.01.T01:three_prime_UTR
TGTCGGATAAAATCTAAACC+CGG 0.617713 4:-75537035 None:intergenic
CTTTGGAAGAGGGAAATCAA+TGG 0.623475 4:+75537294 MsG0480022691.01.T01:CDS
CGTGATGAAGATGATCAAGA+TGG 0.626157 4:+75537813 MsG0480022691.01.T01:CDS
GTCGGATAAAATCTAAACCC+GGG 0.643132 4:-75537034 None:intergenic
GGGATAACATCTGGATGACA+AGG 0.648268 4:-75537106 None:intergenic
CAAAATAGAATGACTAACAG+TGG 0.651988 4:+75537338 MsG0480022691.01.T01:CDS
ACAATGTTAATCTTCCACCC+GGG 0.696944 4:+75537017 MsG0480022691.01.T01:CDS
GGATAAAATCTAAACCCGGG+TGG 0.700319 4:-75537031 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAATTAATTAATTGTTTGT+AGG + Chr4:75537266-75537285 MsG0480022691.01.T01:intron 10.0%
!!! GTTACATTAAATTTTAAATT+TGG + Chr4:75537210-75537229 MsG0480022691.01.T01:intron 10.0%
!! AAATATTATGTGTTCCATAT+TGG + Chr4:75537431-75537450 MsG0480022691.01.T01:CDS 20.0%
!! CTCTATTCTCTAAATAATAA+TGG + Chr4:75536976-75536995 MsG0480022691.01.T01:exon 20.0%
!! GAAATTAAATGAAAGAGAAA+TGG - Chr4:75536947-75536966 None:intergenic 20.0%
!! TAATGTAACATAGTATGAAT+TGG - Chr4:75537199-75537218 None:intergenic 20.0%
!!! AAGAATATACTAACTGATTT+TGG - Chr4:75537560-75537579 None:intergenic 20.0%
!!! TACAGAGATATTTAAAATGT+CGG - Chr4:75537688-75537707 None:intergenic 20.0%
!!! TATTTTTCCTTTGATTTAGT+GGG + Chr4:75537770-75537789 MsG0480022691.01.T01:intron 20.0%
!!! TTATTTTTCCTTTGATTTAG+TGG + Chr4:75537769-75537788 MsG0480022691.01.T01:intron 20.0%
! AATGGTACTATTATAGTAGA+AGG + Chr4:75537312-75537331 MsG0480022691.01.T01:CDS 25.0%
! ATATTCTTGCATTATCCAAT+TGG - Chr4:75537480-75537499 None:intergenic 25.0%
! TATTCACACACATAAGATAA+TGG - Chr4:75537241-75537260 None:intergenic 25.0%
! TTAGATATTTATCTCCCATT+TGG - Chr4:75537992-75538011 None:intergenic 25.0%
!! AATTAGCTACATTTTCCAAA+TGG + Chr4:75537974-75537993 MsG0480022691.01.T01:three_prime_UTR 25.0%
!! ACAGAGATATTTAAAATGTC+GGG - Chr4:75537687-75537706 None:intergenic 25.0%
!! ATTAGCTACATTTTCCAAAT+GGG + Chr4:75537975-75537994 MsG0480022691.01.T01:three_prime_UTR 25.0%
!!! TTTTGGTTGTGATTTTCTTT+TGG - Chr4:75537543-75537562 None:intergenic 25.0%
AAGCCTTTCTATGAAGAAAA+TGG - Chr4:75537078-75537097 None:intergenic 30.0%
ACGTCATATTGCATATTGTT+TGG - Chr4:75538192-75538211 None:intergenic 30.0%
CAAAATAGAATGACTAACAG+TGG + Chr4:75537338-75537357 MsG0480022691.01.T01:CDS 30.0%
TGCATTTGCATCATCTAATT+TGG - Chr4:75537909-75537928 None:intergenic 30.0%
AACAATGTTAATCTTCCACC+CGG + Chr4:75537016-75537035 MsG0480022691.01.T01:CDS 35.0%
AAGATGATCAAGATGGAGAT+GGG + Chr4:75537820-75537839 MsG0480022691.01.T01:CDS 35.0%
AATGAAAGAGAAATGGAGCT+AGG - Chr4:75536940-75536959 None:intergenic 35.0%
ATCTGGATGACAAGGTAAAA+GGG - Chr4:75537101-75537120 None:intergenic 35.0%
ATGGAAGCTAAAGTAGCTAA+TGG - Chr4:75538084-75538103 None:intergenic 35.0%
ATTGTTTGTAGGTAGAGCTT+TGG + Chr4:75537277-75537296 MsG0480022691.01.T01:intron 35.0%
CATATCACCCACTAAATCAA+AGG - Chr4:75537780-75537799 None:intergenic 35.0%
CTAATGGTAACCAAACCAAT+TGG + Chr4:75537462-75537481 MsG0480022691.01.T01:CDS 35.0%
CTTGCATTATCCAATTGGTT+TGG - Chr4:75537475-75537494 None:intergenic 35.0%
GAATGACTAACAGTGGTTAT+TGG + Chr4:75537345-75537364 MsG0480022691.01.T01:CDS 35.0%
TGTCGGATAAAATCTAAACC+CGG - Chr4:75537038-75537057 None:intergenic 35.0%
! AGCAACTTCACTGATTACAA+TGG - Chr4:75538103-75538122 None:intergenic 35.0%
! GGTCCATTTTCTTCATAGAA+AGG + Chr4:75537072-75537091 MsG0480022691.01.T01:CDS 35.0%
!! AATGTGCTGAGTTTTGTCAT+TGG - Chr4:75537624-75537643 None:intergenic 35.0%
!! CAATTGGTTTGGTTACCATT+AGG - Chr4:75537464-75537483 None:intergenic 35.0%
AAGATACCTTGAAGTTGCCA+TGG - Chr4:75537157-75537176 None:intergenic 40.0%
AATGGATAGAGGTCAAGATC+AGG - Chr4:75537130-75537149 None:intergenic 40.0%
ACAATGTTAATCTTCCACCC+GGG + Chr4:75537017-75537036 MsG0480022691.01.T01:CDS 40.0%
ACCTCTATCCATTTGATCCA+TGG + Chr4:75537137-75537156 MsG0480022691.01.T01:CDS 40.0%
ACTTGTTCTTCCATTCCCAT+TGG - Chr4:75537374-75537393 None:intergenic 40.0%
AGAAATGGAGCTAGGTAGAA+TGG - Chr4:75536932-75536951 None:intergenic 40.0%
AGCTCAAGCAATAAGAGAGT+TGG + Chr4:75537401-75537420 MsG0480022691.01.T01:CDS 40.0%
AGTGGTTATTGGATGCCAAT+GGG + Chr4:75537356-75537375 MsG0480022691.01.T01:CDS 40.0%
ATGGATAGAGGTCAAGATCA+GGG - Chr4:75537129-75537148 None:intergenic 40.0%
CATCTGGATGACAAGGTAAA+AGG - Chr4:75537102-75537121 None:intergenic 40.0%
CATTAGGTGCTTCTCCAATA+TGG - Chr4:75537448-75537467 None:intergenic 40.0%
CGTGATGAAGATGATCAAGA+TGG + Chr4:75537813-75537832 MsG0480022691.01.T01:CDS 40.0%
GAAGATGATCAAGATGGAGA+TGG + Chr4:75537819-75537838 MsG0480022691.01.T01:CDS 40.0%
GTCGGATAAAATCTAAACCC+GGG - Chr4:75537037-75537056 None:intergenic 40.0%
TCAAGATCAGGGATAACATC+TGG - Chr4:75537118-75537137 None:intergenic 40.0%
TGAAGTTGCCATGGATCAAA+TGG - Chr4:75537148-75537167 None:intergenic 40.0%
TTATTGGATGCCAATGGGAA+TGG + Chr4:75537361-75537380 MsG0480022691.01.T01:CDS 40.0%
TTTGATCCATGGCAACTTCA+AGG + Chr4:75537148-75537167 MsG0480022691.01.T01:CDS 40.0%
TTTGGATGATGATCTGCTAG+AGG - Chr4:75537525-75537544 None:intergenic 40.0%
! CTTTGGAAGAGGGAAATCAA+TGG + Chr4:75537294-75537313 MsG0480022691.01.T01:CDS 40.0%
!! CATATTGGAGAAGCACCTAA+TGG + Chr4:75537446-75537465 MsG0480022691.01.T01:CDS 40.0%
ACCACAAGCTCTTCATCTGT+CGG - Chr4:75537055-75537074 None:intergenic 45.0%
ACTTGCAATACCCCTCTTCT+CGG - Chr4:75537652-75537671 None:intergenic 45.0%
CAGTGGTTATTGGATGCCAA+TGG + Chr4:75537355-75537374 MsG0480022691.01.T01:CDS 45.0%
GCCATGGATCAAATGGATAG+AGG - Chr4:75537141-75537160 None:intergenic 45.0%
GGATAAAATCTAAACCCGGG+TGG - Chr4:75537034-75537053 None:intergenic 45.0%
GGGATAACATCTGGATGACA+AGG - Chr4:75537109-75537128 None:intergenic 45.0%
TGGGACAGAGCTATCTTGTT+TGG + Chr4:75537839-75537858 MsG0480022691.01.T01:CDS 45.0%
!! ACATTAAGTGCCGAGAAGAG+GGG + Chr4:75537639-75537658 MsG0480022691.01.T01:intron 45.0%
!! CACATTAAGTGCCGAGAAGA+GGG + Chr4:75537638-75537657 MsG0480022691.01.T01:intron 45.0%
!! GTAGGTAGAGCTTTGGAAGA+GGG + Chr4:75537284-75537303 MsG0480022691.01.T01:intron 45.0%
!! TGTAGGTAGAGCTTTGGAAG+AGG + Chr4:75537283-75537302 MsG0480022691.01.T01:intron 45.0%
ATCTAAGTGCCCCACTTGCA+GGG - Chr4:75538151-75538170 None:intergenic 50.0%
TATCTAAGTGCCCCACTTGC+AGG - Chr4:75538152-75538171 None:intergenic 50.0%
TATGTAGCAGCCCTGCAAGT+GGG + Chr4:75538138-75538157 MsG0480022691.01.T01:three_prime_UTR 50.0%
TCCGACAGATGAAGAGCTTG+TGG + Chr4:75537051-75537070 MsG0480022691.01.T01:CDS 50.0%
!! GCACATTAAGTGCCGAGAAG+AGG + Chr4:75537637-75537656 MsG0480022691.01.T01:intron 50.0%
ATGTAGCAGCCCTGCAAGTG+GGG + Chr4:75538139-75538158 MsG0480022691.01.T01:three_prime_UTR 55.0%
CTATGTAGCAGCCCTGCAAG+TGG + Chr4:75538137-75538156 MsG0480022691.01.T01:three_prime_UTR 55.0%
Chromosome Type Strat End Strand Name
Chr4 gene 75536917 75538220 75536917 ID=MsG0480022691.01;Name=MsG0480022691.01
Chr4 mRNA 75536917 75538220 75536917 ID=MsG0480022691.01.T01;Parent=MsG0480022691.01;Name=MsG0480022691.01.T01;_AED=0.49;_eAED=0.49;_QI=78|1|1|1|1|1|3|306|192
Chr4 exon 75536917 75537169 75536917 ID=MsG0480022691.01.T01:exon:10508;Parent=MsG0480022691.01.T01
Chr4 exon 75537288 75537565 75537288 ID=MsG0480022691.01.T01:exon:10509;Parent=MsG0480022691.01.T01
Chr4 exon 75537789 75538220 75537789 ID=MsG0480022691.01.T01:exon:10510;Parent=MsG0480022691.01.T01
Chr4 five_prime_UTR 75536917 75536994 75536917 ID=MsG0480022691.01.T01:five_prime_utr;Parent=MsG0480022691.01.T01
Chr4 CDS 75536995 75537169 75536995 ID=MsG0480022691.01.T01:cds;Parent=MsG0480022691.01.T01
Chr4 CDS 75537288 75537565 75537288 ID=MsG0480022691.01.T01:cds;Parent=MsG0480022691.01.T01
Chr4 CDS 75537789 75537914 75537789 ID=MsG0480022691.01.T01:cds;Parent=MsG0480022691.01.T01
Chr4 three_prime_UTR 75537915 75538220 75537915 ID=MsG0480022691.01.T01:three_prime_utr;Parent=MsG0480022691.01.T01
Gene Sequence

>MsG0480022691.01.T01

ATGGTAGATAATAATACTAATAACAATGTTAATCTTCCACCCGGGTTTAGATTTTATCCGACAGATGAAGAGCTTGTGGTCCATTTTCTTCATAGAAAGGCTTCCCTTTTACCTTGTCATCCAGATGTTATCCCTGATCTTGACCTCTATCCATTTGATCCATGGCAACTTCAAGGTAGAGCTTTGGAAGAGGGAAATCAATGGTACTATTATAGTAGAAGGACACAAAATAGAATGACTAACAGTGGTTATTGGATGCCAATGGGAATGGAAGAACAAGTTGTAACAAGCTCAAGCAATAAGAGAGTTGGTATGAAGAAATATTATGTGTTCCATATTGGAGAAGCACCTAATGGTAACCAAACCAATTGGATAATGCAAGAATATCGTCTATCAGATTCTGCTTCTTCCTCTAGCAGATCATCATCCAAAAGAAAATCACAACCAAAATCATGGGTGATATGTCGAGTTTATGAGCGTGATGAAGATGATCAAGATGGAGATGGGACAGAGCTATCTTGTTTGGATGAAGTTTTCTTGTCATTAGATGATCTTGATGAAGTAAGCTTGCCAAATTAG

Protein sequence

>MsG0480022691.01.T01

MVDNNTNNNVNLPPGFRFYPTDEELVVHFLHRKASLLPCHPDVIPDLDLYPFDPWQLQGRALEEGNQWYYYSRRTQNRMTNSGYWMPMGMEEQVVTSSSNKRVGMKKYYVFHIGEAPNGNQTNWIMQEYRLSDSASSSSRSSSKRKSQPKSWVICRVYERDEDDQDGDGTELSCLDEVFLSLDDLDEVSLPN*